CompaRNA - on-line benchmarks of RNA structure prediction methods

Laboratory of Structural Bioinformatics @ Adam Mickiewicz University in Poznan

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Overview

Metric	Carnac(20)		MaxExpect
MCC	0.518	>	0.512
Average MCC ± 95% Confidence Intervals	0.498 ± 0.023	<	0.633 ± 0.019
Sensitivity	0.301	<	0.499
Positive Predictive Value	0.892	>	0.527
Total TP	21119	<	35034
Total TN	119818013	>	119775158
Total FP	4012	<	35784
Total FP CONTRA	289	<	4534
Total FP INCONS	2262	<	26957
Total FP COMP	1461	<	4293
Total FN	49115	>	35200
P-value	8.1815824276e-08

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Performance plots

Comparison of performance of Carnac(20) and MaxExpect. Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data (individual counts for Carnac(20) and MaxExpect).
Average Matthews Correlation Coefficients (MCC) with 95% confidence intervals (CIs) were plotted for different RNA families, for which at least 3 members were present in the benchmarking dataset. 'n' denotes the number of MCCs used to calculate the average and CI. See tables below for raw data (individual counts for Carnac(20) and MaxExpect).
Comparison of average Matthews Correlation Coefficients (MCCs) for Carnac(20) and MaxExpect. The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data (individual counts for Carnac(20) and MaxExpect).

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Performance of Carnac(20) - scored higher in this pairwise comparison

1. Total counts & total scores for Carnac(20)

Total Base Pair Counts
Total TP	21119
Total TN	119818013
Total FP	4012
Total FP CONTRA	289
Total FP INCONS	2262
Total FP COMP	1461
Total FN	49115

Total Scores
MCC	0.518
Average MCC ± 95% Confidence Intervals	0.498 ± 0.023
Sensitivity	0.301
Positive Predictive Value	0.892
Nr of predictions	642

