CompaRNA - on-line benchmarks of RNA structure prediction methods

Laboratory of Structural Bioinformatics @ Adam Mickiewicz University in Poznan

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Overview

Metric	Carnac(20)		Mastr(seed)
MCC	0.398	>	0.104
Average MCC ± 95% Confidence Intervals	0.360 ± 0.031	>	0.067 ± 0.023
Sensitivity	0.180	>	0.013
Positive Predictive Value	0.881	>	0.817
Total TP	4335	>	321
Total TN	14648523	<	14653049
Total FP	850	>	104
Total FP CONTRA	57	>	8
Total FP INCONS	527	>	64
Total FP COMP	266	>	32
Total FN	19749	<	23763
P-value	3.56938820447e-08

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Performance plots

Comparison of performance of Carnac(20) and Mastr(seed). Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data (individual counts for Carnac(20) and Mastr(seed)).
Average Matthews Correlation Coefficients (MCC) with 95% confidence intervals (CIs) were plotted for different RNA families, for which at least 3 members were present in the benchmarking dataset. 'n' denotes the number of MCCs used to calculate the average and CI. See tables below for raw data (individual counts for Carnac(20) and Mastr(seed)).
Comparison of average Matthews Correlation Coefficients (MCCs) for Carnac(20) and Mastr(seed). The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data (individual counts for Carnac(20) and Mastr(seed)).

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Performance of Carnac(20) - scored higher in this pairwise comparison

1. Total counts & total scores for Carnac(20)

Total Base Pair Counts
Total TP	4335
Total TN	14648523
Total FP	850
Total FP CONTRA	57
Total FP INCONS	527
Total FP COMP	266
Total FN	19749

Total Scores
MCC	0.398
Average MCC ± 95% Confidence Intervals	0.360 ± 0.031
Sensitivity	0.180
Positive Predictive Value	0.881
Nr of predictions	345

