CompaRNA - on-line benchmarks of RNA structure prediction methods

Laboratory of Structural Bioinformatics @ Adam Mickiewicz University in Poznan

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Overview

Metric	Afold		RSpredict(seed)
MCC	0.517	>	0.386
Average MCC ± 95% Confidence Intervals	0.570 ± 0.018	>	0.256 ± 0.025
Sensitivity	0.511	>	0.244
Positive Predictive Value	0.524	<	0.612
Total TP	33301	>	15899
Total TN	89691940	<	89729482
Total FP	34669	>	11990
Total FP CONTRA	4285	>	1420
Total FP INCONS	25933	>	8658
Total FP COMP	4451	>	1912
Total FN	31866	<	49268
P-value	3.56938820447e-08

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Performance plots

Comparison of performance of Afold and RSpredict(seed). Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data (individual counts for Afold and RSpredict(seed)).
Average Matthews Correlation Coefficients (MCC) with 95% confidence intervals (CIs) were plotted for different RNA families, for which at least 3 members were present in the benchmarking dataset. 'n' denotes the number of MCCs used to calculate the average and CI. See tables below for raw data (individual counts for Afold and RSpredict(seed)).
Comparison of average Matthews Correlation Coefficients (MCCs) for Afold and RSpredict(seed). The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data (individual counts for Afold and RSpredict(seed)).

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Performance of Afold - scored higher in this pairwise comparison

1. Total counts & total scores for Afold

Total Base Pair Counts
Total TP	33301
Total TN	89691940
Total FP	34669
Total FP CONTRA	4285
Total FP INCONS	25933
Total FP COMP	4451
Total FN	31866

Total Scores
MCC	0.517
Average MCC ± 95% Confidence Intervals	0.570 ± 0.018
Sensitivity	0.511
Positive Predictive Value	0.524
Nr of predictions	572