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2. Individual counts for Carnac(20) [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00004	RNaseP_bact_a links to Rfam database...	0.51	0.26	1.00	25	47870	0	0	0	0	72
ASE_00005	RNaseP_bact_a links to Rfam database...	0.45	0.21	0.96	25	57944	1	1	0	0	92
ASE_00006	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	47586	0	0	0	0	93
ASE_00007	RNaseP_bact_a links to Rfam database...	0.40	0.17	0.95	19	59665	1	0	1	0	91
ASE_00012	RNaseP_bact_a links to Rfam database...	0.60	0.47	0.77	58	73845	21	1	16	4	65
ASE_00018	RNaseP_bact_a links to Rfam database...	0.53	0.33	0.86	44	80550	8	1	6	1	90
ASE_00020	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	73920	0	0	0	0	126
ASE_00021	RNaseP_bact_a links to Rfam database...	0.47	0.33	0.69	52	104121	28	1	22	5	108
ASE_00022	RNaseP_bact_b links to Rfam database...	0.54	0.33	0.87	41	82981	7	0	6	1	83
ASE_00028	RNaseP_bact_b links to Rfam database...	0.45	0.20	1.00	25	84641	0	0	0	0	101
ASE_00035	RNaseP_bact_a links to Rfam database...	0.50	0.31	0.80	37	70454	12	1	8	3	81
ASE_00037	RNaseP_bact_a links to Rfam database...	0.27	0.07	1.00	8	59332	0	0	0	0	102
ASE_00038	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	53628	0	0	0	0	101
ASE_00040	RNaseP_bact_a links to Rfam database...	0.42	0.17	1.00	23	78980	4	0	0	4	110
ASE_00041	RNaseP_bact_a links to Rfam database...	0.40	0.19	0.84	21	57605	4	0	4	0	87
ASE_00042	RNaseP_bact_a links to Rfam database...	0.25	0.06	1.00	9	90091	0	0	0	0	136
ASE_00044	RNaseP_bact_a links to Rfam database...	0.42	0.20	0.88	21	54591	7	0	3	4	84
ASE_00045	RNaseP_bact_b links to Rfam database...	0.37	0.14	1.00	11	47267	0	0	0	0	69
ASE_00064	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	45451	0	0	0	0	89
ASE_00068	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	37675	0	0	0	0	85
ASE_00074	RNaseP_bact_a links to Rfam database...	0.45	0.21	0.96	25	67870	1	1	0	0	94
ASE_00075	RNaseP_bact_a links to Rfam database...	0.57	0.36	0.89	59	108745	11	1	6	4	103
ASE_00077	RNaseP_bact_a links to Rfam database...	0.34	0.13	0.92	11	45138	1	0	1	0	75
ASE_00078	RNaseP_bact_a links to Rfam database...	0.50	0.25	1.00	21	43050	1	0	0	1	62
ASE_00080	RNaseP_bact_a links to Rfam database...	0.10	0.03	0.31	4	71618	9	0	9	0	119
ASE_00081	RNaseP_bact_a links to Rfam database...	0.15	0.05	0.45	5	49759	7	0	6	1	92
ASE_00082	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	70500	0	0	0	0	116
ASE_00083	RNaseP_bact_a links to Rfam database...	0.29	0.08	1.00	9	62472	0	0	0	0	101
ASE_00084	RNaseP_bact_a links to Rfam database...	0.40	0.16	1.00	16	53612	1	0	0	1	83
ASE_00087	RNaseP_bact_a links to Rfam database...	0.19	0.03	1.00	5	88405	1	0	0	1	139
ASE_00090	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	55611	0	0	0	0	101
ASE_00092	RNaseP_bact_a links to Rfam database...	0.39	0.17	0.90	19	63525	3	0	2	1	94
ASE_00099	RNaseP_bact_a links to Rfam database...	0.45	0.21	0.96	25	64594	1	1	0	0	95
ASE_00104	RNaseP_bact_a links to Rfam database...	0.42	0.19	0.92	23	64236	2	1	1	0	96
ASE_00105	RNaseP_bact_a links to Rfam database...	0.36	0.20	0.67	22	64228	12	0	11	1	89
ASE_00107	RNaseP_bact_a links to Rfam database...	0.54	0.35	0.83	44	73100	10	1	8	1	83
ASE_00114	RNaseP_bact_b links to Rfam database...	0.21	0.10	0.44	8	45433	10	0	10	0	69
ASE_00115	RNaseP_bact_a links to Rfam database...	0.19	0.05	0.71	5	54608	3	0	2	1	96
ASE_00118	RNaseP_bact_a links to Rfam database...	0.33	0.11	1.00	11	60715	1	0	0	1	91
ASE_00119	RNaseP_bact_a links to Rfam database...	0.36	0.13	1.00	14	62821	0	0	0	0	94
ASE_00123	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	38503	0	0	0	0	85
ASE_00125	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	39340	0	0	0	0	88
ASE_00126	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	40470	0	0	0	0	82
ASE_00128	RNaseP_bact_a links to Rfam database...	0.26	0.07	1.00	7	53294	0	0	0	0	93
ASE_00129	RNaseP_bact_a links to Rfam database...	0.30	0.11	0.86	12	62821	2	0	2	0	99
ASE_00131	RNaseP_bact_a links to Rfam database...	0.31	0.09	1.00	8	39332	0	0	0	0	77
ASE_00134	RNaseP_bact_a links to Rfam database...	0.25	0.06	1.00	6	50397	0	0	0	0	89
ASE_00135	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	63190	0	0	0	0	109
ASE_00136	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	48205	0	0	0	0	92
ASE_00137	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	48516	0	0	0	0	98
ASE_00138	RNaseP_bact_a links to Rfam database...	0.22	0.05	1.00	4	40466	0	0	0	0	77
ASE_00140	RNaseP_bact_a links to Rfam database...	0.35	0.14	0.86	18	70855	3	0	3	0	107
ASE_00142	RNaseP_bact_a links to Rfam database...	0.41	0.17	0.95	21	67139	1	1	0	0	101
ASE_00146	RNaseP_bact_a links to Rfam database...	0.40	0.18	0.92	22	70852	2	0	2	0	102
ASE_00153	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	57626	4	1	3	0	73
ASE_00161	RNaseP_bact_b links to Rfam database...	0.61	0.41	0.90	36	53588	4	0	4	0	51
ASE_00163	RNaseP_bact_a links to Rfam database...	0.17	0.04	0.67	4	53295	2	0	2	0	89
ASE_00165	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	52975	0	0	0	0	101
ASE_00170	RNaseP_bact_a links to Rfam database...	0.52	0.27	1.00	25	48803	1	0	0	1	68
ASE_00171	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	48512	4	0	4	0	94
ASE_00172	RNaseP_bact_a links to Rfam database...	0.27	0.08	1.00	8	58988	0	0	0	0	98
ASE_00174	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	61075	0	0	0	0	109
ASE_00175	RNaseP_bact_a links to Rfam database...	0.20	0.05	0.83	5	60025	2	0	1	1	102
ASE_00179	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	44253	0	0	0	0	84
ASE_00180	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	51360	0	0	0	0	100
ASE_00181	RNaseP_bact_a links to Rfam database...	0.22	0.05	1.00	5	57625	0	0	0	0	101
ASE_00182	RNaseP_bact_a links to Rfam database...	0.19	0.04	0.86	6	84248	1	0	1	0	130
ASE_00183	RNaseP_bact_a links to Rfam database...	0.34	0.14	0.80	16	61405	4	0	4	0	97
ASE_00184	RNaseP_bact_a links to Rfam database...	0.33	0.11	1.00	11	54604	1	0	0	1	91
ASE_00185	RNaseP_bact_a links to Rfam database...	0.37	0.14	1.00	18	73518	0	0	0	0	110
ASE_00186	RNaseP_bact_a links to Rfam database...	0.45	0.22	0.94	29	78972	7	1	1	5	103
ASE_00190	RNaseP_bact_b links to Rfam database...	0.29	0.11	0.77	10	45438	6	0	3	3	80
ASE_00197	RNaseP_bact_a links to Rfam database...	0.33	0.12	0.94	17	89235	5	1	0	4	128
ASE_00198	RNaseP_bact_a links to Rfam database...	0.16	0.04	0.67	4	52644	2	0	2	0	98
ASE_00203	RNaseP_bact_a links to Rfam database...	0.35	0.13	1.00	12	46653	0	0	0	0	84
ASE_00212	RNaseP_bact_a links to Rfam database...	0.45	0.24	0.85	35	93920	11	1	5	5	113
ASE_00214	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	56280	0	0	0	0	103
ASE_00215	RNaseP_bact_a links to Rfam database...	0.19	0.07	0.54	7	48503	6	0	6	0	92
ASE_00216	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	39340	0	0	0	0	82
ASE_00217	RNaseP_bact_a links to Rfam database...	0.42	0.19	0.94	17	40452	1	1	0	0	73
ASE_00221	RNaseP_bact_a links to Rfam database...	0.36	0.15	0.89	17	64601	2	0	2	0	100
ASE_00228	RNaseP_bact_a links to Rfam database...	0.41	0.19	0.89	16	46953	3	0	2	1	70
ASE_00229	RNaseP_bact_a links to Rfam database...	0.28	0.08	1.00	7	42479	0	0	0	0	80
ASE_00231	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	47895	0	0	0	0	96
ASE_00232	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	38503	0	0	0	0	84
ASE_00234	RNaseP_bact_a links to Rfam database...	0.38	0.18	0.82	23	75438	6	0	5	1	106
ASE_00238	RNaseP_bact_a links to Rfam database...	0.18	0.04	0.71	5	64254	2	0	2	0	109
ASE_00241	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	43956	0	0	0	0	87
ASE_00242	RNaseP_bact_a links to Rfam database...	0.44	0.21	0.96	23	61051	1	0	1	0	89
ASE_00248	RNaseP_bact_a links to Rfam database...	0.72	0.55	0.94	63	62414	5	0	4	1	51
ASE_00254	RNaseP_bact_a links to Rfam database...	0.54	0.30	0.96	25	36830	1	0	1	0	57
ASE_00255	RNaseP_bact_a links to Rfam database...	0.67	0.55	0.84	71	74606	16	1	13	2	59
ASE_00257	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	51040	0	0	0	0	97
ASE_00263	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	70500	0	0	0	0	120
ASE_00267	RNaseP_bact_a links to Rfam database...	0.46	0.22	1.00	19	45131	1	0	0	1	69
ASE_00270	RNaseP_bact_a links to Rfam database...	0.30	0.10	0.87	13	72375	2	0	2	0	115
ASE_00274	RNaseP_bact_a links to Rfam database...	0.18	0.04	0.80	4	55606	1	0	1	0	99
ASE_00277	RNaseP_bact_a links to Rfam database...	0.27	0.10	0.75	9	48193	3	0	3	0	82
ASE_00279	RNaseP_bact_a links to Rfam database...	0.24	0.06	1.00	6	53295	0	0	0	0	95
ASE_00280	RNaseP_bact_a links to Rfam database...	0.40	0.20	0.80	20	51978	5	0	5	0	78
ASE_00281	RNaseP_bact_a links to Rfam database...	0.24	0.06	1.00	5	44546	1	0	0	1	83
ASE_00282	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	77815	0	0	0	0	127
ASE_00283	RNaseP_bact_a links to Rfam database...	0.18	0.05	0.71	5	61769	3	0	2	1	102
ASE_00284	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	58311	0	0	0	0	108
ASE_00285	RNaseP_bact_a links to Rfam database...	0.50	0.27	0.94	33	68971	3	0	2	1	89
ASE_00286	RNaseP_bact_a links to Rfam database...	0.19	0.04	0.80	4	46660	1	0	1	0	88
ASE_00287	RNaseP_bact_a links to Rfam database...	0.18	0.04	0.80	4	54941	1	0	1	0	99
ASE_00292	RNaseP_bact_a links to Rfam database...	0.53	0.32	0.88	44	81760	7	1	5	1	94
ASE_00294	RNaseP_bact_a links to Rfam database...	0.47	0.22	0.97	38	114442	1	1	0	0	133
ASE_00296	RNaseP_bact_a links to Rfam database...	0.42	0.20	0.88	29	91773	5	1	3	1	116
ASE_00297	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	52975	0	0	0	0	98
ASE_00298	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	67528	0	0	0	0	113
ASE_00305	RNaseP_bact_b links to Rfam database...	0.75	0.58	0.98	49	54565	2	0	1	1	36
ASE_00318	RNaseP_bact_b links to Rfam database...	0.55	0.32	0.95	38	80160	4	0	2	2	80
ASE_00321	RNaseP_bact_b links to Rfam database...	0.71	0.51	0.98	45	54569	4	0	1	3	43
ASE_00328	RNaseP_bact_b links to Rfam database...	0.73	0.55	0.97	62	72707	8	0	2	6	50
ASE_00332	RNaseP_bact_a links to Rfam database...	0.49	0.25	0.95	35	81773	3	0	2	1	103
ASE_00335	RNaseP_bact_b links to Rfam database...	0.65	0.46	0.93	53	75409	9	0	4	5	63
ASE_00340	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46056	3	0	0	3	85
ASE_00342	RNaseP_bact_a links to Rfam database...	0.45	0.21	0.96	24	62456	1	1	0	0	91
ASE_00353	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	57970	0	0	0	0	107
ASE_00361	RNaseP_bact_a links to Rfam database...	0.18	0.03	1.00	4	75462	0	0	0	0	123
ASE_00362	RNaseP_bact_a links to Rfam database...	0.23	0.05	1.00	5	48200	1	0	0	1	86
ASE_00363	RNaseP_bact_a links to Rfam database...	0.33	0.12	0.92	11	51348	2	0	1	1	83
ASE_00364	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	54285	0	0	0	0	105
ASE_00366	RNaseP_bact_a links to Rfam database...	0.23	0.08	0.67	8	58641	4	0	4	0	90
ASE_00367	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	43071	0	0	0	0	86
ASE_00369	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	55945	0	0	0	0	107
ASE_00370	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	41905	0	0	0	0	84
ASE_00372	RNaseP_bact_a links to Rfam database...	0.18	0.04	0.80	4	51998	1	0	1	0	96
ASE_00374	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	44850	0	0	0	0	88
ASE_00376	RNaseP_bact_a links to Rfam database...	0.16	0.04	0.67	4	56947	2	0	2	0	101
ASE_00377	RNaseP_bact_a links to Rfam database...	0.24	0.07	0.80	8	57620	3	0	2	1	99
ASE_00379	RNaseP_bact_a links to Rfam database...	0.24	0.06	1.00	5	46051	0	0	0	0	84
ASE_00382	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	41905	0	0	0	0	84
ASE_00383	RNaseP_bact_a links to Rfam database...	0.19	0.04	1.00	4	54611	0	0	0	0	101
ASE_00384	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	48516	0	0	0	0	92
ASE_00386	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	50403	0	0	0	0	96
ASE_00387	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	55945	0	0	0	0	104
ASE_00388	RNaseP_bact_a links to Rfam database...	0.44	0.20	0.95	18	45734	2	0	1	1	71
ASE_00390	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	42195	0	0	0	0	85
ASE_00393	RNaseP_bact_a links to Rfam database...	0.39	0.16	0.94	15	47879	1	0	1	0	78
ASE_00394	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46971	0	0	0	0	93
ASE_00395	RNaseP_bact_a links to Rfam database...	0.24	0.06	1.00	5	41611	1	0	0	1	79
ASE_00396	RNaseP_bact_a links to Rfam database...	0.36	0.14	0.92	12	41603	1	0	1	0	71
ASE_00397	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	54615	0	0	0	0	105
ASE_00398	RNaseP_bact_a links to Rfam database...	0.43	0.18	1.00	19	55926	1	0	0	1	85
ASE_00400	RNaseP_bact_a links to Rfam database...	0.54	0.31	0.94	33	57935	2	0	2	0	73
ASE_00401	RNaseP_bact_a links to Rfam database...	0.15	0.03	0.67	4	77022	2	0	2	0	122
ASE_00402	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	42486	0	0	0	0	85
ASE_00403	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	55945	0	0	0	0	107
ASE_00404	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	43071	0	0	0	0	85
ASE_00406	RNaseP_bact_a links to Rfam database...	0.44	0.23	0.85	22	48802	7	0	4	3	72
ASE_00411	RNaseP_bact_a links to Rfam database...	0.41	0.22	0.74	20	49428	8	0	7	1	69
ASE_00412	RNaseP_bact_a links to Rfam database...	0.19	0.08	0.47	8	58294	10	0	9	1	97
ASE_00413	RNaseP_bact_a links to Rfam database...	0.33	0.12	0.91	10	44540	1	0	1	0	71
ASE_00415	RNaseP_bact_a links to Rfam database...	0.16	0.04	0.67	4	54940	2	0	2	0	99
ASE_00416	RNaseP_bact_a links to Rfam database...	0.40	0.18	0.88	23	77395	6	1	2	3	104
ASE_00419	RNaseP_bact_a links to Rfam database...	0.39	0.16	1.00	16	54930	1	0	0	1	87
ASE_00422	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46971	0	0	0	0	94
ASE_00423	RNaseP_bact_a links to Rfam database...	0.57	0.37	0.89	40	56908	6	1	4	1	69
ASE_00427	RNaseP_nuc links to Rfam database...	0.31	0.15	0.64	7	40744	4	0	4	0	39
ASE_00428	RNaseP_bact_a links to Rfam database...	0.43	0.19	0.96	24	76611	2	1	0	1	101
ASE_00430	RNaseP_bact_a links to Rfam database...	0.49	0.24	1.00	23	46948	0	0	0	0	74
ASE_00437	RNaseP_bact_a links to Rfam database...	0.22	0.10	0.52	13	79376	12	1	11	0	122
ASE_00441	RNaseP_bact_a links to Rfam database...	0.41	0.17	1.00	19	64242	0	0	0	0	93
ASE_00448	RNaseP_bact_a links to Rfam database...	0.55	0.33	0.93	37	64221	8	1	2	5	75
ASE_00451	RNaseP_bact_a links to Rfam database...	0.47	0.24	0.91	30	70843	3	1	2	0	95
CRW_00024	SSU_rRNA_archaea links to Rfam database...	0.74	0.59	0.94	270	1085313	35	5	13	17	188
CRW_00034	SSU_rRNA_bacteria links to Rfam database...	0.56	0.35	0.90	166	1142131	28	4	15	9	308
CRW_00048	SSU_rRNA_bacteria links to Rfam database...	0.62	0.43	0.91	202	1170992	29	3	18	8	268
CRW_00054	SSU_rRNA_bacteria links to Rfam database...	0.62	0.42	0.91	191	1107607	23	4	14	5	265
CRW_00059	SSU_rRNA_bacteria links to Rfam database...	0.64	0.43	0.95	204	1172532	17	3	7	7	269
CRW_00061	SSU_rRNA_bacteria links to Rfam database...	0.63	0.42	0.94	199	1181742	19	2	10	7	277
CRW_00068	SSU_rRNA_bacteria links to Rfam database...	0.69	0.51	0.94	234	1109056	28	2	13	13	223
CRW_00096	SSU_rRNA_bacteria links to Rfam database...	0.62	0.43	0.92	198	1178664	29	0	18	11	267
CRW_00140	SSU_rRNA_bacteria links to Rfam database...	0.71	0.53	0.95	246	1136018	21	2	12	7	217
CRW_00141	SSU_rRNA_bacteria links to Rfam database...	0.64	0.43	0.93	207	1201802	26	4	12	10	269
CRW_00150	SSU_rRNA_bacteria links to Rfam database...	0.66	0.46	0.95	216	1152694	16	3	8	5	250
CRW_00152	SSU_rRNA_bacteria links to Rfam database...	0.69	0.52	0.92	244	1180151	26	4	17	5	227
CRW_00166	SSU_rRNA_bacteria links to Rfam database...	0.64	0.44	0.93	207	1190974	24	0	15	9	261
CRW_00173	SSU_rRNA_bacteria links to Rfam database...	0.56	0.36	0.89	158	1082478	26	2	18	6	287
CRW_00177	SSU_rRNA_bacteria links to Rfam database...	0.52	0.32	0.87	149	1178708	29	3	20	6	324
CRW_00196	SSU_rRNA_bacteria links to Rfam database...	0.64	0.43	0.96	204	1208022	12	2	7	3	271
CRW_00230	SSU_rRNA_bacteria links to Rfam database...	0.66	0.47	0.93	227	1198681	28	3	15	10	251
CRW_00245	SSU_rRNA_bacteria links to Rfam database...	0.65	0.45	0.93	205	1106108	20	3	12	5	248
CRW_00248	SSU_rRNA_bacteria links to Rfam database...	0.56	0.35	0.91	168	1218956	27	4	13	10	316
CRW_00250	SSU_rRNA_bacteria links to Rfam database...	0.68	0.50	0.91	241	1198660	33	4	21	8	237
CRW_00256	SSU_rRNA_bacteria links to Rfam database...	0.64	0.43	0.97	200	1192533	11	3	4	4	268
CRW_00270	SSU_rRNA_bacteria links to Rfam database...	0.66	0.47	0.93	212	1112057	22	4	13	5	243
CRW_00271	SSU_rRNA_bacteria links to Rfam database...	0.62	0.41	0.94	191	1122548	17	3	9	5	271
CRW_00273	SSU_rRNA_bacteria links to Rfam database...	0.57	0.35	0.92	156	1085431	16	4	10	2	290
CRW_00275	SSU_rRNA_bacteria links to Rfam database...	0.60	0.37	0.95	171	1115091	13	2	7	4	286
CRW_00277	SSU_rRNA_bacteria links to Rfam database...	0.64	0.44	0.93	201	1110578	20	3	13	4	252
CRW_00278	SSU_rRNA_bacteria links to Rfam database...	0.52	0.29	0.92	130	1130115	15	4	7	4	320
CRW_00279	SSU_rRNA_bacteria links to Rfam database...	0.68	0.51	0.92	237	1180158	31	3	18	10	227
CRW_00280	SSU_rRNA_bacteria links to Rfam database...	0.66	0.46	0.96	209	1118042	12	1	8	3	244
CRW_00281	SSU_rRNA_bacteria links to Rfam database...	0.65	0.45	0.95	209	1145120	17	2	10	5	255
CRW_00284	SSU_rRNA_bacteria links to Rfam database...	0.53	0.33	0.87	150	1131587	27	3	20	4	306
CRW_00285	SSU_rRNA_bacteria links to Rfam database...	0.62	0.41	0.93	188	1118058	18	2	12	4	270
CRW_00289	SSU_rRNA_bacteria links to Rfam database...	0.58	0.41	0.84	194	1189422	41	5	32	4	282
CRW_00298	SSU_rRNA_eukarya links to Rfam database...	0.41	0.19	0.86	95	1620790	37	0	15	22	399