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2. Individual counts for Carnac(20) [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00004	RNaseP_bact_a links to Rfam database...	0.51	0.26	1.00	25	47870	0	0	0	0	72
ASE_00005	RNaseP_bact_a links to Rfam database...	0.45	0.21	0.96	25	57944	1	1	0	0	92
ASE_00006	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	47586	0	0	0	0	93
ASE_00012	RNaseP_bact_a links to Rfam database...	0.60	0.47	0.77	58	73845	21	1	16	4	65
ASE_00018	RNaseP_bact_a links to Rfam database...	0.53	0.33	0.86	44	80550	8	1	6	1	90
ASE_00020	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	73920	0	0	0	0	126
ASE_00021	RNaseP_bact_a links to Rfam database...	0.47	0.33	0.69	52	104121	28	1	22	5	108
ASE_00022	RNaseP_bact_b links to Rfam database...	0.54	0.33	0.87	41	82981	7	0	6	1	83
ASE_00028	RNaseP_bact_b links to Rfam database...	0.45	0.20	1.00	25	84641	0	0	0	0	101
ASE_00035	RNaseP_bact_a links to Rfam database...	0.50	0.31	0.80	37	70454	12	1	8	3	81
ASE_00037	RNaseP_bact_a links to Rfam database...	0.27	0.07	1.00	8	59332	0	0	0	0	102
ASE_00038	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	53628	0	0	0	0	101
ASE_00041	RNaseP_bact_a links to Rfam database...	0.40	0.19	0.84	21	57605	4	0	4	0	87
ASE_00042	RNaseP_bact_a links to Rfam database...	0.25	0.06	1.00	9	90091	0	0	0	0	136
ASE_00044	RNaseP_bact_a links to Rfam database...	0.42	0.20	0.88	21	54591	7	0	3	4	84
ASE_00045	RNaseP_bact_b links to Rfam database...	0.37	0.14	1.00	11	47267	0	0	0	0	69
ASE_00064	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	45451	0	0	0	0	89
ASE_00068	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	37675	0	0	0	0	85
ASE_00074	RNaseP_bact_a links to Rfam database...	0.45	0.21	0.96	25	67870	1	1	0	0	94
ASE_00077	RNaseP_bact_a links to Rfam database...	0.34	0.13	0.92	11	45138	1	0	1	0	75
ASE_00078	RNaseP_bact_a links to Rfam database...	0.50	0.25	1.00	21	43050	1	0	0	1	62
ASE_00081	RNaseP_bact_a links to Rfam database...	0.15	0.05	0.45	5	49759	7	0	6	1	92
ASE_00082	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	70500	0	0	0	0	116
ASE_00084	RNaseP_bact_a links to Rfam database...	0.40	0.16	1.00	16	53612	1	0	0	1	83
ASE_00090	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	55611	0	0	0	0	101
ASE_00092	RNaseP_bact_a links to Rfam database...	0.39	0.17	0.90	19	63525	3	0	2	1	94
ASE_00099	RNaseP_bact_a links to Rfam database...	0.45	0.21	0.96	25	64594	1	1	0	0	95
ASE_00104	RNaseP_bact_a links to Rfam database...	0.42	0.19	0.92	23	64236	2	1	1	0	96
ASE_00105	RNaseP_bact_a links to Rfam database...	0.36	0.20	0.67	22	64228	12	0	11	1	89
ASE_00114	RNaseP_bact_b links to Rfam database...	0.21	0.10	0.44	8	45433	10	0	10	0	69
ASE_00118	RNaseP_bact_a links to Rfam database...	0.33	0.11	1.00	11	60715	1	0	0	1	91
ASE_00119	RNaseP_bact_a links to Rfam database...	0.36	0.13	1.00	14	62821	0	0	0	0	94
ASE_00123	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	38503	0	0	0	0	85
ASE_00125	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	39340	0	0	0	0	88
ASE_00126	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	40470	0	0	0	0	82
ASE_00129	RNaseP_bact_a links to Rfam database...	0.30	0.11	0.86	12	62821	2	0	2	0	99
ASE_00131	RNaseP_bact_a links to Rfam database...	0.31	0.09	1.00	8	39332	0	0	0	0	77
ASE_00135	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	63190	0	0	0	0	109
ASE_00138	RNaseP_bact_a links to Rfam database...	0.22	0.05	1.00	4	40466	0	0	0	0	77
ASE_00142	RNaseP_bact_a links to Rfam database...	0.41	0.17	0.95	21	67139	1	1	0	0	101
ASE_00146	RNaseP_bact_a links to Rfam database...	0.40	0.18	0.92	22	70852	2	0	2	0	102
ASE_00153	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	57626	4	1	3	0	73
ASE_00161	RNaseP_bact_b links to Rfam database...	0.61	0.41	0.90	36	53588	4	0	4	0	51
ASE_00170	RNaseP_bact_a links to Rfam database...	0.52	0.27	1.00	25	48803	1	0	0	1	68
ASE_00171	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	48512	4	0	4	0	94
ASE_00172	RNaseP_bact_a links to Rfam database...	0.27	0.08	1.00	8	58988	0	0	0	0	98
ASE_00179	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	44253	0	0	0	0	84
ASE_00180	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	51360	0	0	0	0	100
ASE_00181	RNaseP_bact_a links to Rfam database...	0.22	0.05	1.00	5	57625	0	0	0	0	101
ASE_00182	RNaseP_bact_a links to Rfam database...	0.19	0.04	0.86	6	84248	1	0	1	0	130
ASE_00183	RNaseP_bact_a links to Rfam database...	0.34	0.14	0.80	16	61405	4	0	4	0	97
ASE_00184	RNaseP_bact_a links to Rfam database...	0.33	0.11	1.00	11	54604	1	0	0	1	91
ASE_00185	RNaseP_bact_a links to Rfam database...	0.37	0.14	1.00	18	73518	0	0	0	0	110
ASE_00186	RNaseP_bact_a links to Rfam database...	0.45	0.22	0.94	29	78972	7	1	1	5	103
ASE_00190	RNaseP_bact_b links to Rfam database...	0.29	0.11	0.77	10	45438	6	0	3	3	80
ASE_00197	RNaseP_bact_a links to Rfam database...	0.33	0.12	0.94	17	89235	5	1	0	4	128
ASE_00198	RNaseP_bact_a links to Rfam database...	0.16	0.04	0.67	4	52644	2	0	2	0	98
ASE_00203	RNaseP_bact_a links to Rfam database...	0.35	0.13	1.00	12	46653	0	0	0	0	84
ASE_00212	RNaseP_bact_a links to Rfam database...	0.45	0.24	0.85	35	93920	11	1	5	5	113
ASE_00214	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	56280	0	0	0	0	103
ASE_00215	RNaseP_bact_a links to Rfam database...	0.19	0.07	0.54	7	48503	6	0	6	0	92
ASE_00216	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	39340	0	0	0	0	82
ASE_00217	RNaseP_bact_a links to Rfam database...	0.42	0.19	0.94	17	40452	1	1	0	0	73
ASE_00221	RNaseP_bact_a links to Rfam database...	0.36	0.15	0.89	17	64601	2	0	2	0	100
ASE_00228	RNaseP_bact_a links to Rfam database...	0.41	0.19	0.89	16	46953	3	0	2	1	70
ASE_00229	RNaseP_bact_a links to Rfam database...	0.28	0.08	1.00	7	42479	0	0	0	0	80
ASE_00231	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	47895	0	0	0	0	96
ASE_00232	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	38503	0	0	0	0	84
ASE_00234	RNaseP_bact_a links to Rfam database...	0.38	0.18	0.82	23	75438	6	0	5	1	106
ASE_00238	RNaseP_bact_a links to Rfam database...	0.18	0.04	0.71	5	64254	2	0	2	0	109
ASE_00241	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	43956	0	0	0	0	87
ASE_00242	RNaseP_bact_a links to Rfam database...	0.44	0.21	0.96	23	61051	1	0	1	0	89
ASE_00248	RNaseP_bact_a links to Rfam database...	0.72	0.55	0.94	63	62414	5	0	4	1	51
ASE_00254	RNaseP_bact_a links to Rfam database...	0.54	0.30	0.96	25	36830	1	0	1	0	57
ASE_00255	RNaseP_bact_a links to Rfam database...	0.67	0.55	0.84	71	74606	16	1	13	2	59
ASE_00257	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	51040	0	0	0	0	97
ASE_00263	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	70500	0	0	0	0	120
ASE_00267	RNaseP_bact_a links to Rfam database...	0.46	0.22	1.00	19	45131	1	0	0	1	69
ASE_00270	RNaseP_bact_a links to Rfam database...	0.30	0.10	0.87	13	72375	2	0	2	0	115
ASE_00274	RNaseP_bact_a links to Rfam database...	0.18	0.04	0.80	4	55606	1	0	1	0	99
ASE_00277	RNaseP_bact_a links to Rfam database...	0.27	0.10	0.75	9	48193	3	0	3	0	82
ASE_00279	RNaseP_bact_a links to Rfam database...	0.24	0.06	1.00	6	53295	0	0	0	0	95
ASE_00280	RNaseP_bact_a links to Rfam database...	0.40	0.20	0.80	20	51978	5	0	5	0	78