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2. Individual counts for Afold [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00001	RNaseP_arch links to Rfam database...	0.75	0.72	0.78	54	34122	23	3	12	8	21
ASE_00002	RNaseP_arch links to Rfam database...	0.62	0.62	0.63	45	35439	33	4	23	6	28
ASE_00004	RNaseP_bact_a links to Rfam database...	0.51	0.52	0.51	50	47797	49	10	38	1	47
ASE_00005	RNaseP_bact_a links to Rfam database...	0.61	0.56	0.66	66	57870	39	0	34	5	51
ASE_00006	RNaseP_bact_a links to Rfam database...	0.66	0.67	0.65	62	47491	36	7	26	3	31
ASE_00007	RNaseP_bact_a links to Rfam database...	0.56	0.53	0.59	58	59586	45	1	40	4	52
ASE_00009	RNaseP_arch links to Rfam database...	0.79	0.76	0.82	51	26044	13	0	11	2	16
ASE_00012	RNaseP_bact_a links to Rfam database...	0.41	0.39	0.43	48	73808	72	1	63	8	75
ASE_00014	RNaseP_arch links to Rfam database...	0.24	0.25	0.24	26	54178	82	8	73	1	80
ASE_00017	RNaseP_nuc links to Rfam database...	0.26	0.28	0.24	18	50965	74	6	51	17	46
ASE_00020	RNaseP_bact_a links to Rfam database...	0.57	0.54	0.60	68	73807	46	6	39	1	58
ASE_00021	RNaseP_bact_a links to Rfam database...	0.54	0.51	0.59	81	104058	66	7	50	9	79
ASE_00023	RNaseP_bact_a links to Rfam database...	0.66	0.64	0.69	81	84137	42	3	34	5	46
ASE_00028	RNaseP_bact_b links to Rfam database...	0.58	0.56	0.61	70	84551	54	4	41	9	56
ASE_00029	RNaseP_bact_a links to Rfam database...	0.55	0.53	0.56	65	82912	55	5	46	4	57
ASE_00030	RNaseP_bact_a links to Rfam database...	0.61	0.59	0.63	85	85357	50	5	44	1	60
ASE_00032	RNaseP_bact_a links to Rfam database...	0.55	0.53	0.58	62	80094	50	6	38	6	56
ASE_00033	RNaseP_bact_a links to Rfam database...	0.33	0.31	0.36	38	64874	70	4	64	2	83
ASE_00036	RNaseP_bact_a links to Rfam database...	0.41	0.39	0.43	52	75735	71	8	60	3	80
ASE_00037	RNaseP_bact_a links to Rfam database...	0.34	0.32	0.37	35	59245	63	0	60	3	75
ASE_00038	RNaseP_bact_a links to Rfam database...	0.53	0.52	0.54	53	53529	48	4	42	2	48
ASE_00040	RNaseP_bact_a links to Rfam database...	0.50	0.47	0.53	63	78883	63	5	52	6	70
ASE_00041	RNaseP_bact_a links to Rfam database...	0.53	0.51	0.55	55	57530	51	2	43	6	53
ASE_00042	RNaseP_bact_a links to Rfam database...	0.44	0.42	0.47	61	89969	73	3	67	3	84
ASE_00044	RNaseP_bact_a links to Rfam database...	0.74	0.70	0.78	74	54520	26	3	18	5	31
ASE_00045	RNaseP_bact_b links to Rfam database...	0.65	0.65	0.65	52	47198	37	7	21	9	28
ASE_00046	RNaseP_bact_a links to Rfam database...	0.59	0.55	0.63	57	50313	33	2	31	0	46
ASE_00047	RNaseP_bact_a links to Rfam database...	0.40	0.38	0.43	50	74188	68	4	63	1	80
ASE_00053	RNaseP_bact_a links to Rfam database...	0.54	0.52	0.56	69	79278	61	12	42	7	64
ASE_00064	RNaseP_bact_a links to Rfam database...	0.43	0.43	0.44	38	45364	54	5	44	5	51
ASE_00066	RNaseP_bact_a links to Rfam database...	0.57	0.55	0.59	71	72269	52	4	46	2	59
ASE_00068	RNaseP_bact_a links to Rfam database...	0.33	0.32	0.36	27	37599	50	2	47	1	58
ASE_00074	RNaseP_bact_a links to Rfam database...	0.48	0.47	0.50	56	67784	57	7	49	1	63
ASE_00075	RNaseP_bact_a links to Rfam database...	0.65	0.59	0.72	95	108679	46	3	34	9	67
ASE_00076	RNaseP_bact_a links to Rfam database...	0.57	0.54	0.61	64	68160	42	7	34	1	54
ASE_00077	RNaseP_bact_a links to Rfam database...	0.52	0.51	0.54	44	45068	39	6	32	1	42
ASE_00078	RNaseP_bact_a links to Rfam database...	0.67	0.67	0.67	56	42988	32	5	22	5	27
ASE_00079	RNaseP_bact_a links to Rfam database...	0.50	0.48	0.52	48	55519	45	2	42	1	52
ASE_00080	RNaseP_bact_a links to Rfam database...	0.50	0.48	0.52	59	71518	59	3	51	5	64
ASE_00081	RNaseP_bact_a links to Rfam database...	0.46	0.45	0.46	44	49675	53	5	46	2	53
ASE_00082	RNaseP_bact_a links to Rfam database...	0.57	0.54	0.61	63	70396	51	1	40	10	53
ASE_00083	RNaseP_bact_a links to Rfam database...	0.71	0.67	0.76	74	62383	32	1	23	8	36
ASE_00084	RNaseP_bact_a links to Rfam database...	0.72	0.71	0.73	70	53532	30	6	20	4	29
ASE_00087	RNaseP_bact_a links to Rfam database...	0.56	0.51	0.61	74	88288	54	5	43	6	70
ASE_00090	RNaseP_bact_a links to Rfam database...	0.46	0.47	0.47	47	55510	59	6	48	5	54
ASE_00092	RNaseP_bact_a links to Rfam database...	0.68	0.65	0.72	73	63444	35	3	26	6	40
ASE_00096	RNaseP_bact_a links to Rfam database...	0.51	0.50	0.53	57	63439	51	2	48	1	58
ASE_00104	RNaseP_bact_a links to Rfam database...	0.53	0.50	0.56	60	64153	49	8	40	1	59
ASE_00111	RNaseP_nuc links to Rfam database...	0.15	0.19	0.12	11	49992	89	31	52	6	46
ASE_00112	RNaseP_bact_a links to Rfam database...	0.77	0.72	0.82	84	75364	25	5	13	7	32
ASE_00114	RNaseP_bact_b links to Rfam database...	0.40	0.40	0.39	31	45372	58	6	42	10	46
ASE_00115	RNaseP_bact_a links to Rfam database...	0.55	0.54	0.56	55	54517	51	1	42	8	46
ASE_00116	RNaseP_arch links to Rfam database...	0.24	0.24	0.23	16	31557	54	8	45	1	50
ASE_00118	RNaseP_bact_a links to Rfam database...	0.38	0.38	0.39	39	60625	64	5	57	2	63
ASE_00119	RNaseP_bact_a links to Rfam database...	0.63	0.60	0.67	65	62738	35	1	31	3	43
ASE_00120	RNaseP_arch links to Rfam database...	0.37	0.35	0.38	33	46885	53	9	44	0	61
ASE_00121	RNaseP_arch links to Rfam database...	0.29	0.29	0.29	27	45058	65	8	57	0	65
ASE_00122	RNaseP_bact_a links to Rfam database...	0.28	0.27	0.29	24	43283	60	4	54	2	64
ASE_00123	RNaseP_bact_a links to Rfam database...	0.44	0.42	0.46	36	38425	48	3	39	6	49
ASE_00125	RNaseP_bact_a links to Rfam database...	0.64	0.63	0.65	55	39255	32	4	26	2	33
ASE_00126	RNaseP_bact_a links to Rfam database...	0.74	0.74	0.73	61	40387	27	3	19	5	21
ASE_00128	RNaseP_bact_a links to Rfam database...	0.74	0.72	0.77	72	53207	30	2	20	8	28
ASE_00129	RNaseP_bact_a links to Rfam database...	0.77	0.74	0.80	82	62732	26	3	18	5	29
ASE_00131	RNaseP_bact_a links to Rfam database...	0.62	0.55	0.70	47	39273	31	0	20	11	38
ASE_00132	RNaseP_bact_a links to Rfam database...	0.63	0.61	0.65	58	50314	34	7	24	3	37
ASE_00134	RNaseP_bact_a links to Rfam database...	0.43	0.42	0.44	40	50313	54	7	43	4	55
ASE_00135	RNaseP_bact_a links to Rfam database...	0.45	0.44	0.45	48	63084	63	8	50	5	61
ASE_00136	RNaseP_bact_a links to Rfam database...	0.69	0.65	0.72	60	48122	28	3	20	5	32
ASE_00137	RNaseP_bact_a links to Rfam database...	0.44	0.43	0.45	42	48423	53	4	47	2	56
ASE_00138	RNaseP_bact_a links to Rfam database...	0.51	0.49	0.53	40	40395	36	4	31	1	41
ASE_00139	RNaseP_bact_a links to Rfam database...	0.83	0.77	0.89	80	54195	16	2	8	6	24
ASE_00140	RNaseP_bact_a links to Rfam database...	0.62	0.57	0.67	71	70770	38	6	29	3	54
ASE_00145	RNaseP_arch links to Rfam database...	0.40	0.40	0.40	44	70016	69	9	56	4	67
ASE_00146	RNaseP_bact_a links to Rfam database...	0.55	0.52	0.59	64	70768	50	2	42	6	60
ASE_00148	RNaseP_arch links to Rfam database...	0.63	0.60	0.65	93	112433	53	4	45	4	61
ASE_00151	RNaseP_bact_a links to Rfam database...	0.26	0.26	0.27	25	51912	66	9	57	0	73
ASE_00153	RNaseP_nuc links to Rfam database...	0.66	0.67	0.65	49	57555	68	2	24	42	24
ASE_00154	RNaseP_arch links to Rfam database...	0.57	0.55	0.58	59	65240	45	4	38	3	48
ASE_00155	RNaseP_arch links to Rfam database...	0.50	0.48	0.52	68	93396	69	10	54	5	74
ASE_00161	RNaseP_bact_b links to Rfam database...	0.27	0.29	0.26	25	53531	73	15	57	1	62
ASE_00163	RNaseP_bact_a links to Rfam database...	0.64	0.63	0.66	59	53211	43	4	27	12	34
ASE_00165	RNaseP_bact_a links to Rfam database...	0.64	0.60	0.67	61	52884	31	5	25	1	40
ASE_00168	RNaseP_nuc links to Rfam database...	0.31	0.38	0.25	24	60631	88	24	47	17	40
ASE_00169	RNaseP_bact_a links to Rfam database...	0.49	0.48	0.52	51	57192	52	6	42	4	56
ASE_00170	RNaseP_bact_a links to Rfam database...	0.70	0.68	0.72	63	48740	27	2	23	2	30
ASE_00171	RNaseP_bact_a links to Rfam database...	0.70	0.69	0.71	65	48425	28	5	21	2	29
ASE_00172	RNaseP_bact_a links to Rfam database...	0.62	0.61	0.63	65	58893	41	8	30	3	41
ASE_00174	RNaseP_bact_a links to Rfam database...	0.59	0.57	0.62	62	60975	42	6	32	4	47
ASE_00175	RNaseP_bact_a links to Rfam database...	0.59	0.59	0.59	63	59925	45	7	36	2	44
ASE_00176	RNaseP_bact_a links to Rfam database...	0.60	0.55	0.64	61	59936	38	5	29	4	49
ASE_00179	RNaseP_bact_a links to Rfam database...	0.64	0.65	0.62	55	44164	35	7	27	1	29
ASE_00180	RNaseP_bact_a links to Rfam database...	0.71	0.69	0.74	69	51267	31	2	22	7	31
ASE_00181	RNaseP_bact_a links to Rfam database...	0.54	0.53	0.55	56	57528	52	3	43	6	50
ASE_00182	RNaseP_bact_a links to Rfam database...	0.60	0.58	0.62	79	84128	49	6	42	1	57
ASE_00185	RNaseP_bact_a links to Rfam database...	0.72	0.70	0.74	89	73416	38	6	25	7	39
ASE_00186	RNaseP_bact_a links to Rfam database...	0.73	0.69	0.78	91	78887	30	3	22	5	41
ASE_00187	RNaseP_arch links to Rfam database...	0.50	0.48	0.51	55	68528	58	7	45	6	60
ASE_00190	RNaseP_bact_b links to Rfam database...	0.49	0.46	0.52	41	45372	44	7	31	6	49
ASE_00191	RNaseP_arch links to Rfam database...	0.56	0.52	0.59	32	29592	32	1	21	10	29
ASE_00192	RNaseP_bact_b links to Rfam database...	0.40	0.38	0.42	50	84547	75	6	63	6	83
ASE_00196	RNaseP_arch links to Rfam database...	0.76	0.75	0.77	56	31553	21	2	15	4	19
ASE_00197	RNaseP_bact_a links to Rfam database...	0.49	0.46	0.52	67	89123	66	4	59	3	78
ASE_00198	RNaseP_bact_a links to Rfam database...	0.61	0.59	0.64	60	52556	40	6	28	6	42
ASE_00203	RNaseP_bact_a links to Rfam database...	0.70	0.69	0.72	66	46573	26	7	19	0	30
ASE_00209	RNaseP_arch links to Rfam database...	0.29	0.28	0.30	25	42989	57	4	53	0	63
ASE_00210	RNaseP_arch links to Rfam database...	0.61	0.62	0.60	40	27194	28	6	21	1	25
ASE_00212	RNaseP_bact_a links to Rfam database...	0.70	0.67	0.74	99	93827	39	3	32	4	49
ASE_00213	RNaseP_arch links to Rfam database...	0.72	0.71	0.73	47	27197	18	3	14	1	19
ASE_00214	RNaseP_bact_a links to Rfam database...	0.72	0.72	0.73	74	56178	36	4	24	8	29
ASE_00215	RNaseP_bact_a links to Rfam database...	0.54	0.51	0.57	50	48429	39	4	33	2	49
ASE_00216	RNaseP_bact_a links to Rfam database...	0.67	0.68	0.66	56	39255	31	9	20	2	26
ASE_00217	RNaseP_bact_a links to Rfam database...	0.40	0.37	0.45	33	40396	48	3	38	7	57
ASE_00221	RNaseP_bact_a links to Rfam database...	0.49	0.45	0.54	53	64522	48	3	42	3	64
ASE_00222	RNaseP_arch links to Rfam database...	0.56	0.55	0.56	87	111947	68	8	59	1	70
ASE_00227	RNaseP_bact_a links to Rfam database...	0.25	0.23	0.27	31	78888	84	6	78	0	102
ASE_00228	RNaseP_bact_a links to Rfam database...	0.52	0.53	0.50	46	46879	46	14	32	0	40
ASE_00229	RNaseP_bact_a links to Rfam database...	0.61	0.61	0.62	53	42400	33	8	25	0	34
ASE_00231	RNaseP_bact_a links to Rfam database...	0.65	0.65	0.65	62	47800	33	5	28	0	34
ASE_00232	RNaseP_bact_a links to Rfam database...	0.63	0.64	0.61	54	38415	37	10	24	3	30
ASE_00234	RNaseP_bact_a links to Rfam database...	0.58	0.53	0.62	69	75355	47	3	39	5	60
ASE_00237	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	45676	92	25	52	15	56
ASE_00238	RNaseP_bact_a links to Rfam database...	0.59	0.59	0.60	67	64150	50	2	42	6	47
ASE_00240	RNaseP_bact_a links to Rfam database...	0.58	0.56	0.60	52	46578	44	4	31	9	41
ASE_00241	RNaseP_bact_a links to Rfam database...	0.49	0.49	0.49	43	43868	47	7	38	2	44
ASE_00245	RNaseP_nuc links to Rfam database...	0.89	0.86	0.93	67	55206	39	0	5	34	11
ASE_00246	RNaseP_nuc links to Rfam database...	0.30	0.33	0.27	22	48123	71	17	43	11	45
ASE_00247	RNaseP_nuc links to Rfam database...	0.18	0.19	0.17	12	54213	88	15	45	28	52
ASE_00252	RNaseP_bact_a links to Rfam database...	0.54	0.52	0.56	88	115284	71	5	63	3	80
ASE_00254	RNaseP_bact_a links to Rfam database...	0.49	0.46	0.52	38	36783	39	4	31	4	44
ASE_00255	RNaseP_bact_a links to Rfam database...	0.64	0.62	0.66	80	74570	45	7	34	4	50
ASE_00257	RNaseP_bact_a links to Rfam database...	0.55	0.55	0.55	53	50944	47	4	39	4	44
ASE_00258	RNaseP_nuc links to Rfam database...	0.74	0.72	0.76	39	26745	26	0	12	14	15
ASE_00263	RNaseP_bact_a links to Rfam database...	0.62	0.63	0.62	76	70377	49	5	42	2	44
ASE_00264	RNaseP_nuc links to Rfam database...	0.84	0.79	0.90	79	49053	24	0	9	15	21
ASE_00267	RNaseP_bact_a links to Rfam database...	0.32	0.31	0.34	27	45070	62	5	48	9	61
ASE_00270	RNaseP_bact_a links to Rfam database...	0.76	0.73	0.80	94	72272	29	4	20	5	34
ASE_00274	RNaseP_bact_a links to Rfam database...	0.45	0.44	0.46	45	55513	54	10	43	1	58
ASE_00277	RNaseP_bact_a links to Rfam database...	0.38	0.38	0.38	35	48112	61	9	49	3	56
ASE_00279	RNaseP_bact_a links to Rfam database...	0.68	0.66	0.71	67	53206	35	3	25	7	34
ASE_00280	RNaseP_bact_a links to Rfam database...	0.36	0.36	0.37	35	51909	65	4	55	6	63
ASE_00282	RNaseP_bact_a links to Rfam database...	0.56	0.55	0.57	70	77693	58	5	47	6	57