CRW_00301	SSU_rRNA_eukarya links to Rfam database...	0.46	0.25	0.83	131	1762345	56	0	27	29	388
CRW_00306	SSU_rRNA_eukarya links to Rfam database...	0.55	0.32	0.95	146	1445697	38	0	7	31	316
CRW_00310	SSU_rRNA_eukarya links to Rfam database...	0.42	0.22	0.81	116	1805806	46	5	23	18	405
CRW_00326	SSU_rRNA_eukarya links to Rfam database...	0.45	0.23	0.92	113	1627987	32	1	9	22	389
CRW_00330	SSU_rRNA_eukarya links to Rfam database...	0.34	0.17	0.67	89	1988883	69	3	40	26	428
CRW_00332	SSU_rRNA_eukarya links to Rfam database...	0.39	0.20	0.76	97	1769893	46	1	30	15	380
CRW_00333	SSU_rRNA_eukarya links to Rfam database...	0.35	0.17	0.70	88	1892359	50	4	34	12	426
CRW_00345	SSU_rRNA_eukarya links to Rfam database...	0.48	0.29	0.81	145	1586691	63	2	33	28	353
CRW_00346	SSU_rRNA_eukarya links to Rfam database...	0.47	0.28	0.79	138	1584915	66	1	36	29	363
CRW_00348	SSU_rRNA_eukarya links to Rfam database...	0.40	0.23	0.72	114	1615344	78	4	41	33	389
CRW_00358	SSU_rRNA_eukarya links to Rfam database...	0.49	0.25	0.96	129	1675231	29	0	5	24	378
CRW_00366	SSU_rRNA_eukarya links to Rfam database...	0.47	0.25	0.87	122	1579613	37	1	17	19	360
CRW_00370	SSU_rRNA_eukarya links to Rfam database...	0.47	0.27	0.84	135	1640605	54	1	25	28	371
CRW_00371	SSU_rRNA_eukarya links to Rfam database...	0.48	0.29	0.81	143	1611733	59	1	33	25	353
CRW_00372	SSU_rRNA_eukarya links to Rfam database...	0.44	0.23	0.84	117	1626166	46	2	21	23	381
CRW_00379	SSU_rRNA_eukarya links to Rfam database...	0.49	0.26	0.93	140	2126802	50	1	10	39	394
CRW_00386	SSU_rRNA_eukarya links to Rfam database...	0.30	0.13	0.71	67	1751161	53	2	26	25	448
CRW_00403	SSU_rRNA_eukarya links to Rfam database...	0.48	0.27	0.83	127	1606375	60	0	26	34	337
CRW_00411	SSU_rRNA_eukarya links to Rfam database...	0.39	0.19	0.81	94	1615387	42	0	22	20	402
CRW_00414	SSU_rRNA_eukarya links to Rfam database...	0.38	0.19	0.74	96	1666095	60	1	33	26	399
CRW_00466	SSU_rRNA_bacteria links to Rfam database...	0.62	0.42	0.91	192	1116554	28	4	15	9	266
CRW_00548	5S_rRNA links to Rfam database...	0.69	0.47	1.00	18	7363	0	0	0	0	20
CRW_00552	5S_rRNA links to Rfam database...	0.72	0.51	1.00	20	7120	1	0	0	1	19
CRW_00555	5S_rRNA links to Rfam database...	0.62	0.50	0.77	20	7600	6	0	6	0	20
CRW_00567	5S_rRNA links to Rfam database...	0.77	0.60	1.00	24	7479	2	0	0	2	16
CRW_00570	5S_rRNA links to Rfam database...	0.90	0.81	1.00	30	6873	1	0	0	1	7
CRW_00573	5S_rRNA links to Rfam database...	0.74	0.60	0.92	24	7114	2	0	2	0	16
CRW_00589	SSU_rRNA_bacteria links to Rfam database...	0.58	0.35	0.97	156	1094299	10	0	5	5	289
CRW_00590	SSU_rRNA_bacteria links to Rfam database...	0.55	0.33	0.93	148	1119597	15	1	10	4	304
CRW_00591	SSU_rRNA_bacteria links to Rfam database...	0.66	0.46	0.93	206	1098682	26	1	14	11	240
CRW_00598	SSU_rRNA_eukarya links to Rfam database...	0.42	0.20	0.85	100	1666107	41	0	18	23	391
CRW_00758	SSU_rRNA_eukarya links to Rfam database...	0.46	0.26	0.79	127	1640605	57	4	30	23	356
CRW_00759	SSU_rRNA_eukarya links to Rfam database...	0.39	0.19	0.79	93	1637028	51	3	21	27	388
CRW_00760	SSU_rRNA_eukarya links to Rfam database...	0.45	0.24	0.84	117	1638815	55	0	23	32	369
CRW_00772	SSU_rRNA_bacteria links to Rfam database...	0.48	0.30	0.77	122	945842	42	3	33	6	282
CRW_00789	SSU_rRNA_bacteria links to Rfam database...	0.61	0.43	0.88	191	1137570	34	1	24	9	256
CRW_00795	SSU_rRNA_bacteria links to Rfam database...	0.59	0.38	0.90	150	1152755	40	0	16	24	244
CRW_00849	SSU_rRNA_bacteria links to Rfam database...	0.62	0.42	0.92	196	1118046	27	3	15	9	274
CRW_00997	SSU_rRNA_bacteria links to Rfam database...	0.60	0.39	0.93	181	1136084	19	3	10	6	283
CRW_01153	SSU_rRNA_eukarya links to Rfam database...	0.44	0.25	0.76	126	1606363	56	1	38	17	377
CRW_01171	SSU_rRNA_eukarya links to Rfam database...	0.47	0.25	0.90	125	1593866	44	0	14	30	381
CRW_01300	SSU_rRNA_eukarya links to Rfam database...	0.47	0.25	0.88	128	1693575	38	0	17	21	387
CRW_01484	5S_rRNA links to Rfam database...	0.70	0.49	1.00	19	7484	0	0	0	0	20
CRW_01485	5S_rRNA links to Rfam database...	0.70	0.49	1.00	19	7484	0	0	0	0	20
CRW_01487	5S_rRNA links to Rfam database...	0.68	0.49	0.95	20	7482	1	0	1	0	21
CRW_01489	5S_rRNA links to Rfam database...	0.73	0.54	1.00	21	7482	0	0	0	0	18
CRW_01491	5S_rRNA links to Rfam database...	0.70	0.51	0.96	22	8362	1	0	1	0	21
CRW_01492	5S_rRNA links to Rfam database...	0.69	0.48	1.00	20	7606	0	0	0	0	22
CRW_01494	5S_rRNA links to Rfam database...	0.48	0.35	0.67	14	7119	8	0	7	1	26
CRW_01497	5S_rRNA links to Rfam database...	0.71	0.53	0.95	21	7118	1	0	1	0	19
CRW_01498	5S_rRNA links to Rfam database...	0.66	0.44	1.00	19	8109	0	0	0	0	24
CRW_01499	5S_rRNA links to Rfam database...	0.66	0.46	0.95	19	7981	2	0	1	1	22
CRW_01500	5S_rRNA links to Rfam database...	0.69	0.47	1.00	18	7732	0	0	0	0	20
CRW_01501	5S_rRNA links to Rfam database...	0.66	0.56	0.78	25	8483	8	0	7	1	20
CRW_01508	5S_rRNA links to Rfam database...	0.71	0.55	0.92	23	7976	2	0	2	0	19
CRW_01532	5S_rRNA links to Rfam database...	0.70	0.62	0.79	23	7111	8	0	6	2	14
CRW_01533	5S_rRNA links to Rfam database...	0.77	0.73	0.82	27	7107	8	0	6	2	10
CRW_01534	5S_rRNA links to Rfam database...	0.70	0.62	0.79	23	7111	7	0	6	1	14
CRW_01535	5S_rRNA links to Rfam database...	0.77	0.73	0.82	27	7107	8	0	6	2	10
CRW_01536	5S_rRNA links to Rfam database...	0.75	0.57	1.00	21	7000	0	0	0	0	16
CRW_01537	5S_rRNA links to Rfam database...	0.61	0.38	1.00	14	7126	2	0	0	2	23
CRW_01539	5S_rRNA links to Rfam database...	0.75	0.70	0.81	26	7108	8	0	6	2	11
CRW_01540	5S_rRNA links to Rfam database...	0.79	0.65	0.96	24	7115	3	0	1	2	13
CRW_01541	5S_rRNA links to Rfam database...	0.59	0.35	1.00	13	7127	0	0	0	0	24
CRW_01542	5S_rRNA links to Rfam database...	0.70	0.62	0.79	23	7111	8	0	6	2	14
CRW_01544	5S_rRNA links to Rfam database...	0.81	0.76	0.88	28	7108	5	0	4	1	9
CRW_01548	5S_rRNA links to Rfam database...	0.77	0.73	0.82	27	6988	7	0	6	1	10
CRW_01555	5S_rRNA links to Rfam database...	0.79	0.65	0.96	24	9020	3	0	1	2	13
CRW_01556	5S_rRNA links to Rfam database...	0.89	0.81	0.97	30	7109	2	0	1	1	7
CRW_01557	5S_rRNA links to Rfam database...	0.80	0.65	1.00	24	7116	2	0	0	2	13
CRW_01559	5S_rRNA links to Rfam database...	0.74	0.62	0.88	23	7234	6	0	3	3	14
CRW_01562	5S_rRNA links to Rfam database...	0.76	0.62	0.92	23	7115	3	0	2	1	14
CRW_01563	5S_rRNA links to Rfam database...	0.72	0.51	1.00	19	6884	0	0	0	0	18
CRW_01566	5S_rRNA links to Rfam database...	0.31	0.16	0.60	6	7130	4	0	4	0	31
CRW_01568	5S_rRNA links to Rfam database...	0.80	0.65	1.00	24	7116	1	0	0	1	13
CRW_01569	5S_rRNA links to Rfam database...	0.73	0.54	1.00	20	7120	1	0	0	1	17
CRW_01570	5S_rRNA links to Rfam database...	0.80	0.65	1.00	24	7116	3	0	0	3	13
CRW_01572	5S_rRNA links to Rfam database...	0.72	0.51	1.00	19	7002	3	0	0	3	18
CRW_01573	5S_rRNA links to Rfam database...	0.77	0.73	0.82	27	7227	8	0	6	2	10
CRW_01578	5S_rRNA links to Rfam database...	0.77	0.73	0.82	27	7107	8	0	6	2	10
CRW_01580	5S_rRNA links to Rfam database...	0.66	0.57	0.78	21	7113	8	0	6	2	16
CRW_01581	5S_rRNA links to Rfam database...	0.53	0.35	0.81	13	7124	3	0	3	0	24
CRW_01583	5S_rRNA links to Rfam database...	0.77	0.62	0.96	23	7116	2	0	1	1	14
CRW_01584	5S_rRNA links to Rfam database...	0.74	0.65	0.86	24	7112	6	0	4	2	13
CRW_01590	5S_rRNA links to Rfam database...	0.87	0.76	1.00	28	7112	1	0	0	1	9
CRW_01593	5S_rRNA links to Rfam database...	0.80	0.65	1.00	24	7116	1	0	0	1	13
CRW_01595	5S_rRNA links to Rfam database...	0.51	0.38	0.70	14	8495	7	0	6	1	23
CRW_01599	5S_rRNA links to Rfam database...	0.77	0.73	0.82	27	7107	8	0	6	2	10
CRW_01603	5S_rRNA links to Rfam database...	0.79	0.70	0.90	26	7111	4	0	3	1	11
CRW_01605	5S_rRNA links to Rfam database...	0.73	0.54	1.00	20	7120	2	0	0	2	17
CRW_01606	5S_rRNA links to Rfam database...	0.49	0.27	0.91	10	7129	2	0	1	1	27
CRW_01608	5S_rRNA links to Rfam database...	0.77	0.65	0.92	24	8359	3	0	2	1	13
CRW_01616	5S_rRNA links to Rfam database...	0.77	0.73	0.82	27	7107	8	0	6	2	10
CRW_01617	5S_rRNA links to Rfam database...	0.85	0.73	1.00	27	7113	2	0	0	2	10
CRW_01620	5S_rRNA links to Rfam database...	0.84	0.73	0.96	27	6993	2	0	1	1	10
CRW_01621	5S_rRNA links to Rfam database...	0.75	0.59	0.96	22	7117	2	0	1	1	15
CRW_01623	5S_rRNA links to Rfam database...	0.79	0.62	1.00	23	7117	1	0	0	1	14
CRW_01625	5S_rRNA links to Rfam database...	0.80	0.73	0.87	27	7109	5	0	4	1	10
PDB_00012	mir-TAR links to Rfam database...	1.00	1.00	1.00	7	399	3	0	0	3	0
PDB_00070	tRNA links to Rfam database...	0.69	0.58	0.82	14	2833	3	0	3	0	10
PDB_00213	Gammaretro_CES links to Rfam database...	0.58	0.34	1.00	14	5036	0	0	0	0	27
PDB_00229	tRNA links to Rfam database...	0.91	0.87	0.95	20	2754	1	0	1	0	3
PDB_00327	tRNA links to Rfam database...	0.55	0.30	1.00	7	3074	0	0	0	0	16
PDB_00362	tRNA links to Rfam database...	0.83	0.73	0.94	16	2833	1	0	1	0	6
PDB_00402	tRNA links to Rfam database...	0.69	0.48	1.00	11	2764	0	0	0	0	12
PDB_00431	tRNA links to Rfam database...	0.77	0.75	0.79	15	2192	8	0	4	4	5
PDB_00474	tRNA links to Rfam database...	0.86	0.74	1.00	17	2684	0	0	0	0	6
PDB_00553	mir-TAR links to Rfam database...	0.00	0.00	0.00	0	465	0	0	0	0	11
PDB_00571	tRNA links to Rfam database...	0.77	0.64	0.94	16	3304	1	1	0	0	9
PDB_00667	tRNA links to Rfam database...	0.95	0.91	1.00	20	2830	2	0	0	2	2
PDB_00703	SSU_rRNA_bacteria links to Rfam database...	0.60	0.40	0.92	196	1073633	28	3	13	12	299
PDB_00741	Entero_5_CRE links to Rfam database...	0.45	0.29	0.71	5	696	2	0	2	0	12
PDB_00810	s2m links to Rfam database...	0.64	0.41	1.00	7	1074	0	0	0	0	10
PDB_00828	Purine links to Rfam database...	0.88	0.78	1.00	21	2464	0	0	0	0	6
PDB_00829	Purine links to Rfam database...	0.86	0.75	1.00	18	2260	0	0	0	0	6
PDB_00854	SSU_rRNA_bacteria links to Rfam database...	0.62	0.41	0.95	218	1500548	29	3	9	17	317
PDB_00876	HIV_FE links to Rfam database...	0.00	0.00	0.00	0	990	0	0	0	0	20
PDB_01002	tRNA links to Rfam database...	0.95	0.90	1.00	19	2756	2	0	0	2	2
PDB_01020	Purine links to Rfam database...	0.86	0.74	1.00	17	2261	1	0	0	1	6
PDB_01050	UnaL2 links to Rfam database...	0.62	0.38	1.00	5	625	1	0	0	1	8
PDB_01053	tRNA links to Rfam database...	0.66	0.44	1.00	7	1371	0	0	0	0	9
PDB_01073	SAM links to Rfam database...	0.75	0.56	1.00	19	4352	1	0	0	1	15
PDB_01088	SSU_rRNA_bacteria links to Rfam database...	0.59	0.38	0.92	206	1471246	35	2	16	17	341
PDB_01103	SSU_rRNA_bacteria links to Rfam database...	0.62	0.40	0.96	226	1606292	20	3	7	10	336
PDB_01105	SSU_rRNA_bacteria links to Rfam database...	0.58	0.36	0.94	192	1433767	24	1	11	12	348
PDB_01114	TPP links to Rfam database...	0.38	0.15	1.00	4	2846	0	0	0	0	23
PDB_01120	SSU_rRNA_bacteria links to Rfam database...	0.62	0.41	0.93	216	1204895	30	4	13	13	311
PDB_01152	HIV_FS2 links to Rfam database...	0.88	0.79	1.00	11	550	0	0	0	0	3
PDB_01236	ykoK links to Rfam database...	0.69	0.50	0.96	27	11600	2	0	1	1	27
PDB_01273	SSU_rRNA_bacteria links to Rfam database...	0.66	0.48	0.92	234	1118007	37	4	15	18	257
RFA_00389	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00390	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00391	Hammerhead_3 links to Rfam database...	0.93	0.87	1.00	13	1418	2	0	0	2	2
RFA_00396	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	2	0	0	2	1
RFA_00402	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	0	0	0	0	0
RFA_00409	Hammerhead_3 links to Rfam database...	0.77	0.60	1.00	9	1422	1	0	0	1	6
RFA_00416	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1470	3	0	0	3	0
RFA_00433	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00434	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00436	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00440	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1470	2	0	0	2	0
RFA_00442	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00444	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1525	1	0	0	1	0
RFA_00583	Y_RNA links to Rfam database...	0.00	0.00	0.00	0	4946	5	0	4	1	15
RFA_00584	Y_RNA links to Rfam database...	0.00	0.00	0.00	0	2926	0	0	0	0	15
RFA_00585	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4836	2	0	0	2	0
RFA_00586	Y_RNA links to Rfam database...	0.00	0.00	0.00	0	3909	7	0	7	0	15
RFA_00587	Y_RNA links to Rfam database...	0.00	0.00	0.00	0	4843	9	4	4	1	15
RFA_00588	Y_RNA links to Rfam database...	0.00	0.00	0.00	0	4560	0	0	0	0	15
RFA_00589	Y_RNA links to Rfam database...	0.00	0.00	0.00	0	4371	0	0	0	0	15
RFA_00594	Y_RNA links to Rfam database...	0.73	0.53	1.00	8	2767	0	0	0	0	7
RFA_00596	Y_RNA links to Rfam database...	0.00	0.00	0.00	0	5995	0	0	0	0	15
RFA_00599	Telomerase-vert links to Rfam database...	0.00	0.00	0.00	0	101475	0	0	0	0	111
RFA_00601	Telomerase-vert links to Rfam database...	0.00	0.00	0.00	0	99235	0	0	0	0	114
RFA_00602	Telomerase-vert links to Rfam database...	0.00	0.00	0.00	0	101475	0	0	0	0	116
RFA_00658	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	1128	0	0	0	0	14
RFA_00664	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	990	0	0	0	0	14
RFA_00667	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	990	0	0	0	0	14
RFA_00668	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	990	0	0	0	0	14
RFA_00672	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	903	0	0	0	0	13
RFA_00673	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	1128	0	0	0	0	14
RFA_00674	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	1128	0	0	0	0	14
RFA_00675	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	990	0	0	0	0	14
RFA_00677	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	990	0	0	0	0	14
RFA_00678	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	946	0	0	0	0	14
RFA_00680	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	1128	0	0	0	0	14
RFA_00704	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	990	0	0	0	0	14
RFA_00707	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	1035	0	0	0	0	14
RFA_00715	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	946	0	0	0	0	14
RFA_00717	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	903	0	0	0	0	14
RFA_00730	s2m links to Rfam database...	0.64	0.42	1.00	5	898	1	0	0	1	7
RFA_00731	s2m links to Rfam database...	0.64	0.42	1.00	5	898	1	0	0	1	7
RFA_00733	s2m links to Rfam database...	0.64	0.42	1.00	5	898	1	0	0	1	7
RFA_00734	s2m links to Rfam database...	0.64	0.42	1.00	5	898	0	0	0	0	7
RFA_00736	s2m links to Rfam database...	0.64	0.42	1.00	5	898	1	0	0	1	7
RFA_00737	s2m links to Rfam database...	0.64	0.42	1.00	5	898	1	0	0	1	7
RFA_00745	s2m links to Rfam database...	0.64	0.42	1.00	5	941	1	0	0	1	7
RFA_00749	s2m links to Rfam database...	0.64	0.42	1.00	5	898	1	0	0	1	7
RFA_00758	s2m links to Rfam database...	0.00	0.00	0.00	0	903	0	0	0	0	12
RFA_00762	s2m links to Rfam database...	0.64	0.42	1.00	5	898	0	0	0	0	7
RFA_00763	s2m links to Rfam database...	0.64	0.42	1.00	5	898	1	0	0	1	7
RFA_00764	s2m links to Rfam database...	0.64	0.42	1.00	5	898	1	0	0	1	7
RFA_00765	s2m links to Rfam database...	0.64	0.42	1.00	5	898	1	0	0	1	7
RFA_00786	Gammaretro_CES links to Rfam database...	0.25	0.13	0.50	4	5042	4	1	3	0	28
RFA_00791	Gammaretro_CES links to Rfam database...	0.00	0.00	0.00	0	5151	0	0	0	0	32
RFA_00792	Gammaretro_CES links to Rfam database...	0.00	0.00	0.00	0	5046	4	1	3	0	32
RFA_00801	Gammaretro_CES links to Rfam database...	0.31	0.16	0.63	5	5042	4	0	3	1	27
SPR_00007	tRNA links to Rfam database...	0.90	0.81	1.00	17	2833	0	0	0	0	4
SPR_00009	tRNA links to Rfam database...	0.55	0.30	1.00	6	2844	0	0	0	0	14
SPR_00010	tRNA links to Rfam database...	0.85	0.76	0.94	16	2833	1	0	1	0	5
SPR_00012	tRNA links to Rfam database...	0.67	0.45	1.00	9	2841	0	0	0	0	11
SPR_00013	tRNA links to Rfam database...	0.67	0.45	1.00	9	2841	0	0	0	0	11
SPR_00016	tRNA links to Rfam database...	0.58	0.33	1.00	7	2843	0	0	0	0	14
SPR_00017	tRNA links to Rfam database...	0.72	0.52	1.00	11	2839	0	0	0	0	10
SPR_00025	tRNA links to Rfam database...	0.77	0.60	1.00	12	2914	0	0	0	0	8
SPR_00026	tRNA links to Rfam database...	0.90	0.81	1.00	17	2909	0	0	0	0	4
SPR_00027	tRNA links to Rfam database...	0.90	0.81	1.00	17	2909	0	0	0	0	4
SPR_00036	tRNA links to Rfam database...	0.77	0.60	1.00	12	2763	1	0	0	1	8
SPR_00045	tRNA links to Rfam database...	0.67	0.59	0.76	13	2833	4	0	4	0	9
SPR_00064	tRNA links to Rfam database...	0.90	0.81	1.00	17	2833	0	0	0	0	4
SPR_00065	tRNA links to Rfam database...	0.90	0.81	1.00	17	2833	0	0	0	0	4
SPR_00066	tRNA links to Rfam database...	0.90	0.81	1.00	17	2833	0	0	0	0	4
SPR_00068	tRNA links to Rfam database...	0.90	0.81	1.00	17	2833	0	0	0	0	4
SPR_00070	tRNA links to Rfam database...	0.90	0.81	1.00	17	2833	0	0	0	0	4
SPR_00074	tRNA links to Rfam database...	0.89	0.80	1.00	16	2834	1	0	0	1	4
SPR_00079	tRNA links to Rfam database...	0.48	0.37	0.64	7	2474	5	0	4	1	12
SPR_00086	tRNA links to Rfam database...	0.69	0.52	0.92	11	2838	1	0	1	0	10
SPR_00087	tRNA links to Rfam database...	0.95	0.90	1.00	18	2832	0	0	0	0	2
SPR_00088	tRNA links to Rfam database...	0.84	0.70	1.00	14	2836	0	0	0	0	6
SPR_00089	tRNA links to Rfam database...	0.84	0.70	1.00	14	2836	0	0	0	0	6
SPR_00090	tRNA links to Rfam database...	0.95	0.90	1.00	18	2832	0	0	0	0	2
SPR_00091	tRNA links to Rfam database...	0.95	0.90	1.00	18	2832	0	0	0	0	2
SPR_00095	tRNA links to Rfam database...	0.62	0.52	0.73	11	2835	4	2	2	0	10
SPR_00111	tRNA links to Rfam database...	0.90	0.81	1.00	17	2684	0	0	0	0	4
SPR_00112	tRNA links to Rfam database...	0.90	0.81	1.00	17	2684	2	0	0	2	4
SPR_00115	tRNA links to Rfam database...	0.90	0.81	1.00	17	2684	0	0	0	0	4
SPR_00117	tRNA links to Rfam database...	0.90	0.81	1.00	17	2833	2	0	0	2	4
SPR_00139	tRNA links to Rfam database...	0.90	0.81	1.00	17	2909	1	0	0	1	4
SPR_00153	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00155	tRNA links to Rfam database...	0.90	0.81	1.00	17	2909	0	0	0	0	4