ASE_00281	RNaseP_bact_a links to Rfam database...	0.24	0.06	1.00	5	44546	1	0	0	1	83
ASE_00282	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	77815	0	0	0	0	127
ASE_00283	RNaseP_bact_a links to Rfam database...	0.18	0.05	0.71	5	61769	3	0	2	1	102
ASE_00284	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	58311	0	0	0	0	108
ASE_00285	RNaseP_bact_a links to Rfam database...	0.50	0.27	0.94	33	68971	3	0	2	1	89
ASE_00286	RNaseP_bact_a links to Rfam database...	0.19	0.04	0.80	4	46660	1	0	1	0	88
ASE_00287	RNaseP_bact_a links to Rfam database...	0.18	0.04	0.80	4	54941	1	0	1	0	99
ASE_00292	RNaseP_bact_a links to Rfam database...	0.53	0.32	0.88	44	81760	7	1	5	1	94
ASE_00294	RNaseP_bact_a links to Rfam database...	0.47	0.22	0.97	38	114442	1	1	0	0	133
ASE_00296	RNaseP_bact_a links to Rfam database...	0.42	0.20	0.88	29	91773	5	1	3	1	116
ASE_00297	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	52975	0	0	0	0	98
ASE_00298	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	67528	0	0	0	0	113
ASE_00305	RNaseP_bact_b links to Rfam database...	0.75	0.58	0.98	49	54565	2	0	1	1	36
ASE_00318	RNaseP_bact_b links to Rfam database...	0.55	0.32	0.95	38	80160	4	0	2	2	80
ASE_00321	RNaseP_bact_b links to Rfam database...	0.71	0.51	0.98	45	54569	4	0	1	3	43
ASE_00328	RNaseP_bact_b links to Rfam database...	0.73	0.55	0.97	62	72707	8	0	2	6	50
ASE_00332	RNaseP_bact_a links to Rfam database...	0.49	0.25	0.95	35	81773	3	0	2	1	103
ASE_00335	RNaseP_bact_b links to Rfam database...	0.65	0.46	0.93	53	75409	9	0	4	5	63
ASE_00340	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46056	3	0	0	3	85
ASE_00342	RNaseP_bact_a links to Rfam database...	0.45	0.21	0.96	24	62456	1	1	0	0	91
ASE_00353	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	57970	0	0	0	0	107
ASE_00361	RNaseP_bact_a links to Rfam database...	0.18	0.03	1.00	4	75462	0	0	0	0	123
ASE_00362	RNaseP_bact_a links to Rfam database...	0.23	0.05	1.00	5	48200	1	0	0	1	86
ASE_00363	RNaseP_bact_a links to Rfam database...	0.33	0.12	0.92	11	51348	2	0	1	1	83
ASE_00364	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	54285	0	0	0	0	105
ASE_00366	RNaseP_bact_a links to Rfam database...	0.23	0.08	0.67	8	58641	4	0	4	0	90
ASE_00367	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	43071	0	0	0	0	86
ASE_00369	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	55945	0	0	0	0	107
ASE_00370	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	41905	0	0	0	0	84
ASE_00372	RNaseP_bact_a links to Rfam database...	0.18	0.04	0.80	4	51998	1	0	1	0	96
ASE_00374	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	44850	0	0	0	0	88
ASE_00376	RNaseP_bact_a links to Rfam database...	0.16	0.04	0.67	4	56947	2	0	2	0	101
ASE_00377	RNaseP_bact_a links to Rfam database...	0.24	0.07	0.80	8	57620	3	0	2	1	99
ASE_00379	RNaseP_bact_a links to Rfam database...	0.24	0.06	1.00	5	46051	0	0	0	0	84
ASE_00382	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	41905	0	0	0	0	84
ASE_00383	RNaseP_bact_a links to Rfam database...	0.19	0.04	1.00	4	54611	0	0	0	0	101
ASE_00384	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	48516	0	0	0	0	92
ASE_00386	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	50403	0	0	0	0	96
ASE_00387	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	55945	0	0	0	0	104
ASE_00388	RNaseP_bact_a links to Rfam database...	0.44	0.20	0.95	18	45734	2	0	1	1	71
ASE_00390	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	42195	0	0	0	0	85
ASE_00393	RNaseP_bact_a links to Rfam database...	0.39	0.16	0.94	15	47879	1	0	1	0	78
ASE_00394	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46971	0	0	0	0	93
ASE_00395	RNaseP_bact_a links to Rfam database...	0.24	0.06	1.00	5	41611	1	0	0	1	79
ASE_00396	RNaseP_bact_a links to Rfam database...	0.36	0.14	0.92	12	41603	1	0	1	0	71
ASE_00397	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	54615	0	0	0	0	105
ASE_00398	RNaseP_bact_a links to Rfam database...	0.43	0.18	1.00	19	55926	1	0	0	1	85
ASE_00400	RNaseP_bact_a links to Rfam database...	0.54	0.31	0.94	33	57935	2	0	2	0	73
ASE_00401	RNaseP_bact_a links to Rfam database...	0.15	0.03	0.67	4	77022	2	0	2	0	122
ASE_00402	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	42486	0	0	0	0	85
ASE_00403	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	55945	0	0	0	0	107
ASE_00404	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	43071	0	0	0	0	85
ASE_00406	RNaseP_bact_a links to Rfam database...	0.44	0.23	0.85	22	48802	7	0	4	3	72
ASE_00411	RNaseP_bact_a links to Rfam database...	0.41	0.22	0.74	20	49428	8	0	7	1	69
ASE_00412	RNaseP_bact_a links to Rfam database...	0.19	0.08	0.47	8	58294	10	0	9	1	97
ASE_00413	RNaseP_bact_a links to Rfam database...	0.33	0.12	0.91	10	44540	1	0	1	0	71
ASE_00415	RNaseP_bact_a links to Rfam database...	0.16	0.04	0.67	4	54940	2	0	2	0	99
ASE_00416	RNaseP_bact_a links to Rfam database...	0.40	0.18	0.88	23	77395	6	1	2	3	104
ASE_00419	RNaseP_bact_a links to Rfam database...	0.39	0.16	1.00	16	54930	1	0	0	1	87
ASE_00422	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46971	0	0	0	0	94
ASE_00423	RNaseP_bact_a links to Rfam database...	0.57	0.37	0.89	40	56908	6	1	4	1	69
ASE_00427	RNaseP_nuc links to Rfam database...	0.31	0.15	0.64	7	40744	4	0	4	0	39
ASE_00428	RNaseP_bact_a links to Rfam database...	0.43	0.19	0.96	24	76611	2	1	0	1	101
ASE_00430	RNaseP_bact_a links to Rfam database...	0.49	0.24	1.00	23	46948	0	0	0	0	74
ASE_00437	RNaseP_bact_a links to Rfam database...	0.22	0.10	0.52	13	79376	12	1	11	0	122
ASE_00441	RNaseP_bact_a links to Rfam database...	0.41	0.17	1.00	19	64242	0	0	0	0	93
ASE_00448	RNaseP_bact_a links to Rfam database...	0.55	0.33	0.93	37	64221	8	1	2	5	75
ASE_00451	RNaseP_bact_a links to Rfam database...	0.47	0.24	0.91	30	70843	3	1	2	0	95
CRW_00306	SSU_rRNA_eukarya links to Rfam database...	0.55	0.32	0.95	146	1445697	38	0	7	31	316
CRW_00379	SSU_rRNA_eukarya links to Rfam database...	0.49	0.26	0.93	140	2126802	50	1	10	39	394
CRW_01484	5S_rRNA links to Rfam database...	0.70	0.49	1.00	19	7484	0	0	0	0	20
CRW_01499	5S_rRNA links to Rfam database...	0.66	0.46	0.95	19	7981	2	0	1	1	22
CRW_01535	5S_rRNA links to Rfam database...	0.77	0.73	0.82	27	7107	8	0	6	2	10
CRW_01590	5S_rRNA links to Rfam database...	0.87	0.76	1.00	28	7112	1	0	0	1	9
CRW_01603	5S_rRNA links to Rfam database...	0.79	0.70	0.90	26	7111	4	0	3	1	11
PDB_00012	mir-TAR links to Rfam database...	1.00	1.00	1.00	7	399	3	0	0	3	0
PDB_00070	tRNA links to Rfam database...	0.69	0.58	0.82	14	2833	3	0	3	0	10
PDB_00213	Gammaretro_CES links to Rfam database...	0.58	0.34	1.00	14	5036	0	0	0	0	27
PDB_00553	mir-TAR links to Rfam database...	0.00	0.00	0.00	0	465	0	0	0	0	11
PDB_00741	Entero_5_CRE links to Rfam database...	0.45	0.29	0.71	5	696	2	0	2	0	12
PDB_00810	s2m links to Rfam database...	0.64	0.41	1.00	7	1074	0	0	0	0	10
PDB_00828	Purine links to Rfam database...	0.88	0.78	1.00	21	2464	0	0	0	0	6
PDB_00829	Purine links to Rfam database...	0.86	0.75	1.00	18	2260	0	0	0	0	6
PDB_00876	HIV_FE links to Rfam database...	0.00	0.00	0.00	0	990	0	0	0	0	20
PDB_01020	Purine links to Rfam database...	0.86	0.74	1.00	17	2261	1	0	0	1	6
PDB_01050	UnaL2 links to Rfam database...	0.62	0.38	1.00	5	625	1	0	0	1	8