ASE_00283	RNaseP_bact_a links to Rfam database...	0.75	0.73	0.77	78	61675	30	3	20	7	29
ASE_00284	RNaseP_bact_a links to Rfam database...	0.62	0.60	0.64	65	58210	44	4	32	8	43
ASE_00285	RNaseP_bact_a links to Rfam database...	0.75	0.70	0.80	86	68899	28	3	18	7	36
ASE_00286	RNaseP_bact_a links to Rfam database...	0.43	0.42	0.43	39	46574	63	5	47	11	53
ASE_00287	RNaseP_bact_a links to Rfam database...	0.59	0.55	0.63	57	54856	39	2	31	6	46
ASE_00288	RNaseP_bact_a links to Rfam database...	0.47	0.45	0.48	42	45969	48	6	39	3	51
ASE_00289	RNaseP_bact_a links to Rfam database...	0.66	0.62	0.70	97	100886	45	4	38	3	60
ASE_00292	RNaseP_bact_a links to Rfam database...	0.62	0.58	0.66	80	81689	43	2	39	2	58
ASE_00294	RNaseP_bact_a links to Rfam database...	0.74	0.68	0.80	117	114335	32	2	27	3	54
ASE_00295	RNaseP_bact_a links to Rfam database...	0.63	0.60	0.66	79	73801	42	8	32	2	52
ASE_00296	RNaseP_bact_a links to Rfam database...	0.25	0.24	0.27	35	91676	98	8	87	3	110
ASE_00297	RNaseP_bact_a links to Rfam database...	0.50	0.50	0.51	49	52878	53	4	44	5	49
ASE_00298	RNaseP_bact_a links to Rfam database...	0.28	0.27	0.29	31	67420	79	9	68	2	82
ASE_00299	RNaseP_bact_a links to Rfam database...	0.49	0.48	0.51	48	49361	54	5	41	8	52
ASE_00303	RNaseP_nuc links to Rfam database...	0.54	0.58	0.50	55	67787	68	14	40	14	40
ASE_00305	RNaseP_bact_b links to Rfam database...	0.47	0.47	0.47	40	54529	56	10	36	10	45
ASE_00313	RNaseP_nuc links to Rfam database...	0.72	0.71	0.74	63	62396	45	4	18	23	26
ASE_00321	RNaseP_bact_b links to Rfam database...	0.40	0.40	0.41	35	54530	57	7	43	7	53
ASE_00328	RNaseP_bact_b links to Rfam database...	0.40	0.41	0.40	46	72656	75	3	66	6	66
ASE_00330	RNaseP_nuc links to Rfam database...	0.72	0.71	0.74	64	56193	44	3	20	21	26
ASE_00332	RNaseP_bact_a links to Rfam database...	0.56	0.54	0.59	75	81682	55	2	51	2	63
ASE_00337	RNaseP_nuc links to Rfam database...	0.52	0.54	0.51	38	39265	50	6	31	13	33
ASE_00338	RNaseP_nuc links to Rfam database...	0.67	0.63	0.72	62	66344	41	4	20	17	36
ASE_00340	RNaseP_bact_a links to Rfam database...	0.76	0.73	0.78	62	45977	26	6	11	9	23
ASE_00342	RNaseP_bact_a links to Rfam database...	0.57	0.54	0.60	62	62378	41	5	36	0	53
ASE_00343	RNaseP_bact_a links to Rfam database...	0.34	0.35	0.34	39	83321	88	9	67	12	74
ASE_00346	RNaseP_arch links to Rfam database...	0.31	0.30	0.32	29	48114	65	7	55	3	68
ASE_00359	RNaseP_arch links to Rfam database...	0.49	0.49	0.49	39	42698	49	3	38	8	41
ASE_00361	RNaseP_bact_a links to Rfam database...	0.51	0.49	0.53	62	75349	59	7	48	4	65
ASE_00362	RNaseP_bact_a links to Rfam database...	0.61	0.60	0.61	55	48115	39	6	29	4	36
ASE_00363	RNaseP_bact_a links to Rfam database...	0.53	0.54	0.53	51	51263	47	5	41	1	43
ASE_00364	RNaseP_bact_a links to Rfam database...	0.42	0.42	0.43	44	54182	63	4	55	4	61
ASE_00366	RNaseP_bact_a links to Rfam database...	0.54	0.56	0.53	55	58549	52	10	39	3	43
ASE_00367	RNaseP_bact_a links to Rfam database...	0.28	0.29	0.27	25	42979	68	8	59	1	61
ASE_00369	RNaseP_bact_a links to Rfam database...	0.56	0.55	0.58	59	55843	44	4	39	1	48
ASE_00370	RNaseP_bact_a links to Rfam database...	0.63	0.63	0.62	53	41820	33	7	25	1	31
ASE_00372	RNaseP_bact_a links to Rfam database...	0.63	0.62	0.65	62	51907	39	6	28	5	38
ASE_00374	RNaseP_bact_a links to Rfam database...	0.53	0.52	0.54	46	44765	40	8	31	1	42
ASE_00375	RNaseP_bact_a links to Rfam database...	0.70	0.66	0.74	73	60280	31	1	24	6	37
ASE_00376	RNaseP_bact_a links to Rfam database...	0.48	0.46	0.50	48	56857	52	4	44	4	57
ASE_00379	RNaseP_bact_a links to Rfam database...	0.57	0.55	0.60	49	45974	41	3	30	8	40
ASE_00380	RNaseP_bact_a links to Rfam database...	0.57	0.55	0.59	54	54854	41	2	36	3	45
ASE_00382	RNaseP_bact_a links to Rfam database...	0.49	0.49	0.50	41	41823	45	6	35	4	43
ASE_00383	RNaseP_bact_a links to Rfam database...	0.58	0.55	0.62	58	54521	40	3	33	4	47
ASE_00384	RNaseP_bact_a links to Rfam database...	0.41	0.39	0.43	36	48432	58	2	46	10	56
ASE_00385	RNaseP_bact_a links to Rfam database...	0.42	0.43	0.41	35	41819	53	6	45	2	46
ASE_00386	RNaseP_bact_a links to Rfam database...	0.65	0.65	0.65	62	50307	41	3	31	7	34
ASE_00387	RNaseP_bact_a links to Rfam database...	0.43	0.43	0.43	45	55841	59	6	53	0	59
ASE_00388	RNaseP_bact_a links to Rfam database...	0.43	0.42	0.44	37	45669	53	3	44	6	52
ASE_00390	RNaseP_bact_a links to Rfam database...	0.44	0.42	0.47	36	42118	52	6	35	11	49
ASE_00393	RNaseP_bact_a links to Rfam database...	0.37	0.35	0.39	33	47811	58	2	49	7	60
ASE_00394	RNaseP_bact_a links to Rfam database...	0.69	0.68	0.70	63	46881	29	5	22	2	30
ASE_00395	RNaseP_bact_a links to Rfam database...	0.65	0.63	0.68	53	41538	35	1	24	10	31
ASE_00396	RNaseP_bact_a links to Rfam database...	0.16	0.16	0.16	13	41535	71	2	66	3	70
ASE_00397	RNaseP_bact_a links to Rfam database...	0.54	0.54	0.54	57	54510	51	4	44	3	48
ASE_00398	RNaseP_bact_a links to Rfam database...	0.61	0.58	0.65	60	55852	37	1	32	4	44
ASE_00400	RNaseP_bact_a links to Rfam database...	0.53	0.53	0.54	56	57866	51	7	41	3	50
ASE_00401	RNaseP_bact_a links to Rfam database...	0.52	0.53	0.51	67	76897	65	13	51	1	59
ASE_00402	RNaseP_bact_a links to Rfam database...	0.41	0.40	0.43	34	42406	52	7	39	6	51
ASE_00403	RNaseP_bact_a links to Rfam database...	0.44	0.42	0.47	45	55849	55	4	47	4	62
ASE_00404	RNaseP_bact_a links to Rfam database...	0.55	0.54	0.57	46	42990	43	0	35	8	39
ASE_00411	RNaseP_bact_a links to Rfam database...	0.35	0.35	0.35	31	49366	63	7	51	5	58
ASE_00413	RNaseP_bact_a links to Rfam database...	0.55	0.58	0.52	47	44461	44	13	30	1	34
ASE_00415	RNaseP_bact_a links to Rfam database...	0.51	0.51	0.51	53	54843	53	7	43	3	50
ASE_00416	RNaseP_bact_a links to Rfam database...	0.65	0.61	0.68	78	77307	43	0	36	7	49
ASE_00417	RNaseP_arch links to Rfam database...	0.36	0.37	0.35	37	54508	73	10	60	3	63
ASE_00418	RNaseP_arch links to Rfam database...	0.20	0.21	0.20	16	38701	67	12	52	3	59
ASE_00419	RNaseP_bact_a links to Rfam database...	0.75	0.73	0.78	75	54850	26	5	16	5	28
ASE_00420	RNaseP_nuc links to Rfam database...	0.62	0.63	0.61	40	43299	55	3	23	29	23
ASE_00422	RNaseP_bact_a links to Rfam database...	0.44	0.44	0.45	41	46880	56	5	45	6	53
ASE_00426	RNaseP_bact_a links to Rfam database...	0.28	0.28	0.28	30	60967	78	7	71	0	78
ASE_00427	RNaseP_nuc links to Rfam database...	0.15	0.20	0.12	9	40678	81	17	51	13	37
ASE_00428	RNaseP_bact_a links to Rfam database...	0.51	0.50	0.53	62	76520	58	5	49	4	63
ASE_00430	RNaseP_bact_a links to Rfam database...	0.64	0.63	0.66	61	46878	39	5	27	7	36
ASE_00431	RNaseP_bact_a links to Rfam database...	0.53	0.49	0.56	47	46276	41	6	31	4	48
ASE_00434	RNaseP_bact_b links to Rfam database...	0.61	0.60	0.62	66	68159	48	7	33	8	44
ASE_00437	RNaseP_bact_a links to Rfam database...	0.42	0.39	0.46	53	79285	64	4	59	1	82
ASE_00438	RNaseP_bact_a links to Rfam database...	0.46	0.43	0.50	50	65965	52	3	48	1	66
ASE_00441	RNaseP_bact_a links to Rfam database...	0.77	0.72	0.83	81	64163	30	1	16	13	31
ASE_00447	RNaseP_bact_a links to Rfam database...	0.47	0.45	0.50	52	60274	55	1	51	3	64
ASE_00448	RNaseP_bact_a links to Rfam database...	0.22	0.22	0.23	25	64150	91	6	80	5	87
ASE_00451	RNaseP_bact_a links to Rfam database...	0.61	0.57	0.66	71	70768	40	2	35	3	54
ASE_00454	RNaseP_nuc links to Rfam database...	0.48	0.48	0.48	30	43302	59	2	31	26	33
CRW_00013	Intron_gpI links to Rfam database...	0.22	0.22	0.22	25	103625	113	13	77	23	90
CRW_00016	Intron_gpI links to Rfam database...	0.65	0.62	0.69	74	77313	47	5	29	13	46
CRW_00024	SSU_rRNA_archaea links to Rfam database...	0.78	0.77	0.79	351	1085158	132	17	75	40	107
CRW_00048	SSU_rRNA_bacteria links to Rfam database...	0.49	0.49	0.50	228	1170758	252	20	209	23	242
CRW_00054	SSU_rRNA_bacteria links to Rfam database...	0.46	0.46	0.46	208	1107368	260	31	209	20	248
CRW_00059	SSU_rRNA_bacteria links to Rfam database...	0.52	0.51	0.53	240	1172289	233	26	191	16	233
CRW_00061	SSU_rRNA_bacteria links to Rfam database...	0.55	0.54	0.55	259	1181483	231	27	184	20	217
CRW_00068	SSU_rRNA_bacteria links to Rfam database...	0.49	0.49	0.50	226	1108849	247	24	206	17	231
CRW_00096	SSU_rRNA_bacteria links to Rfam database...	0.46	0.46	0.47	214	1178420	264	32	214	18	251
CRW_00140	SSU_rRNA_bacteria links to Rfam database...	0.64	0.63	0.64	291	1135826	182	20	141	21	172
CRW_00141	SSU_rRNA_bacteria links to Rfam database...	0.59	0.58	0.60	274	1201566	212	26	159	27	202
CRW_00150	SSU_rRNA_bacteria links to Rfam database...	0.42	0.41	0.42	193	1152465	282	35	228	19	273
CRW_00152	SSU_rRNA_bacteria links to Rfam database...	0.64	0.62	0.65	293	1179965	180	30	128	22	178
CRW_00166	SSU_rRNA_bacteria links to Rfam database...	0.54	0.53	0.55	248	1190745	226	28	175	23	220
CRW_00173	SSU_rRNA_bacteria links to Rfam database...	0.29	0.29	0.29	127	1082216	323	37	276	10	318
CRW_00177	SSU_rRNA_bacteria links to Rfam database...	0.44	0.43	0.45	203	1178433	259	22	222	15	270
CRW_00196	SSU_rRNA_bacteria links to Rfam database...	0.47	0.46	0.48	220	1207772	267	24	219	24	255
CRW_00230	SSU_rRNA_bacteria links to Rfam database...	0.57	0.56	0.58	266	1198467	216	21	172	23	212
CRW_00245	SSU_rRNA_bacteria links to Rfam database...	0.38	0.38	0.38	172	1105880	289	44	232	13	281
CRW_00248	SSU_rRNA_bacteria links to Rfam database...	0.57	0.57	0.58	274	1218666	234	21	180	33	210
CRW_00250	SSU_rRNA_bacteria links to Rfam database...	0.44	0.44	0.45	210	1198459	274	34	223	17	268
CRW_00256	SSU_rRNA_bacteria links to Rfam database...	0.41	0.40	0.42	188	1192291	278	39	222	17	280
CRW_00270	SSU_rRNA_bacteria links to Rfam database...	0.44	0.43	0.45	196	1111850	260	40	200	20	259
CRW_00271	SSU_rRNA_bacteria links to Rfam database...	0.51	0.50	0.51	231	1122302	237	43	175	19	231
CRW_00273	SSU_rRNA_bacteria links to Rfam database...	0.59	0.58	0.60	258	1085174	195	26	143	26	188
CRW_00275	SSU_rRNA_bacteria links to Rfam database...	0.47	0.47	0.48	213	1114826	258	28	204	26	244
CRW_00277	SSU_rRNA_bacteria links to Rfam database...	0.38	0.38	0.38	172	1110338	300	45	240	15	281
CRW_00280	SSU_rRNA_bacteria links to Rfam database...	0.51	0.50	0.51	227	1117817	231	28	188	15	226
CRW_00281	SSU_rRNA_bacteria links to Rfam database...	0.30	0.30	0.29	138	1144872	347	41	290	16	326
CRW_00283	SSU_rRNA_bacteria links to Rfam database...	0.28	0.27	0.29	118	1015612	321	39	256	26	314
CRW_00289	SSU_rRNA_bacteria links to Rfam database...	0.46	0.45	0.48	214	1189204	258	34	201	23	262
CRW_00292	SSU_rRNA_bacteria links to Rfam database...	0.31	0.30	0.32	138	1123814	315	46	252	17	323
CRW_00366	SSU_rRNA_eukarya links to Rfam database...	0.35	0.36	0.33	174	1579230	395	88	261	46	308
CRW_00371	SSU_rRNA_eukarya links to Rfam database...	0.29	0.29	0.28	145	1611389	409	77	299	33	351
CRW_00379	SSU_rRNA_eukarya links to Rfam database...	0.42	0.43	0.41	227	2126401	423	55	270	98	307
CRW_00411	SSU_rRNA_eukarya links to Rfam database...	0.34	0.34	0.34	169	1615006	381	62	266	53	327
CRW_00414	SSU_rRNA_eukarya links to Rfam database...	0.27	0.28	0.26	140	1665694	436	77	314	45	355
CRW_00466	SSU_rRNA_bacteria links to Rfam database...	0.60	0.59	0.62	268	1116330	196	21	146	29	190
CRW_00589	SSU_rRNA_bacteria links to Rfam database...	0.18	0.18	0.18	78	1094024	374	34	324	16	367
CRW_00590	SSU_rRNA_bacteria links to Rfam database...	0.36	0.36	0.37	161	1119326	290	30	239	21	291
CRW_00591	SSU_rRNA_bacteria links to Rfam database...	0.57	0.56	0.59	251	1098476	205	23	153	29	195
CRW_00610	Intron_gpI links to Rfam database...	0.42	0.42	0.43	34	36235	46	6	40	0	47
CRW_00613	Intron_gpI links to Rfam database...	0.46	0.42	0.51	33	34915	41	2	30	9	45
CRW_00614	Intron_gpI links to Rfam database...	0.07	0.09	0.06	5	121689	141	24	53	64	52
CRW_00619	Intron_gpI links to Rfam database...	0.38	0.42	0.34	31	164933	138	25	36	77	42
CRW_00620	Intron_gpI links to Rfam database...	0.16	0.21	0.12	13	150869	161	32	61	68	50
CRW_00621	Intron_gpI links to Rfam database...	0.10	0.10	0.10	7	153108	157	13	53	91	64
CRW_00623	Intron_gpI links to Rfam database...	0.30	0.29	0.32	24	129719	123	11	41	71	59
CRW_00633	Intron_gpI links to Rfam database...	0.45	0.44	0.47	47	63445	58	10	44	4	59
CRW_00670	Intron_gpI links to Rfam database...	0.77	0.74	0.81	89	70015	26	0	21	5	31
CRW_00671	Intron_gpI links to Rfam database...	0.66	0.64	0.68	75	62725	41	8	27	6	42
CRW_00672	Intron_gpI links to Rfam database...	0.74	0.73	0.74	81	72281	36	10	18	8	30
CRW_00674	Intron_gpI links to Rfam database...	0.55	0.55	0.55	68	83312	61	8	48	5	56
CRW_00676	Intron_gpI links to Rfam database...	0.54	0.56	0.52	64	93406	75	17	41	17	51