SPR_00156	tRNA links to Rfam database...	0.72	0.52	1.00	11	2915	0	0	0	0	10
SPR_00176	tRNA links to Rfam database...	0.92	0.85	1.00	17	2833	0	0	0	0	3
SPR_00177	tRNA links to Rfam database...	0.95	0.95	0.95	20	2829	1	0	1	0	1
SPR_00178	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00191	tRNA links to Rfam database...	0.87	0.76	1.00	16	2834	0	0	0	0	5
SPR_00200	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00224	tRNA links to Rfam database...	0.87	0.85	0.89	17	3722	3	0	2	1	3
SPR_00271	tRNA links to Rfam database...	0.95	0.95	0.95	20	2829	1	0	1	0	1
SPR_00273	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00276	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00277	tRNA links to Rfam database...	0.72	0.52	1.00	11	2915	0	0	0	0	10
SPR_00294	tRNA links to Rfam database...	0.90	0.81	1.00	17	2833	0	0	0	0	4
SPR_00295	tRNA links to Rfam database...	0.90	0.81	1.00	17	2758	0	0	0	0	4
SPR_00314	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	2	0	0	2	0
SPR_00315	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	2	0	0	2	0
SPR_00317	tRNA links to Rfam database...	0.78	0.80	0.76	16	2905	8	1	4	3	4
SPR_00318	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	2	0	0	2	0
SPR_00321	tRNA links to Rfam database...	1.00	1.00	1.00	21	2982	0	0	0	0	0
SPR_00333	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	0	0	0	0	0
SPR_00352	tRNA links to Rfam database...	0.90	0.81	1.00	17	2909	0	0	0	0	4
SPR_00353	tRNA links to Rfam database...	0.87	0.76	1.00	16	2834	0	0	0	0	5
SPR_00357	tRNA links to Rfam database...	0.58	0.33	1.00	7	2919	0	0	0	0	14
SPR_00358	tRNA links to Rfam database...	0.89	0.80	1.00	16	2910	0	0	0	0	4
SPR_00370	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	0	0	0	0	0
SPR_00386	tRNA links to Rfam database...	0.59	0.35	1.00	7	4179	0	0	0	0	13
SPR_00414	tRNA links to Rfam database...	0.87	0.81	0.94	17	3552	5	0	1	4	4
SPR_00415	tRNA links to Rfam database...	1.00	1.00	1.00	21	3549	4	0	0	4	0
SPR_00417	tRNA links to Rfam database...	0.68	0.55	0.86	12	3556	6	0	2	4	10
SPR_00418	tRNA links to Rfam database...	0.56	0.55	0.57	12	3549	13	3	6	4	10
SPR_00434	tRNA links to Rfam database...	0.90	0.81	1.00	17	2833	0	0	0	0	4
SPR_00435	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00436	tRNA links to Rfam database...	0.90	0.81	1.00	17	2833	2	0	0	2	4
SPR_00437	tRNA links to Rfam database...	0.90	0.81	1.00	17	2758	2	0	0	2	4
SPR_00438	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	0	0	0	0	0
SPR_00452	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00455	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00456	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	2	0	0	2	0
SPR_00476	tRNA links to Rfam database...	0.90	0.81	1.00	17	2758	0	0	0	0	4
SPR_00479	tRNA links to Rfam database...	0.90	0.81	1.00	17	2833	0	0	0	0	4
SPR_00482	tRNA links to Rfam database...	0.90	0.81	1.00	17	2684	0	0	0	0	4
SPR_00483	tRNA links to Rfam database...	0.90	0.81	1.00	17	2833	0	0	0	0	4
SPR_00487	tRNA links to Rfam database...	0.56	0.32	1.00	7	2694	0	0	0	0	15
SPR_00493	tRNA links to Rfam database...	0.88	0.82	0.95	18	2756	1	0	1	0	4
SPR_00496	tRNA links to Rfam database...	0.90	0.81	1.00	17	2758	0	0	0	0	4
SPR_00497	tRNA links to Rfam database...	0.90	0.81	1.00	17	2758	0	0	0	0	4
SPR_00502	tRNA links to Rfam database...	0.90	0.81	1.00	17	2909	0	0	0	0	4
SPR_00504	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	0	0	0	0	0
SPR_00505	tRNA links to Rfam database...	0.89	0.80	1.00	16	2910	0	0	0	0	4
SPR_00506	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00509	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	3	0	0	3	0
SPR_00512	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	3	0	0	3	0
SPR_00513	tRNA links to Rfam database...	0.71	0.50	1.00	10	2916	0	0	0	0	10
SPR_00518	tRNA links to Rfam database...	0.89	0.80	1.00	16	2910	0	0	0	0	4
SPR_00548	tRNA links to Rfam database...	0.90	0.86	0.95	18	3384	1	0	1	0	3
SPR_00557	tRNA links to Rfam database...	0.90	0.81	1.00	17	2833	0	0	0	0	4
SPR_00561	tRNA links to Rfam database...	0.90	0.81	1.00	17	2833	0	0	0	0	4
SPR_00590	tRNA links to Rfam database...	0.00	0.00	0.00	0	3003	0	0	0	0	20
SPR_00593	tRNA links to Rfam database...	0.76	0.63	0.92	12	2762	2	0	1	1	7
SPR_00595	tRNA links to Rfam database...	0.75	0.57	1.00	12	2763	0	0	0	0	9
SPR_00598	tRNA links to Rfam database...	0.70	0.57	0.86	12	2989	3	0	2	1	9
SPR_00610	tRNA links to Rfam database...	0.70	0.57	0.86	12	2542	3	0	2	1	9
SPR_00620	tRNA links to Rfam database...	0.70	0.57	0.86	12	2989	3	0	2	1	9
SPR_00721	tRNA links to Rfam database...	0.72	0.57	0.92	12	2913	3	0	1	2	9
SPR_00722	tRNA links to Rfam database...	0.89	0.80	1.00	16	2910	0	0	0	0	4
SPR_00758	tRNA links to Rfam database...	0.83	0.81	0.85	17	2983	3	0	3	0	4
SPR_00760	tRNA links to Rfam database...	0.47	0.43	0.53	9	3553	9	0	8	1	12
SPR_00777	tRNA links to Rfam database...	0.95	0.95	0.95	19	2608	3	0	1	2	1
SPR_00867	tRNA links to Rfam database...	0.95	0.95	0.95	20	2905	4	0	1	3	1
SPR_00868	tRNA links to Rfam database...	0.81	0.81	0.81	17	2905	5	0	4	1	4
SPR_00943	tRNA links to Rfam database...	0.74	0.60	0.92	12	2543	2	0	1	1	8
SPR_00957	tRNA links to Rfam database...	0.65	0.57	0.75	12	2987	5	0	4	1	9
SPR_01040	tRNA links to Rfam database...	0.58	0.33	1.00	7	2768	0	0	0	0	14
SPR_01088	tRNA links to Rfam database...	0.90	0.81	1.00	17	2909	0	0	0	0	4
SPR_01095	tRNA links to Rfam database...	0.58	0.33	1.00	7	2843	0	0	0	0	14
SPR_01106	tRNA links to Rfam database...	0.90	0.81	1.00	17	2539	2	0	0	2	4
SPR_01117	tRNA links to Rfam database...	0.95	0.95	0.95	20	2982	2	0	1	1	1
SPR_01157	tRNA links to Rfam database...	0.76	0.76	0.76	16	2754	6	0	5	1	5
SRP_00006	Metazoa_SRP links to Rfam database...	0.68	0.48	0.98	48	45704	6	0	1	5	53
SRP_00008	Bacteria_small_SRP links to Rfam database...	0.85	0.72	1.00	18	2908	0	0	0	0	7
SRP_00011	Plant_SRP links to Rfam database...	0.57	0.33	1.00	34	46326	1	0	0	1	70
SRP_00015	Plant_SRP links to Rfam database...	0.65	0.46	0.90	46	46309	7	0	5	2	53
SRP_00020	Bacteria_small_SRP links to Rfam database...	0.52	0.27	1.00	9	5556	0	0	0	0	24
SRP_00024	Bacteria_large_SRP links to Rfam database...	0.22	0.06	0.83	5	37669	1	0	1	0	82
SRP_00026	Bacteria_large_SRP links to Rfam database...	0.24	0.06	1.00	5	36851	0	0	0	0	83
SRP_00027	Bacteria_large_SRP links to Rfam database...	0.24	0.06	1.00	5	37123	0	0	0	0	82
SRP_00030	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	36856	0	0	0	0	88
SRP_00031	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	36315	0	0	0	0	89
SRP_00037	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	36585	0	0	0	0	87
SRP_00038	Bacteria_small_SRP links to Rfam database...	0.19	0.12	0.31	4	5037	9	0	9	0	29
SRP_00042	Bacteria_small_SRP links to Rfam database...	0.54	0.36	0.82	9	3994	3	1	1	1	16
SRP_00044	Bacteria_small_SRP links to Rfam database...	0.31	0.09	1.00	3	6102	0	0	0	0	29
SRP_00046	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	4744	9	1	8	0	32
SRP_00050	Metazoa_SRP links to Rfam database...	0.60	0.44	0.81	44	44796	12	0	10	2	55
SRP_00051	Bacteria_small_SRP links to Rfam database...	0.32	0.10	1.00	3	5457	0	0	0	0	27
SRP_00054	Bacteria_small_SRP links to Rfam database...	0.31	0.09	1.00	3	5562	0	0	0	0	29
SRP_00057	Bacteria_small_SRP links to Rfam database...	0.29	0.09	1.00	3	6325	0	0	0	0	32
SRP_00058	Bacteria_small_SRP links to Rfam database...	0.30	0.09	1.00	3	5775	0	0	0	0	31
SRP_00066	Metazoa_SRP links to Rfam database...	0.60	0.40	0.89	40	45406	8	0	5	3	60
SRP_00072	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6323	5	2	3	0	29
SRP_00074	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6551	4	0	4	0	29
SRP_00075	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	5555	10	2	8	0	34
SRP_00077	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6666	4	0	4	0	37
SRP_00081	Bacteria_small_SRP links to Rfam database...	0.31	0.10	1.00	3	5562	0	0	0	0	28
SRP_00084	Bacteria_small_SRP links to Rfam database...	0.30	0.09	1.00	3	5457	0	0	0	0	31
SRP_00086	Metazoa_SRP links to Rfam database...	0.65	0.47	0.89	47	44200	7	0	6	1	53
SRP_00088	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	34191	0	0	0	0	89
SRP_00089	Bacteria_large_SRP links to Rfam database...	0.24	0.06	1.00	5	35773	0	0	0	0	85
SRP_00090	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	35511	0	0	0	0	90
SRP_00094	Bacteria_small_SRP links to Rfam database...	0.59	0.50	0.71	12	4078	5	1	4	0	12
SRP_00095	Bacteria_small_SRP links to Rfam database...	0.40	0.28	0.58	7	3993	5	1	4	0	18
SRP_00098	Bacteria_small_SRP links to Rfam database...	0.28	0.08	1.00	3	6438	0	0	0	0	34
SRP_00102	Metazoa_SRP links to Rfam database...	0.62	0.46	0.84	46	44496	12	1	8	3	55
SRP_00103	Metazoa_SRP links to Rfam database...	0.64	0.44	0.92	45	45402	7	0	4	3	57
SRP_00105	Bacteria_small_SRP links to Rfam database...	0.30	0.09	1.00	3	5562	0	0	0	0	31
SRP_00107	Bacteria_small_SRP links to Rfam database...	0.40	0.16	1.00	3	3652	0	0	0	0	16
SRP_00121	Bacteria_small_SRP links to Rfam database...	0.35	0.12	1.00	3	4275	0	0	0	0	22
SRP_00128	Bacteria_small_SRP links to Rfam database...	0.29	0.08	1.00	3	6783	0	0	0	0	33
SRP_00132	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	4845	6	1	5	0	29
SRP_00134	Bacteria_large_SRP links to Rfam database...	0.32	0.10	1.00	3	5992	0	0	0	0	26
SRP_00141	Bacteria_small_SRP links to Rfam database...	0.27	0.07	1.00	3	6325	0	0	0	0	38
SRP_00152	Plant_SRP links to Rfam database...	0.58	0.39	0.87	40	45707	6	0	6	0	63
SRP_00161	Bacteria_small_SRP links to Rfam database...	0.64	0.45	0.91	10	2839	1	0	1	0	12
SRP_00162	Bacteria_small_SRP links to Rfam database...	0.61	0.61	0.61	14	2903	11	2	7	2	9
SRP_00163	Bacteria_small_SRP links to Rfam database...	0.34	0.12	1.00	3	3483	0	0	0	0	23
SRP_00164	Bacteria_small_SRP links to Rfam database...	0.29	0.09	1.00	3	6900	0	0	0	0	32
SRP_00170	Bacteria_small_SRP links to Rfam database...	0.64	0.48	0.86	12	4081	3	1	1	1	13
SRP_00171	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	45435	16	2	14	0	88
SRP_00173	Bacteria_large_SRP links to Rfam database...	0.24	0.06	1.00	5	38221	0	0	0	0	85
SRP_00174	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	38781	0	0	0	0	86
SRP_00178	Plant_SRP links to Rfam database...	0.53	0.28	1.00	29	45724	2	0	0	2	73
SRP_00179	Plant_SRP links to Rfam database...	0.70	0.50	0.96	53	46001	5	0	2	3	52
SRP_00181	Plant_SRP links to Rfam database...	0.56	0.31	1.00	32	46024	2	0	0	2	70
SRP_00182	Plant_SRP links to Rfam database...	0.43	0.22	0.85	22	46030	4	0	4	0	79
SRP_00184	Plant_SRP links to Rfam database...	0.35	0.16	0.76	16	46035	8	0	5	3	84
SRP_00188	Plant_SRP links to Rfam database...	0.24	0.11	0.53	9	31108	8	1	7	0	70
SRP_00194	Bacteria_small_SRP links to Rfam database...	0.38	0.14	1.00	3	3237	0	0	0	0	18
SRP_00200	Bacteria_small_SRP links to Rfam database...	0.29	0.08	1.00	3	6900	0	0	0	0	33
SRP_00209	Bacteria_small_SRP links to Rfam database...	0.30	0.19	0.50	5	4646	5	0	5	0	22
SRP_00213	Bacteria_small_SRP links to Rfam database...	0.58	0.40	0.83	10	4174	2	1	1	0	15
SRP_00215	Bacteria_small_SRP links to Rfam database...	0.35	0.12	1.00	3	3237	0	0	0	0	22
SRP_00227	Bacteria_small_SRP links to Rfam database...	0.69	0.48	1.00	15	5136	0	0	0	0	16
SRP_00228	Metazoa_SRP links to Rfam database...	0.77	0.61	0.98	58	45392	3	0	1	2	37
SRP_00231	Bacteria_small_SRP links to Rfam database...	0.53	0.47	0.59	16	5433	11	1	10	0	18
SRP_00233	Bacteria_small_SRP links to Rfam database...	0.30	0.09	1.00	3	5148	0	0	0	0	30
SRP_00234	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	36315	0	0	0	0	86
SRP_00243	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	5145	6	1	5	0	31
SRP_00244	Bacteria_small_SRP links to Rfam database...	0.28	0.08	1.00	3	6900	0	0	0	0	36
SRP_00250	Bacteria_small_SRP links to Rfam database...	0.29	0.08	1.00	3	6783	0	0	0	0	33
SRP_00251	Bacteria_small_SRP links to Rfam database...	0.29	0.08	1.00	3	7018	0	0	0	0	33
SRP_00266	Bacteria_small_SRP links to Rfam database...	0.32	0.10	1.00	3	4653	0	0	0	0	26
SRP_00268	Bacteria_small_SRP links to Rfam database...	0.64	0.48	0.87	13	4171	2	1	1	0	14
SRP_00269	Bacteria_small_SRP links to Rfam database...	0.72	0.52	1.00	17	5033	0	0	0	0	16
SRP_00270	Bacteria_small_SRP links to Rfam database...	0.44	0.19	1.00	6	4650	0	0	0	0	25
SRP_00271	Bacteria_small_SRP links to Rfam database...	0.35	0.13	1.00	3	3237	0	0	0	0	21
SRP_00273	Bacteria_small_SRP links to Rfam database...	0.56	0.48	0.66	19	6757	10	1	9	0	21
SRP_00274	Bacteria_small_SRP links to Rfam database...	0.28	0.08	1.00	3	6900	0	0	0	0	35
SRP_00295	Bacteria_small_SRP links to Rfam database...	0.71	0.50	1.00	19	6884	0	0	0	0	19
SRP_00303	Bacteria_small_SRP links to Rfam database...	0.31	0.09	1.00	3	6667	0	0	0	0	29
SRP_00308	Bacteria_large_SRP links to Rfam database...	0.30	0.10	0.90	9	36305	1	0	1	0	79
SRP_00310	Bacteria_small_SRP links to Rfam database...	0.47	0.26	0.86	6	2919	1	0	1	0	17
SRP_00312	Bacteria_small_SRP links to Rfam database...	0.55	0.37	0.83	10	4174	2	1	1	0	17
SRP_00315	Bacteria_small_SRP links to Rfam database...	0.47	0.26	0.86	6	2919	1	0	1	0	17
SRP_00317	Metazoa_SRP links to Rfam database...	0.58	0.38	0.88	37	45108	6	0	5	1	61
SRP_00318	Bacteria_small_SRP links to Rfam database...	0.47	0.26	0.86	6	2996	1	0	1	0	17
SRP_00325	Bacteria_small_SRP links to Rfam database...	0.72	0.52	1.00	17	4354	0	0	0	0	16
SRP_00326	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	5050	0	0	0	0	31
SRP_00333	Bacteria_small_SRP links to Rfam database...	0.30	0.09	1.00	3	5148	0	0	0	0	31
SRP_00335	Bacteria_large_SRP links to Rfam database...	0.28	0.08	1.00	3	35242	0	0	0	0	36
SRP_00337	Bacteria_large_SRP links to Rfam database...	0.23	0.05	1.00	5	35506	0	0	0	0	86
SRP_00338	Bacteria_small_SRP links to Rfam database...	0.29	0.08	1.00	3	5457	0	0	0	0	33
SRP_00341	Bacteria_small_SRP links to Rfam database...	0.31	0.10	1.00	3	4750	0	0	0	0	28
SRP_00342	Bacteria_small_SRP links to Rfam database...	0.35	0.12	1.00	3	4002	0	0	0	0	22
SRP_00347	Metazoa_SRP links to Rfam database...	0.71	0.53	0.96	51	46612	3	0	2	1	45
SRP_00350	Bacteria_small_SRP links to Rfam database...	0.52	0.33	0.82	9	3905	2	1	1	0	18
SRP_00356	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	5043	7	2	5	0	30
SRP_00357	Bacteria_small_SRP links to Rfam database...	0.29	0.08	1.00	3	5353	0	0	0	0	33
SRP_00358	Bacteria_small_SRP links to Rfam database...	0.29	0.09	1.00	3	6325	0	0	0	0	32
SRP_00367	Bacteria_small_SRP links to Rfam database...	0.29	0.09	1.00	3	6783	0	0	0	0	32
SRP_00368	Metazoa_SRP links to Rfam database...	0.55	0.39	0.78	38	43907	14	0	11	3	60
SRP_00369	Bacteria_small_SRP links to Rfam database...	0.29	0.09	1.00	3	5775	0	0	0	0	32
SRP_00383	Bacteria_small_SRP links to Rfam database...	0.35	0.13	1.00	3	3237	0	0	0	0	21
TMR_00017	tmRNA links to Rfam database...	0.51	0.35	0.75	36	67113	12	1	11	0	66
TMR_00018	tmRNA links to Rfam database...	0.48	0.34	0.69	31	64575	14	3	11	0	61
TMR_00038	tmRNA links to Rfam database...	0.33	0.11	1.00	12	71241	0	0	0	0	98
TMR_00042	tmRNA links to Rfam database...	0.55	0.35	0.87	34	62796	6	1	4	1	64
TMR_00046	tmRNA links to Rfam database...	0.59	0.35	1.00	34	62801	0	0	0	0	62
TMR_00048	tmRNA links to Rfam database...	0.43	0.26	0.71	25	64945	13	1	9	3	70
TMR_00080	tmRNA links to Rfam database...	0.27	0.17	0.44	16	70464	20	7	13	0	80
TMR_00082	tmRNA links to Rfam database...	0.48	0.31	0.75	30	67856	11	5	5	1	66
TMR_00123	tmRNA links to Rfam database...	0.36	0.13	1.00	13	66417	0	0	0	0	88
TMR_00137	tmRNA links to Rfam database...	0.44	0.19	1.00	17	61058	0	0	0	0	72
TMR_00142	tmRNA links to Rfam database...	0.41	0.20	0.87	20	70853	3	0	3	0	82
TMR_00207	tmRNA links to Rfam database...	0.41	0.25	0.67	26	72351	13	2	11	0	77
TMR_00257	tmRNA links to Rfam database...	0.56	0.35	0.92	34	67124	4	2	1	1	64
TMR_00271	tmRNA links to Rfam database...	0.37	0.21	0.66	19	64232	14	4	6	4	72
TMR_00332	tmRNA links to Rfam database...	0.55	0.33	0.92	33	67125	3	2	1	0	66
TMR_00366	tmRNA links to Rfam database...	0.46	0.22	0.96	22	67873	1	0	1	0	78
TMR_00378	tmRNA links to Rfam database...	0.47	0.23	0.96	22	67873	1	0	1	0	75
TMR_00399	tmRNA links to Rfam database...	0.39	0.26	0.59	24	64939	17	5	12	0	70
TMR_00404	tmRNA links to Rfam database...	0.63	0.41	0.95	38	67488	2	1	1	0	54
TMR_00427	tmRNA links to Rfam database...	0.23	0.05	1.00	5	67523	0	0	0	0	92
TMR_00443	tmRNA links to Rfam database...	0.64	0.50	0.81	52	67097	12	1	11	0	52
TMR_00451	tmRNA links to Rfam database...	0.52	0.31	0.85	28	63513	5	0	5	0	61
TMR_00458	tmRNA links to Rfam database...	0.59	0.38	0.92	35	63508	3	2	1	0	58
TMR_00469	tmRNA links to Rfam database...	0.41	0.17	1.00	17	64603	0	0	0	0	83
TMR_00472	tmRNA links to Rfam database...	0.49	0.24	1.00	23	64597	0	0	0	0	74
TMR_00519	tmRNA links to Rfam database...	0.47	0.23	0.96	22	63167	1	1	0	0	73
TMR_00520	tmRNA links to Rfam database...	0.48	0.23	1.00	23	63167	0	0	0	0	76
TMR_00522	tmRNA links to Rfam database...	0.27	0.07	1.00	7	63183	0	0	0	0	90
TMR_00528	tmRNA links to Rfam database...	0.27	0.07	1.00	7	63183	0	0	0	0	90
TMR_00540	tmRNA links to Rfam database...	0.61	0.40	0.91	42	73490	4	1	3	0	62
TMR_00568	tmRNA links to Rfam database...	0.58	0.42	0.79	42	60673	13	1	10	2	57
TMR_00571	tmRNA links to Rfam database...	0.63	0.46	0.85	46	60672	11	1	7	3	53
TMR_00580	tmRNA links to Rfam database...	0.58	0.42	0.81	42	60674	13	1	9	3	58
TMR_00584	tmRNA links to Rfam database...	0.65	0.46	0.92	45	61026	6	0	4	2	52
TMR_00586	tmRNA links to Rfam database...	0.53	0.39	0.72	38	61022	17	4	11	2	59
TMR_00616	tmRNA links to Rfam database...	0.41	0.17	1.00	17	67144	0	0	0	0	82
TMR_00699	tmRNA links to Rfam database...	0.42	0.25	0.74	25	67127	9	3	6	0	77
TMR_00702	tmRNA links to Rfam database...	0.38	0.20	0.71	20	67133	9	2	6	1	80
TMR_00703	tmRNA links to Rfam database...	0.37	0.25	0.54	25	67482	21	3	18	0	74