PDB_01073	SAM links to Rfam database...	0.75	0.56	1.00	19	4352	1	0	0	1	15
PDB_01114	TPP links to Rfam database...	0.38	0.15	1.00	4	2846	0	0	0	0	23
PDB_01152	HIV_FS2 links to Rfam database...	0.88	0.79	1.00	11	550	0	0	0	0	3
PDB_01236	ykoK links to Rfam database...	0.69	0.50	0.96	27	11600	2	0	1	1	27
RFA_00389	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00390	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00391	Hammerhead_3 links to Rfam database...	0.93	0.87	1.00	13	1418	2	0	0	2	2
RFA_00396	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	2	0	0	2	1
RFA_00402	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	0	0	0	0	0
RFA_00409	Hammerhead_3 links to Rfam database...	0.77	0.60	1.00	9	1422	1	0	0	1	6
RFA_00416	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1470	3	0	0	3	0
RFA_00433	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00434	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00436	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00440	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1470	2	0	0	2	0
RFA_00442	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00444	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1525	1	0	0	1	0
RFA_00583	Y_RNA links to Rfam database...	0.00	0.00	0.00	0	4946	5	0	4	1	15
RFA_00584	Y_RNA links to Rfam database...	0.00	0.00	0.00	0	2926	0	0	0	0	15
RFA_00585	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4836	2	0	0	2	0
RFA_00586	Y_RNA links to Rfam database...	0.00	0.00	0.00	0	3909	7	0	7	0	15
RFA_00587	Y_RNA links to Rfam database...	0.00	0.00	0.00	0	4843	9	4	4	1	15
RFA_00588	Y_RNA links to Rfam database...	0.00	0.00	0.00	0	4560	0	0	0	0	15
RFA_00589	Y_RNA links to Rfam database...	0.00	0.00	0.00	0	4371	0	0	0	0	15
RFA_00594	Y_RNA links to Rfam database...	0.73	0.53	1.00	8	2767	0	0	0	0	7
RFA_00596	Y_RNA links to Rfam database...	0.00	0.00	0.00	0	5995	0	0	0	0	15
RFA_00599	Telomerase-vert links to Rfam database...	0.00	0.00	0.00	0	101475	0	0	0	0	111
RFA_00601	Telomerase-vert links to Rfam database...	0.00	0.00	0.00	0	99235	0	0	0	0	114
RFA_00602	Telomerase-vert links to Rfam database...	0.00	0.00	0.00	0	101475	0	0	0	0	116
RFA_00658	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	1128	0	0	0	0	14
RFA_00664	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	990	0	0	0	0	14
RFA_00667	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	990	0	0	0	0	14
RFA_00668	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	990	0	0	0	0	14
RFA_00672	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	903	0	0	0	0	13
RFA_00673	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	1128	0	0	0	0	14
RFA_00674	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	1128	0	0	0	0	14
RFA_00675	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	990	0	0	0	0	14
RFA_00677	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	990	0	0	0	0	14
RFA_00678	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	946	0	0	0	0	14
RFA_00680	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	1128	0	0	0	0	14
RFA_00704	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	990	0	0	0	0	14
RFA_00707	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	1035	0	0	0	0	14
RFA_00715	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	946	0	0	0	0	14
RFA_00717	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	903	0	0	0	0	14
RFA_00730	s2m links to Rfam database...	0.64	0.42	1.00	5	898	1	0	0	1	7
RFA_00731	s2m links to Rfam database...	0.64	0.42	1.00	5	898	1	0	0	1	7
RFA_00733	s2m links to Rfam database...	0.64	0.42	1.00	5	898	1	0	0	1	7
RFA_00734	s2m links to Rfam database...	0.64	0.42	1.00	5	898	0	0	0	0	7
RFA_00736	s2m links to Rfam database...	0.64	0.42	1.00	5	898	1	0	0	1	7
RFA_00737	s2m links to Rfam database...	0.64	0.42	1.00	5	898	1	0	0	1	7
RFA_00745	s2m links to Rfam database...	0.64	0.42	1.00	5	941	1	0	0	1	7
RFA_00749	s2m links to Rfam database...	0.64	0.42	1.00	5	898	1	0	0	1	7
RFA_00758	s2m links to Rfam database...	0.00	0.00	0.00	0	903	0	0	0	0	12
RFA_00762	s2m links to Rfam database...	0.64	0.42	1.00	5	898	0	0	0	0	7
RFA_00763	s2m links to Rfam database...	0.64	0.42	1.00	5	898	1	0	0	1	7
RFA_00764	s2m links to Rfam database...	0.64	0.42	1.00	5	898	1	0	0	1	7
RFA_00765	s2m links to Rfam database...	0.64	0.42	1.00	5	898	1	0	0	1	7
RFA_00786	Gammaretro_CES links to Rfam database...	0.25	0.13	0.50	4	5042	4	1	3	0	28
RFA_00791	Gammaretro_CES links to Rfam database...	0.00	0.00	0.00	0	5151	0	0	0	0	32
RFA_00792	Gammaretro_CES links to Rfam database...	0.00	0.00	0.00	0	5046	4	1	3	0	32
RFA_00801	Gammaretro_CES links to Rfam database...	0.31	0.16	0.63	5	5042	4	0	3	1	27
SPR_00064	tRNA links to Rfam database...	0.90	0.81	1.00	17	2833	0	0	0	0	4
SPR_00111	tRNA links to Rfam database...	0.90	0.81	1.00	17	2684	0	0	0	0	4
SPR_00273	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00277	tRNA links to Rfam database...	0.72	0.52	1.00	11	2915	0	0	0	0	10
SPR_00314	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	2	0	0	2	0
SPR_00434	tRNA links to Rfam database...	0.90	0.81	1.00	17	2833	0	0	0	0	4
SPR_00452	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00595	tRNA links to Rfam database...	0.75	0.57	1.00	12	2763	0	0	0	0	9
SPR_00721	tRNA links to Rfam database...	0.72	0.57	0.92	12	2913	3	0	1	2	9
SPR_00867	tRNA links to Rfam database...	0.95	0.95	0.95	20	2905	4	0	1	3	1
SPR_01157	tRNA links to Rfam database...	0.76	0.76	0.76	16	2754	6	0	5	1	5
SRP_00006	Metazoa_SRP links to Rfam database...	0.68	0.48	0.98	48	45704	6	0	1	5	53
SRP_00008	Bacteria_small_SRP links to Rfam database...	0.85	0.72	1.00	18	2908	0	0	0	0	7
SRP_00011	Plant_SRP links to Rfam database...	0.57	0.33	1.00	34	46326	1	0	0	1	70
SRP_00015	Plant_SRP links to Rfam database...	0.65	0.46	0.90	46	46309	7	0	5	2	53
SRP_00020	Bacteria_small_SRP links to Rfam database...	0.52	0.27	1.00	9	5556	0	0	0	0	24
SRP_00024	Bacteria_large_SRP links to Rfam database...	0.22	0.06	0.83	5	37669	1	0	1	0	82
SRP_00026	Bacteria_large_SRP links to Rfam database...	0.24	0.06	1.00	5	36851	0	0	0	0	83
SRP_00027	Bacteria_large_SRP links to Rfam database...	0.24	0.06	1.00	5	37123	0	0	0	0	82
SRP_00030	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	36856	0	0	0	0	88
SRP_00031	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	36315	0	0	0	0	89
SRP_00037	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	36585	0	0	0	0	87
SRP_00038	Bacteria_small_SRP links to Rfam database...	0.19	0.12	0.31	4	5037	9	0	9	0	29
SRP_00042	Bacteria_small_SRP links to Rfam database...	0.54	0.36	0.82	9	3994	3	1	1	1	16
SRP_00044	Bacteria_small_SRP links to Rfam database...	0.31	0.09	1.00	3	6102	0	0	0	0	29
SRP_00046	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	4744	9	1	8	0	32
SRP_00050	Metazoa_SRP links to Rfam database...	0.60	0.44	0.81	44	44796	12	0	10	2	55
SRP_00051	Bacteria_small_SRP links to Rfam database...	0.32	0.10	1.00	3	5457	0	0	0	0	27
SRP_00054	Bacteria_small_SRP links to Rfam database...	0.31	0.09	1.00	3	5562	0	0	0	0	29
SRP_00057	Bacteria_small_SRP links to Rfam database...	0.29	0.09	1.00	3	6325	0	0	0	0	32
SRP_00058	Bacteria_small_SRP links to Rfam database...	0.30	0.09	1.00	3	5775	0	0	0	0	31
SRP_00066	Metazoa_SRP links to Rfam database...	0.60	0.40	0.89	40	45406	8	0	5	3	60