CRW_00692	Intron_gpI links to Rfam database...	0.57	0.57	0.57	51	68545	54	15	24	15	39
CRW_00759	SSU_rRNA_eukarya links to Rfam database...	0.22	0.22	0.21	107	1636633	462	78	327	57	374
CRW_00763	SSU_rRNA_bacteria links to Rfam database...	0.38	0.37	0.40	165	1215603	304	24	228	52	281
CRW_00778	SSU_rRNA_bacteria links to Rfam database...	0.30	0.29	0.32	113	1201668	314	34	210	70	271
CRW_00789	SSU_rRNA_bacteria links to Rfam database...	0.36	0.36	0.36	160	1137342	302	44	240	18	287
CRW_00795	SSU_rRNA_bacteria links to Rfam database...	0.21	0.22	0.21	85	1152511	379	51	274	54	309
CRW_00849	SSU_rRNA_bacteria links to Rfam database...	0.49	0.48	0.49	227	1117798	259	23	212	24	243
CRW_01153	SSU_rRNA_eukarya links to Rfam database...	0.32	0.32	0.32	160	1606024	390	54	290	46	343
CRW_01171	SSU_rRNA_eukarya links to Rfam database...	0.32	0.33	0.31	167	1593473	402	81	284	37	339
CRW_01343	SSU_rRNA_archaea links to Rfam database...	0.37	0.37	0.37	160	977470	284	42	229	13	274
PDB_00012	mir-TAR links to Rfam database...	1.00	1.00	1.00	7	399	3	0	0	3	0
PDB_00213	Gammaretro_CES links to Rfam database...	0.87	0.80	0.94	33	5015	2	0	2	0	8
PDB_00553	mir-TAR links to Rfam database...	1.00	1.00	1.00	11	454	0	0	0	0	0
PDB_00703	SSU_rRNA_bacteria links to Rfam database...	0.53	0.50	0.56	246	1073408	220	17	174	29	249
PDB_00716	HDV_ribozyme links to Rfam database...	-0.01	0.00	0.00	0	2677	25	1	23	1	23
PDB_00741	Entero_5_CRE links to Rfam database...	0.87	0.76	1.00	13	690	0	0	0	0	4
PDB_00810	s2m links to Rfam database...	0.77	0.71	0.86	12	1067	2	0	2	0	5
PDB_00827	Intron_gpI links to Rfam database...	0.67	0.59	0.76	48	26965	16	0	15	1	33
PDB_00828	Purine links to Rfam database...	0.88	0.78	1.00	21	2464	0	0	0	0	6
PDB_00829	Purine links to Rfam database...	0.82	0.71	0.94	17	2260	1	0	1	0	7
PDB_00854	SSU_rRNA_bacteria links to Rfam database...	0.55	0.53	0.56	284	1500271	276	22	201	53	251
PDB_00876	HIV_FE links to Rfam database...	0.97	0.95	1.00	19	971	0	0	0	0	1
PDB_00919	RNaseP_bact_a links to Rfam database...	0.50	0.47	0.53	48	44163	45	3	39	3	55
PDB_01050	UnaL2 links to Rfam database...	0.96	0.92	1.00	12	618	2	0	0	2	1
PDB_01051	Telomerase-cil links to Rfam database...	0.75	0.69	0.82	9	892	6	0	2	4	4
PDB_01088	SSU_rRNA_bacteria links to Rfam database...	0.36	0.35	0.37	191	1470959	352	45	275	32	356
PDB_01092	glmS links to Rfam database...	0.69	0.60	0.79	31	10114	11	1	7	3	21
PDB_01103	SSU_rRNA_bacteria links to Rfam database...	0.56	0.54	0.58	306	1605999	254	32	191	31	256
PDB_01105	SSU_rRNA_bacteria links to Rfam database...	0.60	0.58	0.63	313	1433471	221	15	172	34	227
PDB_01120	SSU_rRNA_bacteria links to Rfam database...	0.46	0.43	0.49	228	1204659	250	31	210	9	299
PDB_01152	HIV_FS2 links to Rfam database...	0.96	0.93	1.00	13	548	0	0	0	0	1
PDB_01273	SSU_rRNA_bacteria links to Rfam database...	0.51	0.48	0.53	237	1117812	242	21	190	31	254
RFA_00389	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00390	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00391	Hammerhead_3 links to Rfam database...	0.93	0.87	1.00	13	1418	2	0	0	2	2
RFA_00396	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	2	0	0	2	1
RFA_00402	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	1	0	0	1	0
RFA_00409	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	2	0	0	2	1
RFA_00416	Hammerhead_3 links to Rfam database...	0.93	0.93	0.93	14	1470	4	0	1	3	1
RFA_00425	Hammerhead_3 links to Rfam database...	0.93	0.87	1.00	13	1640	5	0	0	5	2
RFA_00427	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1471	3	0	0	3	1
RFA_00433	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00434	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00436	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00440	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1470	2	0	0	2	0
RFA_00442	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00444	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1525	2	0	0	2	0
RFA_00446	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1471	3	0	0	3	1
RFA_00449	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1471	3	0	0	3	1
RFA_00582	Y_RNA links to Rfam database...	0.87	0.87	0.87	13	5980	23	0	2	21	2
RFA_00583	Y_RNA links to Rfam database...	0.41	0.40	0.43	6	4936	22	0	8	14	9
RFA_00585	Y_RNA links to Rfam database...	0.87	0.87	0.87	13	4836	13	0	2	11	2
RFA_00587	Y_RNA links to Rfam database...	0.87	0.87	0.87	13	4836	14	0	2	12	2
RFA_00588	Y_RNA links to Rfam database...	0.79	0.73	0.85	11	4547	14	0	2	12	4
RFA_00589	Y_RNA links to Rfam database...	0.79	0.73	0.85	11	4358	18	0	2	16	4
RFA_00594	Y_RNA links to Rfam database...	0.83	0.80	0.86	12	2761	13	0	2	11	3
RFA_00596	Y_RNA links to Rfam database...	0.00	0.00	0.00	0	5980	24	4	11	9	15
RFA_00597	Telomerase-vert links to Rfam database...	0.51	0.51	0.51	56	97794	82	5	48	29	53
RFA_00599	Telomerase-vert links to Rfam database...	0.67	0.70	0.64	78	101353	66	16	28	22	33
RFA_00601	Telomerase-vert links to Rfam database...	0.09	0.11	0.08	12	99092	139	35	96	8	102
RFA_00602	Telomerase-vert links to Rfam database...	0.50	0.53	0.47	62	101344	91	18	51	22	54
RFA_00603	Telomerase-cil links to Rfam database...	0.64	0.69	0.60	24	13490	20	4	12	4	11
RFA_00604	Telomerase-cil links to Rfam database...	0.72	0.74	0.70	26	13493	24	2	9	13	9
RFA_00606	Telomerase-cil links to Rfam database...	0.67	0.67	0.68	26	21283	26	7	5	14	13
RFA_00607	Telomerase-cil links to Rfam database...	0.57	0.61	0.54	22	17725	25	6	13	6	14
RFA_00609	Telomerase-cil links to Rfam database...	0.75	0.76	0.74	28	17917	28	2	8	18	9
RFA_00610	Telomerase-cil links to Rfam database...	0.77	0.76	0.78	28	17169	23	2	6	15	9
RFA_00611	Telomerase-cil links to Rfam database...	0.79	0.77	0.82	27	13008	13	0	6	7	8
RFA_00613	Telomerase-cil links to Rfam database...	0.61	0.60	0.62	21	12846	17	4	9	4	14
RFA_00615	Telomerase-cil links to Rfam database...	0.51	0.51	0.51	18	13331	18	8	9	1	17
RFA_00620	Telomerase-cil links to Rfam database...	0.64	0.62	0.67	24	21909	26	3	9	14	15
RFA_00621	RNase_MRP links to Rfam database...	0.39	0.39	0.38	30	46281	63	7	42	14	46
RFA_00623	RNase_MRP links to Rfam database...	0.46	0.45	0.47	35	43881	54	5	35	14	43
RFA_00624	RNase_MRP links to Rfam database...	0.43	0.46	0.41	28	30067	45	5	35	5	33
RFA_00626	rne5 links to Rfam database...	0.89	0.86	0.93	75	56535	31	2	4	25	12
RFA_00627	rne5 links to Rfam database...	0.48	0.47	0.48	41	56868	50	10	34	6	46
RFA_00628	rne5 links to Rfam database...	0.83	0.80	0.85	69	57210	38	1	11	26	17
RFA_00630	rne5 links to Rfam database...	0.60	0.60	0.60	52	56866	46	8	27	11	35
RFA_00632	HDV_ribozyme links to Rfam database...	0.40	0.39	0.41	11	4068	18	0	16	2	17
RFA_00636	HDV_ribozyme links to Rfam database...	0.42	0.43	0.43	12	3977	17	2	14	1	16
RFA_00639	7SK links to Rfam database...	0.49	0.49	0.49	43	54528	61	8	36	17	44
RFA_00644	Vimentin3 links to Rfam database...	-0.01	0.00	0.00	0	2681	21	4	16	1	18
RFA_00645	Vimentin3 links to Rfam database...	-0.01	0.00	0.00	0	2401	15	3	11	1	18
RFA_00649	Vimentin3 links to Rfam database...	0.65	0.61	0.69	11	2129	8	1	4	3	7
RFA_00653	Vimentin3 links to Rfam database...	0.34	0.33	0.35	6	2128	12	3	8	1	12
RFA_00654	Vimentin3 links to Rfam database...	0.27	0.28	0.28	5	2397	14	2	11	1	13
RFA_00658	Hammerhead_1 links to Rfam database...	0.69	0.64	0.75	9	1116	5	0	3	2	5
RFA_00659	Hammerhead_1 links to Rfam database...	0.30	0.29	0.33	4	1116	10	1	7	2	10
RFA_00664	Hammerhead_1 links to Rfam database...	0.07	0.07	0.09	1	979	11	0	10	1	13
RFA_00667	Hammerhead_1 links to Rfam database...	0.30	0.29	0.33	4	978	8	1	7	0	10
RFA_00668	Hammerhead_1 links to Rfam database...	0.41	0.43	0.40	6	975	9	0	9	0	8
RFA_00672	Hammerhead_1 links to Rfam database...	0.17	0.15	0.20	2	893	9	0	8	1	11
RFA_00673	Hammerhead_1 links to Rfam database...	0.42	0.36	0.50	5	1118	6	0	5	1	9
RFA_00674	Hammerhead_1 links to Rfam database...	0.69	0.71	0.67	10	1113	6	0	5	1	4
RFA_00675	Hammerhead_1 links to Rfam database...	0.29	0.29	0.31	4	977	9	1	8	0	10
RFA_00677	Hammerhead_1 links to Rfam database...	0.42	0.43	0.43	6	976	9	0	8	1	8
RFA_00678	Hammerhead_1 links to Rfam database...	0.66	0.64	0.69	9	933	4	0	4	0	5
RFA_00680	Hammerhead_1 links to Rfam database...	0.74	0.71	0.77	10	1115	6	0	3	3	4
RFA_00684	Hammerhead_1 links to Rfam database...	0.66	0.64	0.69	9	977	5	0	4	1	5
RFA_00685	Hammerhead_1 links to Rfam database...	0.42	0.36	0.50	5	980	6	0	5	1	9
RFA_00695	Hammerhead_1 links to Rfam database...	0.67	0.64	0.69	9	7008	29	1	3	25	5
RFA_00703	Hammerhead_1 links to Rfam database...	0.67	0.64	0.69	9	4265	18	1	3	14	5
RFA_00704	Hammerhead_1 links to Rfam database...	0.48	0.43	0.55	6	979	7	0	5	2	8
RFA_00705	Hammerhead_1 links to Rfam database...	0.69	0.71	0.67	10	1020	5	0	5	0	4
RFA_00706	Hammerhead_1 links to Rfam database...	0.44	0.36	0.56	5	1026	4	0	4	0	9
RFA_00707	Hammerhead_1 links to Rfam database...	0.07	0.07	0.10	1	1025	9	3	6	0	13
RFA_00708	Hammerhead_1 links to Rfam database...	0.47	0.36	0.63	5	1027	3	0	3	0	9
RFA_00709	Hammerhead_1 links to Rfam database...	0.16	0.14	0.20	2	980	9	0	8	1	12
RFA_00710	Hammerhead_1 links to Rfam database...	0.23	0.21	0.27	3	979	8	0	8	0	11
RFA_00711	Hammerhead_1 links to Rfam database...	0.40	0.36	0.45	5	1024	6	0	6	0	9
RFA_00716	Hammerhead_1 links to Rfam database...	0.06	0.07	0.08	1	933	12	0	12	0	13
RFA_00717	Hammerhead_1 links to Rfam database...	0.64	0.64	0.64	9	889	5	0	5	0	5
RFA_00730	s2m links to Rfam database...	0.69	0.67	0.73	8	892	4	1	2	1	4
RFA_00731	s2m links to Rfam database...	0.66	0.67	0.67	8	891	5	1	3	1	4
RFA_00733	s2m links to Rfam database...	0.66	0.67	0.67	8	891	5	1	3	1	4
RFA_00734	s2m links to Rfam database...	0.61	0.67	0.57	8	889	8	1	5	2	4
RFA_00736	s2m links to Rfam database...	0.66	0.67	0.67	8	891	5	1	3	1	4
RFA_00737	s2m links to Rfam database...	1.00	1.00	1.00	12	891	1	0	0	1	0
RFA_00745	s2m links to Rfam database...	0.66	0.67	0.67	8	934	5	1	3	1	4
RFA_00749	s2m links to Rfam database...	0.66	0.67	0.67	8	891	5	1	3	1	4
RFA_00758	s2m links to Rfam database...	0.96	0.92	1.00	11	892	1	0	0	1	1
RFA_00762	s2m links to Rfam database...	0.64	0.67	0.62	8	890	6	1	4	1	4
RFA_00763	s2m links to Rfam database...	1.00	1.00	1.00	12	891	1	0	0	1	0
RFA_00764	s2m links to Rfam database...	0.66	0.67	0.67	8	891	5	1	3	1	4
RFA_00765	s2m links to Rfam database...	1.00	1.00	1.00	12	891	1	0	0	1	0
RFA_00767	Corona_pk3 links to Rfam database...	0.63	0.56	0.71	10	1877	5	0	4	1	8
RFA_00768	Corona_pk3 links to Rfam database...	0.48	0.44	0.53	8	1876	8	1	6	1	10
RFA_00769	Corona_pk3 links to Rfam database...	0.55	0.56	0.56	10	1935	10	3	5	2	8
RFA_00770	Corona_pk3 links to Rfam database...	0.68	0.56	0.83	10	2004	6	0	2	4	8
RFA_00773	Corona_pk3 links to Rfam database...	0.71	0.56	0.91	10	1942	5	1	0	4	8
RFA_00781	Gammaretro_CES links to Rfam database...	0.55	0.56	0.55	18	5017	17	2	13	2	14
RFA_00786	Gammaretro_CES links to Rfam database...	0.71	0.72	0.70	23	5017	12	2	8	2	9
RFA_00791	Gammaretro_CES links to Rfam database...	0.50	0.50	0.52	16	5120	16	3	12	1	16
RFA_00792	Gammaretro_CES links to Rfam database...	0.90	0.88	0.93	28	5020	3	0	2	1	4
RFA_00801	Gammaretro_CES links to Rfam database...	0.59	0.59	0.59	19	5018	14	0	13	1	13
RFA_00808	RydC links to Rfam database...	-0.01	0.00	0.00	0	2001	16	2	13	1	16
RFA_00809	RydC links to Rfam database...	0.36	0.38	0.35	6	2128	12	1	10	1	10
RFA_00814	R2_retro_el links to Rfam database...	0.35	0.37	0.33	15	25155	42	7	23	12	26
RFA_00815	R2_retro_el links to Rfam database...	0.56	0.61	0.51	25	24482	35	8	16	11	16
RFA_00816	R2_retro_el links to Rfam database...	0.59	0.66	0.53	27	23169	33	13	11	9	14
RFA_00818	R2_retro_el links to Rfam database...	0.19	0.22	0.17	9	20247	48	19	26	3	32
RFA_00819	R2_retro_el links to Rfam database...	0.96	0.95	0.98	39	27926	32	0	1	31	2
RFA_00820	bicoid_3 links to Rfam database...	0.90	0.91	0.88	145	151361	34	1	18	15	15
RFA_00830	bicoid_3 links to Rfam database...	0.50	0.47	0.53	73	152490	110	5	60	45	81
SRP_00001	Bacteria_large_SRP links to Rfam database...	0.89	0.90	0.88	36	6745	5	1	4	0	4
SRP_00002	Metazoa_SRP links to Rfam database...	0.81	0.79	0.82	81	45051	20	4	14	2	21
SRP_00006	Metazoa_SRP links to Rfam database...	0.82	0.81	0.84	82	45655	19	3	13	3	19
SRP_00008	Bacteria_small_SRP links to Rfam database...	0.70	0.72	0.69	18	2900	9	0	8	1	7
SRP_00011	Plant_SRP links to Rfam database...	0.43	0.42	0.45	44	46262	54	4	50	0	60
SRP_00015	Plant_SRP links to Rfam database...	0.54	0.53	0.55	52	46265	48	8	35	5	47
SRP_00016	Archaea_SRP links to Rfam database...	0.92	0.89	0.94	97	47792	8	0	6	2	12