^top

Performance of MaxExpect - scored lower in this pairwise comparison

1. Total counts & total scores for MaxExpect

Total Base Pair Counts
Total TP	35034
Total TN	119775158
Total FP	35784
Total FP CONTRA	4534
Total FP INCONS	26957
Total FP COMP	4293
Total FN	35200

Total Scores
MCC	0.512
Average MCC ± 95% Confidence Intervals	0.633 ± 0.019
Sensitivity	0.499
Positive Predictive Value	0.527
Nr of predictions	642

^top

2. Individual counts for MaxExpect [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00004	RNaseP_bact_a links to Rfam database...	0.71	0.69	0.74	67	47804	25	9	15	1	30
ASE_00005	RNaseP_bact_a links to Rfam database...	0.66	0.57	0.75	67	57881	28	0	22	6	50
ASE_00006	RNaseP_bact_a links to Rfam database...	0.55	0.55	0.55	51	47494	47	10	31	6	42
ASE_00007	RNaseP_bact_a links to Rfam database...	0.73	0.68	0.79	75	59590	27	0	20	7	35
ASE_00012	RNaseP_bact_a links to Rfam database...	0.50	0.44	0.57	54	73825	45	2	39	4	69
ASE_00018	RNaseP_bact_a links to Rfam database...	0.54	0.51	0.57	69	80479	55	1	52	2	65
ASE_00020	RNaseP_bact_a links to Rfam database...	0.60	0.57	0.64	72	73807	43	6	35	2	54
ASE_00021	RNaseP_bact_a links to Rfam database...	0.60	0.54	0.68	86	104069	48	4	37	7	74
ASE_00022	RNaseP_bact_b links to Rfam database...	0.49	0.45	0.54	56	82924	54	4	44	6	68
ASE_00028	RNaseP_bact_b links to Rfam database...	0.72	0.69	0.76	87	84551	37	5	23	9	39
ASE_00035	RNaseP_bact_a links to Rfam database...	0.39	0.36	0.42	42	70400	65	4	54	7	76
ASE_00037	RNaseP_bact_a links to Rfam database...	0.45	0.40	0.50	44	59252	47	0	44	3	66
ASE_00038	RNaseP_bact_a links to Rfam database...	0.75	0.70	0.81	71	53540	25	2	15	8	30
ASE_00040	RNaseP_bact_a links to Rfam database...	0.53	0.50	0.56	66	78886	58	3	48	7	67
ASE_00041	RNaseP_bact_a links to Rfam database...	0.45	0.42	0.48	45	57536	52	4	45	3	63
ASE_00042	RNaseP_bact_a links to Rfam database...	0.48	0.46	0.52	66	89972	66	2	60	4	79
ASE_00044	RNaseP_bact_a links to Rfam database...	0.74	0.73	0.74	77	54511	32	4	23	5	28
ASE_00045	RNaseP_bact_b links to Rfam database...	0.65	0.65	0.66	52	47199	34	6	21	7	28
ASE_00064	RNaseP_bact_a links to Rfam database...	0.39	0.39	0.38	35	45359	64	6	51	7	54
ASE_00068	RNaseP_bact_a links to Rfam database...	0.62	0.56	0.69	48	37605	27	2	20	5	37
ASE_00074	RNaseP_bact_a links to Rfam database...	0.52	0.51	0.54	61	67782	55	4	49	2	58
ASE_00075	RNaseP_bact_a links to Rfam database...	0.69	0.63	0.75	102	108675	41	2	32	7	60
ASE_00077	RNaseP_bact_a links to Rfam database...	0.56	0.53	0.58	46	45071	39	4	29	6	40
ASE_00078	RNaseP_bact_a links to Rfam database...	0.72	0.66	0.79	55	43001	20	1	14	5	28
ASE_00080	RNaseP_bact_a links to Rfam database...	0.57	0.54	0.60	66	71521	49	6	38	5	57
ASE_00081	RNaseP_bact_a links to Rfam database...	0.79	0.71	0.87	69	49691	11	1	9	1	28
ASE_00082	RNaseP_bact_a links to Rfam database...	0.80	0.73	0.88	85	70403	25	0	12	13	31
ASE_00083	RNaseP_bact_a links to Rfam database...	0.73	0.68	0.78	75	62385	26	2	19	5	35
ASE_00084	RNaseP_bact_a links to Rfam database...	0.78	0.75	0.82	74	53538	21	1	15	5	25
ASE_00087	RNaseP_bact_a links to Rfam database...	0.70	0.65	0.77	93	88289	34	1	27	6	51
ASE_00090	RNaseP_bact_a links to Rfam database...	0.67	0.67	0.67	68	55509	41	4	30	7	33
ASE_00092	RNaseP_bact_a links to Rfam database...	0.76	0.71	0.81	80	63447	23	3	16	4	33
ASE_00099	RNaseP_bact_a links to Rfam database...	0.77	0.70	0.86	84	64522	19	0	14	5	36
ASE_00104	RNaseP_bact_a links to Rfam database...	0.70	0.66	0.76	78	64158	28	2	23	3	41
ASE_00105	RNaseP_bact_a links to Rfam database...	0.44	0.41	0.47	45	64166	58	6	44	8	66
ASE_00107	RNaseP_bact_a links to Rfam database...	0.74	0.69	0.79	88	73041	26	1	23	2	39
ASE_00114	RNaseP_bact_b links to Rfam database...	0.53	0.48	0.60	37	45389	38	2	23	13	40
ASE_00115	RNaseP_bact_a links to Rfam database...	0.70	0.68	0.72	69	54519	35	4	23	8	32
ASE_00118	RNaseP_bact_a links to Rfam database...	0.49	0.47	0.51	48	60632	49	3	43	3	54
ASE_00119	RNaseP_bact_a links to Rfam database...	0.82	0.81	0.83	87	62730	20	2	16	2	21
ASE_00123	RNaseP_bact_a links to Rfam database...	0.53	0.51	0.56	43	38426	39	2	32	5	42
ASE_00125	RNaseP_bact_a links to Rfam database...	0.72	0.66	0.79	58	39267	23	0	15	8	30
ASE_00126	RNaseP_bact_a links to Rfam database...	0.82	0.80	0.84	66	40391	19	1	12	6	16
ASE_00128	RNaseP_bact_a links to Rfam database...	0.75	0.71	0.80	71	53212	26	1	17	8	29
ASE_00129	RNaseP_bact_a links to Rfam database...	0.72	0.69	0.75	77	62733	30	3	22	5	34
ASE_00131	RNaseP_bact_a links to Rfam database...	0.63	0.59	0.67	50	39265	33	1	24	8	35
ASE_00134	RNaseP_bact_a links to Rfam database...	0.40	0.41	0.40	39	50305	62	8	51	3	56
ASE_00135	RNaseP_bact_a links to Rfam database...	0.66	0.63	0.68	69	63089	39	1	31	7	40
ASE_00136	RNaseP_bact_a links to Rfam database...	0.80	0.76	0.83	70	48121	22	0	14	8	22
ASE_00137	RNaseP_bact_a links to Rfam database...	0.65	0.62	0.67	61	48425	35	1	29	5	37
ASE_00138	RNaseP_bact_a links to Rfam database...	0.62	0.59	0.64	48	40395	29	7	20	2	33
ASE_00140	RNaseP_bact_a links to Rfam database...	0.69	0.64	0.75	80	70770	29	4	22	3	45
ASE_00142	RNaseP_bact_a links to Rfam database...	0.69	0.65	0.74	79	67054	32	3	25	4	43
ASE_00146	RNaseP_bact_a links to Rfam database...	0.63	0.57	0.69	71	70773	35	1	31	3	53
ASE_00153	RNaseP_nuc links to Rfam database...	0.57	0.59	0.54	43	57551	71	8	28	35	30
ASE_00161	RNaseP_bact_b links to Rfam database...	0.36	0.36	0.36	31	53543	59	8	46	5	56
ASE_00163	RNaseP_bact_a links to Rfam database...	0.32	0.30	0.33	28	53217	64	4	52	8	65
ASE_00165	RNaseP_bact_a links to Rfam database...	0.45	0.45	0.46	45	52878	53	5	47	1	56
ASE_00170	RNaseP_bact_a links to Rfam database...	0.72	0.68	0.77	63	48746	25	2	17	6	30
ASE_00171	RNaseP_bact_a links to Rfam database...	0.72	0.70	0.74	66	48427	24	6	17	1	28
ASE_00172	RNaseP_bact_a links to Rfam database...	0.73	0.69	0.78	73	58902	27	1	20	6	33
ASE_00174	RNaseP_bact_a links to Rfam database...	0.50	0.49	0.51	53	60972	52	8	42	2	56
ASE_00175	RNaseP_bact_a links to Rfam database...	0.70	0.66	0.73	71	59934	32	2	24	6	36
ASE_00179	RNaseP_bact_a links to Rfam database...	0.58	0.57	0.59	48	44171	34	5	29	0	36
ASE_00180	RNaseP_bact_a links to Rfam database...	0.70	0.68	0.73	68	51267	30	7	18	5	32
ASE_00181	RNaseP_bact_a links to Rfam database...	0.70	0.64	0.76	68	57540	27	3	19	5	38
ASE_00182	RNaseP_bact_a links to Rfam database...	0.60	0.58	0.61	79	84126	53	5	45	3	57
ASE_00183	RNaseP_bact_a links to Rfam database...	0.71	0.67	0.75	76	61324	31	0	25	6	37
ASE_00184	RNaseP_bact_a links to Rfam database...	0.72	0.71	0.73	72	54516	30	1	26	3	30
ASE_00185	RNaseP_bact_a links to Rfam database...	0.75	0.70	0.81	90	73425	27	1	20	6	38
ASE_00186	RNaseP_bact_a links to Rfam database...	0.67	0.62	0.72	82	78889	39	3	29	7	50
ASE_00190	RNaseP_bact_b links to Rfam database...	0.60	0.57	0.63	51	45370	35	3	27	5	39
ASE_00197	RNaseP_bact_a links to Rfam database...	0.60	0.57	0.64	82	89125	52	2	44	6	63
ASE_00198	RNaseP_bact_a links to Rfam database...	0.84	0.77	0.91	79	52563	14	2	6	6	23
ASE_00203	RNaseP_bact_a links to Rfam database...	0.72	0.70	0.75	67	46576	28	4	18	6	29
ASE_00212	RNaseP_bact_a links to Rfam database...	0.61	0.57	0.65	84	93832	50	1	44	5	64
ASE_00214	RNaseP_bact_a links to Rfam database...	0.80	0.78	0.82	80	56182	27	3	15	9	23
ASE_00215	RNaseP_bact_a links to Rfam database...	0.60	0.58	0.63	57	48425	38	5	29	4	42
ASE_00216	RNaseP_bact_a links to Rfam database...	0.55	0.54	0.56	44	39262	35	9	25	1	38
ASE_00217	RNaseP_bact_a links to Rfam database...	0.38	0.34	0.41	31	40395	49	5	39	5	59
ASE_00221	RNaseP_bact_a links to Rfam database...	0.63	0.56	0.71	65	64529	30	1	25	4	52
ASE_00228	RNaseP_bact_a links to Rfam database...	0.53	0.53	0.53	46	46885	42	11	29	2	40
ASE_00229	RNaseP_bact_a links to Rfam database...	0.73	0.69	0.78	60	42409	23	1	16	6	27
ASE_00231	RNaseP_bact_a links to Rfam database...	0.62	0.59	0.64	57	47806	35	4	28	3	39
ASE_00232	RNaseP_bact_a links to Rfam database...	0.65	0.65	0.65	55	38419	32	10	19	3	29
ASE_00234	RNaseP_bact_a links to Rfam database...	0.60	0.55	0.66	71	75358	43	2	35	6	58
ASE_00238	RNaseP_bact_a links to Rfam database...	0.71	0.66	0.77	75	64163	29	2	21	6	39
ASE_00241	RNaseP_bact_a links to Rfam database...	0.57	0.54	0.61	47	43879	35	1	29	5	40
ASE_00242	RNaseP_bact_a links to Rfam database...	0.63	0.60	0.67	67	60975	34	1	32	1	45
ASE_00248	RNaseP_bact_a links to Rfam database...	0.40	0.36	0.44	41	62388	53	2	50	1	73
ASE_00254	RNaseP_bact_a links to Rfam database...	0.38	0.35	0.41	29	36786	46	5	36	5	53
ASE_00255	RNaseP_bact_a links to Rfam database...	0.56	0.54	0.59	70	74572	52	4	45	3	60
ASE_00257	RNaseP_bact_a links to Rfam database...	0.58	0.56	0.61	54	50951	41	3	32	6	43
ASE_00263	RNaseP_bact_a links to Rfam database...	0.69	0.68	0.71	81	70386	35	3	30	2	39
ASE_00267	RNaseP_bact_a links to Rfam database...	0.66	0.61	0.70	54	45073	32	1	22	9	34
ASE_00270	RNaseP_bact_a links to Rfam database...	0.81	0.78	0.84	100	72271	24	1	18	5	28
ASE_00274	RNaseP_bact_a links to Rfam database...	0.62	0.57	0.68	59	55524	30	5	23	2	44
ASE_00277	RNaseP_bact_a links to Rfam database...	0.43	0.43	0.42	39	48113	55	9	44	2	52
ASE_00279	RNaseP_bact_a links to Rfam database...	0.49	0.48	0.51	48	53207	48	7	39	2	53
ASE_00280	RNaseP_bact_a links to Rfam database...	0.51	0.49	0.54	48	51914	45	8	33	4	50
ASE_00281	RNaseP_bact_a links to Rfam database...	0.73	0.69	0.76	61	44471	28	0	19	9	27
ASE_00282	RNaseP_bact_a links to Rfam database...	0.44	0.44	0.45	56	77690	69	5	64	0	71
ASE_00283	RNaseP_bact_a links to Rfam database...	0.75	0.72	0.79	77	61678	27	3	18	6	30
ASE_00284	RNaseP_bact_a links to Rfam database...	0.68	0.66	0.71	71	58211	37	4	25	8	37
ASE_00285	RNaseP_bact_a links to Rfam database...	0.80	0.75	0.86	92	68899	25	3	12	10	30
ASE_00286	RNaseP_bact_a links to Rfam database...	0.40	0.38	0.42	35	46581	58	2	47	9	57
ASE_00287	RNaseP_bact_a links to Rfam database...	0.72	0.68	0.76	70	54854	28	2	20	6	33
ASE_00292	RNaseP_bact_a links to Rfam database...	0.47	0.43	0.52	60	81694	59	1	55	3	78
ASE_00294	RNaseP_bact_a links to Rfam database...	0.73	0.66	0.81	113	114342	31	0	26	5	58
ASE_00296	RNaseP_bact_a links to Rfam database...	0.44	0.41	0.47	59	91680	69	7	60	2	86
ASE_00297	RNaseP_bact_a links to Rfam database...	0.75	0.72	0.77	71	52883	24	3	18	3	27
ASE_00298	RNaseP_bact_a links to Rfam database...	0.52	0.50	0.54	56	67425	50	1	46	3	57
ASE_00305	RNaseP_bact_b links to Rfam database...	0.65	0.60	0.70	51	54542	33	1	21	11	34
ASE_00318	RNaseP_bact_b links to Rfam database...	0.64	0.63	0.65	74	80087	44	14	25	5	44
ASE_00321	RNaseP_bact_b links to Rfam database...	0.71	0.65	0.78	57	54542	22	1	15	6	31
ASE_00328	RNaseP_bact_b links to Rfam database...	0.67	0.63	0.73	70	72675	40	4	22	14	42
ASE_00332	RNaseP_bact_a links to Rfam database...	0.51	0.49	0.54	68	81683	62	2	57	3	70
ASE_00335	RNaseP_bact_b links to Rfam database...	0.62	0.58	0.66	67	75364	42	6	29	7	49
ASE_00340	RNaseP_bact_a links to Rfam database...	0.74	0.74	0.73	63	45970	27	7	16	4	22
ASE_00342	RNaseP_bact_a links to Rfam database...	0.62	0.58	0.67	67	62381	34	1	32	1	48
ASE_00353	RNaseP_bact_a links to Rfam database...	0.57	0.57	0.58	61	57864	49	4	41	4	46
ASE_00361	RNaseP_bact_a links to Rfam database...	0.54	0.53	0.56	67	75347	55	10	42	3	60
ASE_00362	RNaseP_bact_a links to Rfam database...	0.58	0.58	0.58	53	48114	41	2	36	3	38
ASE_00363	RNaseP_bact_a links to Rfam database...	0.58	0.55	0.60	52	51274	41	2	32	7	42
ASE_00364	RNaseP_bact_a links to Rfam database...	0.74	0.70	0.78	74	54190	29	1	20	8	31
ASE_00366	RNaseP_bact_a links to Rfam database...	0.41	0.42	0.41	41	58553	60	6	53	1	57
ASE_00367	RNaseP_bact_a links to Rfam database...	0.55	0.51	0.59	44	42997	38	1	29	8	42
ASE_00369	RNaseP_bact_a links to Rfam database...	0.63	0.63	0.64	67	55841	39	1	36	2	40
ASE_00370	RNaseP_bact_a links to Rfam database...	0.77	0.73	0.82	61	41831	22	1	12	9	23
ASE_00372	RNaseP_bact_a links to Rfam database...	0.68	0.65	0.71	65	51911	33	5	22	6	35
ASE_00374	RNaseP_bact_a links to Rfam database...	0.72	0.72	0.72	63	44763	26	3	21	2	25
ASE_00376	RNaseP_bact_a links to Rfam database...	0.67	0.64	0.71	67	56858	30	1	27	2	38
ASE_00377	RNaseP_bact_a links to Rfam database...	0.73	0.70	0.76	75	57531	30	3	21	6	32
ASE_00379	RNaseP_bact_a links to Rfam database...	0.60	0.56	0.63	50	45977	39	3	26	10	39
ASE_00382	RNaseP_bact_a links to Rfam database...	0.67	0.65	0.70	55	41826	29	6	18	5	29
ASE_00383	RNaseP_bact_a links to Rfam database...	0.46	0.42	0.50	44	54527	47	3	41	3	61
ASE_00384	RNaseP_bact_a links to Rfam database...	0.61	0.59	0.63	54	48430	37	2	30	5	38
ASE_00386	RNaseP_bact_a links to Rfam database...	0.54	0.51	0.57	49	50317	39	7	30	2	47
ASE_00387	RNaseP_bact_a links to Rfam database...	0.70	0.66	0.73	69	55851	30	1	24	5	35
ASE_00388	RNaseP_bact_a links to Rfam database...	0.61	0.55	0.67	49	45680	34	1	23	10	40
ASE_00390	RNaseP_bact_a links to Rfam database...	0.62	0.60	0.64	51	42115	39	0	29	10	34
ASE_00393	RNaseP_bact_a links to Rfam database...	0.48	0.46	0.51	43	47810	49	2	40	7	50
ASE_00394	RNaseP_bact_a links to Rfam database...	0.78	0.76	0.80	71	46882	23	2	16	5	22
ASE_00395	RNaseP_bact_a links to Rfam database...	0.67	0.65	0.68	55	41535	32	2	24	6	29
ASE_00396	RNaseP_bact_a links to Rfam database...	0.55	0.52	0.58	43	41542	36	2	29	5	40
ASE_00397	RNaseP_bact_a links to Rfam database...	0.58	0.56	0.60	59	54517	43	4	35	4	46
ASE_00398	RNaseP_bact_a links to Rfam database...	0.62	0.58	0.66	60	55854	39	1	30	8	44
ASE_00400	RNaseP_bact_a links to Rfam database...	0.66	0.63	0.70	67	57874	34	1	28	5	39
ASE_00401	RNaseP_bact_a links to Rfam database...	0.65	0.63	0.67	79	76910	40	5	34	1	47
ASE_00402	RNaseP_bact_a links to Rfam database...	0.73	0.68	0.77	58	42411	22	2	15	5	27
ASE_00403	RNaseP_bact_a links to Rfam database...	0.45	0.42	0.47	45	55850	54	1	49	4	62
