CompaRNA - on-line benchmarks of RNA structure prediction methods

Laboratory of Structural Bioinformatics @ Adam Mickiewicz University in Poznan

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Overview

Metric	Carnac(20)		UNAFold
MCC	0.518	>	0.497
Average MCC ± 95% Confidence Intervals	0.498 ± 0.023	<	0.610 ± 0.018
Sensitivity	0.301	<	0.491
Positive Predictive Value	0.892	>	0.503
Total TP	21119	<	34481
Total TN	119818013	>	119773179
Total FP	4012	<	37999
Total FP CONTRA	289	<	5340
Total FP INCONS	2262	<	28683
Total FP COMP	1461	<	3976
Total FN	49115	>	35753
P-value	3.56938820447e-08

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Performance plots

Comparison of performance of Carnac(20) and UNAFold. Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data (individual counts for Carnac(20) and UNAFold).
Average Matthews Correlation Coefficients (MCC) with 95% confidence intervals (CIs) were plotted for different RNA families, for which at least 3 members were present in the benchmarking dataset. 'n' denotes the number of MCCs used to calculate the average and CI. See tables below for raw data (individual counts for Carnac(20) and UNAFold).
Comparison of average Matthews Correlation Coefficients (MCCs) for Carnac(20) and UNAFold. The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data (individual counts for Carnac(20) and UNAFold).

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Performance of Carnac(20) - scored higher in this pairwise comparison

1. Total counts & total scores for Carnac(20)

Total Base Pair Counts
Total TP	21119
Total TN	119818013
Total FP	4012
Total FP CONTRA	289
Total FP INCONS	2262
Total FP COMP	1461
Total FN	49115

Total Scores
MCC	0.518
Average MCC ± 95% Confidence Intervals	0.498 ± 0.023
Sensitivity	0.301
Positive Predictive Value	0.892
Nr of predictions	642

