Table of contents:
- Overview
- Performance Plots
- Performance of PETfold_pre2.0(seed)
- scored higher in this pairwise comparison
- Performance of MCFold
- scored lower in this pairwise comparison
- Compile and download dataset for PETfold_pre2.0(seed) & MCFold [.zip] - may take several seconds...
Overview
| Metric |
PETfold_pre2.0(seed) |
|
MCFold |
|---|
| MCC |
0.663 |
>
|
0.441 |
| Average MCC ± 95% Confidence Intervals |
0.603
±
0.187
|
>
|
0.426
±
0.216
|
| Sensitivity |
0.549 |
>
|
0.469 |
| Positive Predictive Value |
0.807 |
>
|
0.423 |
| Total TP |
96 |
>
|
82 |
| Total TN |
25718 |
>
|
25643 |
| Total FP |
29 |
<
|
133 |
| Total FP CONTRA |
2 |
<
|
16 |
| Total FP INCONS |
21 |
<
|
96 |
| Total FP COMP |
6 |
<
|
21 |
| Total FN |
79 |
<
|
93 |
| P-value |
0.0 |
Performance plots
-
Comparison of performance of PETfold_pre2.0(seed) and MCFold. Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data
(individual counts for PETfold_pre2.0(seed)
and MCFold).
-
Comparison of average Matthews Correlation Coefficients (MCCs) for PETfold_pre2.0(seed) and MCFold. The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data
(individual counts for PETfold_pre2.0(seed)
and MCFold).
Performance of PETfold_pre2.0(seed)
- scored higher in this pairwise comparison
1. Total counts & total scores for PETfold_pre2.0(seed)
| Total Base Pair Counts |
|---|
| Total TP |
96 |
| Total TN |
25718 |
| Total FP |
29 |
| Total FP CONTRA |
2 |
| Total FP INCONS |
21 |
| Total FP COMP |
6 |
| Total FN |
79 |
| Total Scores |
|---|
| MCC |
0.663 |
| Average MCC ± 95% Confidence Intervals |
0.603
±
0.187
|
| Sensitivity |
0.549 |
| Positive Predictive Value |
0.807 |
| Nr of predictions |
6 |
Performance of MCFold
- scored lower in this pairwise comparison
1. Total counts & total scores for MCFold
| Total Base Pair Counts |
|---|
| Total TP |
82 |
| Total TN |
25643 |
| Total FP |
133 |
| Total FP CONTRA |
16 |
| Total FP INCONS |
96 |
| Total FP COMP |
21 |
| Total FN |
93 |
| Total Scores |
|---|
| MCC |
0.441 |
| Average MCC ± 95% Confidence Intervals |
0.426
±
0.216
|
| Sensitivity |
0.469 |
| Positive Predictive Value |
0.423 |
| Nr of predictions |
6 |
Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based
on the paper by Gardener & Giegerich, 2004.
| 