ASE_00404	RNaseP_bact_a links to Rfam database...	0.53	0.49	0.58	42	42998	39	1	30	8	43
ASE_00406	RNaseP_bact_a links to Rfam database...	0.81	0.76	0.87	71	48746	21	0	11	10	23
ASE_00411	RNaseP_bact_a links to Rfam database...	0.49	0.46	0.52	41	49376	45	5	33	7	48
ASE_00412	RNaseP_bact_a links to Rfam database...	0.49	0.46	0.53	48	58220	47	5	38	4	57
ASE_00413	RNaseP_bact_a links to Rfam database...	0.64	0.65	0.63	53	44467	33	10	21	2	28
ASE_00415	RNaseP_bact_a links to Rfam database...	0.66	0.65	0.66	67	54845	36	6	28	2	36
ASE_00416	RNaseP_bact_a links to Rfam database...	0.70	0.67	0.73	85	77304	41	1	31	9	42
ASE_00419	RNaseP_bact_a links to Rfam database...	0.82	0.80	0.85	82	54849	17	5	10	2	21
ASE_00422	RNaseP_bact_a links to Rfam database...	0.78	0.77	0.79	72	46880	26	5	14	7	22
ASE_00423	RNaseP_bact_a links to Rfam database...	0.58	0.58	0.58	63	56845	45	8	37	0	46
ASE_00427	RNaseP_nuc links to Rfam database...	0.12	0.15	0.10	7	40683	78	24	41	13	39
ASE_00428	RNaseP_bact_a links to Rfam database...	0.78	0.75	0.81	94	76520	29	3	19	7	31
ASE_00430	RNaseP_bact_a links to Rfam database...	0.75	0.74	0.76	72	46876	30	5	18	7	25
ASE_00437	RNaseP_bact_a links to Rfam database...	0.44	0.41	0.49	55	79288	62	0	58	4	80
ASE_00441	RNaseP_bact_a links to Rfam database...	0.79	0.74	0.84	83	64162	21	1	15	5	29
ASE_00448	RNaseP_bact_a links to Rfam database...	0.22	0.22	0.22	25	64149	93	7	80	6	87
ASE_00451	RNaseP_bact_a links to Rfam database...	0.64	0.60	0.68	75	70765	41	3	33	5	50
CRW_00024	SSU_rRNA_archaea links to Rfam database...	0.71	0.70	0.71	320	1085152	169	17	112	40	138
CRW_00034	SSU_rRNA_bacteria links to Rfam database...	0.66	0.65	0.66	310	1141844	191	28	134	29	164
CRW_00048	SSU_rRNA_bacteria links to Rfam database...	0.52	0.48	0.57	226	1170816	189	20	153	16	244
CRW_00054	SSU_rRNA_bacteria links to Rfam database...	0.43	0.42	0.44	192	1107377	261	23	224	14	264
CRW_00059	SSU_rRNA_bacteria links to Rfam database...	0.51	0.49	0.54	232	1172316	212	16	182	14	241
CRW_00061	SSU_rRNA_bacteria links to Rfam database...	0.44	0.43	0.45	203	1181497	266	35	218	13	273
CRW_00068	SSU_rRNA_bacteria links to Rfam database...	0.44	0.43	0.45	197	1108869	251	32	207	12	260
CRW_00096	SSU_rRNA_bacteria links to Rfam database...	0.49	0.47	0.52	220	1178453	229	21	186	22	245
CRW_00140	SSU_rRNA_bacteria links to Rfam database...	0.43	0.42	0.44	193	1135835	265	20	230	15	270
CRW_00141	SSU_rRNA_bacteria links to Rfam database...	0.54	0.53	0.55	254	1201566	230	30	175	25	222
CRW_00150	SSU_rRNA_bacteria links to Rfam database...	0.44	0.43	0.46	202	1152479	257	24	216	17	264
CRW_00152	SSU_rRNA_bacteria links to Rfam database...	0.58	0.55	0.60	259	1179986	190	37	134	19	212
CRW_00166	SSU_rRNA_bacteria links to Rfam database...	0.43	0.41	0.46	192	1190777	241	18	209	14	276
CRW_00173	SSU_rRNA_bacteria links to Rfam database...	0.26	0.26	0.27	115	1082230	324	28	283	13	330
CRW_00177	SSU_rRNA_bacteria links to Rfam database...	0.48	0.47	0.50	221	1178440	239	26	193	20	252
CRW_00196	SSU_rRNA_bacteria links to Rfam database...	0.50	0.49	0.51	233	1207782	238	32	188	18	242
CRW_00230	SSU_rRNA_bacteria links to Rfam database...	0.58	0.55	0.60	263	1198489	199	15	159	25	215
CRW_00245	SSU_rRNA_bacteria links to Rfam database...	0.42	0.41	0.43	186	1105895	262	25	222	15	267
CRW_00248	SSU_rRNA_bacteria links to Rfam database...	0.51	0.51	0.51	248	1218656	263	29	208	26	236
CRW_00250	SSU_rRNA_bacteria links to Rfam database...	0.51	0.50	0.51	241	1198458	244	44	183	17	237
CRW_00256	SSU_rRNA_bacteria links to Rfam database...	0.40	0.39	0.41	182	1192293	285	38	227	20	286
CRW_00270	SSU_rRNA_bacteria links to Rfam database...	0.54	0.54	0.55	244	1111842	223	23	177	23	211
CRW_00271	SSU_rRNA_bacteria links to Rfam database...	0.33	0.32	0.34	146	1122327	292	34	244	14	316
CRW_00273	SSU_rRNA_bacteria links to Rfam database...	0.42	0.40	0.45	180	1085197	237	27	197	13	266
CRW_00275	SSU_rRNA_bacteria links to Rfam database...	0.61	0.60	0.62	273	1114831	186	26	141	19	184
CRW_00277	SSU_rRNA_bacteria links to Rfam database...	0.35	0.33	0.37	148	1110390	267	37	220	10	305
CRW_00278	SSU_rRNA_bacteria links to Rfam database...	0.39	0.36	0.42	160	1129876	240	22	198	20	290
CRW_00279	SSU_rRNA_bacteria links to Rfam database...	0.54	0.53	0.56	244	1179977	213	26	169	18	220
CRW_00280	SSU_rRNA_bacteria links to Rfam database...	0.36	0.35	0.37	157	1117836	279	37	230	12	296
CRW_00281	SSU_rRNA_bacteria links to Rfam database...	0.59	0.58	0.60	270	1144891	201	25	155	21	194
CRW_00284	SSU_rRNA_bacteria links to Rfam database...	0.38	0.35	0.41	159	1131368	249	21	212	16	297
CRW_00285	SSU_rRNA_bacteria links to Rfam database...	0.56	0.54	0.58	246	1117835	199	26	153	20	212
CRW_00289	SSU_rRNA_bacteria links to Rfam database...	0.48	0.46	0.50	218	1189213	245	32	190	23	258
CRW_00298	SSU_rRNA_eukarya links to Rfam database...	0.24	0.25	0.24	123	1620380	438	79	318	41	371
CRW_00301	SSU_rRNA_eukarya links to Rfam database...	0.35	0.35	0.35	180	1761991	393	60	272	61	339
CRW_00306	SSU_rRNA_eukarya links to Rfam database...	0.18	0.19	0.18	86	1445370	462	62	332	68	376
CRW_00310	SSU_rRNA_eukarya links to Rfam database...	0.30	0.30	0.30	157	1805427	422	63	303	56	364
CRW_00326	SSU_rRNA_eukarya links to Rfam database...	0.41	0.41	0.42	205	1627618	330	55	232	43	297
CRW_00330	SSU_rRNA_eukarya links to Rfam database...	0.33	0.33	0.32	172	1988480	429	65	298	66	345
CRW_00332	SSU_rRNA_eukarya links to Rfam database...	0.18	0.18	0.17	87	1769512	473	87	335	51	390
CRW_00333	SSU_rRNA_eukarya links to Rfam database...	0.33	0.32	0.35	166	1892006	380	65	248	67	348
CRW_00345	SSU_rRNA_eukarya links to Rfam database...	0.35	0.35	0.36	174	1586388	361	52	257	52	324
CRW_00346	SSU_rRNA_eukarya links to Rfam database...	0.37	0.38	0.37	188	1584581	361	62	259	40	313
CRW_00348	SSU_rRNA_eukarya links to Rfam database...	0.31	0.30	0.33	151	1615043	353	51	258	44	352
CRW_00358	SSU_rRNA_eukarya links to Rfam database...	0.41	0.41	0.42	206	1674869	336	56	234	46	301
CRW_00366	SSU_rRNA_eukarya links to Rfam database...	0.27	0.28	0.26	134	1579236	421	78	305	38	348
CRW_00370	SSU_rRNA_eukarya links to Rfam database...	0.30	0.30	0.30	151	1640256	403	77	282	44	355
CRW_00371	SSU_rRNA_eukarya links to Rfam database...	0.40	0.39	0.42	192	1611452	316	45	221	50	304
CRW_00372	SSU_rRNA_eukarya links to Rfam database...	0.28	0.28	0.27	139	1625798	414	78	291	45	359
CRW_00379	SSU_rRNA_eukarya links to Rfam database...	0.44	0.44	0.43	234	2126414	384	57	248	79	300
CRW_00386	SSU_rRNA_eukarya links to Rfam database...	0.26	0.27	0.25	138	1750712	440	78	328	34	377
CRW_00403	SSU_rRNA_eukarya links to Rfam database...	0.31	0.31	0.31	144	1606062	415	58	264	93	320
CRW_00411	SSU_rRNA_eukarya links to Rfam database...	0.33	0.33	0.34	163	1615021	361	68	251	42	333
CRW_00414	SSU_rRNA_eukarya links to Rfam database...	0.30	0.31	0.30	153	1665712	421	60	300	61	342
CRW_00466	SSU_rRNA_bacteria links to Rfam database...	0.61	0.60	0.62	273	1116325	188	25	142	21	185
CRW_00548	5S_rRNA links to Rfam database...	0.85	0.82	0.89	31	7346	7	0	4	3	7
CRW_00552	5S_rRNA links to Rfam database...	0.81	0.74	0.88	29	7107	8	0	4	4	10
CRW_00555	5S_rRNA links to Rfam database...	0.73	0.68	0.79	27	7592	7	0	7	0	13
CRW_00567	5S_rRNA links to Rfam database...	0.68	0.68	0.69	27	7464	15	4	8	3	13
CRW_00570	5S_rRNA links to Rfam database...	0.89	0.89	0.89	33	6866	7	0	4	3	4
CRW_00573	5S_rRNA links to Rfam database...	0.25	0.25	0.26	10	7102	28	0	28	0	30
CRW_00589	SSU_rRNA_bacteria links to Rfam database...	0.32	0.31	0.34	136	1094057	285	28	239	18	309
CRW_00590	SSU_rRNA_bacteria links to Rfam database...	0.40	0.37	0.43	169	1119363	246	23	201	22	283
CRW_00591	SSU_rRNA_bacteria links to Rfam database...	0.44	0.43	0.44	194	1098463	264	36	210	18	252
CRW_00598	SSU_rRNA_eukarya links to Rfam database...	0.38	0.39	0.38	190	1665724	360	63	248	49	301
CRW_00758	SSU_rRNA_eukarya links to Rfam database...	0.33	0.32	0.34	155	1640308	356	41	262	53	328
CRW_00759	SSU_rRNA_eukarya links to Rfam database...	0.31	0.31	0.30	151	1636649	407	59	286	62	330
CRW_00760	SSU_rRNA_eukarya links to Rfam database...	0.29	0.29	0.28	143	1638449	415	65	298	52	343
CRW_00772	SSU_rRNA_bacteria links to Rfam database...	0.22	0.21	0.23	85	945632	297	29	254	14	319
CRW_00789	SSU_rRNA_bacteria links to Rfam database...	0.37	0.37	0.38	165	1137350	293	39	232	22	282
CRW_00795	SSU_rRNA_bacteria links to Rfam database...	0.35	0.35	0.35	138	1152523	307	34	226	47	256
CRW_00849	SSU_rRNA_bacteria links to Rfam database...	0.58	0.58	0.59	271	1117802	215	14	173	28	199
CRW_00997	SSU_rRNA_bacteria links to Rfam database...	0.44	0.42	0.45	197	1135837	260	32	212	16	267
CRW_01153	SSU_rRNA_eukarya links to Rfam database...	0.30	0.30	0.30	151	1606020	397	56	301	40	352
CRW_01171	SSU_rRNA_eukarya links to Rfam database...	0.33	0.33	0.34	167	1593511	375	57	270	48	339
CRW_01300	SSU_rRNA_eukarya links to Rfam database...	0.35	0.34	0.35	177	1693219	370	60	264	46	338
CRW_01484	5S_rRNA links to Rfam database...	0.19	0.18	0.22	7	7471	26	2	23	1	32
CRW_01485	5S_rRNA links to Rfam database...	0.20	0.18	0.23	7	7472	24	2	22	0	32
CRW_01487	5S_rRNA links to Rfam database...	0.21	0.17	0.26	7	7476	20	2	18	0	34
CRW_01489	5S_rRNA links to Rfam database...	0.44	0.44	0.45	17	7465	23	2	19	2	22
CRW_01491	5S_rRNA links to Rfam database...	0.74	0.65	0.85	28	8352	6	0	5	1	15
CRW_01492	5S_rRNA links to Rfam database...	0.76	0.74	0.78	31	7586	14	0	9	5	11
CRW_01494	5S_rRNA links to Rfam database...	0.74	0.70	0.78	28	7104	9	0	8	1	12
CRW_01497	5S_rRNA links to Rfam database...	0.87	0.80	0.94	32	7106	5	0	2	3	8
CRW_01498	5S_rRNA links to Rfam database...	0.93	0.88	0.97	38	8089	2	0	1	1	5
CRW_01499	5S_rRNA links to Rfam database...	0.35	0.34	0.36	14	7962	26	1	24	1	27
CRW_01500	5S_rRNA links to Rfam database...	0.89	0.84	0.94	32	7716	5	0	2	3	6
CRW_01501	5S_rRNA links to Rfam database...	0.60	0.60	0.60	27	8470	21	1	17	3	18
CRW_01508	5S_rRNA links to Rfam database...	0.90	0.86	0.95	36	7963	7	0	2	5	6
CRW_01532	5S_rRNA links to Rfam database...	0.78	0.76	0.80	28	7105	12	0	7	5	9
CRW_01533	5S_rRNA links to Rfam database...	0.79	0.78	0.81	29	7104	12	0	7	5	8
CRW_01534	5S_rRNA links to Rfam database...	0.79	0.78	0.81	29	7104	11	0	7	4	8
CRW_01535	5S_rRNA links to Rfam database...	0.94	0.89	1.00	33	7107	3	0	0	3	4
CRW_01536	5S_rRNA links to Rfam database...	0.87	0.84	0.91	31	6987	3	0	3	0	6
CRW_01537	5S_rRNA links to Rfam database...	0.66	0.59	0.73	22	7110	13	0	8	5	15
CRW_01539	5S_rRNA links to Rfam database...	0.82	0.81	0.83	30	7104	12	0	6	6	7
CRW_01540	5S_rRNA links to Rfam database...	0.35	0.35	0.36	13	7104	25	2	21	2	24
CRW_01541	5S_rRNA links to Rfam database...	0.90	0.86	0.94	32	7106	4	0	2	2	5
CRW_01542	5S_rRNA links to Rfam database...	0.23	0.24	0.22	9	7099	32	3	29	0	28
CRW_01544	5S_rRNA links to Rfam database...	0.68	0.65	0.71	24	7106	13	0	10	3	13
CRW_01548	5S_rRNA links to Rfam database...	0.92	0.89	0.94	33	6986	4	0	2	2	4
CRW_01555	5S_rRNA links to Rfam database...	0.80	0.76	0.85	28	9012	10	0	5	5	9
CRW_01556	5S_rRNA links to Rfam database...	0.70	0.68	0.74	25	7106	12	0	9	3	12
CRW_01557	5S_rRNA links to Rfam database...	0.79	0.78	0.81	29	7104	10	0	7	3	8
CRW_01559	5S_rRNA links to Rfam database...	0.79	0.78	0.81	29	7224	12	0	7	5	8
CRW_01562	5S_rRNA links to Rfam database...	0.87	0.81	0.94	30	7108	4	0	2	2	7
CRW_01563	5S_rRNA links to Rfam database...	0.21	0.19	0.24	7	6874	23	2	20	1	30
CRW_01566	5S_rRNA links to Rfam database...	0.55	0.54	0.57	20	7105	17	1	14	2	17
CRW_01568	5S_rRNA links to Rfam database...	0.78	0.78	0.78	29	7103	12	0	8	4	8
CRW_01569	5S_rRNA links to Rfam database...	0.79	0.78	0.81	29	7104	11	0	7	4	8
CRW_01570	5S_rRNA links to Rfam database...	0.82	0.78	0.85	29	7106	11	0	5	6	8
CRW_01572	5S_rRNA links to Rfam database...	0.22	0.22	0.23	8	6986	27	6	21	0	29
CRW_01573	5S_rRNA links to Rfam database...	0.92	0.89	0.94	33	7225	5	0	2	3	4
CRW_01578	5S_rRNA links to Rfam database...	0.94	0.89	1.00	33	7107	3	0	0	3	4
CRW_01580	5S_rRNA links to Rfam database...	0.23	0.24	0.23	9	7101	30	4	26	0	28
CRW_01581	5S_rRNA links to Rfam database...	0.30	0.27	0.33	10	7110	21	0	20	1	27
CRW_01583	5S_rRNA links to Rfam database...	0.80	0.76	0.85	28	7107	9	0	5	4	9
CRW_01584	5S_rRNA links to Rfam database...	0.90	0.89	0.92	33	7104	6	0	3	3	4
CRW_01590	5S_rRNA links to Rfam database...	0.24	0.24	0.24	9	7103	28	4	24	0	28
CRW_01593	5S_rRNA links to Rfam database...	0.79	0.78	0.81	29	7104	11	0	7	4	8
CRW_01595	5S_rRNA links to Rfam database...	0.58	0.54	0.63	20	8483	16	0	12	4	17
CRW_01599	5S_rRNA links to Rfam database...	0.23	0.24	0.22	9	7099	32	5	27	0	28
CRW_01603	5S_rRNA links to Rfam database...	0.80	0.76	0.85	28	7107	7	0	5	2	9
CRW_01605	5S_rRNA links to Rfam database...	-0.01	0.00	0.00	0	7103	37	5	32	0	37
CRW_01606	5S_rRNA links to Rfam database...	0.59	0.51	0.68	19	7112	11	0	9	2	18
CRW_01608	5S_rRNA links to Rfam database...	0.50	0.46	0.55	17	8354	18	0	14	4	20
CRW_01616	5S_rRNA links to Rfam database...	0.79	0.78	0.81	29	7104	12	0	7	5	8
CRW_01617	5S_rRNA links to Rfam database...	0.92	0.89	0.94	33	7105	5	0	2	3	4
CRW_01620	5S_rRNA links to Rfam database...	0.88	0.86	0.89	32	6985	6	0	4	2	5
CRW_01621	5S_rRNA links to Rfam database...	0.72	0.70	0.74	26	7105	11	0	9	2	11
CRW_01623	5S_rRNA links to Rfam database...	0.87	0.81	0.94	30	7108	7	0	2	5	7
CRW_01625	5S_rRNA links to Rfam database...	0.86	0.84	0.89	31	7105	6	0	4	2	6
PDB_00012	mir-TAR links to Rfam database...	1.00	1.00	1.00	7	399	3	0	0	3	0
PDB_00070	tRNA links to Rfam database...	0.66	0.67	0.67	16	2826	8	1	7	0	8
PDB_00213	Gammaretro_CES links to Rfam database...	0.92	0.85	1.00	35	5015	0	0	0	0	6
PDB_00229	tRNA links to Rfam database...	0.96	0.91	1.00	21	2754	0	0	0	0	2
PDB_00327	tRNA links to Rfam database...	0.64	0.65	0.63	15	3057	9	0	9	0	8