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2. Individual counts for Carnac(20) [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00004	RNaseP_bact_a links to Rfam database...	0.51	0.26	1.00	25	47870	0	0	0	0	72
ASE_00005	RNaseP_bact_a links to Rfam database...	0.45	0.21	0.96	25	57944	1	1	0	0	92
ASE_00006	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	47586	0	0	0	0	93
ASE_00007	RNaseP_bact_a links to Rfam database...	0.40	0.17	0.95	19	59665	1	0	1	0	91
ASE_00012	RNaseP_bact_a links to Rfam database...	0.60	0.47	0.77	58	73845	21	1	16	4	65
ASE_00018	RNaseP_bact_a links to Rfam database...	0.53	0.33	0.86	44	80550	8	1	6	1	90
ASE_00020	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	73920	0	0	0	0	126
ASE_00021	RNaseP_bact_a links to Rfam database...	0.47	0.33	0.69	52	104121	28	1	22	5	108
ASE_00022	RNaseP_bact_b links to Rfam database...	0.54	0.33	0.87	41	82981	7	0	6	1	83
ASE_00028	RNaseP_bact_b links to Rfam database...	0.45	0.20	1.00	25	84641	0	0	0	0	101
ASE_00035	RNaseP_bact_a links to Rfam database...	0.50	0.31	0.80	37	70454	12	1	8	3	81
ASE_00037	RNaseP_bact_a links to Rfam database...	0.27	0.07	1.00	8	59332	0	0	0	0	102
ASE_00038	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	53628	0	0	0	0	101
ASE_00040	RNaseP_bact_a links to Rfam database...	0.42	0.17	1.00	23	78980	4	0	0	4	110
ASE_00041	RNaseP_bact_a links to Rfam database...	0.40	0.19	0.84	21	57605	4	0	4	0	87
ASE_00042	RNaseP_bact_a links to Rfam database...	0.25	0.06	1.00	9	90091	0	0	0	0	136
ASE_00044	RNaseP_bact_a links to Rfam database...	0.42	0.20	0.88	21	54591	7	0	3	4	84
ASE_00045	RNaseP_bact_b links to Rfam database...	0.37	0.14	1.00	11	47267	0	0	0	0	69
ASE_00064	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	45451	0	0	0	0	89
ASE_00068	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	37675	0	0	0	0	85
ASE_00074	RNaseP_bact_a links to Rfam database...	0.45	0.21	0.96	25	67870	1	1	0	0	94
ASE_00075	RNaseP_bact_a links to Rfam database...	0.57	0.36	0.89	59	108745	11	1	6	4	103
ASE_00077	RNaseP_bact_a links to Rfam database...	0.34	0.13	0.92	11	45138	1	0	1	0	75
ASE_00078	RNaseP_bact_a links to Rfam database...	0.50	0.25	1.00	21	43050	1	0	0	1	62
ASE_00080	RNaseP_bact_a links to Rfam database...	0.10	0.03	0.31	4	71618	9	0	9	0	119
ASE_00081	RNaseP_bact_a links to Rfam database...	0.15	0.05	0.45	5	49759	7	0	6	1	92
ASE_00082	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	70500	0	0	0	0	116
ASE_00083	RNaseP_bact_a links to Rfam database...	0.29	0.08	1.00	9	62472	0	0	0	0	101
ASE_00084	RNaseP_bact_a links to Rfam database...	0.40	0.16	1.00	16	53612	1	0	0	1	83
ASE_00087	RNaseP_bact_a links to Rfam database...	0.19	0.03	1.00	5	88405	1	0	0	1	139
ASE_00090	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	55611	0	0	0	0	101
ASE_00092	RNaseP_bact_a links to Rfam database...	0.39	0.17	0.90	19	63525	3	0	2	1	94
ASE_00099	RNaseP_bact_a links to Rfam database...	0.45	0.21	0.96	25	64594	1	1	0	0	95
ASE_00104	RNaseP_bact_a links to Rfam database...	0.42	0.19	0.92	23	64236	2	1	1	0	96
ASE_00105	RNaseP_bact_a links to Rfam database...	0.36	0.20	0.67	22	64228	12	0	11	1	89
ASE_00107	RNaseP_bact_a links to Rfam database...	0.54	0.35	0.83	44	73100	10	1	8	1	83
ASE_00114	RNaseP_bact_b links to Rfam database...	0.21	0.10	0.44	8	45433	10	0	10	0	69
ASE_00115	RNaseP_bact_a links to Rfam database...	0.19	0.05	0.71	5	54608	3	0	2	1	96
ASE_00118	RNaseP_bact_a links to Rfam database...	0.33	0.11	1.00	11	60715	1	0	0	1	91
ASE_00119	RNaseP_bact_a links to Rfam database...	0.36	0.13	1.00	14	62821	0	0	0	0	94
ASE_00123	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	38503	0	0	0	0	85
ASE_00125	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	39340	0	0	0	0	88
ASE_00126	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	40470	0	0	0	0	82
ASE_00128	RNaseP_bact_a links to Rfam database...	0.26	0.07	1.00	7	53294	0	0	0	0	93
ASE_00129	RNaseP_bact_a links to Rfam database...	0.30	0.11	0.86	12	62821	2	0	2	0	99
ASE_00131	RNaseP_bact_a links to Rfam database...	0.31	0.09	1.00	8	39332	0	0	0	0	77
ASE_00134	RNaseP_bact_a links to Rfam database...	0.25	0.06	1.00	6	50397	0	0	0	0	89
ASE_00135	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	63190	0	0	0	0	109
ASE_00136	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	48205	0	0	0	0	92
ASE_00137	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	48516	0	0	0	0	98
ASE_00138	RNaseP_bact_a links to Rfam database...	0.22	0.05	1.00	4	40466	0	0	0	0	77
ASE_00140	RNaseP_bact_a links to Rfam database...	0.35	0.14	0.86	18	70855	3	0	3	0	107
ASE_00142	RNaseP_bact_a links to Rfam database...	0.41	0.17	0.95	21	67139	1	1	0	0	101
ASE_00146	RNaseP_bact_a links to Rfam database...	0.40	0.18	0.92	22	70852	2	0	2	0	102
ASE_00153	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	57626	4	1	3	0	73
ASE_00161	RNaseP_bact_b links to Rfam database...	0.61	0.41	0.90	36	53588	4	0	4	0	51
ASE_00163	RNaseP_bact_a links to Rfam database...	0.17	0.04	0.67	4	53295	2	0	2	0	89
ASE_00165	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	52975	0	0	0	0	101
ASE_00170	RNaseP_bact_a links to Rfam database...	0.52	0.27	1.00	25	48803	1	0	0	1	68
ASE_00171	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	48512	4	0	4	0	94
ASE_00172	RNaseP_bact_a links to Rfam database...	0.27	0.08	1.00	8	58988	0	0	0	0	98
ASE_00174	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	61075	0	0	0	0	109
ASE_00175	RNaseP_bact_a links to Rfam database...	0.20	0.05	0.83	5	60025	2	0	1	1	102
ASE_00179	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	44253	0	0	0	0	84
ASE_00180	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	51360	0	0	0	0	100
ASE_00181	RNaseP_bact_a links to Rfam database...	0.22	0.05	1.00	5	57625	0	0	0	0	101
ASE_00182	RNaseP_bact_a links to Rfam database...	0.19	0.04	0.86	6	84248	1	0	1	0	130
ASE_00183	RNaseP_bact_a links to Rfam database...	0.34	0.14	0.80	16	61405	4	0	4	0	97
ASE_00184	RNaseP_bact_a links to Rfam database...	0.33	0.11	1.00	11	54604	1	0	0	1	91
ASE_00185	RNaseP_bact_a links to Rfam database...	0.37	0.14	1.00	18	73518	0	0	0	0	110
ASE_00186	RNaseP_bact_a links to Rfam database...	0.45	0.22	0.94	29	78972	7	1	1	5	103
ASE_00190	RNaseP_bact_b links to Rfam database...	0.29	0.11	0.77	10	45438	6	0	3	3	80
ASE_00197	RNaseP_bact_a links to Rfam database...	0.33	0.12	0.94	17	89235	5	1	0	4	128
ASE_00198	RNaseP_bact_a links to Rfam database...	0.16	0.04	0.67	4	52644	2	0	2	0	98
ASE_00203	RNaseP_bact_a links to Rfam database...	0.35	0.13	1.00	12	46653	0	0	0	0	84
ASE_00212	RNaseP_bact_a links to Rfam database...	0.45	0.24	0.85	35	93920	11	1	5	5	113
ASE_00214	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	56280	0	0	0	0	103
ASE_00215	RNaseP_bact_a links to Rfam database...	0.19	0.07	0.54	7	48503	6	0	6	0	92
ASE_00216	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	39340	0	0	0	0	82
ASE_00217	RNaseP_bact_a links to Rfam database...	0.42	0.19	0.94	17	40452	1	1	0	0	73
ASE_00221	RNaseP_bact_a links to Rfam database...	0.36	0.15	0.89	17	64601	2	0	2	0	100
ASE_00228	RNaseP_bact_a links to Rfam database...	0.41	0.19	0.89	16	46953	3	0	2	1	70
ASE_00229	RNaseP_bact_a links to Rfam database...	0.28	0.08	1.00	7	42479	0	0	0	0	80
ASE_00231	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	47895	0	0	0	0	96
ASE_00232	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	38503	0	0	0	0	84
ASE_00234	RNaseP_bact_a links to Rfam database...	0.38	0.18	0.82	23	75438	6	0	5	1	106
ASE_00238	RNaseP_bact_a links to Rfam database...	0.18	0.04	0.71	5	64254	2	0	2	0	109
ASE_00241	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	43956	0	0	0	0	87
ASE_00242	RNaseP_bact_a links to Rfam database...	0.44	0.21	0.96	23	61051	1	0	1	0	89
ASE_00248	RNaseP_bact_a links to Rfam database...	0.72	0.55	0.94	63	62414	5	0	4	1	51
ASE_00254	RNaseP_bact_a links to Rfam database...	0.54	0.30	0.96	25	36830	1	0	1	0	57
ASE_00255	RNaseP_bact_a links to Rfam database...	0.67	0.55	0.84	71	74606	16	1	13	2	59
ASE_00257	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	51040	0	0	0	0	97
ASE_00263	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	70500	0	0	0	0	120
ASE_00267	RNaseP_bact_a links to Rfam database...	0.46	0.22	1.00	19	45131	1	0	0	1	69
ASE_00270	RNaseP_bact_a links to Rfam database...	0.30	0.10	0.87	13	72375	2	0	2	0	115
ASE_00274	RNaseP_bact_a links to Rfam database...	0.18	0.04	0.80	4	55606	1	0	1	0	99
ASE_00277	RNaseP_bact_a links to Rfam database...	0.27	0.10	0.75	9	48193	3	0	3	0	82
ASE_00279	RNaseP_bact_a links to Rfam database...	0.24	0.06	1.00	6	53295	0	0	0	0	95
ASE_00280	RNaseP_bact_a links to Rfam database...	0.40	0.20	0.80	20	51978	5	0	5	0	78
ASE_00281	RNaseP_bact_a links to Rfam database...	0.24	0.06	1.00	5	44546	1	0	0	1	83
ASE_00282	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	77815	0	0	0	0	127
