Table of contents:
- Overview
- Performance Plots
- Performance of PETfold_pre2.0(seed)
- scored higher in this pairwise comparison
- Performance of RNAalifold(seed)
- scored lower in this pairwise comparison
- Compile and download dataset for PETfold_pre2.0(seed) & RNAalifold(seed) [.zip] - may take several seconds...
Overview
| Metric |
PETfold_pre2.0(seed) |
|
RNAalifold(seed) |
|---|
| MCC |
0.575 |
>
|
0.472 |
| Average MCC ± 95% Confidence Intervals |
0.540
±
0.149
|
>
|
0.444
±
0.347
|
| Sensitivity |
0.459 |
>
|
0.293 |
| Positive Predictive Value |
0.726 |
<
|
0.765 |
| Total TP |
61 |
>
|
39 |
| Total TN |
20209 |
<
|
20242 |
| Total FP |
30 |
>
|
15 |
| Total FP CONTRA |
2 |
>
|
0 |
| Total FP INCONS |
21 |
>
|
12 |
| Total FP COMP |
7 |
>
|
3 |
| Total FN |
72 |
<
|
94 |
| P-value |
0.0 |
Performance plots
-
Comparison of performance of PETfold_pre2.0(seed) and RNAalifold(seed). Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data
(individual counts for PETfold_pre2.0(seed)
and RNAalifold(seed)).
-
Comparison of average Matthews Correlation Coefficients (MCCs) for PETfold_pre2.0(seed) and RNAalifold(seed). The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data
(individual counts for PETfold_pre2.0(seed)
and RNAalifold(seed)).
Performance of PETfold_pre2.0(seed)
- scored higher in this pairwise comparison
1. Total counts & total scores for PETfold_pre2.0(seed)
| Total Base Pair Counts |
|---|
| Total TP |
61 |
| Total TN |
20209 |
| Total FP |
30 |
| Total FP CONTRA |
2 |
| Total FP INCONS |
21 |
| Total FP COMP |
7 |
| Total FN |
72 |
| Total Scores |
|---|
| MCC |
0.575 |
| Average MCC ± 95% Confidence Intervals |
0.540
±
0.149
|
| Sensitivity |
0.459 |
| Positive Predictive Value |
0.726 |
| Nr of predictions |
5 |
Performance of RNAalifold(seed)
- scored lower in this pairwise comparison
1. Total counts & total scores for RNAalifold(seed)
| Total Base Pair Counts |
|---|
| Total TP |
39 |
| Total TN |
20242 |
| Total FP |
15 |
| Total FP CONTRA |
0 |
| Total FP INCONS |
12 |
| Total FP COMP |
3 |
| Total FN |
94 |
| Total Scores |
|---|
| MCC |
0.472 |
| Average MCC ± 95% Confidence Intervals |
0.444
±
0.347
|
| Sensitivity |
0.293 |
| Positive Predictive Value |
0.765 |
| Nr of predictions |
5 |
Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based
on the paper by Gardener & Giegerich, 2004.
| 