SRP_00072	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6323	5	2	3	0	29
SRP_00074	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6551	4	0	4	0	29
SRP_00075	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	5555	10	2	8	0	34
SRP_00077	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6666	4	0	4	0	37
SRP_00081	Bacteria_small_SRP links to Rfam database...	0.31	0.10	1.00	3	5562	0	0	0	0	28
SRP_00084	Bacteria_small_SRP links to Rfam database...	0.30	0.09	1.00	3	5457	0	0	0	0	31
SRP_00086	Metazoa_SRP links to Rfam database...	0.65	0.47	0.89	47	44200	7	0	6	1	53
SRP_00088	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	34191	0	0	0	0	89
SRP_00089	Bacteria_large_SRP links to Rfam database...	0.24	0.06	1.00	5	35773	0	0	0	0	85
SRP_00090	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	35511	0	0	0	0	90
SRP_00094	Bacteria_small_SRP links to Rfam database...	0.59	0.50	0.71	12	4078	5	1	4	0	12
SRP_00095	Bacteria_small_SRP links to Rfam database...	0.40	0.28	0.58	7	3993	5	1	4	0	18
SRP_00098	Bacteria_small_SRP links to Rfam database...	0.28	0.08	1.00	3	6438	0	0	0	0	34
SRP_00102	Metazoa_SRP links to Rfam database...	0.62	0.46	0.84	46	44496	12	1	8	3	55
SRP_00103	Metazoa_SRP links to Rfam database...	0.64	0.44	0.92	45	45402	7	0	4	3	57
SRP_00105	Bacteria_small_SRP links to Rfam database...	0.30	0.09	1.00	3	5562	0	0	0	0	31
SRP_00107	Bacteria_small_SRP links to Rfam database...	0.40	0.16	1.00	3	3652	0	0	0	0	16
SRP_00121	Bacteria_small_SRP links to Rfam database...	0.35	0.12	1.00	3	4275	0	0	0	0	22
SRP_00128	Bacteria_small_SRP links to Rfam database...	0.29	0.08	1.00	3	6783	0	0	0	0	33
SRP_00132	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	4845	6	1	5	0	29
SRP_00134	Bacteria_large_SRP links to Rfam database...	0.32	0.10	1.00	3	5992	0	0	0	0	26
SRP_00141	Bacteria_small_SRP links to Rfam database...	0.27	0.07	1.00	3	6325	0	0	0	0	38
SRP_00152	Plant_SRP links to Rfam database...	0.58	0.39	0.87	40	45707	6	0	6	0	63
SRP_00161	Bacteria_small_SRP links to Rfam database...	0.64	0.45	0.91	10	2839	1	0	1	0	12
SRP_00162	Bacteria_small_SRP links to Rfam database...	0.61	0.61	0.61	14	2903	11	2	7	2	9
SRP_00163	Bacteria_small_SRP links to Rfam database...	0.34	0.12	1.00	3	3483	0	0	0	0	23
SRP_00164	Bacteria_small_SRP links to Rfam database...	0.29	0.09	1.00	3	6900	0	0	0	0	32
SRP_00170	Bacteria_small_SRP links to Rfam database...	0.64	0.48	0.86	12	4081	3	1	1	1	13
SRP_00171	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	45435	16	2	14	0	88
SRP_00173	Bacteria_large_SRP links to Rfam database...	0.24	0.06	1.00	5	38221	0	0	0	0	85
SRP_00174	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	38781	0	0	0	0	86
SRP_00178	Plant_SRP links to Rfam database...	0.53	0.28	1.00	29	45724	2	0	0	2	73
SRP_00179	Plant_SRP links to Rfam database...	0.70	0.50	0.96	53	46001	5	0	2	3	52
SRP_00181	Plant_SRP links to Rfam database...	0.56	0.31	1.00	32	46024	2	0	0	2	70
SRP_00182	Plant_SRP links to Rfam database...	0.43	0.22	0.85	22	46030	4	0	4	0	79
SRP_00184	Plant_SRP links to Rfam database...	0.35	0.16	0.76	16	46035	8	0	5	3	84
SRP_00188	Plant_SRP links to Rfam database...	0.24	0.11	0.53	9	31108	8	1	7	0	70
SRP_00194	Bacteria_small_SRP links to Rfam database...	0.38	0.14	1.00	3	3237	0	0	0	0	18
SRP_00200	Bacteria_small_SRP links to Rfam database...	0.29	0.08	1.00	3	6900	0	0	0	0	33
SRP_00209	Bacteria_small_SRP links to Rfam database...	0.30	0.19	0.50	5	4646	5	0	5	0	22
SRP_00213	Bacteria_small_SRP links to Rfam database...	0.58	0.40	0.83	10	4174	2	1	1	0	15
SRP_00215	Bacteria_small_SRP links to Rfam database...	0.35	0.12	1.00	3	3237	0	0	0	0	22
SRP_00227	Bacteria_small_SRP links to Rfam database...	0.69	0.48	1.00	15	5136	0	0	0	0	16
SRP_00228	Metazoa_SRP links to Rfam database...	0.77	0.61	0.98	58	45392	3	0	1	2	37
SRP_00231	Bacteria_small_SRP links to Rfam database...	0.53	0.47	0.59	16	5433	11	1	10	0	18
SRP_00233	Bacteria_small_SRP links to Rfam database...	0.30	0.09	1.00	3	5148	0	0	0	0	30
SRP_00234	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	36315	0	0	0	0	86
SRP_00243	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	5145	6	1	5	0	31
SRP_00244	Bacteria_small_SRP links to Rfam database...	0.28	0.08	1.00	3	6900	0	0	0	0	36
SRP_00250	Bacteria_small_SRP links to Rfam database...	0.29	0.08	1.00	3	6783	0	0	0	0	33
SRP_00251	Bacteria_small_SRP links to Rfam database...	0.29	0.08	1.00	3	7018	0	0	0	0	33
SRP_00266	Bacteria_small_SRP links to Rfam database...	0.32	0.10	1.00	3	4653	0	0	0	0	26
SRP_00268	Bacteria_small_SRP links to Rfam database...	0.64	0.48	0.87	13	4171	2	1	1	0	14
SRP_00269	Bacteria_small_SRP links to Rfam database...	0.72	0.52	1.00	17	5033	0	0	0	0	16
SRP_00270	Bacteria_small_SRP links to Rfam database...	0.44	0.19	1.00	6	4650	0	0	0	0	25
SRP_00271	Bacteria_small_SRP links to Rfam database...	0.35	0.13	1.00	3	3237	0	0	0	0	21
SRP_00273	Bacteria_small_SRP links to Rfam database...	0.56	0.48	0.66	19	6757	10	1	9	0	21
SRP_00274	Bacteria_small_SRP links to Rfam database...	0.28	0.08	1.00	3	6900	0	0	0	0	35
SRP_00295	Bacteria_small_SRP links to Rfam database...	0.71	0.50	1.00	19	6884	0	0	0	0	19
SRP_00303	Bacteria_small_SRP links to Rfam database...	0.31	0.09	1.00	3	6667	0	0	0	0	29
SRP_00308	Bacteria_large_SRP links to Rfam database...	0.30	0.10	0.90	9	36305	1	0	1	0	79
SRP_00310	Bacteria_small_SRP links to Rfam database...	0.47	0.26	0.86	6	2919	1	0	1	0	17
SRP_00312	Bacteria_small_SRP links to Rfam database...	0.55	0.37	0.83	10	4174	2	1	1	0	17
SRP_00315	Bacteria_small_SRP links to Rfam database...	0.47	0.26	0.86	6	2919	1	0	1	0	17
SRP_00317	Metazoa_SRP links to Rfam database...	0.58	0.38	0.88	37	45108	6	0	5	1	61
SRP_00318	Bacteria_small_SRP links to Rfam database...	0.47	0.26	0.86	6	2996	1	0	1	0	17
SRP_00325	Bacteria_small_SRP links to Rfam database...	0.72	0.52	1.00	17	4354	0	0	0	0	16
SRP_00326	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	5050	0	0	0	0	31
SRP_00333	Bacteria_small_SRP links to Rfam database...	0.30	0.09	1.00	3	5148	0	0	0	0	31
SRP_00335	Bacteria_large_SRP links to Rfam database...	0.28	0.08	1.00	3	35242	0	0	0	0	36
SRP_00337	Bacteria_large_SRP links to Rfam database...	0.23	0.05	1.00	5	35506	0	0	0	0	86
SRP_00338	Bacteria_small_SRP links to Rfam database...	0.29	0.08	1.00	3	5457	0	0	0	0	33
SRP_00341	Bacteria_small_SRP links to Rfam database...	0.31	0.10	1.00	3	4750	0	0	0	0	28
SRP_00342	Bacteria_small_SRP links to Rfam database...	0.35	0.12	1.00	3	4002	0	0	0	0	22
SRP_00347	Metazoa_SRP links to Rfam database...	0.71	0.53	0.96	51	46612	3	0	2	1	45
SRP_00350	Bacteria_small_SRP links to Rfam database...	0.52	0.33	0.82	9	3905	2	1	1	0	18
SRP_00356	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	5043	7	2	5	0	30
SRP_00357	Bacteria_small_SRP links to Rfam database...	0.29	0.08	1.00	3	5353	0	0	0	0	33
SRP_00358	Bacteria_small_SRP links to Rfam database...	0.29	0.09	1.00	3	6325	0	0	0	0	32
SRP_00367	Bacteria_small_SRP links to Rfam database...	0.29	0.09	1.00	3	6783	0	0	0	0	32
SRP_00368	Metazoa_SRP links to Rfam database...	0.55	0.39	0.78	38	43907	14	0	11	3	60
SRP_00369	Bacteria_small_SRP links to Rfam database...	0.29	0.09	1.00	3	5775	0	0	0	0	32
SRP_00383	Bacteria_small_SRP links to Rfam database...	0.35	0.13	1.00	3	3237	0	0	0	0	21