ASE_00283	RNaseP_bact_a links to Rfam database...	0.18	0.05	0.71	5	61769	3	0	2	1	102
ASE_00284	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	58311	0	0	0	0	108
ASE_00285	RNaseP_bact_a links to Rfam database...	0.50	0.27	0.94	33	68971	3	0	2	1	89
ASE_00286	RNaseP_bact_a links to Rfam database...	0.19	0.04	0.80	4	46660	1	0	1	0	88
ASE_00287	RNaseP_bact_a links to Rfam database...	0.18	0.04	0.80	4	54941	1	0	1	0	99
ASE_00292	RNaseP_bact_a links to Rfam database...	0.53	0.32	0.88	44	81760	7	1	5	1	94
ASE_00294	RNaseP_bact_a links to Rfam database...	0.47	0.22	0.97	38	114442	1	1	0	0	133
ASE_00296	RNaseP_bact_a links to Rfam database...	0.42	0.20	0.88	29	91773	5	1	3	1	116
ASE_00297	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	52975	0	0	0	0	98
ASE_00298	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	67528	0	0	0	0	113
ASE_00305	RNaseP_bact_b links to Rfam database...	0.75	0.58	0.98	49	54565	2	0	1	1	36
ASE_00318	RNaseP_bact_b links to Rfam database...	0.55	0.32	0.95	38	80160	4	0	2	2	80
ASE_00321	RNaseP_bact_b links to Rfam database...	0.71	0.51	0.98	45	54569	4	0	1	3	43
ASE_00328	RNaseP_bact_b links to Rfam database...	0.73	0.55	0.97	62	72707	8	0	2	6	50
ASE_00332	RNaseP_bact_a links to Rfam database...	0.49	0.25	0.95	35	81773	3	0	2	1	103
ASE_00335	RNaseP_bact_b links to Rfam database...	0.65	0.46	0.93	53	75409	9	0	4	5	63
ASE_00340	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46056	3	0	0	3	85
ASE_00342	RNaseP_bact_a links to Rfam database...	0.45	0.21	0.96	24	62456	1	1	0	0	91
ASE_00353	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	57970	0	0	0	0	107
ASE_00361	RNaseP_bact_a links to Rfam database...	0.18	0.03	1.00	4	75462	0	0	0	0	123
ASE_00362	RNaseP_bact_a links to Rfam database...	0.23	0.05	1.00	5	48200	1	0	0	1	86
ASE_00363	RNaseP_bact_a links to Rfam database...	0.33	0.12	0.92	11	51348	2	0	1	1	83
ASE_00364	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	54285	0	0	0	0	105
ASE_00366	RNaseP_bact_a links to Rfam database...	0.23	0.08	0.67	8	58641	4	0	4	0	90
ASE_00367	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	43071	0	0	0	0	86
ASE_00369	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	55945	0	0	0	0	107
ASE_00370	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	41905	0	0	0	0	84
ASE_00372	RNaseP_bact_a links to Rfam database...	0.18	0.04	0.80	4	51998	1	0	1	0	96
ASE_00374	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	44850	0	0	0	0	88
ASE_00376	RNaseP_bact_a links to Rfam database...	0.16	0.04	0.67	4	56947	2	0	2	0	101
ASE_00377	RNaseP_bact_a links to Rfam database...	0.24	0.07	0.80	8	57620	3	0	2	1	99
ASE_00379	RNaseP_bact_a links to Rfam database...	0.24	0.06	1.00	5	46051	0	0	0	0	84
ASE_00382	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	41905	0	0	0	0	84
ASE_00383	RNaseP_bact_a links to Rfam database...	0.19	0.04	1.00	4	54611	0	0	0	0	101
ASE_00384	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	48516	0	0	0	0	92
ASE_00386	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	50403	0	0	0	0	96
ASE_00387	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	55945	0	0	0	0	104
ASE_00388	RNaseP_bact_a links to Rfam database...	0.44	0.20	0.95	18	45734	2	0	1	1	71
ASE_00390	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	42195	0	0	0	0	85
ASE_00393	RNaseP_bact_a links to Rfam database...	0.39	0.16	0.94	15	47879	1	0	1	0	78
ASE_00394	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46971	0	0	0	0	93
ASE_00395	RNaseP_bact_a links to Rfam database...	0.24	0.06	1.00	5	41611	1	0	0	1	79
ASE_00396	RNaseP_bact_a links to Rfam database...	0.36	0.14	0.92	12	41603	1	0	1	0	71
ASE_00397	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	54615	0	0	0	0	105
ASE_00398	RNaseP_bact_a links to Rfam database...	0.43	0.18	1.00	19	55926	1	0	0	1	85
ASE_00400	RNaseP_bact_a links to Rfam database...	0.54	0.31	0.94	33	57935	2	0	2	0	73
ASE_00401	RNaseP_bact_a links to Rfam database...	0.15	0.03	0.67	4	77022	2	0	2	0	122
ASE_00402	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	42486	0	0	0	0	85
ASE_00403	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	55945	0	0	0	0	107
ASE_00404	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	43071	0	0	0	0	85
ASE_00406	RNaseP_bact_a links to Rfam database...	0.44	0.23	0.85	22	48802	7	0	4	3	72
ASE_00411	RNaseP_bact_a links to Rfam database...	0.41	0.22	0.74	20	49428	8	0	7	1	69
ASE_00412	RNaseP_bact_a links to Rfam database...	0.19	0.08	0.47	8	58294	10	0	9	1	97
ASE_00413	RNaseP_bact_a links to Rfam database...	0.33	0.12	0.91	10	44540	1	0	1	0	71
ASE_00415	RNaseP_bact_a links to Rfam database...	0.16	0.04	0.67	4	54940	2	0	2	0	99
ASE_00416	RNaseP_bact_a links to Rfam database...	0.40	0.18	0.88	23	77395	6	1	2	3	104
ASE_00419	RNaseP_bact_a links to Rfam database...	0.39	0.16	1.00	16	54930	1	0	0	1	87
ASE_00422	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46971	0	0	0	0	94
ASE_00423	RNaseP_bact_a links to Rfam database...	0.57	0.37	0.89	40	56908	6	1	4	1	69
ASE_00427	RNaseP_nuc links to Rfam database...	0.31	0.15	0.64	7	40744	4	0	4	0	39
ASE_00428	RNaseP_bact_a links to Rfam database...	0.43	0.19	0.96	24	76611	2	1	0	1	101
ASE_00430	RNaseP_bact_a links to Rfam database...	0.49	0.24	1.00	23	46948	0	0	0	0	74
ASE_00437	RNaseP_bact_a links to Rfam database...	0.22	0.10	0.52	13	79376	12	1	11	0	122
ASE_00441	RNaseP_bact_a links to Rfam database...	0.41	0.17	1.00	19	64242	0	0	0	0	93
ASE_00448	RNaseP_bact_a links to Rfam database...	0.55	0.33	0.93	37	64221	8	1	2	5	75
ASE_00451	RNaseP_bact_a links to Rfam database...	0.47	0.24	0.91	30	70843	3	1	2	0	95
CRW_00024	SSU_rRNA_archaea links to Rfam database...	0.74	0.59	0.94	270	1085313	35	5	13	17	188
CRW_00034	SSU_rRNA_bacteria links to Rfam database...	0.56	0.35	0.90	166	1142131	28	4	15	9	308
CRW_00048	SSU_rRNA_bacteria links to Rfam database...	0.62	0.43	0.91	202	1170992	29	3	18	8	268
CRW_00054	SSU_rRNA_bacteria links to Rfam database...	0.62	0.42	0.91	191	1107607	23	4	14	5	265
CRW_00059	SSU_rRNA_bacteria links to Rfam database...	0.64	0.43	0.95	204	1172532	17	3	7	7	269
CRW_00061	SSU_rRNA_bacteria links to Rfam database...	0.63	0.42	0.94	199	1181742	19	2	10	7	277
CRW_00068	SSU_rRNA_bacteria links to Rfam database...	0.69	0.51	0.94	234	1109056	28	2	13	13	223
CRW_00096	SSU_rRNA_bacteria links to Rfam database...	0.62	0.43	0.92	198	1178664	29	0	18	11	267
CRW_00140	SSU_rRNA_bacteria links to Rfam database...	0.71	0.53	0.95	246	1136018	21	2	12	7	217
CRW_00141	SSU_rRNA_bacteria links to Rfam database...	0.64	0.43	0.93	207	1201802	26	4	12	10	269
CRW_00150	SSU_rRNA_bacteria links to Rfam database...	0.66	0.46	0.95	216	1152694	16	3	8	5	250
CRW_00152	SSU_rRNA_bacteria links to Rfam database...	0.69	0.52	0.92	244	1180151	26	4	17	5	227
CRW_00166	SSU_rRNA_bacteria links to Rfam database...	0.64	0.44	0.93	207	1190974	24	0	15	9	261
CRW_00173	SSU_rRNA_bacteria links to Rfam database...	0.56	0.36	0.89	158	1082478	26	2	18	6	287
CRW_00177	SSU_rRNA_bacteria links to Rfam database...	0.52	0.32	0.87	149	1178708	29	3	20	6	324
CRW_00196	SSU_rRNA_bacteria links to Rfam database...	0.64	0.43	0.96	204	1208022	12	2	7	3	271
CRW_00230	SSU_rRNA_bacteria links to Rfam database...	0.66	0.47	0.93	227	1198681	28	3	15	10	251
CRW_00245	SSU_rRNA_bacteria links to Rfam database...	0.65	0.45	0.93	205	1106108	20	3	12	5	248
CRW_00248	SSU_rRNA_bacteria links to Rfam database...	0.56	0.35	0.91	168	1218956	27	4	13	10	316
CRW_00250	SSU_rRNA_bacteria links to Rfam database...	0.68	0.50	0.91	241	1198660	33	4	21	8	237
CRW_00256	SSU_rRNA_bacteria links to Rfam database...	0.64	0.43	0.97	200	1192533	11	3	4	4	268
CRW_00270	SSU_rRNA_bacteria links to Rfam database...	0.66	0.47	0.93	212	1112057	22	4	13	5	243
CRW_00271	SSU_rRNA_bacteria links to Rfam database...	0.62	0.41	0.94	191	1122548	17	3	9	5	271
CRW_00273	SSU_rRNA_bacteria links to Rfam database...	0.57	0.35	0.92	156	1085431	16	4	10	2	290
CRW_00275	SSU_rRNA_bacteria links to Rfam database...	0.60	0.37	0.95	171	1115091	13	2	7	4	286
CRW_00277	SSU_rRNA_bacteria links to Rfam database...	0.64	0.44	0.93	201	1110578	20	3	13	4	252
CRW_00278	SSU_rRNA_bacteria links to Rfam database...	0.52	0.29	0.92	130	1130115	15	4	7	4	320
CRW_00279	SSU_rRNA_bacteria links to Rfam database...	0.68	0.51	0.92	237	1180158	31	3	18	10	227
CRW_00280	SSU_rRNA_bacteria links to Rfam database...	0.66	0.46	0.96	209	1118042	12	1	8	3	244
CRW_00281	SSU_rRNA_bacteria links to Rfam database...	0.65	0.45	0.95	209	1145120	17	2	10	5	255
CRW_00284	SSU_rRNA_bacteria links to Rfam database...	0.53	0.33	0.87	150	1131587	27	3	20	4	306
CRW_00285	SSU_rRNA_bacteria links to Rfam database...	0.62	0.41	0.93	188	1118058	18	2	12	4	270
CRW_00289	SSU_rRNA_bacteria links to Rfam database...	0.58	0.41	0.84	194	1189422	41	5	32	4	282
CRW_00298	SSU_rRNA_eukarya links to Rfam database...	0.41	0.19	0.86	95	1620790	37	0	15	22	399
