Table of contents:
- Overview
- Performance Plots
- Performance of PPfold(20)
- scored higher in this pairwise comparison
- Performance of RDfolder
- scored lower in this pairwise comparison
- Compile and download dataset for PPfold(20) & RDfolder [.zip] - may take several seconds...
Overview
| Metric |
PPfold(20) |
|
RDfolder |
|---|
| MCC |
0.710 |
>
|
0.407 |
| Average MCC ± 95% Confidence Intervals |
0.690
±
0.116
|
>
|
0.407
±
0.209
|
| Sensitivity |
0.552 |
>
|
0.295 |
| Positive Predictive Value |
0.918 |
>
|
0.574 |
| Total TP |
101 |
>
|
54 |
| Total TN |
15992 |
<
|
16008 |
| Total FP |
11 |
<
|
43 |
| Total FP CONTRA |
0 |
<
|
3 |
| Total FP INCONS |
9 |
<
|
37 |
| Total FP COMP |
2 |
<
|
3 |
| Total FN |
82 |
<
|
129 |
| P-value |
0.0 |
Performance plots
-
Comparison of performance of PPfold(20) and RDfolder. Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data
(individual counts for PPfold(20)
and RDfolder).
-
Comparison of average Matthews Correlation Coefficients (MCCs) for PPfold(20) and RDfolder. The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data
(individual counts for PPfold(20)
and RDfolder).
Performance of PPfold(20)
- scored higher in this pairwise comparison
1. Total counts & total scores for PPfold(20)
| Total Base Pair Counts |
|---|
| Total TP |
101 |
| Total TN |
15992 |
| Total FP |
11 |
| Total FP CONTRA |
0 |
| Total FP INCONS |
9 |
| Total FP COMP |
2 |
| Total FN |
82 |
| Total Scores |
|---|
| MCC |
0.710 |
| Average MCC ± 95% Confidence Intervals |
0.690
±
0.116
|
| Sensitivity |
0.552 |
| Positive Predictive Value |
0.918 |
| Nr of predictions |
6 |
Performance of RDfolder
- scored lower in this pairwise comparison
1. Total counts & total scores for RDfolder
| Total Base Pair Counts |
|---|
| Total TP |
54 |
| Total TN |
16008 |
| Total FP |
43 |
| Total FP CONTRA |
3 |
| Total FP INCONS |
37 |
| Total FP COMP |
3 |
| Total FN |
129 |
| Total Scores |
|---|
| MCC |
0.407 |
| Average MCC ± 95% Confidence Intervals |
0.407
±
0.209
|
| Sensitivity |
0.295 |
| Positive Predictive Value |
0.574 |
| Nr of predictions |
6 |
Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based
on the paper by Gardener & Giegerich, 2004.
| 