^top

Performance of Mastr(seed) - scored lower in this pairwise comparison

1. Total counts & total scores for Mastr(seed)

Total Base Pair Counts
Total TP	321
Total TN	14653049
Total FP	104
Total FP CONTRA	8
Total FP INCONS	64
Total FP COMP	32
Total FN	23763

Total Scores
MCC	0.104
Average MCC ± 95% Confidence Intervals	0.067 ± 0.023
Sensitivity	0.013
Positive Predictive Value	0.817
Nr of predictions	345

^top

2. Individual counts for Mastr(seed) [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00004	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	47895	0	0	0	0	97
ASE_00005	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	57970	0	0	0	0	117
ASE_00006	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	47586	0	0	0	0	93
ASE_00012	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	73920	0	0	0	0	123
ASE_00018	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	80601	0	0	0	0	134
ASE_00020	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	73920	0	0	0	0	126
ASE_00021	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	104196	0	0	0	0	160
ASE_00022	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	83028	0	0	0	0	124
ASE_00028	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	84666	0	0	0	0	126
ASE_00035	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	70500	0	0	0	0	118
ASE_00037	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	59340	0	0	0	0	110
ASE_00038	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	53628	0	0	0	0	101
ASE_00041	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	57630	0	0	0	0	108
ASE_00042	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	90100	0	0	0	0	145
ASE_00044	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	54615	0	0	0	0	105
ASE_00045	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	47278	0	0	0	0	80
ASE_00064	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	45451	0	0	0	0	89
ASE_00068	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	37675	0	0	0	0	85
ASE_00074	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	67896	0	0	0	0	119
ASE_00077	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	45150	0	0	0	0	86
ASE_00078	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	43071	0	0	0	0	83
ASE_00081	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	49770	0	0	0	0	97
ASE_00082	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	70500	0	0	0	0	116
ASE_00084	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	53628	0	0	0	0	99
ASE_00090	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	55611	0	0	0	0	101
ASE_00092	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	63546	0	0	0	0	113
ASE_00099	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	64620	0	0	0	0	120
ASE_00104	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	64261	0	0	0	0	119
ASE_00105	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	64261	0	0	0	0	111
ASE_00114	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	45451	0	0	0	0	77
ASE_00118	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	60726	0	0	0	0	102
ASE_00119	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	62835	0	0	0	0	108
ASE_00123	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	38503	0	0	0	0	85
ASE_00125	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	39340	0	0	0	0	88
ASE_00126	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	40470	0	0	0	0	82
ASE_00129	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	62835	0	0	0	0	111
ASE_00131	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	39340	0	0	0	0	85
ASE_00135	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	63190	0	0	0	0	109
ASE_00138	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	40470	0	0	0	0	81
ASE_00142	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	67161	0	0	0	0	122
ASE_00146	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	70876	0	0	0	0	124
ASE_00153	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	57630	0	0	0	0	73
ASE_00161	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	53628	0	0	0	0	87
ASE_00170	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	48828	0	0	0	0	93
ASE_00171	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	48516	0	0	0	0	94
ASE_00172	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	58996	0	0	0	0	106
ASE_00179	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	44253	0	0	0	0	84
ASE_00180	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	51360	0	0	0	0	100
ASE_00181	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	57630	0	0	0	0	106
ASE_00182	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	84255	0	0	0	0	136
ASE_00183	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	61425	0	0	0	0	113
ASE_00184	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	54615	0	0	0	0	102
ASE_00185	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	73536	0	0	0	0	128
ASE_00186	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	79003	0	0	0	0	132
ASE_00190	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	45451	0	0	0	0	90
ASE_00197	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	89253	0	0	0	0	145
ASE_00198	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	52650	0	0	0	0	102
ASE_00203	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46665	0	0	0	0	96
ASE_00212	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	93961	0	0	0	0	148
ASE_00214	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	56280	0	0	0	0	103
ASE_00215	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	48516	0	0	0	0	99
ASE_00216	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	39340	0	0	0	0	82
ASE_00217	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	40470	0	0	0	0	90
ASE_00221	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	64620	0	0	0	0	117
ASE_00228	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46971	0	0	0	0	86
ASE_00229	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	42486	0	0	0	0	87
ASE_00231	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	47895	0	0	0	0	96
ASE_00232	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	38503	0	0	0	0	84
ASE_00234	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	75466	0	0	0	0	129
ASE_00238	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	64261	0	0	0	0	114
ASE_00241	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	43956	0	0	0	0	87
ASE_00242	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	61075	0	0	0	0	112
ASE_00248	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	62481	0	0	0	0	114
ASE_00254	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	36856	0	0	0	0	82
ASE_00255	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	74691	0	0	0	0	130
ASE_00257	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	51040	0	0	0	0	97
ASE_00263	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	70500	0	0	0	0	120
ASE_00267	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	45150	0	0	0	0	88
ASE_00270	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	72390	0	0	0	0	128
ASE_00274	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	55611	0	0	0	0	103
ASE_00277	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	48205	0	0	0	0	91
ASE_00279	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	53301	0	0	0	0	101
ASE_00280	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	52003	0	0	0	0	98
ASE_00281	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	44551	0	0	0	0	88
ASE_00282	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	77815	0	0	0	0	127
ASE_00283	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	61776	0	0	0	0	107
ASE_00284	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	58311	0	0	0	0	108
ASE_00285	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	69006	0	0	0	0	122
ASE_00286	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46665	0	0	0	0	92
ASE_00287	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	54946	0	0	0	0	103
ASE_00292	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	81810	0	0	0	0	138
ASE_00294	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	114481	0	0	0	0	171
ASE_00296	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	91806	0	0	0	0	145
ASE_00297	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	52975	0	0	0	0	98
ASE_00298	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	67528	0	0	0	0	113
ASE_00305	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	54615	0	0	0	0	85
ASE_00318	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	80200	0	0	0	0	118
ASE_00321	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	54615	0	0	0	0	88
ASE_00328	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	72771	0	0	0	0	112
ASE_00332	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	81810	0	0	0	0	138
ASE_00335	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	75466	0	0	0	0	116
ASE_00340	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46056	0	0	0	0	85
ASE_00342	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	62481	0	0	0	0	115
ASE_00353	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	57970	0	0	0	0	107
ASE_00361	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	75466	0	0	0	0	127
ASE_00362	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	48205	0	0	0	0	91
ASE_00363	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	51360	0	0	0	0	94
ASE_00364	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	54285	0	0	0	0	105
ASE_00366	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	58653	0	0	0	0	98
ASE_00367	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	43071	0	0	0	0	86
ASE_00369	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	55945	0	0	0	0	107