CRW_00301	SSU_rRNA_eukarya links to Rfam database...	0.46	0.25	0.83	131	1762345	56	0	27	29	388
CRW_00306	SSU_rRNA_eukarya links to Rfam database...	0.55	0.32	0.95	146	1445697	38	0	7	31	316
CRW_00310	SSU_rRNA_eukarya links to Rfam database...	0.42	0.22	0.81	116	1805806	46	5	23	18	405
CRW_00326	SSU_rRNA_eukarya links to Rfam database...	0.45	0.23	0.92	113	1627987	32	1	9	22	389
CRW_00330	SSU_rRNA_eukarya links to Rfam database...	0.34	0.17	0.67	89	1988883	69	3	40	26	428
CRW_00332	SSU_rRNA_eukarya links to Rfam database...	0.39	0.20	0.76	97	1769893	46	1	30	15	380
CRW_00333	SSU_rRNA_eukarya links to Rfam database...	0.35	0.17	0.70	88	1892359	50	4	34	12	426
CRW_00345	SSU_rRNA_eukarya links to Rfam database...	0.48	0.29	0.81	145	1586691	63	2	33	28	353
CRW_00346	SSU_rRNA_eukarya links to Rfam database...	0.47	0.28	0.79	138	1584915	66	1	36	29	363
CRW_00348	SSU_rRNA_eukarya links to Rfam database...	0.40	0.23	0.72	114	1615344	78	4	41	33	389
CRW_00358	SSU_rRNA_eukarya links to Rfam database...	0.49	0.25	0.96	129	1675231	29	0	5	24	378
CRW_00366	SSU_rRNA_eukarya links to Rfam database...	0.47	0.25	0.87	122	1579613	37	1	17	19	360
CRW_00370	SSU_rRNA_eukarya links to Rfam database...	0.47	0.27	0.84	135	1640605	54	1	25	28	371
CRW_00371	SSU_rRNA_eukarya links to Rfam database...	0.48	0.29	0.81	143	1611733	59	1	33	25	353
CRW_00372	SSU_rRNA_eukarya links to Rfam database...	0.44	0.23	0.84	117	1626166	46	2	21	23	381
CRW_00379	SSU_rRNA_eukarya links to Rfam database...	0.49	0.26	0.93	140	2126802	50	1	10	39	394
CRW_00386	SSU_rRNA_eukarya links to Rfam database...	0.30	0.13	0.71	67	1751161	53	2	26	25	448
CRW_00403	SSU_rRNA_eukarya links to Rfam database...	0.48	0.27	0.83	127	1606375	60	0	26	34	337
CRW_00411	SSU_rRNA_eukarya links to Rfam database...	0.39	0.19	0.81	94	1615387	42	0	22	20	402
CRW_00414	SSU_rRNA_eukarya links to Rfam database...	0.38	0.19	0.74	96	1666095	60	1	33	26	399
CRW_00466	SSU_rRNA_bacteria links to Rfam database...	0.62	0.42	0.91	192	1116554	28	4	15	9	266
CRW_00548	5S_rRNA links to Rfam database...	0.69	0.47	1.00	18	7363	0	0	0	0	20
CRW_00552	5S_rRNA links to Rfam database...	0.72	0.51	1.00	20	7120	1	0	0	1	19
CRW_00555	5S_rRNA links to Rfam database...	0.62	0.50	0.77	20	7600	6	0	6	0	20
CRW_00567	5S_rRNA links to Rfam database...	0.77	0.60	1.00	24	7479	2	0	0	2	16
CRW_00570	5S_rRNA links to Rfam database...	0.90	0.81	1.00	30	6873	1	0	0	1	7
CRW_00573	5S_rRNA links to Rfam database...	0.74	0.60	0.92	24	7114	2	0	2	0	16
CRW_00589	SSU_rRNA_bacteria links to Rfam database...	0.58	0.35	0.97	156	1094299	10	0	5	5	289
CRW_00590	SSU_rRNA_bacteria links to Rfam database...	0.55	0.33	0.93	148	1119597	15	1	10	4	304
CRW_00591	SSU_rRNA_bacteria links to Rfam database...	0.66	0.46	0.93	206	1098682	26	1	14	11	240
CRW_00598	SSU_rRNA_eukarya links to Rfam database...	0.42	0.20	0.85	100	1666107	41	0	18	23	391
CRW_00758	SSU_rRNA_eukarya links to Rfam database...	0.46	0.26	0.79	127	1640605	57	4	30	23	356
CRW_00759	SSU_rRNA_eukarya links to Rfam database...	0.39	0.19	0.79	93	1637028	51	3	21	27	388
CRW_00760	SSU_rRNA_eukarya links to Rfam database...	0.45	0.24	0.84	117	1638815	55	0	23	32	369
CRW_00772	SSU_rRNA_bacteria links to Rfam database...	0.48	0.30	0.77	122	945842	42	3	33	6	282
CRW_00789	SSU_rRNA_bacteria links to Rfam database...	0.61	0.43	0.88	191	1137570	34	1	24	9	256
CRW_00795	SSU_rRNA_bacteria links to Rfam database...	0.59	0.38	0.90	150	1152755	40	0	16	24	244
CRW_00849	SSU_rRNA_bacteria links to Rfam database...	0.62	0.42	0.92	196	1118046	27	3	15	9	274
CRW_00997	SSU_rRNA_bacteria links to Rfam database...	0.60	0.39	0.93	181	1136084	19	3	10	6	283
CRW_01153	SSU_rRNA_eukarya links to Rfam database...	0.44	0.25	0.76	126	1606363	56	1	38	17	377
CRW_01171	SSU_rRNA_eukarya links to Rfam database...	0.47	0.25	0.90	125	1593866	44	0	14	30	381
CRW_01300	SSU_rRNA_eukarya links to Rfam database...	0.47	0.25	0.88	128	1693575	38	0	17	21	387
CRW_01484	5S_rRNA links to Rfam database...	0.70	0.49	1.00	19	7484	0	0	0	0	20
CRW_01485	5S_rRNA links to Rfam database...	0.70	0.49	1.00	19	7484	0	0	0	0	20
CRW_01487	5S_rRNA links to Rfam database...	0.68	0.49	0.95	20	7482	1	0	1	0	21
CRW_01489	5S_rRNA links to Rfam database...	0.73	0.54	1.00	21	7482	0	0	0	0	18
CRW_01491	5S_rRNA links to Rfam database...	0.70	0.51	0.96	22	8362	1	0	1	0	21
CRW_01492	5S_rRNA links to Rfam database...	0.69	0.48	1.00	20	7606	0	0	0	0	22
CRW_01494	5S_rRNA links to Rfam database...	0.48	0.35	0.67	14	7119	8	0	7	1	26
CRW_01497	5S_rRNA links to Rfam database...	0.71	0.53	0.95	21	7118	1	0	1	0	19
CRW_01498	5S_rRNA links to Rfam database...	0.66	0.44	1.00	19	8109	0	0	0	0	24
CRW_01499	5S_rRNA links to Rfam database...	0.66	0.46	0.95	19	7981	2	0	1	1	22
CRW_01500	5S_rRNA links to Rfam database...	0.69	0.47	1.00	18	7732	0	0	0	0	20
CRW_01501	5S_rRNA links to Rfam database...	0.66	0.56	0.78	25	8483	8	0	7	1	20
CRW_01508	5S_rRNA links to Rfam database...	0.71	0.55	0.92	23	7976	2	0	2	0	19
CRW_01532	5S_rRNA links to Rfam database...	0.70	0.62	0.79	23	7111	8	0	6	2	14
CRW_01533	5S_rRNA links to Rfam database...	0.77	0.73	0.82	27	7107	8	0	6	2	10
CRW_01534	5S_rRNA links to Rfam database...	0.70	0.62	0.79	23	7111	7	0	6	1	14
CRW_01535	5S_rRNA links to Rfam database...	0.77	0.73	0.82	27	7107	8	0	6	2	10
CRW_01536	5S_rRNA links to Rfam database...	0.75	0.57	1.00	21	7000	0	0	0	0	16
CRW_01537	5S_rRNA links to Rfam database...	0.61	0.38	1.00	14	7126	2	0	0	2	23
CRW_01539	5S_rRNA links to Rfam database...	0.75	0.70	0.81	26	7108	8	0	6	2	11
CRW_01540	5S_rRNA links to Rfam database...	0.79	0.65	0.96	24	7115	3	0	1	2	13
CRW_01541	5S_rRNA links to Rfam database...	0.59	0.35	1.00	13	7127	0	0	0	0	24
CRW_01542	5S_rRNA links to Rfam database...	0.70	0.62	0.79	23	7111	8	0	6	2	14
CRW_01544	5S_rRNA links to Rfam database...	0.81	0.76	0.88	28	7108	5	0	4	1	9
CRW_01548	5S_rRNA links to Rfam database...	0.77	0.73	0.82	27	6988	7	0	6	1	10
CRW_01555	5S_rRNA links to Rfam database...	0.79	0.65	0.96	24	9020	3	0	1	2	13
CRW_01556	5S_rRNA links to Rfam database...	0.89	0.81	0.97	30	7109	2	0	1	1	7
CRW_01557	5S_rRNA links to Rfam database...	0.80	0.65	1.00	24	7116	2	0	0	2	13
CRW_01559	5S_rRNA links to Rfam database...	0.74	0.62	0.88	23	7234	6	0	3	3	14
CRW_01562	5S_rRNA links to Rfam database...	0.76	0.62	0.92	23	7115	3	0	2	1	14
CRW_01563	5S_rRNA links to Rfam database...	0.72	0.51	1.00	19	6884	0	0	0	0	18
CRW_01566	5S_rRNA links to Rfam database...	0.31	0.16	0.60	6	7130	4	0	4	0	31
CRW_01568	5S_rRNA links to Rfam database...	0.80	0.65	1.00	24	7116	1	0	0	1	13
CRW_01569	5S_rRNA links to Rfam database...	0.73	0.54	1.00	20	7120	1	0	0	1	17
CRW_01570	5S_rRNA links to Rfam database...	0.80	0.65	1.00	24	7116	3	0	0	3	13
CRW_01572	5S_rRNA links to Rfam database...	0.72	0.51	1.00	19	7002	3	0	0	3	18
CRW_01573	5S_rRNA links to Rfam database...	0.77	0.73	0.82	27	7227	8	0	6	2	10
CRW_01578	5S_rRNA links to Rfam database...	0.77	0.73	0.82	27	7107	8	0	6	2	10
CRW_01580	5S_rRNA links to Rfam database...	0.66	0.57	0.78	21	7113	8	0	6	2	16
CRW_01581	5S_rRNA links to Rfam database...	0.53	0.35	0.81	13	7124	3	0	3	0	24
CRW_01583	5S_rRNA links to Rfam database...	0.77	0.62	0.96	23	7116	2	0	1	1	14
CRW_01584	5S_rRNA links to Rfam database...	0.74	0.65	0.86	24	7112	6	0	4	2	13
CRW_01590	5S_rRNA links to Rfam database...	0.87	0.76	1.00	28	7112	1	0	0	1	9
CRW_01593	5S_rRNA links to Rfam database...	0.80	0.65	1.00	24	7116	1	0	0	1	13
CRW_01595	5S_rRNA links to Rfam database...	0.51	0.38	0.70	14	8495	7	0	6	1	23
CRW_01599	5S_rRNA links to Rfam database...	0.77	0.73	0.82	27	7107	8	0	6	2	10
CRW_01603	5S_rRNA links to Rfam database...	0.79	0.70	0.90	26	7111	4	0	3	1	11
CRW_01605	5S_rRNA links to Rfam database...	0.73	0.54	1.00	20	7120	2	0	0	2	17
CRW_01606	5S_rRNA links to Rfam database...	0.49	0.27	0.91	10	7129	2	0	1	1	27
CRW_01608	5S_rRNA links to Rfam database...	0.77	0.65	0.92	24	8359	3	0	2	1	13
CRW_01616	5S_rRNA links to Rfam database...	0.77	0.73	0.82	27	7107	8	0	6	2	10
CRW_01617	5S_rRNA links to Rfam database...	0.85	0.73	1.00	27	7113	2	0	0	2	10
CRW_01620	5S_rRNA links to Rfam database...	0.84	0.73	0.96	27	6993	2	0	1	1	10
CRW_01621	5S_rRNA links to Rfam database...	0.75	0.59	0.96	22	7117	2	0	1	1	15
CRW_01623	5S_rRNA links to Rfam database...	0.79	0.62	1.00	23	7117	1	0	0	1	14
CRW_01625	5S_rRNA links to Rfam database...	0.80	0.73	0.87	27	7109	5	0	4	1	10
PDB_00012	mir-TAR links to Rfam database...	1.00	1.00	1.00	7	399	3	0	0	3	0
PDB_00070	tRNA links to Rfam database...	0.69	0.58	0.82	14	2833	3	0	3	0	10
PDB_00213	Gammaretro_CES links to Rfam database...	0.58	0.34	1.00	14	5036	0	0	0	0	27
PDB_00229	tRNA links to Rfam database...	0.91	0.87	0.95	20	2754	1	0	1	0	3
PDB_00327	tRNA links to Rfam database...	0.55	0.30	1.00	7	3074	0	0	0	0	16
PDB_00362	tRNA links to Rfam database...	0.83	0.73	0.94	16	2833	1	0	1	0	6
PDB_00402	tRNA links to Rfam database...	0.69	0.48	1.00	11	2764	0	0	0	0	12
