Table of contents:
- Overview
- Performance Plots
- Performance of PETfold_pre2.0(seed)
- scored higher in this pairwise comparison
- Performance of TurboFold(seed)
- scored lower in this pairwise comparison
- Compile and download dataset for PETfold_pre2.0(seed) & TurboFold(seed) [.zip] - may take several seconds...
Overview
| Metric |
PETfold_pre2.0(seed) |
|
TurboFold(seed) |
|---|
| MCC |
0.651 |
>
|
0.460 |
| Average MCC ± 95% Confidence Intervals |
0.588
±
0.167
|
>
|
0.454
±
0.321
|
| Sensitivity |
0.529 |
>
|
0.380 |
| Positive Predictive Value |
0.805 |
>
|
0.563 |
| Total TP |
99 |
>
|
71 |
| Total TN |
27310 |
>
|
27307 |
| Total FP |
31 |
<
|
65 |
| Total FP CONTRA |
2 |
<
|
7 |
| Total FP INCONS |
22 |
<
|
48 |
| Total FP COMP |
7 |
<
|
10 |
| Total FN |
88 |
<
|
116 |
| P-value |
0.0 |
Performance plots
-
Comparison of performance of PETfold_pre2.0(seed) and TurboFold(seed). Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data
(individual counts for PETfold_pre2.0(seed)
and TurboFold(seed)).
-
Comparison of average Matthews Correlation Coefficients (MCCs) for PETfold_pre2.0(seed) and TurboFold(seed). The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data
(individual counts for PETfold_pre2.0(seed)
and TurboFold(seed)).
Performance of PETfold_pre2.0(seed)
- scored higher in this pairwise comparison
1. Total counts & total scores for PETfold_pre2.0(seed)
| Total Base Pair Counts |
|---|
| Total TP |
99 |
| Total TN |
27310 |
| Total FP |
31 |
| Total FP CONTRA |
2 |
| Total FP INCONS |
22 |
| Total FP COMP |
7 |
| Total FN |
88 |
| Total Scores |
|---|
| MCC |
0.651 |
| Average MCC ± 95% Confidence Intervals |
0.588
±
0.167
|
| Sensitivity |
0.529 |
| Positive Predictive Value |
0.805 |
| Nr of predictions |
6 |
Performance of TurboFold(seed)
- scored lower in this pairwise comparison
1. Total counts & total scores for TurboFold(seed)
| Total Base Pair Counts |
|---|
| Total TP |
71 |
| Total TN |
27307 |
| Total FP |
65 |
| Total FP CONTRA |
7 |
| Total FP INCONS |
48 |
| Total FP COMP |
10 |
| Total FN |
116 |
| Total Scores |
|---|
| MCC |
0.460 |
| Average MCC ± 95% Confidence Intervals |
0.454
±
0.321
|
| Sensitivity |
0.380 |
| Positive Predictive Value |
0.563 |
| Nr of predictions |
6 |
Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based
on the paper by Gardener & Giegerich, 2004.
| 