ASE_00370	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	41905	0	0	0	0	84
ASE_00372	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	52003	0	0	0	0	100
ASE_00374	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	44850	0	0	0	0	88
ASE_00376	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	56953	0	0	0	0	105
ASE_00377	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	57630	0	0	0	0	107
ASE_00379	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46056	0	0	0	0	89
ASE_00382	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	41905	0	0	0	0	84
ASE_00383	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	54615	0	0	0	0	105
ASE_00384	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	48516	0	0	0	0	92
ASE_00386	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	50403	0	0	0	0	96
ASE_00387	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	55945	0	0	0	0	104
ASE_00388	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	45753	0	0	0	0	89
ASE_00390	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	42195	0	0	0	0	85
ASE_00393	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	47895	0	0	0	0	93
ASE_00394	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46971	0	0	0	0	93
ASE_00395	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	41616	0	0	0	0	84
ASE_00396	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	41616	0	0	0	0	83
ASE_00397	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	54615	0	0	0	0	105
ASE_00398	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	55945	0	0	0	0	104
ASE_00400	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	57970	0	0	0	0	106
ASE_00401	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	77028	0	0	0	0	126
ASE_00402	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	42486	0	0	0	0	85
ASE_00403	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	55945	0	0	0	0	107
ASE_00404	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	43071	0	0	0	0	85
ASE_00406	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	48828	0	0	0	0	94
ASE_00411	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	49455	0	0	0	0	89
ASE_00412	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	58311	0	0	0	0	105
ASE_00413	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	44551	0	0	0	0	81
ASE_00415	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	54946	0	0	0	0	103
ASE_00416	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	77421	0	0	0	0	127
ASE_00419	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	54946	0	0	0	0	103
ASE_00422	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46971	0	0	0	0	94
ASE_00423	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	56953	0	0	0	0	109
ASE_00427	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	40755	0	0	0	0	46
ASE_00428	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	76636	0	0	0	0	125
ASE_00430	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46971	0	0	0	0	97
ASE_00437	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	79401	0	0	0	0	135
ASE_00441	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	64261	0	0	0	0	112
ASE_00448	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	64261	0	0	0	0	112
ASE_00451	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	70876	0	0	0	0	125
CRW_00306	SSU_rRNA_eukarya links to Rfam database...	0.00	0.00	0.00	0	1445850	0	0	0	0	462
CRW_00379	SSU_rRNA_eukarya links to Rfam database...	0.00	0.00	0.00	0	2126953	0	0	0	0	534
CRW_01484	5S_rRNA links to Rfam database...	0.00	0.00	0.00	0	7503	0	0	0	0	39
CRW_01499	5S_rRNA links to Rfam database...	0.00	0.00	0.00	0	8001	0	0	0	0	41
CRW_01535	5S_rRNA links to Rfam database...	0.00	0.00	0.00	0	7140	0	0	0	0	37
CRW_01590	5S_rRNA links to Rfam database...	0.00	0.00	0.00	0	7140	0	0	0	0	37
CRW_01603	5S_rRNA links to Rfam database...	0.00	0.00	0.00	0	7140	0	0	0	0	37
PDB_00012	mir-TAR links to Rfam database...	0.00	0.00	0.00	0	406	0	0	0	0	7
PDB_00070	tRNA links to Rfam database...	0.00	0.00	0.00	0	2850	0	0	0	0	24
PDB_00213	Gammaretro_CES links to Rfam database...	0.81	0.73	0.91	30	5017	3	0	3	0	11
PDB_00553	mir-TAR links to Rfam database...	0.00	0.00	0.00	0	465	0	0	0	0	11
PDB_00741	Entero_5_CRE links to Rfam database...	0.00	0.00	0.00	0	703	0	0	0	0	17
PDB_00810	s2m links to Rfam database...	0.43	0.35	0.55	6	1070	6	0	5	1	11
PDB_00828	Purine links to Rfam database...	0.00	0.00	0.00	0	2485	0	0	0	0	27
PDB_00829	Purine links to Rfam database...	0.00	0.00	0.00	0	2278	0	0	0	0	24
PDB_00876	HIV_FE links to Rfam database...	0.00	0.00	0.00	0	990	0	0	0	0	20
PDB_01020	Purine links to Rfam database...	0.00	0.00	0.00	0	2278	0	0	0	0	23
PDB_01050	UnaL2 links to Rfam database...	0.78	0.62	1.00	8	622	2	0	0	2	5
PDB_01073	SAM links to Rfam database...	0.00	0.00	0.00	0	4371	0	0	0	0	34
PDB_01114	TPP links to Rfam database...	0.00	0.00	0.00	0	2850	0	0	0	0	27
PDB_01152	HIV_FS2 links to Rfam database...	0.81	0.79	0.85	11	548	2	0	2	0	3
PDB_01236	ykoK links to Rfam database...	0.00	0.00	0.00	0	11628	0	0	0	0	54
RFA_00389	Hammerhead_3 links to Rfam database...	0.00	0.00	0.00	0	1431	0	0	0	0	15
RFA_00390	Hammerhead_3 links to Rfam database...	0.00	0.00	0.00	0	1431	0	0	0	0	15
RFA_00391	Hammerhead_3 links to Rfam database...	0.00	0.00	0.00	0	1431	0	0	0	0	15
RFA_00396	Hammerhead_3 links to Rfam database...	0.00	0.00	0.00	0	1431	0	0	0	0	15
RFA_00402	Hammerhead_3 links to Rfam database...	0.00	0.00	0.00	0	1431	0	0	0	0	15
RFA_00409	Hammerhead_3 links to Rfam database...	0.00	0.00	0.00	0	1431	0	0	0	0	15
RFA_00416	Hammerhead_3 links to Rfam database...	0.00	0.00	0.00	0	1485	0	0	0	0	15
RFA_00433	Hammerhead_3 links to Rfam database...	0.00	0.00	0.00	0	1431	0	0	0	0	15
RFA_00434	Hammerhead_3 links to Rfam database...	0.00	0.00	0.00	0	1431	0	0	0	0	15
RFA_00436	Hammerhead_3 links to Rfam database...	0.00	0.00	0.00	0	1431	0	0	0	0	15
RFA_00440	Hammerhead_3 links to Rfam database...	0.00	0.00	0.00	0	1485	0	0	0	0	15
RFA_00442	Hammerhead_3 links to Rfam database...	0.00	0.00	0.00	0	1431	0	0	0	0	15
RFA_00444	Hammerhead_3 links to Rfam database...	0.00	0.00	0.00	0	1540	0	0	0	0	15
RFA_00583	Y_RNA links to Rfam database...	0.00	0.00	0.00	0	4950	0	0	0	0	15
RFA_00584	Y_RNA links to Rfam database...	0.00	0.00	0.00	0	2926	0	0	0	0	15
RFA_00585	Y_RNA links to Rfam database...	0.00	0.00	0.00	0	4851	0	0	0	0	15
RFA_00586	Y_RNA links to Rfam database...	0.00	0.00	0.00	0	3916	0	0	0	0	15
RFA_00587	Y_RNA links to Rfam database...	0.00	0.00	0.00	0	4851	0	0	0	0	15
RFA_00588	Y_RNA links to Rfam database...	0.00	0.00	0.00	0	4560	0	0	0	0	15
RFA_00589	Y_RNA links to Rfam database...	0.00	0.00	0.00	0	4371	0	0	0	0	15
RFA_00594	Y_RNA links to Rfam database...	0.00	0.00	0.00	0	2775	0	0	0	0	15
RFA_00596	Y_RNA links to Rfam database...	0.00	0.00	0.00	0	5995	0	0	0	0	15
RFA_00599	Telomerase-vert links to Rfam database...	0.00	0.00	0.00	0	101475	0	0	0	0	111
RFA_00601	Telomerase-vert links to Rfam database...	0.00	0.00	0.00	0	99235	0	0	0	0	114
RFA_00602	Telomerase-vert links to Rfam database...	0.00	0.00	0.00	0	101475	0	0	0	0	116
RFA_00658	Hammerhead_1 links to Rfam database...	0.56	0.43	0.75	6	1120	3	0	2	1	8
RFA_00664	Hammerhead_1 links to Rfam database...	0.27	0.07	1.00	1	989	0	0	0	0	13
RFA_00667	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	988	2	0	2	0	14
RFA_00668	Hammerhead_1 links to Rfam database...	0.50	0.36	0.71	5	983	3	0	2	1	9
RFA_00672	Hammerhead_1 links to Rfam database...	0.28	0.08	1.00	1	902	0	0	0	0	12
RFA_00673	Hammerhead_1 links to Rfam database...	0.46	0.21	1.00	3	1125	0	0	0	0	11
RFA_00674	Hammerhead_1 links to Rfam database...	0.53	0.29	1.00	4	1124	0	0	0	0	10
RFA_00675	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	989	1	0	1	0	14
RFA_00677	Hammerhead_1 links to Rfam database...	0.46	0.21	1.00	3	987	0	0	0	0	11
RFA_00678	Hammerhead_1 links to Rfam database...	0.43	0.29	0.67	4	940	2	0	2	0	10
RFA_00680	Hammerhead_1 links to Rfam database...	0.65	0.43	1.00	6	1122	0	0	0	0	8
RFA_00704	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	988	2	0	2	0	14
RFA_00707	Hammerhead_1 links to Rfam database...	0.50	0.36	0.71	5	1028	3	0	2	1	9
RFA_00715	Hammerhead_1 links to Rfam database...	0.35	0.21	0.60	3	941	2	0	2	0	11
RFA_00717	Hammerhead_1 links to Rfam database...	0.62	0.50	0.78	7	894	2	0	2	0	7
RFA_00730	s2m links to Rfam database...	0.91	0.83	1.00	10	893	2	0	0	2	2
RFA_00731	s2m links to Rfam database...	0.91	0.83	1.00	10	893	2	0	0	2	2
RFA_00733	s2m links to Rfam database...	0.91	0.83	1.00	10	893	2	0	0	2	2
RFA_00734	s2m links to Rfam database...	0.91	0.83	1.00	10	893	2	0	0	2	2
RFA_00736	s2m links to Rfam database...	0.91	0.83	1.00	10	893	2	0	0	2	2
RFA_00737	s2m links to Rfam database...	0.91	0.83	1.00	10	893	2	0	0	2	2
RFA_00745	s2m links to Rfam database...	0.91	0.83	1.00	10	936	2	0	0	2	2
RFA_00749	s2m links to Rfam database...	0.91	0.83	1.00	10	893	2	0	0	2	2
RFA_00758	s2m links to Rfam database...	0.91	0.83	1.00	10	893	2	0	0	2	2
RFA_00762	s2m links to Rfam database...	0.91	0.83	1.00	10	893	2	0	0	2	2
RFA_00763	s2m links to Rfam database...	0.91	0.83	1.00	10	893	2	0	0	2	2
RFA_00764	s2m links to Rfam database...	0.91	0.83	1.00	10	893	2	0	0	2	2
RFA_00765	s2m links to Rfam database...	0.91	0.83	1.00	10	893	2	0	0	2	2
RFA_00786	Gammaretro_CES links to Rfam database...	0.73	0.75	0.71	24	5016	10	2	8	0	8
RFA_00791	Gammaretro_CES links to Rfam database...	0.64	0.66	0.64	21	5118	12	2	10	0	11
RFA_00792	Gammaretro_CES links to Rfam database...	0.92	0.94	0.91	30	5017	3	2	1	0	2
RFA_00801	Gammaretro_CES links to Rfam database...	0.40	0.41	0.39	13	5017	20	2	18	0	19
SPR_00064	tRNA links to Rfam database...	0.00	0.00	0.00	0	2850	0	0	0	0	21