PDB_00431	tRNA links to Rfam database...	0.77	0.75	0.79	15	2192	8	0	4	4	5
PDB_00474	tRNA links to Rfam database...	0.86	0.74	1.00	17	2684	0	0	0	0	6
PDB_00553	mir-TAR links to Rfam database...	0.00	0.00	0.00	0	465	0	0	0	0	11
PDB_00571	tRNA links to Rfam database...	0.77	0.64	0.94	16	3304	1	1	0	0	9
PDB_00667	tRNA links to Rfam database...	0.95	0.91	1.00	20	2830	2	0	0	2	2
PDB_00703	SSU_rRNA_bacteria links to Rfam database...	0.60	0.40	0.92	196	1073633	28	3	13	12	299
PDB_00741	Entero_5_CRE links to Rfam database...	0.45	0.29	0.71	5	696	2	0	2	0	12
PDB_00810	s2m links to Rfam database...	0.64	0.41	1.00	7	1074	0	0	0	0	10
PDB_00828	Purine links to Rfam database...	0.88	0.78	1.00	21	2464	0	0	0	0	6
PDB_00829	Purine links to Rfam database...	0.86	0.75	1.00	18	2260	0	0	0	0	6
PDB_00854	SSU_rRNA_bacteria links to Rfam database...	0.62	0.41	0.95	218	1500548	29	3	9	17	317
PDB_00876	HIV_FE links to Rfam database...	0.00	0.00	0.00	0	990	0	0	0	0	20
PDB_01002	tRNA links to Rfam database...	0.95	0.90	1.00	19	2756	2	0	0	2	2
PDB_01020	Purine links to Rfam database...	0.86	0.74	1.00	17	2261	1	0	0	1	6
PDB_01050	UnaL2 links to Rfam database...	0.62	0.38	1.00	5	625	1	0	0	1	8
PDB_01053	tRNA links to Rfam database...	0.66	0.44	1.00	7	1371	0	0	0	0	9
PDB_01073	SAM links to Rfam database...	0.75	0.56	1.00	19	4352	1	0	0	1	15
PDB_01088	SSU_rRNA_bacteria links to Rfam database...	0.59	0.38	0.92	206	1471246	35	2	16	17	341
PDB_01103	SSU_rRNA_bacteria links to Rfam database...	0.62	0.40	0.96	226	1606292	20	3	7	10	336
PDB_01105	SSU_rRNA_bacteria links to Rfam database...	0.58	0.36	0.94	192	1433767	24	1	11	12	348
PDB_01114	TPP links to Rfam database...	0.38	0.15	1.00	4	2846	0	0	0	0	23
PDB_01120	SSU_rRNA_bacteria links to Rfam database...	0.62	0.41	0.93	216	1204895	30	4	13	13	311
PDB_01152	HIV_FS2 links to Rfam database...	0.88	0.79	1.00	11	550	0	0	0	0	3
PDB_01236	ykoK links to Rfam database...	0.69	0.50	0.96	27	11600	2	0	1	1	27
PDB_01273	SSU_rRNA_bacteria links to Rfam database...	0.66	0.48	0.92	234	1118007	37	4	15	18	257
RFA_00389	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00390	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00391	Hammerhead_3 links to Rfam database...	0.93	0.87	1.00	13	1418	2	0	0	2	2
RFA_00396	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	2	0	0	2	1
RFA_00402	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	0	0	0	0	0
RFA_00409	Hammerhead_3 links to Rfam database...	0.77	0.60	1.00	9	1422	1	0	0	1	6
RFA_00416	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1470	3	0	0	3	0
RFA_00433	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00434	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00436	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00440	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1470	2	0	0	2	0
RFA_00442	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00444	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1525	1	0	0	1	0
RFA_00583	Y_RNA links to Rfam database...	0.00	0.00	0.00	0	4946	5	0	4	1	15
RFA_00584	Y_RNA links to Rfam database...	0.00	0.00	0.00	0	2926	0	0	0	0	15
RFA_00585	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4836	2	0	0	2	0
RFA_00586	Y_RNA links to Rfam database...	0.00	0.00	0.00	0	3909	7	0	7	0	15
RFA_00587	Y_RNA links to Rfam database...	0.00	0.00	0.00	0	4843	9	4	4	1	15
RFA_00588	Y_RNA links to Rfam database...	0.00	0.00	0.00	0	4560	0	0	0	0	15
RFA_00589	Y_RNA links to Rfam database...	0.00	0.00	0.00	0	4371	0	0	0	0	15
RFA_00594	Y_RNA links to Rfam database...	0.73	0.53	1.00	8	2767	0	0	0	0	7
RFA_00596	Y_RNA links to Rfam database...	0.00	0.00	0.00	0	5995	0	0	0	0	15
RFA_00599	Telomerase-vert links to Rfam database...	0.00	0.00	0.00	0	101475	0	0	0	0	111
RFA_00601	Telomerase-vert links to Rfam database...	0.00	0.00	0.00	0	99235	0	0	0	0	114
RFA_00602	Telomerase-vert links to Rfam database...	0.00	0.00	0.00	0	101475	0	0	0	0	116
RFA_00658	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	1128	0	0	0	0	14
RFA_00664	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	990	0	0	0	0	14
RFA_00667	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	990	0	0	0	0	14
RFA_00668	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	990	0	0	0	0	14
RFA_00672	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	903	0	0	0	0	13
RFA_00673	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	1128	0	0	0	0	14
RFA_00674	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	1128	0	0	0	0	14
RFA_00675	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	990	0	0	0	0	14
RFA_00677	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	990	0	0	0	0	14
RFA_00678	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	946	0	0	0	0	14
RFA_00680	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	1128	0	0	0	0	14
RFA_00704	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	990	0	0	0	0	14
RFA_00707	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	1035	0	0	0	0	14
RFA_00715	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	946	0	0	0	0	14
RFA_00717	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	903	0	0	0	0	14
RFA_00730	s2m links to Rfam database...	0.64	0.42	1.00	5	898	1	0	0	1	7
RFA_00731	s2m links to Rfam database...	0.64	0.42	1.00	5	898	1	0	0	1	7
RFA_00733	s2m links to Rfam database...	0.64	0.42	1.00	5	898	1	0	0	1	7
RFA_00734	s2m links to Rfam database...	0.64	0.42	1.00	5	898	0	0	0	0	7
RFA_00736	s2m links to Rfam database...	0.64	0.42	1.00	5	898	1	0	0	1	7
RFA_00737	s2m links to Rfam database...	0.64	0.42	1.00	5	898	1	0	0	1	7
RFA_00745	s2m links to Rfam database...	0.64	0.42	1.00	5	941	1	0	0	1	7
RFA_00749	s2m links to Rfam database...	0.64	0.42	1.00	5	898	1	0	0	1	7
RFA_00758	s2m links to Rfam database...	0.00	0.00	0.00	0	903	0	0	0	0	12
RFA_00762	s2m links to Rfam database...	0.64	0.42	1.00	5	898	0	0	0	0	7
RFA_00763	s2m links to Rfam database...	0.64	0.42	1.00	5	898	1	0	0	1	7
RFA_00764	s2m links to Rfam database...	0.64	0.42	1.00	5	898	1	0	0	1	7
RFA_00765	s2m links to Rfam database...	0.64	0.42	1.00	5	898	1	0	0	1	7
RFA_00786	Gammaretro_CES links to Rfam database...	0.25	0.13	0.50	4	5042	4	1	3	0	28
RFA_00791	Gammaretro_CES links to Rfam database...	0.00	0.00	0.00	0	5151	0	0	0	0	32
RFA_00792	Gammaretro_CES links to Rfam database...	0.00	0.00	0.00	0	5046	4	1	3	0	32
RFA_00801	Gammaretro_CES links to Rfam database...	0.31	0.16	0.63	5	5042	4	0	3	1	27
SPR_00007	tRNA links to Rfam database...	0.90	0.81	1.00	17	2833	0	0	0	0	4
SPR_00009	tRNA links to Rfam database...	0.55	0.30	1.00	6	2844	0	0	0	0	14
SPR_00010	tRNA links to Rfam database...	0.85	0.76	0.94	16	2833	1	0	1	0	5
SPR_00012	tRNA links to Rfam database...	0.67	0.45	1.00	9	2841	0	0	0	0	11
SPR_00013	tRNA links to Rfam database...	0.67	0.45	1.00	9	2841	0	0	0	0	11
SPR_00016	tRNA links to Rfam database...	0.58	0.33	1.00	7	2843	0	0	0	0	14
SPR_00017	tRNA links to Rfam database...	0.72	0.52	1.00	11	2839	0	0	0	0	10
SPR_00025	tRNA links to Rfam database...	0.77	0.60	1.00	12	2914	0	0	0	0	8
SPR_00026	tRNA links to Rfam database...	0.90	0.81	1.00	17	2909	0	0	0	0	4
SPR_00027	tRNA links to Rfam database...	0.90	0.81	1.00	17	2909	0	0	0	0	4
SPR_00036	tRNA links to Rfam database...	0.77	0.60	1.00	12	2763	1	0	0	1	8
SPR_00045	tRNA links to Rfam database...	0.67	0.59	0.76	13	2833	4	0	4	0	9
SPR_00064	tRNA links to Rfam database...	0.90	0.81	1.00	17	2833	0	0	0	0	4
SPR_00065	tRNA links to Rfam database...	0.90	0.81	1.00	17	2833	0	0	0	0	4
SPR_00066	tRNA links to Rfam database...	0.90	0.81	1.00	17	2833	0	0	0	0	4
SPR_00068	tRNA links to Rfam database...	0.90	0.81	1.00	17	2833	0	0	0	0	4
SPR_00070	tRNA links to Rfam database...	0.90	0.81	1.00	17	2833	0	0	0	0	4
SPR_00074	tRNA links to Rfam database...	0.89	0.80	1.00	16	2834	1	0	0	1	4
SPR_00079	tRNA links to Rfam database...	0.48	0.37	0.64	7	2474	5	0	4	1	12
SPR_00086	tRNA links to Rfam database...	0.69	0.52	0.92	11	2838	1	0	1	0	10
SPR_00087	tRNA links to Rfam database...	0.95	0.90	1.00	18	2832	0	0	0	0	2
SPR_00088	tRNA links to Rfam database...	0.84	0.70	1.00	14	2836	0	0	0	0	6
SPR_00089	tRNA links to Rfam database...	0.84	0.70	1.00	14	2836	0	0	0	0	6
SPR_00090	tRNA links to Rfam database...	0.95	0.90	1.00	18	2832	0	0	0	0	2
SPR_00091	tRNA links to Rfam database...	0.95	0.90	1.00	18	2832	0	0	0	0	2
SPR_00095	tRNA links to Rfam database...	0.62	0.52	0.73	11	2835	4	2	2	0	10
SPR_00111	tRNA links to Rfam database...	0.90	0.81	1.00	17	2684	0	0	0	0	4
SPR_00112	tRNA links to Rfam database...	0.90	0.81	1.00	17	2684	2	0	0	2	4
SPR_00115	tRNA links to Rfam database...	0.90	0.81	1.00	17	2684	0	0	0	0	4
SPR_00117	tRNA links to Rfam database...	0.90	0.81	1.00	17	2833	2	0	0	2	4
SPR_00139	tRNA links to Rfam database...	0.90	0.81	1.00	17	2909	1	0	0	1	4
SPR_00153	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00155	tRNA links to Rfam database...	0.90	0.81	1.00	17	2909	0	0	0	0	4