SRP_00018	Fungi_SRP links to Rfam database...	0.71	0.68	0.73	55	38428	33	1	19	13	26
SRP_00019	Fungi_SRP links to Rfam database...	0.91	0.89	0.93	81	35959	12	4	2	6	10
SRP_00024	Bacteria_large_SRP links to Rfam database...	0.68	0.70	0.67	61	37584	31	4	26	1	26
SRP_00026	Bacteria_large_SRP links to Rfam database...	0.58	0.59	0.58	52	36766	46	4	34	8	36
SRP_00027	Bacteria_large_SRP links to Rfam database...	0.64	0.62	0.67	54	37047	28	3	24	1	33
SRP_00030	Bacteria_large_SRP links to Rfam database...	0.74	0.75	0.73	66	36766	26	4	20	2	22
SRP_00031	Bacteria_large_SRP links to Rfam database...	0.64	0.64	0.63	57	36225	37	4	29	4	32
SRP_00037	Bacteria_large_SRP links to Rfam database...	0.60	0.60	0.60	52	36498	37	4	31	2	35
SRP_00038	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	5019	31	2	29	0	33
SRP_00040	Bacteria_small_SRP links to Rfam database...	0.70	0.74	0.66	23	5530	14	1	11	2	8
SRP_00042	Bacteria_small_SRP links to Rfam database...	0.38	0.40	0.37	10	3978	19	1	16	2	15
SRP_00043	Bacteria_small_SRP links to Rfam database...	0.45	0.48	0.42	14	5017	23	4	15	4	15
SRP_00044	Bacteria_small_SRP links to Rfam database...	0.77	0.75	0.80	24	6075	10	1	5	4	8
SRP_00051	Bacteria_small_SRP links to Rfam database...	0.09	0.10	0.09	3	5428	29	1	28	0	27
SRP_00054	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	5531	34	3	31	0	32
SRP_00060	Metazoa_SRP links to Rfam database...	0.94	0.93	0.96	93	44454	10	0	4	6	7
SRP_00061	Metazoa_SRP links to Rfam database...	0.94	0.93	0.95	93	44752	12	0	5	7	7
SRP_00069	Fungi_SRP links to Rfam database...	0.57	0.55	0.59	47	34374	34	1	31	2	38
SRP_00070	Fungi_SRP links to Rfam database...	0.28	0.32	0.25	39	126599	128	30	88	10	82
SRP_00072	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6296	32	3	29	0	29
SRP_00073	Fungi_SRP links to Rfam database...	0.65	0.70	0.60	50	38977	46	8	25	13	21
SRP_00074	Bacteria_small_SRP links to Rfam database...	0.39	0.41	0.38	12	6523	24	3	17	4	17
SRP_00075	Bacteria_small_SRP links to Rfam database...	0.82	0.79	0.84	27	5533	8	0	5	3	7
SRP_00077	Bacteria_small_SRP links to Rfam database...	0.15	0.16	0.15	6	6630	34	4	30	0	31
SRP_00079	Plant_SRP links to Rfam database...	0.52	0.55	0.50	48	41809	53	8	40	5	40
SRP_00081	Bacteria_small_SRP links to Rfam database...	0.68	0.74	0.62	23	5528	14	1	13	0	8
SRP_00084	Bacteria_small_SRP links to Rfam database...	0.81	0.82	0.80	28	5425	7	1	6	0	6
SRP_00085	Plant_SRP links to Rfam database...	0.64	0.63	0.65	64	45352	37	5	30	2	37
SRP_00086	Metazoa_SRP links to Rfam database...	0.71	0.71	0.70	71	44152	31	3	27	1	29
SRP_00087	Fungi_SRP links to Rfam database...	0.24	0.28	0.21	16	37323	71	20	42	9	42
SRP_00088	Bacteria_large_SRP links to Rfam database...	0.67	0.69	0.66	61	34098	32	3	29	0	28
SRP_00089	Bacteria_large_SRP links to Rfam database...	0.82	0.81	0.84	73	35691	14	1	13	0	17
SRP_00090	Bacteria_large_SRP links to Rfam database...	0.69	0.66	0.72	59	35429	25	1	22	2	31
SRP_00091	Fungi_SRP links to Rfam database...	0.80	0.82	0.79	78	52876	26	4	17	5	17
SRP_00094	Bacteria_small_SRP links to Rfam database...	0.86	0.88	0.84	21	4070	4	0	4	0	3
SRP_00095	Bacteria_small_SRP links to Rfam database...	0.81	0.84	0.78	21	3978	6	1	5	0	4
SRP_00098	Bacteria_small_SRP links to Rfam database...	0.66	0.68	0.66	25	6403	14	1	12	1	12
SRP_00099	Plant_SRP links to Rfam database...	0.57	0.57	0.57	54	44755	43	5	36	2	41
SRP_00104	Fungi_SRP links to Rfam database...	0.41	0.46	0.36	32	34365	59	12	44	3	37
SRP_00105	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	5532	33	4	29	0	34
SRP_00106	Bacteria_large_SRP links to Rfam database...	0.67	0.76	0.59	19	5221	16	4	9	3	6
SRP_00107	Bacteria_small_SRP links to Rfam database...	0.13	0.16	0.12	3	3629	26	6	17	3	16
SRP_00117	Metazoa_SRP links to Rfam database...	0.63	0.62	0.64	63	45352	39	1	35	3	39
SRP_00124	Metazoa_SRP links to Rfam database...	0.53	0.52	0.55	44	37048	38	5	31	2	41
SRP_00127	Fungi_SRP links to Rfam database...	0.61	0.61	0.60	73	72268	55	8	41	6	46
SRP_00128	Bacteria_small_SRP links to Rfam database...	0.77	0.81	0.74	29	6747	12	1	9	2	7
SRP_00130	Archaea_SRP links to Rfam database...	0.24	0.24	0.24	23	49676	72	10	61	1	74
SRP_00136	Fungi_SRP links to Rfam database...	0.35	0.39	0.31	28	44163	69	13	49	7	43
SRP_00141	Bacteria_small_SRP links to Rfam database...	0.86	0.85	0.88	35	6288	5	1	4	0	6
SRP_00142	Archaea_SRP links to Rfam database...	0.57	0.58	0.57	54	45961	43	5	36	2	39
SRP_00143	Archaea_SRP links to Rfam database...	0.36	0.38	0.35	38	49662	72	8	62	2	63
SRP_00144	Archaea_SRP links to Rfam database...	0.74	0.74	0.74	70	46571	31	1	23	7	24
SRP_00145	Bacteria_small_SRP links to Rfam database...	0.96	0.98	0.95	39	6287	3	1	1	1	1
SRP_00146	Bacteria_small_SRP links to Rfam database...	0.93	0.94	0.92	34	5216	3	1	2	0	2
SRP_00148	Fungi_SRP links to Rfam database...	0.31	0.33	0.29	29	49987	81	4	66	11	58
SRP_00152	Plant_SRP links to Rfam database...	0.56	0.56	0.57	58	45651	45	1	43	1	45
SRP_00157	Fungi_SRP links to Rfam database...	0.37	0.40	0.34	29	44167	65	15	42	8	43
SRP_00158	Fungi_SRP links to Rfam database...	0.30	0.37	0.25	42	124084	130	48	77	5	73
SRP_00160	Fungi_SRP links to Rfam database...	0.41	0.41	0.42	53	86194	74	4	69	1	77
SRP_00161	Bacteria_small_SRP links to Rfam database...	0.80	0.82	0.78	18	2827	5	0	5	0	4
SRP_00162	Bacteria_small_SRP links to Rfam database...	0.81	0.83	0.79	19	2902	6	0	5	1	4
SRP_00164	Bacteria_small_SRP links to Rfam database...	0.87	0.89	0.86	31	6867	6	1	4	1	4
SRP_00171	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	45348	103	15	88	0	88
SRP_00173	Bacteria_large_SRP links to Rfam database...	0.72	0.70	0.75	63	38142	29	1	20	8	27
SRP_00174	Bacteria_large_SRP links to Rfam database...	0.74	0.76	0.72	65	38691	29	8	17	4	21
SRP_00175	Fungi_SRP links to Rfam database...	0.51	0.52	0.49	44	44461	52	7	39	6	40
SRP_00178	Plant_SRP links to Rfam database...	0.83	0.78	0.87	80	45661	14	1	11	2	22
SRP_00181	Plant_SRP links to Rfam database...	0.33	0.31	0.35	32	45964	60	1	59	0	70
SRP_00182	Plant_SRP links to Rfam database...	0.76	0.73	0.79	74	45962	21	3	17	1	27
SRP_00184	Plant_SRP links to Rfam database...	0.62	0.60	0.64	60	45962	39	2	32	5	40
SRP_00197	Archaea_SRP links to Rfam database...	0.24	0.24	0.25	24	49359	72	7	65	0	77
SRP_00199	Archaea_SRP links to Rfam database...	0.67	0.66	0.68	69	50939	34	2	30	2	36
SRP_00200	Bacteria_small_SRP links to Rfam database...	0.44	0.44	0.43	16	6866	21	2	19	0	20
SRP_00201	Archaea_SRP links to Rfam database...	0.84	0.84	0.84	93	47784	20	5	13	2	18
SRP_00202	Archaea_SRP links to Rfam database...	0.95	0.93	0.96	109	54172	6	0	4	2	8
SRP_00203	Archaea_SRP links to Rfam database...	0.73	0.75	0.72	79	48718	37	3	28	6	26
SRP_00204	Archaea_SRP links to Rfam database...	0.68	0.68	0.69	69	49041	33	4	27	2	33
SRP_00206	Archaea_SRP links to Rfam database...	0.84	0.83	0.84	90	47788	18	5	12	1	18
SRP_00208	Archaea_SRP links to Rfam database...	0.83	0.82	0.85	83	46567	18	2	13	3	18
SRP_00209	Bacteria_small_SRP links to Rfam database...	0.73	0.74	0.71	20	4628	8	0	8	0	7
SRP_00216	Bacteria_small_SRP links to Rfam database...	0.93	0.93	0.93	25	3376	3	1	1	1	2
SRP_00222	Bacteria_small_SRP links to Rfam database...	0.94	0.96	0.92	24	3055	3	1	1	1	1
SRP_00227	Bacteria_small_SRP links to Rfam database...	0.89	0.90	0.88	28	5119	4	1	3	0	3
SRP_00230	Fungi_SRP links to Rfam database...	0.80	0.81	0.79	73	39529	23	3	16	4	17
SRP_00231	Bacteria_small_SRP links to Rfam database...	0.46	0.47	0.46	16	5425	19	1	18	0	18
SRP_00233	Bacteria_small_SRP links to Rfam database...	0.91	0.88	0.94	29	5120	2	0	2	0	4
SRP_00234	Bacteria_large_SRP links to Rfam database...	0.77	0.77	0.78	66	36230	25	1	18	6	20
SRP_00241	Plant_SRP links to Rfam database...	0.54	0.59	0.51	48	45961	50	11	36	3	34
SRP_00243	Bacteria_small_SRP links to Rfam database...	0.90	0.87	0.93	27	5122	3	0	2	1	4
SRP_00250	Bacteria_small_SRP links to Rfam database...	0.74	0.75	0.73	27	6749	13	1	9	3	9
SRP_00251	Bacteria_small_SRP links to Rfam database...	0.70	0.72	0.68	26	6983	12	1	11	0	10
SRP_00252	Metazoa_SRP links to Rfam database...	0.62	0.64	0.59	57	49045	42	12	27	3	32
SRP_00253	Metazoa_SRP links to Rfam database...	0.61	0.63	0.59	57	49359	44	7	32	5	33
SRP_00254	Fungi_SRP links to Rfam database...	0.43	0.48	0.39	29	32311	50	13	32	5	32
SRP_00257	Metazoa_SRP links to Rfam database...	0.85	0.87	0.84	94	50928	20	4	14	2	14
SRP_00265	Fungi_SRP links to Rfam database...	0.56	0.62	0.52	45	41241	55	9	33	13	28
SRP_00267	Metazoa_SRP links to Rfam database...	0.87	0.88	0.87	84	44454	19	0	13	6	12
SRP_00271	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	3215	25	3	22	0	24
SRP_00273	Bacteria_small_SRP links to Rfam database...	0.86	0.88	0.85	35	6745	8	1	5	2	5
SRP_00274	Bacteria_small_SRP links to Rfam database...	0.91	0.92	0.90	35	6864	5	1	3	1	3
SRP_00276	Archaea_SRP links to Rfam database...	0.86	0.85	0.86	94	50612	16	5	10	1	16
SRP_00278	Archaea_SRP links to Rfam database...	0.72	0.72	0.71	76	45949	33	4	27	2	29
SRP_00282	Metazoa_SRP links to Rfam database...	0.32	0.37	0.28	23	43284	67	19	39	9	40
SRP_00286	Fungi_SRP links to Rfam database...	0.57	0.56	0.59	97	136861	77	4	64	9	77
SRP_00287	Fungi_SRP links to Rfam database...	0.64	0.65	0.64	105	141613	74	8	52	14	57
SRP_00290	Fungi_SRP links to Rfam database...	0.66	0.66	0.65	89	100440	57	2	45	10	46
SRP_00292	Fungi_SRP links to Rfam database...	0.58	0.55	0.61	96	137392	69	2	60	7	77
SRP_00294	Fungi_SRP links to Rfam database...	0.61	0.59	0.62	99	129126	67	4	57	6	68
SRP_00295	Bacteria_small_SRP links to Rfam database...	0.88	0.87	0.89	33	6866	6	1	3	2	5
SRP_00299	Metazoa_SRP links to Rfam database...	0.68	0.68	0.68	67	44155	32	3	28	1	32
SRP_00301	Fungi_SRP links to Rfam database...	0.85	0.85	0.86	73	32555	18	1	11	6	13
SRP_00302	Fungi_SRP links to Rfam database...	0.39	0.40	0.39	32	41533	61	7	44	10	49
SRP_00303	Bacteria_small_SRP links to Rfam database...	0.60	0.63	0.59	20	6636	14	1	13	0	12
SRP_00308	Bacteria_large_SRP links to Rfam database...	0.55	0.55	0.56	48	36229	42	9	29	4	40
SRP_00310	Bacteria_small_SRP links to Rfam database...	0.81	0.83	0.79	19	2902	6	0	5	1	4
SRP_00312	Bacteria_small_SRP links to Rfam database...	0.29	0.30	0.29	8	4158	20	4	16	0	19
SRP_00315	Bacteria_small_SRP links to Rfam database...	0.78	0.78	0.78	18	2903	5	0	5	0	5
SRP_00317	Metazoa_SRP links to Rfam database...	0.93	0.89	0.98	87	45061	10	0	2	8	11
SRP_00318	Bacteria_small_SRP links to Rfam database...	0.78	0.78	0.78	18	2980	5	0	5	0	5
SRP_00321	Archaea_SRP links to Rfam database...	0.77	0.77	0.78	83	47479	27	3	21	3	25
SRP_00322	Archaea_SRP links to Rfam database...	0.60	0.60	0.61	65	48409	43	2	40	1	44
SRP_00323	Archaea_SRP links to Rfam database...	0.90	0.89	0.90	95	47173	14	0	10	4	12
SRP_00324	Bacteria_small_SRP links to Rfam database...	0.58	0.62	0.55	18	5323	15	4	11	0	11
SRP_00325	Bacteria_small_SRP links to Rfam database...	1.00	1.00	1.00	33	4338	0	0	0	0	0
SRP_00330	Archaea_SRP links to Rfam database...	0.44	0.44	0.45	42	49992	54	2	50	2	53
SRP_00332	Archaea_SRP links to Rfam database...	0.90	0.90	0.91	95	50299	15	1	8	6	11
SRP_00335	Bacteria_large_SRP links to Rfam database...	0.32	0.44	0.24	17	35173	76	26	29	21	22
SRP_00337	Bacteria_large_SRP links to Rfam database...	0.73	0.71	0.76	65	35425	23	1	20	2	26
SRP_00338	Bacteria_small_SRP links to Rfam database...	0.92	0.92	0.92	33	5424	4	0	3	1	3
SRP_00339	Archaea_SRP links to Rfam database...	0.56	0.56	0.56	53	44456	45	5	37	3	41
SRP_00340	Metazoa_SRP links to Rfam database...	0.55	0.59	0.52	48	41235	47	9	36	2	34
SRP_00342	Bacteria_small_SRP links to Rfam database...	0.57	0.60	0.56	15	3978	17	1	11	5	10
SRP_00347	Metazoa_SRP links to Rfam database...	0.82	0.80	0.84	77	46573	21	3	12	6	19
SRP_00350	Bacteria_small_SRP links to Rfam database...	0.26	0.26	0.27	7	3890	19	2	17	0	20
SRP_00356	Bacteria_small_SRP links to Rfam database...	0.65	0.67	0.65	20	5019	14	2	9	3	10
SRP_00357	Bacteria_small_SRP links to Rfam database...	0.93	0.92	0.94	33	5321	3	1	1	1	3
SRP_00361	Plant_SRP links to Rfam database...	0.71	0.71	0.70	64	41814	37	3	24	10	26
SRP_00365	Bacteria_small_SRP links to Rfam database...	0.75	0.74	0.77	20	3377	6	0	6	0	7
SRP_00367	Bacteria_small_SRP links to Rfam database...	0.83	0.86	0.81	30	6749	7	2	5	0	5
SRP_00369	Bacteria_small_SRP links to Rfam database...	0.93	0.91	0.94	32	5744	2	1	1	0	3
SRP_00371	Fungi_SRP links to Rfam database...	0.53	0.54	0.52	44	36231	43	3	37	3	38
SRP_00382	Fungi_SRP links to Rfam database...	0.58	0.57	0.58	97	141612	80	6	63	11	73
SRP_00383	Bacteria_small_SRP links to Rfam database...	0.12	0.13	0.13	3	3216	21	3	18	0	21