PDB_00362	tRNA links to Rfam database...	0.98	0.95	1.00	21	2829	0	0	0	0	1
PDB_00402	tRNA links to Rfam database...	0.29	0.30	0.28	7	2750	18	0	18	0	16
PDB_00431	tRNA links to Rfam database...	0.77	0.75	0.79	15	2192	5	0	4	1	5
PDB_00474	tRNA links to Rfam database...	0.96	0.91	1.00	21	2680	0	0	0	0	2
PDB_00553	mir-TAR links to Rfam database...	1.00	1.00	1.00	11	454	0	0	0	0	0
PDB_00571	tRNA links to Rfam database...	0.42	0.36	0.50	9	3303	9	2	7	0	16
PDB_00667	tRNA links to Rfam database...	0.71	0.68	0.75	15	2830	7	4	1	2	7
PDB_00703	SSU_rRNA_bacteria links to Rfam database...	0.57	0.52	0.62	259	1073427	187	20	139	28	236
PDB_00741	Entero_5_CRE links to Rfam database...	0.87	0.76	1.00	13	690	0	0	0	0	4
PDB_00810	s2m links to Rfam database...	0.87	0.76	1.00	13	1068	0	0	0	0	4
PDB_00828	Purine links to Rfam database...	0.88	0.78	1.00	21	2464	0	0	0	0	6
PDB_00829	Purine links to Rfam database...	0.86	0.75	1.00	18	2260	0	0	0	0	6
PDB_00854	SSU_rRNA_bacteria links to Rfam database...	0.58	0.56	0.60	298	1500283	247	21	176	50	237
PDB_00876	HIV_FE links to Rfam database...	0.97	0.95	1.00	19	971	0	0	0	0	1
PDB_01002	tRNA links to Rfam database...	0.95	0.90	1.00	19	2756	2	0	0	2	2
PDB_01020	Purine links to Rfam database...	0.86	0.74	1.00	17	2261	1	0	0	1	6
PDB_01050	UnaL2 links to Rfam database...	0.92	0.85	1.00	11	619	2	0	0	2	2
PDB_01053	tRNA links to Rfam database...	0.97	0.94	1.00	15	1363	0	0	0	0	1
PDB_01073	SAM links to Rfam database...	0.86	0.74	1.00	25	4346	1	0	0	1	9
PDB_01088	SSU_rRNA_bacteria links to Rfam database...	0.33	0.32	0.35	176	1470965	353	46	283	24	371
PDB_01103	SSU_rRNA_bacteria links to Rfam database...	0.63	0.60	0.67	337	1606027	197	18	146	33	225
PDB_01105	SSU_rRNA_bacteria links to Rfam database...	0.57	0.54	0.60	289	1433488	229	24	170	35	251
PDB_01114	TPP links to Rfam database...	0.48	0.41	0.58	11	2831	8	0	8	0	16
PDB_01120	SSU_rRNA_bacteria links to Rfam database...	0.43	0.40	0.46	211	1204672	264	28	217	19	316
PDB_01152	HIV_FS2 links to Rfam database...	0.88	0.79	1.00	11	550	0	0	0	0	3
PDB_01236	ykoK links to Rfam database...	0.73	0.69	0.79	37	11581	13	0	10	3	17
PDB_01273	SSU_rRNA_bacteria links to Rfam database...	0.45	0.43	0.46	211	1117804	273	31	214	28	280
RFA_00389	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	1	0	0	1	0
RFA_00390	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00391	Hammerhead_3 links to Rfam database...	0.93	0.87	1.00	13	1418	2	0	0	2	2
RFA_00396	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	1	0	0	1	1
RFA_00402	Hammerhead_3 links to Rfam database...	0.33	0.33	0.33	5	1416	11	0	10	1	10
RFA_00409	Hammerhead_3 links to Rfam database...	0.62	0.60	0.64	9	1417	6	1	4	1	6
RFA_00416	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1471	3	0	0	3	1
RFA_00433	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00434	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00436	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00440	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1470	2	0	0	2	0
RFA_00442	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00444	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1525	1	0	0	1	0
RFA_00583	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4935	13	0	0	13	0
RFA_00584	Y_RNA links to Rfam database...	0.87	0.87	0.87	13	2911	13	0	2	11	2
RFA_00585	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4836	11	0	0	11	0
RFA_00586	Y_RNA links to Rfam database...	0.97	0.93	1.00	14	3902	10	0	0	10	1
RFA_00587	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4836	8	0	0	8	0
RFA_00588	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4545	13	0	0	13	0
RFA_00589	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4356	17	0	0	17	0
RFA_00594	Y_RNA links to Rfam database...	0.90	0.87	0.93	13	2761	11	0	1	10	2
RFA_00596	Y_RNA links to Rfam database...	0.00	0.00	0.00	0	5982	25	5	8	12	15
RFA_00599	Telomerase-vert links to Rfam database...	0.72	0.72	0.71	80	101363	56	10	22	24	31
RFA_00601	Telomerase-vert links to Rfam database...	0.49	0.52	0.46	59	99108	82	28	40	14	55
RFA_00602	Telomerase-vert links to Rfam database...	0.66	0.68	0.64	79	101352	64	17	27	20	37
RFA_00658	Hammerhead_1 links to Rfam database...	0.59	0.50	0.70	7	1118	5	0	3	2	7
RFA_00664	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	980	11	0	10	1	14
RFA_00667	Hammerhead_1 links to Rfam database...	0.23	0.21	0.27	3	979	8	1	7	0	11
RFA_00668	Hammerhead_1 links to Rfam database...	0.36	0.36	0.38	5	977	8	0	8	0	9
RFA_00672	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	897	6	0	6	0	13
RFA_00673	Hammerhead_1 links to Rfam database...	0.35	0.29	0.44	4	1119	6	0	5	1	10
RFA_00674	Hammerhead_1 links to Rfam database...	0.23	0.21	0.27	3	1117	8	0	8	0	11
RFA_00675	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	980	11	0	10	1	14
RFA_00677	Hammerhead_1 links to Rfam database...	0.36	0.36	0.38	5	977	9	0	8	1	9
RFA_00678	Hammerhead_1 links to Rfam database...	0.43	0.29	0.67	4	940	2	0	2	0	10
RFA_00680	Hammerhead_1 links to Rfam database...	0.69	0.64	0.75	9	1116	6	0	3	3	5
RFA_00704	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	988	3	0	2	1	14
RFA_00707	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	1028	7	1	6	0	14
RFA_00715	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	933	13	0	13	0	14
RFA_00717	Hammerhead_1 links to Rfam database...	0.59	0.57	0.62	8	890	5	0	5	0	6
RFA_00730	s2m links to Rfam database...	0.69	0.67	0.73	8	892	4	1	2	1	4
RFA_00731	s2m links to Rfam database...	1.00	1.00	1.00	12	891	1	0	0	1	0
RFA_00733	s2m links to Rfam database...	1.00	1.00	1.00	12	891	1	0	0	1	0
RFA_00734	s2m links to Rfam database...	0.78	0.75	0.82	9	892	3	0	2	1	3
RFA_00736	s2m links to Rfam database...	1.00	1.00	1.00	12	891	1	0	0	1	0
RFA_00737	s2m links to Rfam database...	1.00	1.00	1.00	12	891	1	0	0	1	0
RFA_00745	s2m links to Rfam database...	1.00	1.00	1.00	12	934	1	0	0	1	0
RFA_00749	s2m links to Rfam database...	1.00	1.00	1.00	12	891	1	0	0	1	0
RFA_00758	s2m links to Rfam database...	0.96	0.92	1.00	11	892	0	0	0	0	1
RFA_00762	s2m links to Rfam database...	0.66	0.67	0.67	8	891	4	0	4	0	4
RFA_00763	s2m links to Rfam database...	1.00	1.00	1.00	12	891	0	0	0	0	0
RFA_00764	s2m links to Rfam database...	1.00	1.00	1.00	12	891	1	0	0	1	0
RFA_00765	s2m links to Rfam database...	1.00	1.00	1.00	12	891	1	0	0	1	0
RFA_00786	Gammaretro_CES links to Rfam database...	0.64	0.66	0.64	21	5017	12	2	10	0	11
RFA_00791	Gammaretro_CES links to Rfam database...	0.95	0.91	1.00	29	5122	1	0	0	1	3
RFA_00792	Gammaretro_CES links to Rfam database...	0.95	0.94	0.97	30	5019	2	0	1	1	2
RFA_00801	Gammaretro_CES links to Rfam database...	0.81	0.78	0.83	25	5020	6	0	5	1	7
SPR_00007	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00009	tRNA links to Rfam database...	-0.01	0.00	0.00	0	2832	18	0	18	0	20
SPR_00010	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00012	tRNA links to Rfam database...	0.23	0.25	0.23	5	2828	17	2	15	0	15
SPR_00013	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	0	0	0	0	0
SPR_00016	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00017	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00025	tRNA links to Rfam database...	0.66	0.65	0.68	13	2907	7	0	6	1	7
SPR_00026	tRNA links to Rfam database...	0.68	0.71	0.65	15	2903	9	0	8	1	6
SPR_00027	tRNA links to Rfam database...	0.90	0.86	0.95	18	2907	3	0	1	2	3
SPR_00036	tRNA links to Rfam database...	0.89	0.80	1.00	16	2759	1	0	0	1	4
SPR_00045	tRNA links to Rfam database...	0.95	0.95	0.95	21	2828	1	0	1	0	1
SPR_00064	tRNA links to Rfam database...	0.55	0.57	0.55	12	2828	10	2	8	0	9
SPR_00065	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00066	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00068	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00070	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00074	tRNA links to Rfam database...	0.89	0.80	1.00	16	2834	1	0	0	1	4
SPR_00079	tRNA links to Rfam database...	1.00	1.00	1.00	19	2466	1	0	0	1	0
SPR_00086	tRNA links to Rfam database...	0.54	0.57	0.52	12	2827	11	4	7	0	9
SPR_00087	tRNA links to Rfam database...	0.47	0.50	0.45	10	2828	12	4	8	0	10
SPR_00088	tRNA links to Rfam database...	0.47	0.50	0.45	10	2828	12	4	8	0	10
SPR_00089	tRNA links to Rfam database...	0.47	0.50	0.45	10	2828	12	4	8	0	10
SPR_00090	tRNA links to Rfam database...	0.37	0.40	0.35	8	2827	15	4	11	0	12
SPR_00091	tRNA links to Rfam database...	0.47	0.50	0.45	10	2828	12	4	8	0	10
SPR_00095	tRNA links to Rfam database...	0.51	0.52	0.50	11	2828	11	4	7	0	10
SPR_00111	tRNA links to Rfam database...	0.98	0.95	1.00	20	2681	0	0	0	0	1
SPR_00112	tRNA links to Rfam database...	1.00	1.00	1.00	21	2680	1	0	0	1	0
SPR_00115	tRNA links to Rfam database...	0.87	0.76	1.00	16	2685	0	0	0	0	5
SPR_00117	tRNA links to Rfam database...	0.67	0.71	0.63	15	2826	9	1	8	0	6
SPR_00139	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	1	0	0	1	0
SPR_00153	tRNA links to Rfam database...	0.37	0.38	0.36	8	2904	14	3	11	0	13
SPR_00155	tRNA links to Rfam database...	0.50	0.52	0.48	11	2903	12	3	9	0	10
SPR_00156	tRNA links to Rfam database...	0.48	0.52	0.44	11	2901	14	5	9	0	10
SPR_00176	tRNA links to Rfam database...	0.51	0.55	0.48	11	2827	12	2	10	0	9
SPR_00177	tRNA links to Rfam database...	0.55	0.57	0.55	12	2828	10	3	7	0	9
SPR_00178	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00191	tRNA links to Rfam database...	0.18	0.19	0.19	4	2829	17	4	13	0	17
SPR_00200	tRNA links to Rfam database...	0.74	0.76	0.73	16	2828	6	3	3	0	5
SPR_00224	tRNA links to Rfam database...	0.45	0.50	0.42	10	3717	19	5	9	5	10
SPR_00271	tRNA links to Rfam database...	0.52	0.57	0.48	12	2825	13	3	10	0	9
SPR_00273	tRNA links to Rfam database...	0.30	0.33	0.28	7	2825	18	2	16	0	14
SPR_00276	tRNA links to Rfam database...	0.98	0.95	1.00	20	2906	0	0	0	0	1
SPR_00277	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00294	tRNA links to Rfam database...	0.57	0.57	0.57	12	2829	9	2	7	0	9
SPR_00295	tRNA links to Rfam database...	0.98	0.95	1.00	20	2755	1	0	0	1	1
SPR_00314	tRNA links to Rfam database...	0.98	0.95	1.00	20	2906	2	0	0	2	1
SPR_00315	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	2	0	0	2	0
SPR_00317	tRNA links to Rfam database...	0.52	0.55	0.50	11	2904	11	5	6	0	9
SPR_00318	tRNA links to Rfam database...	0.98	0.95	1.00	20	2906	2	0	0	2	1
SPR_00321	tRNA links to Rfam database...	0.98	0.95	1.00	20	2983	0	0	0	0	1
SPR_00333	tRNA links to Rfam database...	0.98	0.95	1.00	20	2755	0	0	0	0	1
SPR_00352	tRNA links to Rfam database...	0.73	0.76	0.70	16	2903	7	3	4	0	5
SPR_00353	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00357	tRNA links to Rfam database...	0.98	0.95	1.00	20	2906	0	0	0	0	1
SPR_00358	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00370	tRNA links to Rfam database...	-0.01	0.00	0.00	0	2759	16	1	15	0	21
SPR_00386	tRNA links to Rfam database...	0.75	0.75	0.75	15	4166	9	0	5	4	5
SPR_00414	tRNA links to Rfam database...	0.95	0.90	1.00	19	3551	4	0	0	4	2
SPR_00415	tRNA links to Rfam database...	0.46	0.48	0.45	10	3548	16	3	9	4	11
SPR_00417	tRNA links to Rfam database...	0.65	0.64	0.67	14	3549	11	0	7	4	8
SPR_00418	tRNA links to Rfam database...	0.65	0.64	0.67	14	3549	11	0	7	4	8
SPR_00434	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00435	tRNA links to Rfam database...	0.73	0.71	0.75	15	2830	5	0	5	0	6
SPR_00436	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	2	0	0	2	1
SPR_00437	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	2	0	0	2	0
SPR_00438	tRNA links to Rfam database...	0.98	0.95	1.00	20	2755	0	0	0	0	1
SPR_00452	tRNA links to Rfam database...	0.74	0.76	0.73	16	2828	6	3	3	0	5
SPR_00455	tRNA links to Rfam database...	0.27	0.29	0.27	6	2828	16	5	11	0	15
SPR_00456	tRNA links to Rfam database...	0.53	0.57	0.50	12	2826	15	6	6	3	9
SPR_00476	tRNA links to Rfam database...	0.95	0.90	1.00	19	2756	0	0	0	0	2
SPR_00479	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00482	tRNA links to Rfam database...	0.71	0.71	0.71	15	2680	6	0	6	0	6
SPR_00483	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00487	tRNA links to Rfam database...	0.68	0.68	0.68	15	2679	7	0	7	0	7
SPR_00493	tRNA links to Rfam database...	0.68	0.68	0.68	15	2753	7	2	5	0	7
SPR_00496	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	0	0	0	0	0
SPR_00497	tRNA links to Rfam database...	0.95	0.90	1.00	19	2756	0	0	0	0	2
SPR_00502	tRNA links to Rfam database...	0.83	0.81	0.85	17	2906	3	0	3	0	4
SPR_00504	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	0	0	0	0	0
SPR_00505	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00506	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00509	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00512	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00513	tRNA links to Rfam database...	0.97	0.95	1.00	19	2907	0	0	0	0	1
SPR_00518	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00548	tRNA links to Rfam database...	0.30	0.33	0.28	7	3378	18	0	18	0	14
SPR_00557	tRNA links to Rfam database...	0.41	0.43	0.41	9	2828	13	1	12	0	12
SPR_00561	tRNA links to Rfam database...	0.39	0.43	0.36	9	2825	16	1	15	0	12
SPR_00590	tRNA links to Rfam database...	0.53	0.60	0.48	12	2978	13	4	9	0	8
SPR_00593	tRNA links to Rfam database...	0.65	0.63	0.67	12	2757	7	1	5	1	7
SPR_00595	tRNA links to Rfam database...	0.75	0.71	0.79	15	2756	4	2	2	0	6
SPR_00598	tRNA links to Rfam database...	0.83	0.81	0.85	17	2983	5	0	3	2	4
SPR_00610	tRNA links to Rfam database...	0.53	0.57	0.50	12	2532	12	0	12	0	9
SPR_00620	tRNA links to Rfam database...	0.77	0.81	0.74	17	2980	7	4	2	1	4
SPR_00721	tRNA links to Rfam database...	0.98	0.95	1.00	20	2906	2	0	0	2	1
SPR_00722	tRNA links to Rfam database...	0.78	0.80	0.76	16	2905	5	4	1	0	4
SPR_00758	tRNA links to Rfam database...	0.30	0.33	0.28	7	2978	18	6	12	0	14