SPR_00111	tRNA links to Rfam database...	0.00	0.00	0.00	0	2701	0	0	0	0	21
SPR_00273	tRNA links to Rfam database...	0.00	0.00	0.00	0	2850	0	0	0	0	21
SPR_00277	tRNA links to Rfam database...	0.00	0.00	0.00	0	2926	0	0	0	0	21
SPR_00314	tRNA links to Rfam database...	0.00	0.00	0.00	0	2926	0	0	0	0	21
SPR_00434	tRNA links to Rfam database...	0.00	0.00	0.00	0	2850	0	0	0	0	21
SPR_00452	tRNA links to Rfam database...	0.00	0.00	0.00	0	2850	0	0	0	0	21
SPR_00595	tRNA links to Rfam database...	0.00	0.00	0.00	0	2775	0	0	0	0	21
SPR_00721	tRNA links to Rfam database...	0.00	0.00	0.00	0	2926	0	0	0	0	21
SPR_00867	tRNA links to Rfam database...	0.00	0.00	0.00	0	2926	0	0	0	0	21
SPR_01157	tRNA links to Rfam database...	0.00	0.00	0.00	0	2775	0	0	0	0	21
SRP_00006	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	45753	0	0	0	0	101
SRP_00008	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	2926	0	0	0	0	25
SRP_00011	Plant_SRP links to Rfam database...	0.00	0.00	0.00	0	46360	0	0	0	0	104
SRP_00015	Plant_SRP links to Rfam database...	0.00	0.00	0.00	0	46360	0	0	0	0	99
SRP_00020	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	5565	0	0	0	0	33
SRP_00024	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	37675	0	0	0	0	87
SRP_00026	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	36856	0	0	0	0	88
SRP_00027	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	37128	0	0	0	0	87
SRP_00030	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	36856	0	0	0	0	88
SRP_00031	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	36315	0	0	0	0	89
SRP_00037	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	36585	0	0	0	0	87
SRP_00038	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	5050	0	0	0	0	33
SRP_00042	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	4005	0	0	0	0	25
SRP_00044	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6105	0	0	0	0	32
SRP_00046	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	4753	0	0	0	0	32
SRP_00050	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	44850	0	0	0	0	99
SRP_00051	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	5460	0	0	0	0	30
SRP_00054	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	5565	0	0	0	0	32
SRP_00057	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6328	0	0	0	0	35
SRP_00058	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	5778	0	0	0	0	34
SRP_00066	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	45451	0	0	0	0	100
SRP_00072	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6328	0	0	0	0	29
SRP_00074	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6555	0	0	0	0	29
SRP_00075	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	5565	0	0	0	0	34
SRP_00077	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6670	0	0	0	0	37
SRP_00081	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	5565	0	0	0	0	31
SRP_00084	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	5460	0	0	0	0	34
SRP_00086	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	44253	0	0	0	0	100
SRP_00088	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	34191	0	0	0	0	89
SRP_00089	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	35778	0	0	0	0	90
SRP_00090	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	35511	0	0	0	0	90
SRP_00094	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	4095	0	0	0	0	24
SRP_00095	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	4005	0	0	0	0	25
SRP_00098	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6441	0	0	0	0	37
SRP_00102	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	44551	0	0	0	0	101
SRP_00103	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	45451	0	0	0	0	102
SRP_00105	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	5565	0	0	0	0	34
SRP_00107	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	3655	0	0	0	0	19
SRP_00121	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	4278	0	0	0	0	25
SRP_00128	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6786	0	0	0	0	36
SRP_00132	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	4851	0	0	0	0	29
SRP_00134	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	5995	0	0	0	0	29
SRP_00141	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6328	0	0	0	0	41
SRP_00152	Plant_SRP links to Rfam database...	0.00	0.00	0.00	0	45753	0	0	0	0	103
SRP_00161	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	2850	0	0	0	0	22
SRP_00162	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	2926	0	0	0	0	23
SRP_00163	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	3486	0	0	0	0	26
SRP_00164	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6903	0	0	0	0	35
SRP_00170	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	4095	0	0	0	0	25
SRP_00171	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	45451	0	0	0	0	88
SRP_00173	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	38226	0	0	0	0	90
SRP_00174	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	38781	0	0	0	0	86
SRP_00178	Plant_SRP links to Rfam database...	0.00	0.00	0.00	0	45753	0	0	0	0	102
SRP_00179	Plant_SRP links to Rfam database...	0.00	0.00	0.00	0	46056	0	0	0	0	105
SRP_00181	Plant_SRP links to Rfam database...	0.00	0.00	0.00	0	46056	0	0	0	0	102
SRP_00182	Plant_SRP links to Rfam database...	0.00	0.00	0.00	0	46056	0	0	0	0	101
SRP_00184	Plant_SRP links to Rfam database...	0.00	0.00	0.00	0	46056	0	0	0	0	100
SRP_00188	Plant_SRP links to Rfam database...	0.00	0.00	0.00	0	31125	0	0	0	0	79
SRP_00194	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	3240	0	0	0	0	21
SRP_00200	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6903	0	0	0	0	36
SRP_00209	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	4656	0	0	0	0	27
SRP_00213	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	4186	0	0	0	0	25
SRP_00215	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	3240	0	0	0	0	25
SRP_00227	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	5151	0	0	0	0	31
SRP_00228	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	45451	0	0	0	0	95
SRP_00231	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	5460	0	0	0	0	34
SRP_00233	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	5151	0	0	0	0	33
SRP_00234	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	36315	0	0	0	0	86
SRP_00243	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	5151	0	0	0	0	31
SRP_00244	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6903	0	0	0	0	39
SRP_00250	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6786	0	0	0	0	36
SRP_00251	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	7021	0	0	0	0	36
SRP_00266	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	4656	0	0	0	0	29
SRP_00268	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	4186	0	0	0	0	27
SRP_00269	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	5050	0	0	0	0	33
SRP_00270	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	4656	0	0	0	0	31
SRP_00271	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	3240	0	0	0	0	24
SRP_00273	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6786	0	0	0	0	40
SRP_00274	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6903	0	0	0	0	38
SRP_00295	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6903	0	0	0	0	38
SRP_00303	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6670	0	0	0	0	32
SRP_00308	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	36315	0	0	0	0	88
SRP_00310	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	2926	0	0	0	0	23
SRP_00312	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	4186	0	0	0	0	27
SRP_00315	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	2926	0	0	0	0	23
SRP_00317	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	45150	0	0	0	0	98
SRP_00318	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	3003	0	0	0	0	23
SRP_00325	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	4371	0	0	0	0	33
SRP_00326	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	5050	0	0	0	0	31
SRP_00333	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	5151	0	0	0	0	34
SRP_00335	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	35245	0	0	0	0	39
SRP_00337	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	35511	0	0	0	0	91
SRP_00338	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	5460	0	0	0	0	36
SRP_00341	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	4753	0	0	0	0	31
SRP_00342	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	4005	0	0	0	0	25
SRP_00347	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	46665	0	0	0	0	96
SRP_00350	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	3916	0	0	0	0	27
SRP_00356	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	5050	0	0	0	0	30
SRP_00357	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	5356	0	0	0	0	36
SRP_00358	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6328	0	0	0	0	35
SRP_00367	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6786	0	0	0	0	35
SRP_00368	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	43956	0	0	0	0	98
SRP_00369	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	5778	0	0	0	0	35
SRP_00383	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	3240	0	0	0	0	24

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Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.

Table of contents:

Overview

Performance plots

Performance of Carnac(20) - scored higher in this pairwise comparison

1. Total counts & total scores for Carnac(20)

2. Individual counts for Carnac(20) [ download as .csv ]

Performance of Mastr(seed) - scored lower in this pairwise comparison

1. Total counts & total scores for Mastr(seed)

2. Individual counts for Mastr(seed) [ download as .csv ]