^top

Performance of RSpredict(seed) - scored lower in this pairwise comparison

1. Total counts & total scores for RSpredict(seed)

Total Base Pair Counts
Total TP	15899
Total TN	89729482
Total FP	11990
Total FP CONTRA	1420
Total FP INCONS	8658
Total FP COMP	1912
Total FN	49268

Total Scores
MCC	0.386
Average MCC ± 95% Confidence Intervals	0.256 ± 0.025
Sensitivity	0.244
Positive Predictive Value	0.612
Nr of predictions	572

^top

2. Individual counts for RSpredict(seed) [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00001	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	34191	0	0	0	0	75
ASE_00002	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	35511	0	0	0	0	73
ASE_00004	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	47894	2	0	1	1	97
ASE_00005	RNaseP_bact_a links to Rfam database...	0.14	0.03	0.57	4	57963	3	0	3	0	113
ASE_00006	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	47583	3	0	3	0	93
ASE_00007	RNaseP_bact_a links to Rfam database...	0.16	0.05	0.56	5	59676	4	0	4	0	105
ASE_00009	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	26106	0	0	0	0	67
ASE_00012	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	73914	6	0	6	0	123
ASE_00014	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	54285	0	0	0	0	106
ASE_00017	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	51038	2	0	2	0	64
ASE_00020	RNaseP_bact_a links to Rfam database...	0.04	0.01	0.25	1	73916	3	0	3	0	125
ASE_00021	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	104189	7	1	6	0	160
ASE_00023	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	84246	9	0	9	0	127
ASE_00028	RNaseP_bact_b links to Rfam database...	0.02	0.01	0.05	1	84646	22	5	14	3	125
ASE_00029	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	83024	4	0	4	0	122
ASE_00030	RNaseP_bact_a links to Rfam database...	0.11	0.03	0.44	4	85482	5	0	5	0	141
ASE_00032	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	80196	5	0	4	1	118
ASE_00033	RNaseP_bact_a links to Rfam database...	0.12	0.03	0.44	4	64971	5	0	5	0	117
ASE_00036	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	75845	10	0	10	0	132
ASE_00037	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	59335	5	0	5	0	110
ASE_00038	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	53623	5	0	5	0	101
ASE_00040	RNaseP_bact_a links to Rfam database...	0.02	0.01	0.07	1	78989	13	0	13	0	132
ASE_00041	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	57624	6	0	6	0	108
ASE_00042	RNaseP_bact_a links to Rfam database...	0.09	0.03	0.29	4	90086	10	0	10	0	141
ASE_00044	RNaseP_bact_a links to Rfam database...	0.03	0.01	0.10	1	54605	9	0	9	0	104
ASE_00045	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	47271	9	0	7	2	80
ASE_00046	RNaseP_bact_a links to Rfam database...	0.11	0.03	0.43	3	50396	4	0	4	0	100
ASE_00047	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	74303	2	0	2	0	130
ASE_00053	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	79398	3	0	3	0	133
ASE_00064	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	45448	3	0	3	0	89
ASE_00066	RNaseP_bact_a links to Rfam database...	0.16	0.03	0.80	4	72385	1	0	1	0	126
ASE_00068	RNaseP_bact_a links to Rfam database...	0.05	0.01	0.25	1	37671	3	0	3	0	84
ASE_00074	RNaseP_bact_a links to Rfam database...	0.21	0.07	0.67	8	67884	4	0	4	0	111
ASE_00075	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	108804	8	0	7	1	162
ASE_00076	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	68256	9	0	9	0	118
ASE_00077	RNaseP_bact_a links to Rfam database...	0.09	0.02	0.33	2	45144	4	1	3	0	84
ASE_00078	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	43071	0	0	0	0	83
ASE_00079	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	55606	5	0	5	0	100
ASE_00080	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	71623	9	2	6	1	123
ASE_00081	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	49768	2	0	2	0	97
ASE_00082	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	70494	6	0	6	0	116
ASE_00083	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	62477	5	0	4	1	110
ASE_00084	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	53625	4	0	3	1	99
ASE_00087	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	88406	4	0	4	0	144
ASE_00090	RNaseP_bact_a links to Rfam database...	0.04	0.01	0.17	1	55605	5	0	5	0	100
ASE_00092	RNaseP_bact_a links to Rfam database...	0.04	0.01	0.20	1	63541	4	0	4	0	112
ASE_00096	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	63542	4	0	4	0	115
ASE_00104	RNaseP_bact_a links to Rfam database...	0.10	0.03	0.31	4	64248	9	0	9	0	115
ASE_00111	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	50084	2	2	0	0	57
ASE_00112	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	75461	5	1	4	0	116
ASE_00114	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	45440	14	0	11	3	77
ASE_00115	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	54615	0	0	0	0	101
ASE_00116	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	31626	0	0	0	0	66
ASE_00118	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	60722	6	0	4	2	102
ASE_00119	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	62834	3	0	1	2	108
ASE_00120	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	46970	1	0	1	0	94
ASE_00121	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	45150	0	0	0	0	92
ASE_00122	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	43360	6	0	5	1	88
ASE_00123	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	38499	4	0	4	0	85
ASE_00125	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	39337	3	0	3	0	88
ASE_00126	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	40468	2	0	2	0	82
ASE_00128	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	53297	4	1	3	0	100
ASE_00129	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	62821	18	1	13	4	111
ASE_00131	RNaseP_bact_a links to Rfam database...	0.30	0.15	0.59	13	39318	15	0	9	6	72
ASE_00132	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	50401	3	0	2	1	95
ASE_00134	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	50397	6	0	6	0	95
ASE_00135	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	63187	3	0	3	0	109
ASE_00136	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	48202	4	0	3	1	92
ASE_00137	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	48512	4	0	4	0	98
ASE_00138	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	40467	3	0	3	0	81
ASE_00139	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	54280	5	0	5	0	104
ASE_00140	RNaseP_bact_a links to Rfam database...	0.04	0.01	0.20	1	70871	4	1	3	0	124
ASE_00145	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	70125	0	0	0	0	111
ASE_00146	RNaseP_bact_a links to Rfam database...	0.09	0.02	0.38	3	70868	5	0	5	0	121
ASE_00148	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	112574	1	1	0	0	154
ASE_00151	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	52000	4	1	2	1	98
ASE_00153	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	57629	1	1	0	0	73
ASE_00154	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	65341	0	0	0	0	107
ASE_00155	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	93528	0	0	0	0	142
ASE_00161	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	53619	12	2	7	3	87
ASE_00163	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	53297	4	1	3	0	93
ASE_00165	RNaseP_bact_a links to Rfam database...	0.11	0.02	0.67	2	52972	1	0	1	0	99
ASE_00168	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	60725	1	1	0	0	64
ASE_00169	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	57287	4	0	4	0	107
ASE_00170	RNaseP_bact_a links to Rfam database...	0.04	0.01	0.17	1	48822	5	0	5	0	92
ASE_00171	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	48513	4	0	3	1	94
ASE_00172	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	58988	8	0	8	0	106
ASE_00174	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	61075	0	0	0	0	109
ASE_00175	RNaseP_bact_a links to Rfam database...	0.05	0.02	0.14	2	60017	14	0	12	2	105
ASE_00176	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	60020	11	3	8	0	110
ASE_00179	RNaseP_bact_a links to Rfam database...	0.09	0.04	0.23	3	44240	12	1	9	2	81
ASE_00180	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	51355	5	3	2	0	100
ASE_00181	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	57627	3	0	3	0	106
ASE_00182	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	84254	1	0	1	0	136
ASE_00185	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	73531	5	0	5	0	128
ASE_00186	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	78994	9	1	8	0	132
ASE_00187	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	68630	5	3	2	0	115
ASE_00190	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	45437	15	3	11	1	90
ASE_00191	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	29646	0	0	0	0	61
ASE_00192	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	84653	14	3	10	1	133
ASE_00196	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	31626	0	0	0	0	75
ASE_00197	RNaseP_bact_a links to Rfam database...	0.03	0.01	0.13	1	89245	7	0	7	0	144
ASE_00198	RNaseP_bact_a links to Rfam database...	0.15	0.04	0.57	4	52643	3	0	3	0	98
ASE_00203	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46663	2	0	2	0	96
ASE_00209	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	43071	0	0	0	0	88
ASE_00210	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	27261	0	0	0	0	65
ASE_00212	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	93956	5	0	5	0	148
ASE_00213	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	27261	0	0	0	0	66
ASE_00214	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	56271	9	0	9	0	103
ASE_00215	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	48513	3	0	3	0	99
ASE_00216	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	39338	2	0	2	0	82
ASE_00217	RNaseP_bact_a links to Rfam database...	0.16	0.04	0.57	4	40463	3	0	3	0	86
ASE_00221	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	64617	3	0	3	0	117
ASE_00222	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	112101	0	0	0	0	157
ASE_00227	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	78993	10	3	7	0	133
ASE_00228	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46967	4	0	4	0	86
ASE_00229	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	42482	4	1	3	0	87
ASE_00231	RNaseP_bact_a links to Rfam database...	0.07	0.02	0.22	2	47886	8	2	5	1	94
ASE_00232	RNaseP_bact_a links to Rfam database...	0.09	0.02	0.33	2	38497	4	0	4	0	82
ASE_00234	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	75463	3	1	2	0	129
ASE_00237	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	45751	2	0	2	0	56
ASE_00238	RNaseP_bact_a links to Rfam database...	0.07	0.01	0.50	1	64259	1	0	1	0	113
ASE_00240	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46660	5	0	5	0	93
ASE_00241	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	43954	2	0	2	0	87
ASE_00245	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	55278	2	0	0	2	78
ASE_00246	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	48202	3	0	3	0	67
ASE_00247	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	54284	1	1	0	0	64
ASE_00252	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	115437	4	0	3	1	168
ASE_00254	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	36850	6	1	5	0	82
ASE_00255	RNaseP_bact_a links to Rfam database...	0.12	0.03	0.50	4	74683	4	0	4	0	126
ASE_00257	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	51035	5	0	5	0	97
ASE_00258	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	26796	0	0	0	0	54
ASE_00263	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	70490	10	0	10	0	120
ASE_00264	RNaseP_nuc links to Rfam database...	0.12	0.02	0.67	2	49138	3	0	1	2	98
ASE_00267	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	45145	6	0	5	1	88
ASE_00270	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	72388	3	0	2	1	128
ASE_00274	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	55608	3	0	3	0	103
ASE_00277	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	48203	2	0	2	0	91
ASE_00279	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	53299	2	0	2	0	101
ASE_00280	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	52001	2	0	2	0	98
ASE_00282	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	77811	4	0	4	0	127
ASE_00283	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	61769	7	0	7	0	107
ASE_00284	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	58309	2	1	1	0	108
ASE_00285	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	69000	6	0	6	0	122
ASE_00286	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46659	6	0	6	0	92
ASE_00287	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	54939	7	0	7	0	103
ASE_00288	RNaseP_bact_a links to Rfam database...	0.10	0.02	0.50	2	46052	2	0	2	0	91
ASE_00289	RNaseP_bact_a links to Rfam database...	0.05	0.01	0.18	2	101014	10	1	8	1	155
ASE_00292	RNaseP_bact_a links to Rfam database...	0.15	0.04	0.50	6	81798	6	0	6	0	132
ASE_00294	RNaseP_bact_a links to Rfam database...	0.08	0.02	0.31	4	114468	9	0	9	0	167
ASE_00295	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	73909	11	0	11	0	131
ASE_00296	RNaseP_bact_a links to Rfam database...	0.09	0.03	0.29	4	91792	10	1	9	0	141
ASE_00297	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	52972	3	0	3	0	98
ASE_00298	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	67525	3	1	2	0	113
ASE_00299	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	49451	5	0	4	1	100
ASE_00303	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	67895	1	0	1	0	95
ASE_00305	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	54596	22	4	15	3	85
ASE_00313	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	62479	4	0	2	2	89
ASE_00321	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	54597	21	1	17	3	88
ASE_00328	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	72760	15	0	11	4	112
ASE_00330	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	56277	3	0	3	0	90
ASE_00332	RNaseP_bact_a links to Rfam database...	0.15	0.04	0.50	6	81798	6	0	6	0	132
ASE_00337	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	39340	2	0	0	2	71
ASE_00338	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	66427	3	0	3	0	98
ASE_00340	RNaseP_bact_a links to Rfam database...	0.04	0.01	0.14	1	46049	6	0	6	0	84
ASE_00342	RNaseP_bact_a links to Rfam database...	0.09	0.03	0.30	3	62471	7	0	7	0	112
ASE_00343	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	83429	8	1	6	1	113
ASE_00346	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	48205	0	0	0	0	97
ASE_00359	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	42778	0	0	0	0	80
ASE_00361	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	75463	3	0	3	0	127
ASE_00362	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	48200	5	0	5	0	91
ASE_00363	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	51354	6	0	6	0	94
ASE_00364	RNaseP_bact_a links to Rfam database...	0.11	0.02	0.67	2	54282	1	0	1	0	103
ASE_00366	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	58652	1	0	1	0	98
ASE_00367	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	43067	5	0	4	1	86
ASE_00369	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	55939	6	1	5	0	107
ASE_00370	RNaseP_bact_a links to Rfam database...	0.10	0.02	0.40	2	41900	3	0	3	0	82
ASE_00372	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	51997	6	0	6	0	100
ASE_00374	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	44843	7	0	7	0	88
ASE_00375	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	60373	5	0	5	0	110
ASE_00376	RNaseP_bact_a links to Rfam database...	0.04	0.01	0.17	1	56947	5	0	5	0	104
ASE_00379	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46050	7	0	6	1	89
ASE_00380	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	54942	4	2	2	0	99
ASE_00382	RNaseP_bact_a links to Rfam database...	0.06	0.01	0.33	1	41902	3	0	2	1	83
ASE_00383	RNaseP_bact_a links to Rfam database...	0.06	0.01	0.33	1	54612	2	0	2	0	104
ASE_00384	RNaseP_bact_a links to Rfam database...	0.05	0.01	0.20	1	48511	4	0	4	0	91
ASE_00385	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	41902	3	0	3	0	81
ASE_00386	RNaseP_bact_a links to Rfam database...	0.10	0.03	0.33	3	50394	7	0	6	1	93
ASE_00387	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	55940	5	0	5	0	104
ASE_00388	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	45749	5	0	4	1	89
ASE_00390	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	42192	4	0	3	1	85
ASE_00393	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	47891	4	0	4	0	93