SPR_00156	tRNA links to Rfam database...	0.72	0.52	1.00	11	2915	0	0	0	0	10
SPR_00176	tRNA links to Rfam database...	0.92	0.85	1.00	17	2833	0	0	0	0	3
SPR_00177	tRNA links to Rfam database...	0.95	0.95	0.95	20	2829	1	0	1	0	1
SPR_00178	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00191	tRNA links to Rfam database...	0.87	0.76	1.00	16	2834	0	0	0	0	5
SPR_00200	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00224	tRNA links to Rfam database...	0.87	0.85	0.89	17	3722	3	0	2	1	3
SPR_00271	tRNA links to Rfam database...	0.95	0.95	0.95	20	2829	1	0	1	0	1
SPR_00273	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00276	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00277	tRNA links to Rfam database...	0.72	0.52	1.00	11	2915	0	0	0	0	10
SPR_00294	tRNA links to Rfam database...	0.90	0.81	1.00	17	2833	0	0	0	0	4
SPR_00295	tRNA links to Rfam database...	0.90	0.81	1.00	17	2758	0	0	0	0	4
SPR_00314	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	2	0	0	2	0
SPR_00315	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	2	0	0	2	0
SPR_00317	tRNA links to Rfam database...	0.78	0.80	0.76	16	2905	8	1	4	3	4
SPR_00318	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	2	0	0	2	0
SPR_00321	tRNA links to Rfam database...	1.00	1.00	1.00	21	2982	0	0	0	0	0
SPR_00333	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	0	0	0	0	0
SPR_00352	tRNA links to Rfam database...	0.90	0.81	1.00	17	2909	0	0	0	0	4
SPR_00353	tRNA links to Rfam database...	0.87	0.76	1.00	16	2834	0	0	0	0	5
SPR_00357	tRNA links to Rfam database...	0.58	0.33	1.00	7	2919	0	0	0	0	14
SPR_00358	tRNA links to Rfam database...	0.89	0.80	1.00	16	2910	0	0	0	0	4
SPR_00370	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	0	0	0	0	0
SPR_00386	tRNA links to Rfam database...	0.59	0.35	1.00	7	4179	0	0	0	0	13
SPR_00414	tRNA links to Rfam database...	0.87	0.81	0.94	17	3552	5	0	1	4	4
SPR_00415	tRNA links to Rfam database...	1.00	1.00	1.00	21	3549	4	0	0	4	0
SPR_00417	tRNA links to Rfam database...	0.68	0.55	0.86	12	3556	6	0	2	4	10
SPR_00418	tRNA links to Rfam database...	0.56	0.55	0.57	12	3549	13	3	6	4	10
SPR_00434	tRNA links to Rfam database...	0.90	0.81	1.00	17	2833	0	0	0	0	4
SPR_00435	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00436	tRNA links to Rfam database...	0.90	0.81	1.00	17	2833	2	0	0	2	4
SPR_00437	tRNA links to Rfam database...	0.90	0.81	1.00	17	2758	2	0	0	2	4
SPR_00438	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	0	0	0	0	0
SPR_00452	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00455	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00456	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	2	0	0	2	0
SPR_00476	tRNA links to Rfam database...	0.90	0.81	1.00	17	2758	0	0	0	0	4
SPR_00479	tRNA links to Rfam database...	0.90	0.81	1.00	17	2833	0	0	0	0	4
SPR_00482	tRNA links to Rfam database...	0.90	0.81	1.00	17	2684	0	0	0	0	4
SPR_00483	tRNA links to Rfam database...	0.90	0.81	1.00	17	2833	0	0	0	0	4
SPR_00487	tRNA links to Rfam database...	0.56	0.32	1.00	7	2694	0	0	0	0	15
SPR_00493	tRNA links to Rfam database...	0.88	0.82	0.95	18	2756	1	0	1	0	4
SPR_00496	tRNA links to Rfam database...	0.90	0.81	1.00	17	2758	0	0	0	0	4
SPR_00497	tRNA links to Rfam database...	0.90	0.81	1.00	17	2758	0	0	0	0	4
SPR_00502	tRNA links to Rfam database...	0.90	0.81	1.00	17	2909	0	0	0	0	4
SPR_00504	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	0	0	0	0	0
SPR_00505	tRNA links to Rfam database...	0.89	0.80	1.00	16	2910	0	0	0	0	4
SPR_00506	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00509	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	3	0	0	3	0
SPR_00512	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	3	0	0	3	0
SPR_00513	tRNA links to Rfam database...	0.71	0.50	1.00	10	2916	0	0	0	0	10
SPR_00518	tRNA links to Rfam database...	0.89	0.80	1.00	16	2910	0	0	0	0	4
SPR_00548	tRNA links to Rfam database...	0.90	0.86	0.95	18	3384	1	0	1	0	3
SPR_00557	tRNA links to Rfam database...	0.90	0.81	1.00	17	2833	0	0	0	0	4
SPR_00561	tRNA links to Rfam database...	0.90	0.81	1.00	17	2833	0	0	0	0	4
SPR_00590	tRNA links to Rfam database...	0.00	0.00	0.00	0	3003	0	0	0	0	20
SPR_00593	tRNA links to Rfam database...	0.76	0.63	0.92	12	2762	2	0	1	1	7
SPR_00595	tRNA links to Rfam database...	0.75	0.57	1.00	12	2763	0	0	0	0	9
SPR_00598	tRNA links to Rfam database...	0.70	0.57	0.86	12	2989	3	0	2	1	9
SPR_00610	tRNA links to Rfam database...	0.70	0.57	0.86	12	2542	3	0	2	1	9
SPR_00620	tRNA links to Rfam database...	0.70	0.57	0.86	12	2989	3	0	2	1	9
SPR_00721	tRNA links to Rfam database...	0.72	0.57	0.92	12	2913	3	0	1	2	9
SPR_00722	tRNA links to Rfam database...	0.89	0.80	1.00	16	2910	0	0	0	0	4
SPR_00758	tRNA links to Rfam database...	0.83	0.81	0.85	17	2983	3	0	3	0	4
SPR_00760	tRNA links to Rfam database...	0.47	0.43	0.53	9	3553	9	0	8	1	12
SPR_00777	tRNA links to Rfam database...	0.95	0.95	0.95	19	2608	3	0	1	2	1
SPR_00867	tRNA links to Rfam database...	0.95	0.95	0.95	20	2905	4	0	1	3	1
SPR_00868	tRNA links to Rfam database...	0.81	0.81	0.81	17	2905	5	0	4	1	4
SPR_00943	tRNA links to Rfam database...	0.74	0.60	0.92	12	2543	2	0	1	1	8
SPR_00957	tRNA links to Rfam database...	0.65	0.57	0.75	12	2987	5	0	4	1	9
SPR_01040	tRNA links to Rfam database...	0.58	0.33	1.00	7	2768	0	0	0	0	14
SPR_01088	tRNA links to Rfam database...	0.90	0.81	1.00	17	2909	0	0	0	0	4
SPR_01095	tRNA links to Rfam database...	0.58	0.33	1.00	7	2843	0	0	0	0	14
SPR_01106	tRNA links to Rfam database...	0.90	0.81	1.00	17	2539	2	0	0	2	4
SPR_01117	tRNA links to Rfam database...	0.95	0.95	0.95	20	2982	2	0	1	1	1
SPR_01157	tRNA links to Rfam database...	0.76	0.76	0.76	16	2754	6	0	5	1	5
SRP_00006	Metazoa_SRP links to Rfam database...	0.68	0.48	0.98	48	45704	6	0	1	5	53
SRP_00008	Bacteria_small_SRP links to Rfam database...	0.85	0.72	1.00	18	2908	0	0	0	0	7
SRP_00011	Plant_SRP links to Rfam database...	0.57	0.33	1.00	34	46326	1	0	0	1	70
SRP_00015	Plant_SRP links to Rfam database...	0.65	0.46	0.90	46	46309	7	0	5	2	53
SRP_00020	Bacteria_small_SRP links to Rfam database...	0.52	0.27	1.00	9	5556	0	0	0	0	24
SRP_00024	Bacteria_large_SRP links to Rfam database...	0.22	0.06	0.83	5	37669	1	0	1	0	82
SRP_00026	Bacteria_large_SRP links to Rfam database...	0.24	0.06	1.00	5	36851	0	0	0	0	83
SRP_00027	Bacteria_large_SRP links to Rfam database...	0.24	0.06	1.00	5	37123	0	0	0	0	82
SRP_00030	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	36856	0	0	0	0	88
SRP_00031	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	36315	0	0	0	0	89
SRP_00037	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	36585	0	0	0	0	87
SRP_00038	Bacteria_small_SRP links to Rfam database...	0.19	0.12	0.31	4	5037	9	0	9	0	29
SRP_00042	Bacteria_small_SRP links to Rfam database...	0.54	0.36	0.82	9	3994	3	1	1	1	16
SRP_00044	Bacteria_small_SRP links to Rfam database...	0.31	0.09	1.00	3	6102	0	0	0	0	29
SRP_00046	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	4744	9	1	8	0	32
SRP_00050	Metazoa_SRP links to Rfam database...	0.60	0.44	0.81	44	44796	12	0	10	2	55
SRP_00051	Bacteria_small_SRP links to Rfam database...	0.32	0.10	1.00	3	5457	0	0	0	0	27
SRP_00054	Bacteria_small_SRP links to Rfam database...	0.31	0.09	1.00	3	5562	0	0	0	0	29
SRP_00057	Bacteria_small_SRP links to Rfam database...	0.29	0.09	1.00	3	6325	0	0	0	0	32
SRP_00058	Bacteria_small_SRP links to Rfam database...	0.30	0.09	1.00	3	5775	0	0	0	0	31
SRP_00066	Metazoa_SRP links to Rfam database...	0.60	0.40	0.89	40	45406	8	0	5	3	60
SRP_00072	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6323	5	2	3	0	29
SRP_00074	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6551	4	0	4	0	29
SRP_00075	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	5555	10	2	8	0	34
SRP_00077	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6666	4	0	4	0	37
SRP_00081	Bacteria_small_SRP links to Rfam database...	0.31	0.10	1.00	3	5562	0	0	0	0	28
SRP_00084	Bacteria_small_SRP links to Rfam database...	0.30	0.09	1.00	3	5457	0	0	0	0	31
SRP_00086	Metazoa_SRP links to Rfam database...	0.65	0.47	0.89	47	44200	7	0	6	1	53
SRP_00088	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	34191	0	0	0	0	89
SRP_00089	Bacteria_large_SRP links to Rfam database...	0.24	0.06	1.00	5	35773	0	0	0	0	85
SRP_00090	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	35511	0	0	0	0	90
SRP_00094	Bacteria_small_SRP links to Rfam database...	0.59	0.50	0.71	12	4078	5	1	4	0	12
SRP_00095	Bacteria_small_SRP links to Rfam database...	0.40	0.28	0.58	7	3993	5	1	4	0	18
SRP_00098	Bacteria_small_SRP links to Rfam database...	0.28	0.08	1.00	3	6438	0	0	0	0	34
SRP_00102	Metazoa_SRP links to Rfam database...	0.62	0.46	0.84	46	44496	12	1	8	3	55
SRP_00103	Metazoa_SRP links to Rfam database...	0.64	0.44	0.92	45	45402	7	0	4	3	57
SRP_00105	Bacteria_small_SRP links to Rfam database...	0.30	0.09	1.00	3	5562	0	0	0	0	31
SRP_00107	Bacteria_small_SRP links to Rfam database...	0.40	0.16	1.00	3	3652	0	0	0	0	16