SPR_00760	tRNA links to Rfam database...	0.88	0.90	0.86	19	3548	5	0	3	2	2
SPR_00777	tRNA links to Rfam database...	0.90	0.85	0.94	17	2610	1	0	1	0	3
SPR_00867	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	2	0	0	2	0
SPR_00868	tRNA links to Rfam database...	0.77	0.81	0.74	17	2903	7	0	6	1	4
SPR_00943	tRNA links to Rfam database...	0.82	0.80	0.84	16	2537	3	0	3	0	4
SPR_00957	tRNA links to Rfam database...	0.78	0.76	0.80	16	2983	5	0	4	1	5
SPR_01040	tRNA links to Rfam database...	0.77	0.81	0.74	17	2752	7	0	6	1	4
SPR_01088	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	2	0	0	2	0
SPR_01095	tRNA links to Rfam database...	0.76	0.76	0.76	16	2829	6	0	5	1	5
SPR_01106	tRNA links to Rfam database...	0.52	0.52	0.52	11	2535	10	2	8	0	10
SPR_01117	tRNA links to Rfam database...	0.76	0.76	0.76	16	2982	6	0	5	1	5
SPR_01157	tRNA links to Rfam database...	0.77	0.81	0.74	17	2752	7	0	6	1	4
SRP_00006	Metazoa_SRP links to Rfam database...	0.84	0.83	0.86	84	45655	17	3	11	3	17
SRP_00008	Bacteria_small_SRP links to Rfam database...	0.58	0.60	0.58	15	2900	13	0	11	2	10
SRP_00011	Plant_SRP links to Rfam database...	0.63	0.62	0.64	64	46260	36	2	34	0	40
SRP_00015	Plant_SRP links to Rfam database...	0.83	0.80	0.87	79	46269	19	0	12	7	20
SRP_00020	Bacteria_small_SRP links to Rfam database...	0.86	0.88	0.85	29	5531	5	1	4	0	4
SRP_00024	Bacteria_large_SRP links to Rfam database...	0.37	0.38	0.36	33	37584	58	8	50	0	54
SRP_00026	Bacteria_large_SRP links to Rfam database...	0.68	0.69	0.66	61	36764	37	3	28	6	27
SRP_00027	Bacteria_large_SRP links to Rfam database...	0.77	0.74	0.80	64	37048	18	0	16	2	23
SRP_00030	Bacteria_large_SRP links to Rfam database...	0.78	0.81	0.76	71	36762	26	5	18	3	17
SRP_00031	Bacteria_large_SRP links to Rfam database...	0.68	0.70	0.67	62	36222	34	4	27	3	27
SRP_00037	Bacteria_large_SRP links to Rfam database...	0.43	0.44	0.43	38	36497	50	9	41	0	49
SRP_00038	Bacteria_small_SRP links to Rfam database...	0.18	0.18	0.19	6	5019	25	2	23	0	27
SRP_00042	Bacteria_small_SRP links to Rfam database...	0.42	0.44	0.41	11	3978	18	0	16	2	14
SRP_00044	Bacteria_small_SRP links to Rfam database...	0.89	0.88	0.90	28	6074	6	1	2	3	4
SRP_00046	Bacteria_small_SRP links to Rfam database...	0.97	0.97	0.97	31	4721	2	0	1	1	1
SRP_00050	Metazoa_SRP links to Rfam database...	0.96	0.93	0.99	92	44757	3	0	1	2	7
SRP_00051	Bacteria_small_SRP links to Rfam database...	0.30	0.30	0.30	9	5430	23	2	19	2	21
SRP_00054	Bacteria_small_SRP links to Rfam database...	0.22	0.22	0.23	7	5534	24	3	21	0	25
SRP_00057	Bacteria_small_SRP links to Rfam database...	0.69	0.69	0.71	24	6294	11	1	9	1	11
SRP_00058	Bacteria_small_SRP links to Rfam database...	0.90	0.91	0.89	31	5743	8	1	3	4	3
SRP_00066	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	45357	94	10	84	0	100
SRP_00072	Bacteria_small_SRP links to Rfam database...	0.30	0.31	0.30	9	6298	22	1	20	1	20
SRP_00074	Bacteria_small_SRP links to Rfam database...	0.16	0.17	0.16	5	6524	30	3	23	4	24
SRP_00075	Bacteria_small_SRP links to Rfam database...	0.59	0.59	0.61	20	5532	15	2	11	2	14
SRP_00077	Bacteria_small_SRP links to Rfam database...	0.22	0.22	0.23	8	6635	27	2	25	0	29
SRP_00081	Bacteria_small_SRP links to Rfam database...	0.69	0.74	0.64	23	5529	13	1	12	0	8
SRP_00084	Bacteria_small_SRP links to Rfam database...	0.87	0.88	0.86	30	5425	5	1	4	0	4
SRP_00086	Metazoa_SRP links to Rfam database...	0.59	0.60	0.58	60	44150	44	3	40	1	40
SRP_00088	Bacteria_large_SRP links to Rfam database...	0.68	0.71	0.66	63	34096	32	3	29	0	26
SRP_00089	Bacteria_large_SRP links to Rfam database...	0.75	0.76	0.75	68	35687	23	1	22	0	22
SRP_00090	Bacteria_large_SRP links to Rfam database...	0.31	0.31	0.32	28	35423	61	5	55	1	62
SRP_00094	Bacteria_small_SRP links to Rfam database...	0.84	0.88	0.81	21	4069	5	1	4	0	3
SRP_00095	Bacteria_small_SRP links to Rfam database...	0.85	0.88	0.81	22	3978	5	1	4	0	3
SRP_00098	Bacteria_small_SRP links to Rfam database...	0.69	0.70	0.68	26	6403	14	1	11	2	11
SRP_00102	Metazoa_SRP links to Rfam database...	0.77	0.74	0.79	75	44456	23	1	19	3	26
SRP_00103	Metazoa_SRP links to Rfam database...	0.79	0.77	0.81	79	45354	20	2	16	2	23
SRP_00105	Bacteria_small_SRP links to Rfam database...	0.28	0.29	0.28	10	5529	26	1	25	0	24
SRP_00107	Bacteria_small_SRP links to Rfam database...	0.12	0.16	0.11	3	3627	27	5	20	2	16
SRP_00121	Bacteria_small_SRP links to Rfam database...	0.80	0.80	0.80	20	4253	6	0	5	1	5
SRP_00128	Bacteria_small_SRP links to Rfam database...	0.76	0.81	0.73	29	6746	11	1	10	0	7
SRP_00132	Bacteria_small_SRP links to Rfam database...	0.69	0.72	0.66	21	4819	14	0	11	3	8
SRP_00134	Bacteria_large_SRP links to Rfam database...	0.52	0.55	0.50	16	5963	20	3	13	4	13
SRP_00141	Bacteria_small_SRP links to Rfam database...	0.94	0.93	0.95	38	6288	3	1	1	1	3
SRP_00152	Plant_SRP links to Rfam database...	0.70	0.68	0.71	70	45655	30	1	27	2	33
SRP_00161	Bacteria_small_SRP links to Rfam database...	0.35	0.36	0.35	8	2827	15	3	12	0	14
SRP_00162	Bacteria_small_SRP links to Rfam database...	0.89	0.91	0.88	21	2902	4	0	3	1	2
SRP_00163	Bacteria_small_SRP links to Rfam database...	0.36	0.38	0.34	10	3457	19	4	15	0	16
SRP_00164	Bacteria_small_SRP links to Rfam database...	0.93	0.94	0.92	33	6867	3	1	2	0	2
SRP_00170	Bacteria_small_SRP links to Rfam database...	0.55	0.56	0.54	14	4069	13	0	12	1	11
SRP_00171	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	45353	98	15	83	0	88
SRP_00173	Bacteria_large_SRP links to Rfam database...	0.79	0.80	0.78	72	38134	26	1	19	6	18
SRP_00174	Bacteria_large_SRP links to Rfam database...	0.80	0.81	0.79	70	38692	24	4	15	5	16
SRP_00178	Plant_SRP links to Rfam database...	0.33	0.31	0.35	32	45661	60	2	58	0	70
SRP_00179	Plant_SRP links to Rfam database...	0.76	0.74	0.78	78	45956	26	4	18	4	27
SRP_00181	Plant_SRP links to Rfam database...	0.31	0.29	0.33	30	45964	62	2	60	0	72
SRP_00182	Plant_SRP links to Rfam database...	0.73	0.71	0.74	72	45959	28	3	22	3	29
SRP_00184	Plant_SRP links to Rfam database...	0.33	0.32	0.33	32	45960	66	5	59	2	68
SRP_00188	Plant_SRP links to Rfam database...	0.22	0.22	0.24	17	31053	55	3	52	0	62
SRP_00194	Bacteria_small_SRP links to Rfam database...	0.77	0.81	0.74	17	3217	8	0	6	2	4
SRP_00200	Bacteria_small_SRP links to Rfam database...	0.85	0.86	0.84	31	6866	7	1	5	1	5
SRP_00209	Bacteria_small_SRP links to Rfam database...	0.76	0.78	0.75	21	4628	7	1	6	0	6
SRP_00213	Bacteria_small_SRP links to Rfam database...	0.66	0.68	0.65	17	4160	11	1	8	2	8
SRP_00215	Bacteria_small_SRP links to Rfam database...	0.82	0.80	0.83	20	3216	4	0	4	0	5
SRP_00227	Bacteria_small_SRP links to Rfam database...	0.92	0.94	0.91	29	5119	3	1	2	0	2
SRP_00228	Metazoa_SRP links to Rfam database...	0.96	0.95	0.97	90	45358	11	0	3	8	5
SRP_00231	Bacteria_small_SRP links to Rfam database...	0.87	0.88	0.86	30	5425	5	1	4	0	4
SRP_00233	Bacteria_small_SRP links to Rfam database...	1.00	1.00	1.00	33	5118	0	0	0	0	0
SRP_00234	Bacteria_large_SRP links to Rfam database...	0.80	0.79	0.81	68	36231	22	0	16	6	18
SRP_00243	Bacteria_small_SRP links to Rfam database...	0.97	0.94	1.00	29	5122	1	0	0	1	2
SRP_00244	Bacteria_small_SRP links to Rfam database...	0.51	0.51	0.51	20	6864	19	3	16	0	19
SRP_00250	Bacteria_small_SRP links to Rfam database...	0.78	0.81	0.76	29	6748	11	1	8	2	7
SRP_00251	Bacteria_small_SRP links to Rfam database...	0.75	0.78	0.72	28	6982	11	1	10	0	8
SRP_00266	Bacteria_small_SRP links to Rfam database...	0.68	0.62	0.75	18	4632	7	0	6	1	11
SRP_00268	Bacteria_small_SRP links to Rfam database...	0.49	0.48	0.50	13	4160	13	4	9	0	14
SRP_00269	Bacteria_small_SRP links to Rfam database...	0.59	0.61	0.57	20	5015	15	3	12	0	13
SRP_00270	Bacteria_small_SRP links to Rfam database...	0.43	0.45	0.41	14	4622	20	2	18	0	17
SRP_00271	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	3215	25	1	24	0	24
SRP_00273	Bacteria_small_SRP links to Rfam database...	0.89	0.90	0.88	36	6745	6	1	4	1	4
SRP_00274	Bacteria_small_SRP links to Rfam database...	0.93	0.95	0.92	36	6864	3	1	2	0	2
SRP_00295	Bacteria_small_SRP links to Rfam database...	0.96	0.97	0.95	37	6864	3	1	1	1	1
SRP_00303	Bacteria_small_SRP links to Rfam database...	0.81	0.84	0.77	27	6635	8	1	7	0	5
SRP_00308	Bacteria_large_SRP links to Rfam database...	0.72	0.73	0.72	64	36226	26	2	23	1	24
SRP_00310	Bacteria_small_SRP links to Rfam database...	0.87	0.87	0.87	20	2903	4	0	3	1	3
SRP_00312	Bacteria_small_SRP links to Rfam database...	0.38	0.37	0.40	10	4161	15	1	14	0	17
SRP_00315	Bacteria_small_SRP links to Rfam database...	0.87	0.87	0.87	20	2903	3	0	3	0	3
SRP_00317	Metazoa_SRP links to Rfam database...	0.94	0.90	0.99	88	45061	8	0	1	7	10
SRP_00318	Bacteria_small_SRP links to Rfam database...	0.87	0.87	0.87	20	2980	3	0	3	0	3
SRP_00325	Bacteria_small_SRP links to Rfam database...	0.98	0.97	1.00	32	4339	0	0	0	0	1
SRP_00326	Bacteria_small_SRP links to Rfam database...	0.53	0.55	0.52	17	5017	16	3	13	0	14
SRP_00333	Bacteria_small_SRP links to Rfam database...	0.86	0.85	0.88	29	5118	4	0	4	0	5
SRP_00335	Bacteria_large_SRP links to Rfam database...	0.31	0.44	0.22	17	35169	79	27	32	20	22
SRP_00337	Bacteria_large_SRP links to Rfam database...	0.75	0.75	0.76	68	35421	24	2	20	2	23
SRP_00338	Bacteria_small_SRP links to Rfam database...	0.97	0.97	0.97	35	5424	1	0	1	0	1
SRP_00341	Bacteria_small_SRP links to Rfam database...	0.47	0.48	0.45	15	4720	18	0	18	0	16
SRP_00342	Bacteria_small_SRP links to Rfam database...	0.59	0.60	0.58	15	3979	16	1	10	5	10
SRP_00347	Metazoa_SRP links to Rfam database...	0.78	0.78	0.79	75	46570	23	4	16	3	21
SRP_00350	Bacteria_small_SRP links to Rfam database...	0.85	0.85	0.85	23	3889	5	1	3	1	4
SRP_00356	Bacteria_small_SRP links to Rfam database...	0.79	0.73	0.85	22	5024	4	0	4	0	8
SRP_00357	Bacteria_small_SRP links to Rfam database...	0.96	0.97	0.95	35	5319	2	1	1	0	1
SRP_00358	Bacteria_small_SRP links to Rfam database...	0.96	0.97	0.94	34	6292	2	1	1	0	1
SRP_00367	Bacteria_small_SRP links to Rfam database...	0.96	0.97	0.94	34	6750	2	1	1	0	1
SRP_00368	Metazoa_SRP links to Rfam database...	0.92	0.90	0.95	88	43863	9	0	5	4	10
SRP_00369	Bacteria_small_SRP links to Rfam database...	0.87	0.89	0.86	31	5742	6	1	4	1	4
SRP_00383	Bacteria_small_SRP links to Rfam database...	0.12	0.13	0.13	3	3217	20	4	16	0	21
TMR_00017	tmRNA links to Rfam database...	0.51	0.49	0.53	50	67067	50	10	34	6	52
TMR_00018	tmRNA links to Rfam database...	0.37	0.37	0.37	34	64527	63	11	48	4	58
TMR_00038	tmRNA links to Rfam database...	0.22	0.21	0.23	23	71154	80	9	67	4	87
TMR_00042	tmRNA links to Rfam database...	0.35	0.35	0.36	34	62740	64	3	58	3	64
TMR_00046	tmRNA links to Rfam database...	0.28	0.28	0.28	27	62740	72	11	57	4	69
TMR_00048	tmRNA links to Rfam database...	0.23	0.24	0.23	23	64880	83	15	62	6	72
TMR_00080	tmRNA links to Rfam database...	0.41	0.40	0.42	38	70409	53	14	39	0	58
TMR_00082	tmRNA links to Rfam database...	0.70	0.68	0.71	65	67805	31	8	18	5	31
TMR_00123	tmRNA links to Rfam database...	0.40	0.39	0.41	39	66335	61	11	45	5	62
TMR_00137	tmRNA links to Rfam database...	0.22	0.21	0.22	19	60990	74	9	57	8	70
TMR_00142	tmRNA links to Rfam database...	0.50	0.51	0.50	52	70771	65	10	43	12	50
TMR_00207	tmRNA links to Rfam database...	0.29	0.28	0.30	29	72294	71	7	60	4	74
TMR_00257	tmRNA links to Rfam database...	0.12	0.11	0.12	11	67072	82	7	71	4	87
TMR_00271	tmRNA links to Rfam database...	0.64	0.60	0.67	55	64179	37	6	21	10	36
TMR_00332	tmRNA links to Rfam database...	0.49	0.43	0.54	43	67082	41	7	29	5	56
TMR_00366	tmRNA links to Rfam database...	0.51	0.51	0.52	51	67798	58	12	35	11	49
TMR_00378	tmRNA links to Rfam database...	0.26	0.25	0.28	24	67810	73	14	48	11	73
TMR_00399	tmRNA links to Rfam database...	0.35	0.34	0.36	32	64892	62	12	44	6	62
TMR_00404	tmRNA links to Rfam database...	0.37	0.40	0.35	37	67422	80	26	43	11	55
TMR_00427	tmRNA links to Rfam database...	0.34	0.32	0.36	31	67441	61	13	43	5	66
TMR_00443	tmRNA links to Rfam database...	0.54	0.51	0.57	53	67068	47	11	29	7	51
TMR_00451	tmRNA links to Rfam database...	0.18	0.19	0.18	17	63449	84	20	60	4	72
TMR_00458	tmRNA links to Rfam database...	0.46	0.46	0.46	43	63453	57	9	41	7	50
TMR_00469	tmRNA links to Rfam database...	0.53	0.53	0.52	53	64519	52	17	31	4	47
TMR_00472	tmRNA links to Rfam database...	0.42	0.40	0.44	39	64532	60	8	41	11	58
TMR_00519	tmRNA links to Rfam database...	0.39	0.39	0.40	37	63098	66	12	43	11	58
TMR_00520	tmRNA links to Rfam database...	0.52	0.52	0.53	51	63094	55	14	31	10	48
TMR_00522	tmRNA links to Rfam database...	0.39	0.39	0.40	38	63095	66	13	44	9	59
TMR_00528	tmRNA links to Rfam database...	0.30	0.29	0.32	28	63102	70	16	44	10	69
TMR_00540	tmRNA links to Rfam database...	0.44	0.41	0.47	43	73444	60	11	38	11	61
TMR_00568	tmRNA links to Rfam database...	0.36	0.34	0.38	34	60636	62	4	52	6	65
TMR_00571	tmRNA links to Rfam database...	0.66	0.61	0.71	60	60642	38	2	22	14	39
TMR_00580	tmRNA links to Rfam database...	0.68	0.64	0.72	64	60637	36	2	23	11	36
TMR_00584	tmRNA links to Rfam database...	0.59	0.57	0.61	55	60985	47	3	32	12	42
TMR_00586	tmRNA links to Rfam database...	0.50	0.49	0.51	48	60980	57	8	39	10	49
TMR_00616	tmRNA links to Rfam database...	0.41	0.40	0.41	40	67064	62	12	45	5	59
TMR_00699	tmRNA links to Rfam database...	0.49	0.44	0.55	45	67079	42	4	33	5	57
TMR_00702	tmRNA links to Rfam database...	0.39	0.36	0.42	36	67075	55	12	38	5	64
TMR_00703	tmRNA links to Rfam database...	0.50	0.49	0.52	49	67433	51	6	40	5	50

^top

Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.

Table of contents:

Overview

Performance plots

Performance of Carnac(20) - scored higher in this pairwise comparison

1. Total counts & total scores for Carnac(20)

2. Individual counts for Carnac(20) [ download as .csv ]

Performance of MaxExpect - scored lower in this pairwise comparison

1. Total counts & total scores for MaxExpect

2. Individual counts for MaxExpect [ download as .csv ]