ASE_00394	RNaseP_bact_a links to Rfam database...	0.03	0.01	0.07	1	46956	15	0	14	1	92
ASE_00395	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	41612	6	0	4	2	84
ASE_00396	RNaseP_bact_a links to Rfam database...	0.15	0.04	0.60	3	41611	2	0	2	0	80
ASE_00397	RNaseP_bact_a links to Rfam database...	0.04	0.01	0.17	1	54609	5	1	4	0	104
ASE_00398	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	55934	11	0	11	0	104
ASE_00400	RNaseP_bact_a links to Rfam database...	0.08	0.02	0.33	2	57964	4	3	1	0	104
ASE_00401	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	77015	13	0	13	0	126
ASE_00402	RNaseP_bact_a links to Rfam database...	0.05	0.01	0.25	1	42482	3	0	3	0	84
ASE_00403	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	55941	4	0	4	0	107
ASE_00404	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	43065	9	0	6	3	85
ASE_00411	RNaseP_bact_a links to Rfam database...	0.11	0.02	0.50	2	49451	2	0	2	0	87
ASE_00413	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	44546	5	0	5	0	81
ASE_00415	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	54941	5	1	4	0	103
ASE_00416	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	77412	9	0	9	0	127
ASE_00417	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	54615	0	0	0	0	100
ASE_00418	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	38781	0	0	0	0	75
ASE_00419	RNaseP_bact_a links to Rfam database...	0.10	0.03	0.33	3	54937	6	0	6	0	100
ASE_00420	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	43365	0	0	0	0	63
ASE_00422	RNaseP_bact_a links to Rfam database...	0.05	0.02	0.12	2	46954	19	1	14	4	92
ASE_00426	RNaseP_bact_a links to Rfam database...	0.11	0.04	0.31	4	61062	9	0	9	0	104
ASE_00427	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	40755	0	0	0	0	46
ASE_00428	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	76629	8	0	7	1	125
ASE_00430	RNaseP_bact_a links to Rfam database...	0.07	0.02	0.25	2	46963	6	0	6	0	95
ASE_00431	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46358	2	0	2	0	95
ASE_00434	RNaseP_bact_b links to Rfam database...	0.04	0.02	0.11	2	68246	20	1	16	3	108
ASE_00437	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	79395	7	0	6	1	135
ASE_00438	RNaseP_bact_a links to Rfam database...	0.02	0.01	0.07	1	66052	13	2	11	0	115
ASE_00441	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	64258	3	0	3	0	112
ASE_00447	RNaseP_bact_a links to Rfam database...	0.15	0.03	0.67	4	60372	2	0	2	0	112
ASE_00448	RNaseP_bact_a links to Rfam database...	0.04	0.01	0.14	1	64254	6	1	5	0	111
ASE_00451	RNaseP_bact_a links to Rfam database...	0.11	0.03	0.36	4	70865	7	0	7	0	121
ASE_00454	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	43365	0	0	0	0	63
CRW_00013	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	103737	3	0	3	0	115
CRW_00016	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	77418	3	0	3	0	120
CRW_00024	SSU_rRNA_archaea links to Rfam database...	0.78	0.76	0.80	346	1085169	116	15	71	30	112
CRW_00048	SSU_rRNA_bacteria links to Rfam database...	0.65	0.57	0.74	268	1170853	120	15	79	26	202
CRW_00054	SSU_rRNA_bacteria links to Rfam database...	0.66	0.59	0.75	269	1107457	114	15	75	24	187
CRW_00059	SSU_rRNA_bacteria links to Rfam database...	0.63	0.54	0.73	257	1172394	120	18	77	25	216
CRW_00061	SSU_rRNA_bacteria links to Rfam database...	0.62	0.54	0.72	258	1181594	124	19	82	23	218
CRW_00068	SSU_rRNA_bacteria links to Rfam database...	0.65	0.57	0.75	261	1108955	113	16	73	24	196
CRW_00096	SSU_rRNA_bacteria links to Rfam database...	0.66	0.57	0.75	267	1178524	119	14	75	30	198
CRW_00140	SSU_rRNA_bacteria links to Rfam database...	0.67	0.59	0.76	273	1135921	112	13	71	28	190
CRW_00141	SSU_rRNA_bacteria links to Rfam database...	0.63	0.55	0.72	260	1201662	126	16	87	23	216
CRW_00150	SSU_rRNA_bacteria links to Rfam database...	0.66	0.58	0.74	270	1152558	117	19	74	24	196
CRW_00152	SSU_rRNA_bacteria links to Rfam database...	0.63	0.54	0.74	252	1180075	110	15	74	21	219
CRW_00166	SSU_rRNA_bacteria links to Rfam database...	0.64	0.55	0.74	258	1190849	118	11	78	29	210
CRW_00173	SSU_rRNA_bacteria links to Rfam database...	0.62	0.55	0.71	243	1082316	119	17	80	22	202
CRW_00177	SSU_rRNA_bacteria links to Rfam database...	0.67	0.58	0.77	274	1178524	103	15	67	21	199
CRW_00196	SSU_rRNA_bacteria links to Rfam database...	0.63	0.54	0.73	257	1207883	117	16	79	22	218
CRW_00230	SSU_rRNA_bacteria links to Rfam database...	0.62	0.54	0.71	257	1198565	127	16	88	23	221
CRW_00245	SSU_rRNA_bacteria links to Rfam database...	0.63	0.55	0.72	248	1105984	121	17	79	25	205
CRW_00248	SSU_rRNA_bacteria links to Rfam database...	0.65	0.57	0.75	278	1218768	123	17	78	28	206
CRW_00250	SSU_rRNA_bacteria links to Rfam database...	0.67	0.60	0.74	285	1198543	124	18	80	26	193
CRW_00256	SSU_rRNA_bacteria links to Rfam database...	0.62	0.54	0.72	251	1192392	119	17	80	22	217
CRW_00270	SSU_rRNA_bacteria links to Rfam database...	0.64	0.56	0.74	255	1111941	113	15	75	23	200
CRW_00271	SSU_rRNA_bacteria links to Rfam database...	0.62	0.53	0.73	243	1122417	115	15	76	24	219
CRW_00273	SSU_rRNA_bacteria links to Rfam database...	0.64	0.56	0.73	250	1085260	113	15	76	22	196
CRW_00275	SSU_rRNA_bacteria links to Rfam database...	0.63	0.54	0.72	249	1114926	120	15	81	24	208
CRW_00277	SSU_rRNA_bacteria links to Rfam database...	0.61	0.52	0.72	235	1110468	113	17	75	21	218
CRW_00280	SSU_rRNA_bacteria links to Rfam database...	0.61	0.53	0.70	240	1117918	122	15	87	20	213
CRW_00281	SSU_rRNA_bacteria links to Rfam database...	0.65	0.56	0.74	260	1144991	117	12	78	27	204
CRW_00283	SSU_rRNA_bacteria links to Rfam database...	0.53	0.42	0.68	180	1015761	96	14	70	12	252
CRW_00289	SSU_rRNA_bacteria links to Rfam database...	0.60	0.50	0.70	240	1189312	122	16	85	21	236
CRW_00292	SSU_rRNA_bacteria links to Rfam database...	0.55	0.43	0.72	196	1123976	99	12	66	21	265
CRW_00366	SSU_rRNA_eukarya links to Rfam database...	0.00	0.00	0.00	0	1579464	301	50	239	12	482
CRW_00371	SSU_rRNA_eukarya links to Rfam database...	0.00	0.00	0.00	0	1611598	319	50	262	7	496
CRW_00379	SSU_rRNA_eukarya links to Rfam database...	0.00	0.00	0.00	0	2126581	414	77	295	42	534
CRW_00411	SSU_rRNA_eukarya links to Rfam database...	0.00	0.00	0.00	0	1615206	309	45	252	12	496
CRW_00414	SSU_rRNA_eukarya links to Rfam database...	0.00	0.00	0.00	0	1665933	312	53	239	20	495
CRW_00466	SSU_rRNA_bacteria links to Rfam database...	0.64	0.55	0.74	252	1116423	114	13	77	24	206
CRW_00589	SSU_rRNA_bacteria links to Rfam database...	0.63	0.53	0.74	236	1094141	110	9	74	27	209
CRW_00590	SSU_rRNA_bacteria links to Rfam database...	0.64	0.54	0.76	245	1119432	103	8	71	24	207
CRW_00591	SSU_rRNA_bacteria links to Rfam database...	0.66	0.58	0.76	258	1098562	118	11	72	35	188
CRW_00610	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	36310	5	0	5	0	81
CRW_00613	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	34979	1	0	1	0	78
CRW_00614	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	121764	17	0	7	10	57
CRW_00619	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	165014	28	5	6	17	73
CRW_00620	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	150964	27	4	7	16	63
CRW_00621	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	153172	32	5	4	23	71
CRW_00623	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	129777	25	6	12	7	83
CRW_00633	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	63541	5	0	5	0	106
CRW_00670	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	70124	4	0	1	3	120
CRW_00671	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	62835	0	0	0	0	117
CRW_00672	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	72386	7	0	4	3	111
CRW_00674	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	83436	1	0	0	1	124
CRW_00676	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	93527	2	0	1	1	115
CRW_00692	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	68635	3	0	0	3	90
CRW_00759	SSU_rRNA_eukarya links to Rfam database...	0.00	0.00	0.00	1	1636859	310	50	235	25	480
CRW_00763	SSU_rRNA_bacteria links to Rfam database...	0.62	0.49	0.79	217	1215744	86	5	54	27	229
CRW_00778	SSU_rRNA_bacteria links to Rfam database...	0.59	0.48	0.73	185	1201773	99	7	60	32	199
CRW_00789	SSU_rRNA_bacteria links to Rfam database...	0.64	0.56	0.74	249	1137451	114	13	73	28	198
CRW_00795	SSU_rRNA_bacteria links to Rfam database...	0.58	0.47	0.72	184	1152666	117	7	64	46	210
CRW_00849	SSU_rRNA_bacteria links to Rfam database...	0.60	0.49	0.73	232	1117943	100	11	74	15	238
CRW_01153	SSU_rRNA_eukarya links to Rfam database...	0.00	0.00	0.00	0	1606225	319	65	238	16	503
CRW_01171	SSU_rRNA_eukarya links to Rfam database...	0.00	0.00	0.00	0	1593701	318	50	254	14	506
CRW_01343	SSU_rRNA_archaea links to Rfam database...	0.52	0.41	0.68	177	977639	95	12	73	10	257
PDB_00012	mir-TAR links to Rfam database...	1.00	1.00	1.00	7	399	1	0	0	1	0
PDB_00213	Gammaretro_CES links to Rfam database...	0.56	0.49	0.65	20	5019	11	0	11	0	21
PDB_00553	mir-TAR links to Rfam database...	0.90	0.82	1.00	9	456	0	0	0	0	2
PDB_00703	SSU_rRNA_bacteria links to Rfam database...	0.63	0.53	0.76	261	1073500	115	11	73	31	234
PDB_00716	HDV_ribozyme links to Rfam database...	0.59	0.48	0.73	11	2686	4	0	4	0	12
PDB_00741	Entero_5_CRE links to Rfam database...	0.00	0.00	0.00	0	703	0	0	0	0	17
PDB_00810	s2m links to Rfam database...	0.80	0.65	1.00	11	1070	0	0	0	0	6
PDB_00827	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	27026	2	0	2	0	81
PDB_00828	Purine links to Rfam database...	0.54	0.41	0.73	11	2470	4	2	2	0	16
PDB_00829	Purine links to Rfam database...	0.74	0.63	0.88	15	2261	2	2	0	0	9
PDB_00854	SSU_rRNA_bacteria links to Rfam database...	0.60	0.48	0.76	259	1500435	126	9	75	42	276
PDB_00876	HIV_FE links to Rfam database...	0.57	0.50	0.67	10	975	5	0	5	0	10
PDB_00919	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	44249	5	0	4	1	103
PDB_01050	UnaL2 links to Rfam database...	0.62	0.46	0.86	6	623	2	0	1	1	7
PDB_01051	Telomerase-cil links to Rfam database...	-0.01	0.00	0.00	0	899	4	2	2	0	13
PDB_01088	SSU_rRNA_bacteria links to Rfam database...	0.60	0.47	0.76	259	1471129	122	8	74	40	288
PDB_01092	glmS links to Rfam database...	0.48	0.37	0.63	19	10123	13	1	10	2	33
PDB_01103	SSU_rRNA_bacteria links to Rfam database...	0.60	0.47	0.76	266	1606178	119	12	72	35	296
PDB_01105	SSU_rRNA_bacteria links to Rfam database...	0.61	0.50	0.76	268	1433617	119	7	79	33	272
PDB_01120	SSU_rRNA_bacteria links to Rfam database...	0.64	0.53	0.78	280	1204768	120	9	71	40	247
PDB_01152	HIV_FS2 links to Rfam database...	0.88	0.79	1.00	11	550	0	0	0	0	3
PDB_01273	SSU_rRNA_bacteria links to Rfam database...	0.65	0.55	0.76	272	1117903	116	13	72	31	219
RFA_00389	Hammerhead_3 links to Rfam database...	0.63	0.40	1.00	6	1425	1	0	0	1	9
RFA_00390	Hammerhead_3 links to Rfam database...	0.63	0.40	1.00	6	1425	1	0	0	1	9
RFA_00391	Hammerhead_3 links to Rfam database...	0.63	0.40	1.00	6	1425	1	0	0	1	9
RFA_00396	Hammerhead_3 links to Rfam database...	0.63	0.40	1.00	6	1425	1	0	0	1	9
RFA_00402	Hammerhead_3 links to Rfam database...	0.63	0.40	1.00	6	1425	0	0	0	0	9
RFA_00409	Hammerhead_3 links to Rfam database...	0.58	0.33	1.00	5	1426	1	0	0	1	10
RFA_00416	Hammerhead_3 links to Rfam database...	0.63	0.40	1.00	6	1479	1	0	0	1	9
RFA_00425	Hammerhead_3 links to Rfam database...	0.63	0.40	1.00	6	1647	0	0	0	0	9
RFA_00427	Hammerhead_3 links to Rfam database...	0.00	0.00	0.00	0	1482	3	0	3	0	15
RFA_00433	Hammerhead_3 links to Rfam database...	0.63	0.40	1.00	6	1425	1	0	0	1	9
RFA_00434	Hammerhead_3 links to Rfam database...	0.63	0.40	1.00	6	1425	1	0	0	1	9
RFA_00436	Hammerhead_3 links to Rfam database...	0.63	0.40	1.00	6	1425	1	0	0	1	9
RFA_00440	Hammerhead_3 links to Rfam database...	0.63	0.40	1.00	6	1479	1	0	0	1	9
RFA_00442	Hammerhead_3 links to Rfam database...	0.63	0.40	1.00	6	1425	1	0	0	1	9
RFA_00444	Hammerhead_3 links to Rfam database...	0.00	0.00	0.00	0	1538	2	0	2	0	15
RFA_00446	Hammerhead_3 links to Rfam database...	-0.01	0.00	0.00	0	1481	4	0	4	0	15
RFA_00449	Hammerhead_3 links to Rfam database...	-0.01	0.00	0.00	0	1481	4	0	4	0	15
RFA_00582	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	5980	4	0	0	4	0
RFA_00583	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4935	7	0	0	7	0
RFA_00585	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4836	6	0	0	6	0
RFA_00587	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4836	4	0	0	4	0
RFA_00588	Y_RNA links to Rfam database...	0.97	0.93	1.00	14	4546	4	0	0	4	1
RFA_00589	Y_RNA links to Rfam database...	0.93	0.87	1.00	13	4358	3	0	0	3	2
RFA_00594	Y_RNA links to Rfam database...	0.93	0.87	1.00	13	2762	2	0	0	2	2
RFA_00596	Y_RNA links to Rfam database...	0.82	0.67	1.00	10	5985	5	0	0	5	5
RFA_00597	Telomerase-vert links to Rfam database...	0.00	0.00	0.00	0	97889	17	4	10	3	109
RFA_00599	Telomerase-vert links to Rfam database...	0.43	0.25	0.74	28	101437	25	0	10	15	83
RFA_00601	Telomerase-vert links to Rfam database...	0.57	0.38	0.86	43	99185	16	1	6	9	71
RFA_00602	Telomerase-vert links to Rfam database...	0.09	0.02	0.50	2	101471	3	1	1	1	114
RFA_00603	Telomerase-cil links to Rfam database...	0.00	0.00	0.00	0	13520	11	2	8	1	35
RFA_00604	Telomerase-cil links to Rfam database...	0.00	0.00	0.00	0	13529	1	0	1	0	35
RFA_00606	Telomerase-cil links to Rfam database...	0.00	0.00	0.00	0	21309	12	3	9	0	39
RFA_00607	Telomerase-cil links to Rfam database...	0.00	0.00	0.00	0	17752	15	0	14	1	36
RFA_00609	Telomerase-cil links to Rfam database...	0.00	0.00	0.00	0	17949	9	1	5	3	37
RFA_00610	Telomerase-cil links to Rfam database...	0.00	0.00	0.00	0	17195	10	3	7	0	37
RFA_00611	Telomerase-cil links to Rfam database...	0.00	0.00	0.00	0	13032	10	0	9	1	35
RFA_00613	Telomerase-cil links to Rfam database...	0.00	0.00	0.00	0	12879	1	0	1	0	35
RFA_00615	Telomerase-cil links to Rfam database...	0.00	0.00	0.00	0	13360	6	0	6	0	35
RFA_00620	Telomerase-cil links to Rfam database...	0.00	0.00	0.00	0	21941	4	0	4	0	39
RFA_00621	RNase_MRP links to Rfam database...	0.00	0.00	0.00	0	46359	1	0	1	0	76
RFA_00623	RNase_MRP links to Rfam database...	0.00	0.00	0.00	0	43955	1	0	1	0	78
RFA_00624	RNase_MRP links to Rfam database...	0.00	0.00	0.00	0	30135	0	0	0	0	61
RFA_00626	rne5 links to Rfam database...	0.90	0.80	1.00	70	56546	12	0	0	12	17
RFA_00627	rne5 links to Rfam database...	0.90	0.82	0.99	71	56881	11	0	1	10	16
RFA_00628	rne5 links to Rfam database...	0.89	0.81	0.97	70	57219	12	0	2	10	16
RFA_00630	rne5 links to Rfam database...	0.85	0.75	0.97	65	56886	11	0	2	9	22
RFA_00632	HDV_ribozyme links to Rfam database...	0.47	0.39	0.58	11	4076	8	3	5	0	17
RFA_00636	HDV_ribozyme links to Rfam database...	0.62	0.54	0.71	15	3984	6	3	3	0	13
RFA_00639	7SK links to Rfam database...	0.59	0.48	0.72	42	54557	30	3	13	14	45
RFA_00644	Vimentin3 links to Rfam database...	0.36	0.33	0.40	6	2686	9	1	8	0	12
RFA_00645	Vimentin3 links to Rfam database...	0.31	0.28	0.36	5	2401	9	1	8	0	13
RFA_00649	Vimentin3 links to Rfam database...	0.37	0.33	0.43	6	2131	8	0	8	0	12
RFA_00653	Vimentin3 links to Rfam database...	0.36	0.33	0.40	6	2130	9	1	8	0	12
RFA_00654	Vimentin3 links to Rfam database...	0.35	0.28	0.45	5	2404	6	0	6	0	13
RFA_00658	Hammerhead_1 links to Rfam database...	0.64	0.57	0.73	8	1117	4	0	3	1	6
RFA_00659	Hammerhead_1 links to Rfam database...	0.35	0.29	0.44	4	1119	6	0	5	1	10
RFA_00664	Hammerhead_1 links to Rfam database...	0.59	0.50	0.70	7	980	4	0	3	1	7
RFA_00667	Hammerhead_1 links to Rfam database...	0.64	0.57	0.73	8	979	4	0	3	1	6
RFA_00668	Hammerhead_1 links to Rfam database...	0.71	0.57	0.89	8	981	1	0	1	0	6
RFA_00672	Hammerhead_1 links to Rfam database...	0.61	0.54	0.70	7	893	3	0	3	0	6
RFA_00673	Hammerhead_1 links to Rfam database...	0.42	0.36	0.50	5	1118	6	0	5	1	9
RFA_00674	Hammerhead_1 links to Rfam database...	0.69	0.64	0.75	9	1116	4	0	3	1	5
RFA_00675	Hammerhead_1 links to Rfam database...	0.62	0.50	0.78	7	981	3	0	2	1	7
RFA_00677	Hammerhead_1 links to Rfam database...	0.72	0.64	0.82	9	979	2	0	2	0	5
RFA_00678	Hammerhead_1 links to Rfam database...	0.43	0.29	0.67	4	940	3	0	2	1	10
RFA_00680	Hammerhead_1 links to Rfam database...	0.69	0.64	0.75	9	1116	4	0	3	1	5
RFA_00684	Hammerhead_1 links to Rfam database...	0.80	0.64	1.00	9	981	1	0	0	1	5
RFA_00685	Hammerhead_1 links to Rfam database...	0.64	0.57	0.73	8	979	4	0	3	1	6
RFA_00695	Hammerhead_1 links to Rfam database...	0.31	0.14	0.67	2	7018	2	0	1	1	12
RFA_00703	Hammerhead_1 links to Rfam database...	0.54	0.36	0.83	5	4272	1	0	1	0	9
RFA_00704	Hammerhead_1 links to Rfam database...	0.35	0.29	0.44	4	981	6	0	5	1	10