SRP_00121	Bacteria_small_SRP links to Rfam database...	0.35	0.12	1.00	3	4275	0	0	0	0	22
SRP_00128	Bacteria_small_SRP links to Rfam database...	0.29	0.08	1.00	3	6783	0	0	0	0	33
SRP_00132	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	4845	6	1	5	0	29
SRP_00134	Bacteria_large_SRP links to Rfam database...	0.32	0.10	1.00	3	5992	0	0	0	0	26
SRP_00141	Bacteria_small_SRP links to Rfam database...	0.27	0.07	1.00	3	6325	0	0	0	0	38
SRP_00152	Plant_SRP links to Rfam database...	0.58	0.39	0.87	40	45707	6	0	6	0	63
SRP_00161	Bacteria_small_SRP links to Rfam database...	0.64	0.45	0.91	10	2839	1	0	1	0	12
SRP_00162	Bacteria_small_SRP links to Rfam database...	0.61	0.61	0.61	14	2903	11	2	7	2	9
SRP_00163	Bacteria_small_SRP links to Rfam database...	0.34	0.12	1.00	3	3483	0	0	0	0	23
SRP_00164	Bacteria_small_SRP links to Rfam database...	0.29	0.09	1.00	3	6900	0	0	0	0	32
SRP_00170	Bacteria_small_SRP links to Rfam database...	0.64	0.48	0.86	12	4081	3	1	1	1	13
SRP_00171	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	45435	16	2	14	0	88
SRP_00173	Bacteria_large_SRP links to Rfam database...	0.24	0.06	1.00	5	38221	0	0	0	0	85
SRP_00174	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	38781	0	0	0	0	86
SRP_00178	Plant_SRP links to Rfam database...	0.53	0.28	1.00	29	45724	2	0	0	2	73
SRP_00179	Plant_SRP links to Rfam database...	0.70	0.50	0.96	53	46001	5	0	2	3	52
SRP_00181	Plant_SRP links to Rfam database...	0.56	0.31	1.00	32	46024	2	0	0	2	70
SRP_00182	Plant_SRP links to Rfam database...	0.43	0.22	0.85	22	46030	4	0	4	0	79
SRP_00184	Plant_SRP links to Rfam database...	0.35	0.16	0.76	16	46035	8	0	5	3	84
SRP_00188	Plant_SRP links to Rfam database...	0.24	0.11	0.53	9	31108	8	1	7	0	70
SRP_00194	Bacteria_small_SRP links to Rfam database...	0.38	0.14	1.00	3	3237	0	0	0	0	18
SRP_00200	Bacteria_small_SRP links to Rfam database...	0.29	0.08	1.00	3	6900	0	0	0	0	33
SRP_00209	Bacteria_small_SRP links to Rfam database...	0.30	0.19	0.50	5	4646	5	0	5	0	22
SRP_00213	Bacteria_small_SRP links to Rfam database...	0.58	0.40	0.83	10	4174	2	1	1	0	15
SRP_00215	Bacteria_small_SRP links to Rfam database...	0.35	0.12	1.00	3	3237	0	0	0	0	22
SRP_00227	Bacteria_small_SRP links to Rfam database...	0.69	0.48	1.00	15	5136	0	0	0	0	16
SRP_00228	Metazoa_SRP links to Rfam database...	0.77	0.61	0.98	58	45392	3	0	1	2	37
SRP_00231	Bacteria_small_SRP links to Rfam database...	0.53	0.47	0.59	16	5433	11	1	10	0	18
SRP_00233	Bacteria_small_SRP links to Rfam database...	0.30	0.09	1.00	3	5148	0	0	0	0	30
SRP_00234	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	36315	0	0	0	0	86
SRP_00243	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	5145	6	1	5	0	31
SRP_00244	Bacteria_small_SRP links to Rfam database...	0.28	0.08	1.00	3	6900	0	0	0	0	36
SRP_00250	Bacteria_small_SRP links to Rfam database...	0.29	0.08	1.00	3	6783	0	0	0	0	33
SRP_00251	Bacteria_small_SRP links to Rfam database...	0.29	0.08	1.00	3	7018	0	0	0	0	33
SRP_00266	Bacteria_small_SRP links to Rfam database...	0.32	0.10	1.00	3	4653	0	0	0	0	26
SRP_00268	Bacteria_small_SRP links to Rfam database...	0.64	0.48	0.87	13	4171	2	1	1	0	14
SRP_00269	Bacteria_small_SRP links to Rfam database...	0.72	0.52	1.00	17	5033	0	0	0	0	16
SRP_00270	Bacteria_small_SRP links to Rfam database...	0.44	0.19	1.00	6	4650	0	0	0	0	25
SRP_00271	Bacteria_small_SRP links to Rfam database...	0.35	0.13	1.00	3	3237	0	0	0	0	21
SRP_00273	Bacteria_small_SRP links to Rfam database...	0.56	0.48	0.66	19	6757	10	1	9	0	21
SRP_00274	Bacteria_small_SRP links to Rfam database...	0.28	0.08	1.00	3	6900	0	0	0	0	35
SRP_00295	Bacteria_small_SRP links to Rfam database...	0.71	0.50	1.00	19	6884	0	0	0	0	19
SRP_00303	Bacteria_small_SRP links to Rfam database...	0.31	0.09	1.00	3	6667	0	0	0	0	29
SRP_00308	Bacteria_large_SRP links to Rfam database...	0.30	0.10	0.90	9	36305	1	0	1	0	79
SRP_00310	Bacteria_small_SRP links to Rfam database...	0.47	0.26	0.86	6	2919	1	0	1	0	17
SRP_00312	Bacteria_small_SRP links to Rfam database...	0.55	0.37	0.83	10	4174	2	1	1	0	17
SRP_00315	Bacteria_small_SRP links to Rfam database...	0.47	0.26	0.86	6	2919	1	0	1	0	17
SRP_00317	Metazoa_SRP links to Rfam database...	0.58	0.38	0.88	37	45108	6	0	5	1	61
SRP_00318	Bacteria_small_SRP links to Rfam database...	0.47	0.26	0.86	6	2996	1	0	1	0	17
SRP_00325	Bacteria_small_SRP links to Rfam database...	0.72	0.52	1.00	17	4354	0	0	0	0	16
SRP_00326	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	5050	0	0	0	0	31
SRP_00333	Bacteria_small_SRP links to Rfam database...	0.30	0.09	1.00	3	5148	0	0	0	0	31
SRP_00335	Bacteria_large_SRP links to Rfam database...	0.28	0.08	1.00	3	35242	0	0	0	0	36
SRP_00337	Bacteria_large_SRP links to Rfam database...	0.23	0.05	1.00	5	35506	0	0	0	0	86
SRP_00338	Bacteria_small_SRP links to Rfam database...	0.29	0.08	1.00	3	5457	0	0	0	0	33
SRP_00341	Bacteria_small_SRP links to Rfam database...	0.31	0.10	1.00	3	4750	0	0	0	0	28
SRP_00342	Bacteria_small_SRP links to Rfam database...	0.35	0.12	1.00	3	4002	0	0	0	0	22
SRP_00347	Metazoa_SRP links to Rfam database...	0.71	0.53	0.96	51	46612	3	0	2	1	45
SRP_00350	Bacteria_small_SRP links to Rfam database...	0.52	0.33	0.82	9	3905	2	1	1	0	18
SRP_00356	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	5043	7	2	5	0	30
SRP_00357	Bacteria_small_SRP links to Rfam database...	0.29	0.08	1.00	3	5353	0	0	0	0	33
SRP_00358	Bacteria_small_SRP links to Rfam database...	0.29	0.09	1.00	3	6325	0	0	0	0	32
SRP_00367	Bacteria_small_SRP links to Rfam database...	0.29	0.09	1.00	3	6783	0	0	0	0	32
SRP_00368	Metazoa_SRP links to Rfam database...	0.55	0.39	0.78	38	43907	14	0	11	3	60
SRP_00369	Bacteria_small_SRP links to Rfam database...	0.29	0.09	1.00	3	5775	0	0	0	0	32
SRP_00383	Bacteria_small_SRP links to Rfam database...	0.35	0.13	1.00	3	3237	0	0	0	0	21
TMR_00017	tmRNA links to Rfam database...	0.51	0.35	0.75	36	67113	12	1	11	0	66
TMR_00018	tmRNA links to Rfam database...	0.48	0.34	0.69	31	64575	14	3	11	0	61
TMR_00038	tmRNA links to Rfam database...	0.33	0.11	1.00	12	71241	0	0	0	0	98
TMR_00042	tmRNA links to Rfam database...	0.55	0.35	0.87	34	62796	6	1	4	1	64
TMR_00046	tmRNA links to Rfam database...	0.59	0.35	1.00	34	62801	0	0	0	0	62
TMR_00048	tmRNA links to Rfam database...	0.43	0.26	0.71	25	64945	13	1	9	3	70
TMR_00080	tmRNA links to Rfam database...	0.27	0.17	0.44	16	70464	20	7	13	0	80
TMR_00082	tmRNA links to Rfam database...	0.48	0.31	0.75	30	67856	11	5	5	1	66
TMR_00123	tmRNA links to Rfam database...	0.36	0.13	1.00	13	66417	0	0	0	0	88
TMR_00137	tmRNA links to Rfam database...	0.44	0.19	1.00	17	61058	0	0	0	0	72
TMR_00142	tmRNA links to Rfam database...	0.41	0.20	0.87	20	70853	3	0	3	0	82
TMR_00207	tmRNA links to Rfam database...	0.41	0.25	0.67	26	72351	13	2	11	0	77
TMR_00257	tmRNA links to Rfam database...	0.56	0.35	0.92	34	67124	4	2	1	1	64
TMR_00271	tmRNA links to Rfam database...	0.37	0.21	0.66	19	64232	14	4	6	4	72
TMR_00332	tmRNA links to Rfam database...	0.55	0.33	0.92	33	67125	3	2	1	0	66
TMR_00366	tmRNA links to Rfam database...	0.46	0.22	0.96	22	67873	1	0	1	0	78
TMR_00378	tmRNA links to Rfam database...	0.47	0.23	0.96	22	67873	1	0	1	0	75
TMR_00399	tmRNA links to Rfam database...	0.39	0.26	0.59	24	64939	17	5	12	0	70
TMR_00404	tmRNA links to Rfam database...	0.63	0.41	0.95	38	67488	2	1	1	0	54
TMR_00427	tmRNA links to Rfam database...	0.23	0.05	1.00	5	67523	0	0	0	0	92
TMR_00443	tmRNA links to Rfam database...	0.64	0.50	0.81	52	67097	12	1	11	0	52
TMR_00451	tmRNA links to Rfam database...	0.52	0.31	0.85	28	63513	5	0	5	0	61
TMR_00458	tmRNA links to Rfam database...	0.59	0.38	0.92	35	63508	3	2	1	0	58
TMR_00469	tmRNA links to Rfam database...	0.41	0.17	1.00	17	64603	0	0	0	0	83
TMR_00472	tmRNA links to Rfam database...	0.49	0.24	1.00	23	64597	0	0	0	0	74
TMR_00519	tmRNA links to Rfam database...	0.47	0.23	0.96	22	63167	1	1	0	0	73
TMR_00520	tmRNA links to Rfam database...	0.48	0.23	1.00	23	63167	0	0	0	0	76
TMR_00522	tmRNA links to Rfam database...	0.27	0.07	1.00	7	63183	0	0	0	0	90
TMR_00528	tmRNA links to Rfam database...	0.27	0.07	1.00	7	63183	0	0	0	0	90
TMR_00540	tmRNA links to Rfam database...	0.61	0.40	0.91	42	73490	4	1	3	0	62
TMR_00568	tmRNA links to Rfam database...	0.58	0.42	0.79	42	60673	13	1	10	2	57
TMR_00571	tmRNA links to Rfam database...	0.63	0.46	0.85	46	60672	11	1	7	3	53
TMR_00580	tmRNA links to Rfam database...	0.58	0.42	0.81	42	60674	13	1	9	3	58
TMR_00584	tmRNA links to Rfam database...	0.65	0.46	0.92	45	61026	6	0	4	2	52
TMR_00586	tmRNA links to Rfam database...	0.53	0.39	0.72	38	61022	17	4	11	2	59
TMR_00616	tmRNA links to Rfam database...	0.41	0.17	1.00	17	67144	0	0	0	0	82
TMR_00699	tmRNA links to Rfam database...	0.42	0.25	0.74	25	67127	9	3	6	0	77
TMR_00702	tmRNA links to Rfam database...	0.38	0.20	0.71	20	67133	9	2	6	1	80
TMR_00703	tmRNA links to Rfam database...	0.37	0.25	0.54	25	67482	21	3	18	0	74