RFA_00705	Hammerhead_1 links to Rfam database...	0.80	0.64	1.00	9	1026	1	0	0	1	5
RFA_00706	Hammerhead_1 links to Rfam database...	0.56	0.43	0.75	6	1027	3	0	2	1	8
RFA_00707	Hammerhead_1 links to Rfam database...	0.67	0.57	0.80	8	1025	3	0	2	1	6
RFA_00708	Hammerhead_1 links to Rfam database...	0.75	0.57	1.00	8	1027	1	0	0	1	6
RFA_00709	Hammerhead_1 links to Rfam database...	0.53	0.43	0.67	6	981	3	0	3	0	8
RFA_00710	Hammerhead_1 links to Rfam database...	0.43	0.29	0.67	4	984	2	0	2	0	10
RFA_00711	Hammerhead_1 links to Rfam database...	0.35	0.21	0.60	3	1030	3	0	2	1	11
RFA_00716	Hammerhead_1 links to Rfam database...	0.56	0.43	0.75	6	938	3	0	2	1	8
RFA_00717	Hammerhead_1 links to Rfam database...	0.50	0.36	0.71	5	896	2	0	2	0	9
RFA_00730	s2m links to Rfam database...	0.91	0.83	1.00	10	893	1	0	0	1	2
RFA_00731	s2m links to Rfam database...	0.91	0.83	1.00	10	893	1	0	0	1	2
RFA_00733	s2m links to Rfam database...	0.91	0.83	1.00	10	893	1	0	0	1	2
RFA_00734	s2m links to Rfam database...	0.91	0.83	1.00	10	893	0	0	0	0	2
RFA_00736	s2m links to Rfam database...	0.91	0.83	1.00	10	893	1	0	0	1	2
RFA_00737	s2m links to Rfam database...	0.91	0.83	1.00	10	893	1	0	0	1	2
RFA_00745	s2m links to Rfam database...	0.91	0.83	1.00	10	936	1	0	0	1	2
RFA_00749	s2m links to Rfam database...	0.91	0.83	1.00	10	893	1	0	0	1	2
RFA_00758	s2m links to Rfam database...	0.86	0.75	1.00	9	894	0	0	0	0	3
RFA_00762	s2m links to Rfam database...	0.91	0.83	1.00	10	893	0	0	0	0	2
RFA_00763	s2m links to Rfam database...	0.91	0.83	1.00	10	893	1	0	0	1	2
RFA_00764	s2m links to Rfam database...	0.91	0.83	1.00	10	893	1	0	0	1	2
RFA_00765	s2m links to Rfam database...	0.91	0.83	1.00	10	893	1	0	0	1	2
RFA_00767	Corona_pk3 links to Rfam database...	0.19	0.17	0.23	3	1878	10	3	7	0	15
RFA_00768	Corona_pk3 links to Rfam database...	0.19	0.17	0.23	3	1878	10	3	7	0	15
RFA_00769	Corona_pk3 links to Rfam database...	0.59	0.56	0.63	10	1937	6	4	2	0	8
RFA_00770	Corona_pk3 links to Rfam database...	0.54	0.56	0.53	10	1997	9	6	3	0	8
RFA_00773	Corona_pk3 links to Rfam database...	0.50	0.50	0.50	9	1935	9	6	3	0	9
RFA_00781	Gammaretro_CES links to Rfam database...	0.61	0.59	0.63	19	5020	12	2	9	1	13
RFA_00786	Gammaretro_CES links to Rfam database...	0.61	0.59	0.63	19	5020	12	2	9	1	13
RFA_00791	Gammaretro_CES links to Rfam database...	0.58	0.53	0.63	17	5124	11	2	8	1	15
RFA_00792	Gammaretro_CES links to Rfam database...	0.64	0.63	0.67	20	5020	11	2	8	1	12
RFA_00801	Gammaretro_CES links to Rfam database...	0.59	0.56	0.62	18	5021	12	2	9	1	14
RFA_00808	RydC links to Rfam database...	0.60	0.50	0.73	8	2005	4	0	3	1	8
RFA_00809	RydC links to Rfam database...	0.37	0.31	0.45	5	2134	7	0	6	1	11
RFA_00814	R2_retro_el links to Rfam database...	0.90	0.85	0.95	35	25163	11	0	2	9	6
RFA_00815	R2_retro_el links to Rfam database...	0.90	0.85	0.95	35	24494	10	0	2	8	6
RFA_00816	R2_retro_el links to Rfam database...	0.90	0.85	0.95	35	23183	8	0	2	6	6
RFA_00818	R2_retro_el links to Rfam database...	0.80	0.71	0.91	29	20269	10	0	3	7	12
RFA_00819	R2_retro_el links to Rfam database...	0.90	0.85	0.95	35	27929	13	0	2	11	6
RFA_00820	bicoid_3 links to Rfam database...	0.90	0.88	0.93	140	151374	29	1	10	18	20
RFA_00830	bicoid_3 links to Rfam database...	0.39	0.27	0.59	41	152558	37	3	26	8	113
SRP_00001	Bacteria_large_SRP links to Rfam database...	0.63	0.50	0.80	20	6761	5	1	4	0	20
SRP_00002	Metazoa_SRP links to Rfam database...	0.51	0.35	0.75	36	45102	13	0	12	1	66
SRP_00006	Metazoa_SRP links to Rfam database...	0.51	0.36	0.72	36	45703	15	0	14	1	65
SRP_00008	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	2921	5	1	4	0	25
SRP_00011	Plant_SRP links to Rfam database...	0.45	0.33	0.63	34	46306	21	1	19	1	70
SRP_00015	Plant_SRP links to Rfam database...	0.11	0.07	0.18	7	46320	34	1	32	1	92
SRP_00016	Archaea_SRP links to Rfam database...	0.58	0.41	0.82	45	47840	11	0	10	1	64
SRP_00018	Fungi_SRP links to Rfam database...	0.00	0.00	0.00	0	38497	6	1	5	0	81
SRP_00019	Fungi_SRP links to Rfam database...	0.00	0.00	0.00	0	36042	4	3	1	0	91
SRP_00024	Bacteria_large_SRP links to Rfam database...	0.53	0.45	0.64	39	37614	23	4	18	1	48
SRP_00026	Bacteria_large_SRP links to Rfam database...	0.60	0.55	0.67	48	36784	25	4	20	1	40
SRP_00027	Bacteria_large_SRP links to Rfam database...	0.59	0.53	0.66	46	37058	24	4	20	0	41
SRP_00030	Bacteria_large_SRP links to Rfam database...	0.64	0.58	0.71	51	36784	21	4	17	0	37
SRP_00031	Bacteria_large_SRP links to Rfam database...	0.63	0.57	0.70	51	36242	22	4	18	0	38
SRP_00037	Bacteria_large_SRP links to Rfam database...	0.66	0.60	0.73	52	36514	19	4	15	0	35
SRP_00038	Bacteria_small_SRP links to Rfam database...	0.35	0.21	0.58	7	5038	5	1	4	0	26
SRP_00040	Bacteria_small_SRP links to Rfam database...	0.24	0.16	0.36	5	5551	9	2	7	0	26
SRP_00042	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	3997	8	0	8	0	25
SRP_00043	Bacteria_small_SRP links to Rfam database...	0.53	0.38	0.73	11	5035	5	0	4	1	18
SRP_00044	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6095	11	1	9	1	32
SRP_00051	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	5448	12	1	11	0	30
SRP_00054	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	5555	10	1	9	0	32
SRP_00060	Metazoa_SRP links to Rfam database...	0.42	0.28	0.64	28	44507	16	0	16	0	72
SRP_00061	Metazoa_SRP links to Rfam database...	0.44	0.31	0.62	31	44800	19	1	18	0	69
SRP_00069	Fungi_SRP links to Rfam database...	0.10	0.04	0.30	3	34443	9	0	7	2	82
SRP_00070	Fungi_SRP links to Rfam database...	0.14	0.05	0.40	6	126741	11	5	4	2	115
SRP_00072	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6320	8	4	4	0	29
SRP_00073	Fungi_SRP links to Rfam database...	0.12	0.04	0.33	3	39051	8	2	4	2	68
SRP_00074	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6548	7	1	6	0	29
SRP_00075	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	5557	9	1	7	1	34
SRP_00077	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6660	10	1	9	0	37
SRP_00079	Plant_SRP links to Rfam database...	0.10	0.06	0.17	5	41875	26	2	23	1	83
SRP_00081	Bacteria_small_SRP links to Rfam database...	0.29	0.19	0.43	6	5551	8	1	7	0	25
SRP_00084	Bacteria_small_SRP links to Rfam database...	0.34	0.21	0.58	7	5448	5	1	4	0	27
SRP_00085	Plant_SRP links to Rfam database...	0.47	0.35	0.65	35	45397	21	2	17	2	66
SRP_00086	Metazoa_SRP links to Rfam database...	0.52	0.40	0.69	40	44195	18	0	18	0	60
SRP_00087	Fungi_SRP links to Rfam database...	0.25	0.10	0.60	6	37391	6	1	3	2	52
SRP_00088	Bacteria_large_SRP links to Rfam database...	0.56	0.47	0.67	42	34128	21	4	17	0	47
SRP_00089	Bacteria_large_SRP links to Rfam database...	0.61	0.50	0.74	45	35717	16	3	13	0	45
SRP_00090	Bacteria_large_SRP links to Rfam database...	0.65	0.58	0.73	52	35440	20	3	16	1	38
SRP_00091	Fungi_SRP links to Rfam database...	0.09	0.02	0.40	2	52970	5	0	3	2	93
SRP_00094	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	4089	6	1	5	0	24
SRP_00095	Bacteria_small_SRP links to Rfam database...	0.57	0.44	0.73	11	3990	4	3	1	0	14
SRP_00098	Bacteria_small_SRP links to Rfam database...	0.04	0.03	0.08	1	6429	11	0	11	0	36
SRP_00099	Plant_SRP links to Rfam database...	0.08	0.04	0.14	4	44821	26	1	24	1	91
SRP_00104	Fungi_SRP links to Rfam database...	0.09	0.04	0.20	3	34438	14	0	12	2	66
SRP_00105	Bacteria_small_SRP links to Rfam database...	0.34	0.21	0.58	7	5553	5	1	4	0	27
SRP_00106	Bacteria_large_SRP links to Rfam database...	0.61	0.60	0.63	15	5229	10	2	7	1	10
SRP_00107	Bacteria_small_SRP links to Rfam database...	0.43	0.32	0.60	6	3645	4	0	4	0	13
SRP_00117	Metazoa_SRP links to Rfam database...	0.57	0.39	0.83	40	45403	9	0	8	1	62
SRP_00124	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	37109	20	2	17	1	85
SRP_00127	Fungi_SRP links to Rfam database...	0.07	0.02	0.29	2	72383	7	0	5	2	117
SRP_00128	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6778	8	2	6	0	36
SRP_00130	Archaea_SRP links to Rfam database...	0.43	0.31	0.60	30	49720	22	2	18	2	67
SRP_00136	Fungi_SRP links to Rfam database...	0.10	0.04	0.25	3	44241	11	1	8	2	68
SRP_00141	Bacteria_small_SRP links to Rfam database...	0.26	0.15	0.46	6	6315	7	0	7	0	35
SRP_00142	Archaea_SRP links to Rfam database...	0.55	0.42	0.74	39	46003	17	0	14	3	54
SRP_00143	Archaea_SRP links to Rfam database...	0.56	0.45	0.70	45	49706	20	0	19	1	56
SRP_00144	Archaea_SRP links to Rfam database...	0.55	0.43	0.70	40	46608	20	1	16	3	54
SRP_00145	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6315	13	0	13	0	40
SRP_00146	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	5246	7	1	6	0	36
SRP_00148	Fungi_SRP links to Rfam database...	0.09	0.02	0.33	2	50080	6	1	3	2	85
SRP_00152	Plant_SRP links to Rfam database...	0.58	0.39	0.87	40	45707	7	0	6	1	63
SRP_00157	Fungi_SRP links to Rfam database...	0.10	0.04	0.25	3	44241	11	2	7	2	69
SRP_00158	Fungi_SRP links to Rfam database...	0.13	0.02	1.00	2	124249	1	0	0	1	113
SRP_00160	Fungi_SRP links to Rfam database...	0.08	0.02	0.25	3	86308	9	3	6	0	127
SRP_00161	Bacteria_small_SRP links to Rfam database...	0.41	0.32	0.54	7	2837	6	0	6	0	15
SRP_00162	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	2921	5	4	1	0	23
SRP_00164	Bacteria_small_SRP links to Rfam database...	0.72	0.60	0.88	21	6879	4	1	2	1	14
SRP_00171	Metazoa_SRP links to Rfam database...	0.53	0.40	0.70	35	45401	15	0	15	0	53
SRP_00173	Bacteria_large_SRP links to Rfam database...	0.53	0.44	0.63	40	38163	25	4	19	2	50
SRP_00174	Bacteria_large_SRP links to Rfam database...	0.44	0.31	0.63	27	38738	16	0	16	0	59
SRP_00175	Fungi_SRP links to Rfam database...	0.12	0.04	0.38	3	44543	7	2	3	2	81
SRP_00178	Plant_SRP links to Rfam database...	0.51	0.36	0.71	37	45701	16	0	15	1	65
SRP_00181	Plant_SRP links to Rfam database...	0.52	0.35	0.77	36	46009	12	0	11	1	66
SRP_00182	Plant_SRP links to Rfam database...	0.57	0.41	0.79	41	46004	12	1	10	1	60
SRP_00184	Plant_SRP links to Rfam database...	0.51	0.36	0.73	36	46007	14	0	13	1	64
SRP_00197	Archaea_SRP links to Rfam database...	0.51	0.37	0.73	37	49404	15	3	11	1	64
SRP_00199	Archaea_SRP links to Rfam database...	0.48	0.37	0.63	39	50978	24	0	23	1	66
SRP_00200	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6888	15	1	14	0	36
SRP_00201	Archaea_SRP links to Rfam database...	0.51	0.39	0.68	43	47832	21	0	20	1	68
SRP_00202	Archaea_SRP links to Rfam database...	0.46	0.36	0.58	42	54213	31	2	28	1	75
SRP_00203	Archaea_SRP links to Rfam database...	0.41	0.31	0.54	33	48767	30	1	27	2	72
SRP_00204	Archaea_SRP links to Rfam database...	0.56	0.42	0.74	43	49083	17	1	14	2	59
SRP_00206	Archaea_SRP links to Rfam database...	0.55	0.41	0.73	44	47835	17	0	16	1	64
SRP_00208	Archaea_SRP links to Rfam database...	0.44	0.32	0.60	32	46612	21	2	19	0	69
SRP_00209	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	4649	7	1	6	0	27
SRP_00216	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	3396	7	1	6	0	27
SRP_00222	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	3074	7	1	6	0	25
SRP_00227	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	5143	8	0	8	0	31
SRP_00230	Fungi_SRP links to Rfam database...	0.08	0.03	0.18	3	39604	16	0	14	2	87
SRP_00231	Bacteria_small_SRP links to Rfam database...	0.46	0.29	0.71	10	5446	4	0	4	0	24
SRP_00233	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	5141	10	1	9	0	33
SRP_00234	Bacteria_large_SRP links to Rfam database...	0.59	0.53	0.66	46	36245	27	5	19	3	40
SRP_00241	Plant_SRP links to Rfam database...	0.00	0.00	0.00	0	46025	31	2	29	0	82
SRP_00243	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	5140	11	1	10	0	31
SRP_00250	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6775	11	2	9	0	36
SRP_00251	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	7011	10	1	9	0	36
SRP_00252	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	49113	28	3	25	0	89
SRP_00253	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	49433	22	4	18	0	90
SRP_00254	Fungi_SRP links to Rfam database...	0.00	0.00	0.00	0	32382	3	3	0	0	61
SRP_00257	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	51009	31	2	29	0	108
SRP_00265	Fungi_SRP links to Rfam database...	0.00	0.00	0.00	0	41319	9	1	8	0	73
SRP_00267	Metazoa_SRP links to Rfam database...	0.17	0.11	0.26	11	44509	32	0	31	1	85
SRP_00271	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	3235	5	0	5	0	24
SRP_00273	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6778	8	1	7	0	40
SRP_00274	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6892	11	1	10	0	38
SRP_00276	Archaea_SRP links to Rfam database...	0.62	0.48	0.79	53	50654	15	1	13	1	57
SRP_00278	Archaea_SRP links to Rfam database...	0.48	0.35	0.65	37	45999	21	1	19	1	68
SRP_00282	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	43345	20	3	17	0	63
SRP_00286	Fungi_SRP links to Rfam database...	0.07	0.02	0.21	4	137007	18	0	15	3	170
SRP_00287	Fungi_SRP links to Rfam database...	0.07	0.02	0.25	3	141766	11	1	8	2	159
SRP_00290	Fungi_SRP links to Rfam database...	0.00	0.00	0.00	0	100557	19	1	18	0	135
SRP_00292	Fungi_SRP links to Rfam database...	0.05	0.02	0.14	3	137529	20	1	17	2	170
SRP_00294	Fungi_SRP links to Rfam database...	0.05	0.02	0.13	3	129263	24	1	19	4	164
SRP_00295	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6894	9	1	8	0	38
SRP_00299	Metazoa_SRP links to Rfam database...	0.48	0.34	0.67	34	44202	17	0	17	0	65
SRP_00301	Fungi_SRP links to Rfam database...	0.10	0.02	0.40	2	32635	5	0	3	2	84
SRP_00302	Fungi_SRP links to Rfam database...	0.10	0.04	0.25	3	41604	11	3	6	2	78
SRP_00303	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6665	5	1	4	0	32
SRP_00308	Bacteria_large_SRP links to Rfam database...	0.62	0.55	0.72	48	36248	19	4	15	0	40
SRP_00310	Bacteria_small_SRP links to Rfam database...	0.60	0.43	0.83	10	2914	3	0	2	1	13
SRP_00312	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	4178	8	0	8	0	27
SRP_00315	Bacteria_small_SRP links to Rfam database...	0.63	0.43	0.91	10	2915	1	0	1	0	13
SRP_00317	Metazoa_SRP links to Rfam database...	0.47	0.36	0.63	35	45094	21	0	21	0	63
SRP_00318	Bacteria_small_SRP links to Rfam database...	0.69	0.48	1.00	11	2992	0	0	0	0	12
SRP_00321	Archaea_SRP links to Rfam database...	0.37	0.25	0.56	27	47538	22	1	20	1	81
SRP_00322	Archaea_SRP links to Rfam database...	0.47	0.34	0.66	37	48460	20	2	17	1	72
SRP_00323	Archaea_SRP links to Rfam database...	0.53	0.36	0.76	39	47227	13	0	12	1	68
SRP_00324	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	5344	12	2	10	0	29
SRP_00325	Bacteria_small_SRP links to Rfam database...	0.36	0.21	0.64	7	4360	4	0	4	0	26
SRP_00330	Archaea_SRP links to Rfam database...	0.38	0.25	0.57	24	50044	20	1	17	2	71
SRP_00332	Archaea_SRP links to Rfam database...	0.70	0.58	0.86	61	50332	11	0	10	1	45
SRP_00335	Bacteria_large_SRP links to Rfam database...	0.42	0.41	0.43	16	35208	34	11	10	13	23
SRP_00337	Bacteria_large_SRP links to Rfam database...	0.58	0.49	0.68	45	35445	21	4	17	0	46
SRP_00338	Bacteria_small_SRP links to Rfam database...	0.51	0.33	0.80	12	5445	4	0	3	1	24
SRP_00339	Archaea_SRP links to Rfam database...	0.36	0.26	0.50	24	44503	25	1	23	1	70
SRP_00340	Metazoa_SRP links to Rfam database...	0.21	0.13	0.34	11	41296	23	1	20	2	71
SRP_00342	Bacteria_small_SRP links to Rfam database...	0.38	0.24	0.60	6	3995	4	0	4	0	19
SRP_00347	Metazoa_SRP links to Rfam database...	0.40	0.28	0.57	27	46618	21	1	19	1	69
SRP_00350	Bacteria_small_SRP links to Rfam database...	0.19	0.07	0.50	2	3912	2	0	2	0	25
SRP_00356	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	5043	7	1	6	0	30
SRP_00357	Bacteria_small_SRP links to Rfam database...	0.46	0.31	0.69	11	5340	5	0	5	0	25
SRP_00361	Plant_SRP links to Rfam database...	0.09	0.04	0.19	4	41884	18	1	16	1	86
SRP_00365	Bacteria_small_SRP links to Rfam database...	0.45	0.26	0.78	7	3394	2	0	2	0	20
SRP_00367	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6774	12	0	12	0	35
SRP_00369	Bacteria_small_SRP links to Rfam database...	0.30	0.17	0.55	6	5767	5	0	5	0	29
SRP_00371	Fungi_SRP links to Rfam database...	0.00	0.00	0.00	0	36310	5	0	5	0	82
SRP_00382	Fungi_SRP links to Rfam database...	0.06	0.02	0.18	3	141761	16	0	14	2	167
SRP_00383	Bacteria_small_SRP links to Rfam database...	0.54	0.42	0.71	10	3226	4	0	4	0	14

^top

Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.

Table of contents:

Overview

Performance plots

Performance of Afold - scored higher in this pairwise comparison

1. Total counts & total scores for Afold

2. Individual counts for Afold [ download as .csv ]

Performance of RSpredict(seed) - scored lower in this pairwise comparison

1. Total counts & total scores for RSpredict(seed)

2. Individual counts for RSpredict(seed) [ download as .csv ]