^top

Performance of UNAFold - scored lower in this pairwise comparison

1. Total counts & total scores for UNAFold

Total Base Pair Counts
Total TP	34481
Total TN	119773179
Total FP	37999
Total FP CONTRA	5340
Total FP INCONS	28683
Total FP COMP	3976
Total FN	35753

Total Scores
MCC	0.497
Average MCC ± 95% Confidence Intervals	0.610 ± 0.018
Sensitivity	0.491
Positive Predictive Value	0.503
Nr of predictions	642

^top

2. Individual counts for UNAFold [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00004	RNaseP_bact_a links to Rfam database...	0.71	0.70	0.72	68	47800	29	9	18	2	29
ASE_00005	RNaseP_bact_a links to Rfam database...	0.60	0.54	0.67	63	57876	35	1	30	4	54
ASE_00006	RNaseP_bact_a links to Rfam database...	0.67	0.66	0.68	61	47496	32	7	22	3	32
ASE_00007	RNaseP_bact_a links to Rfam database...	0.57	0.54	0.60	59	59587	43	1	38	4	51
ASE_00012	RNaseP_bact_a links to Rfam database...	0.52	0.48	0.56	59	73814	52	4	43	5	64
ASE_00018	RNaseP_bact_a links to Rfam database...	0.78	0.73	0.84	98	80484	21	4	15	2	36
ASE_00020	RNaseP_bact_a links to Rfam database...	0.57	0.54	0.60	68	73806	46	7	39	0	58
ASE_00021	RNaseP_bact_a links to Rfam database...	0.58	0.54	0.62	86	104057	60	7	46	7	74
ASE_00022	RNaseP_bact_b links to Rfam database...	0.46	0.45	0.48	56	82911	67	6	55	6	68
ASE_00028	RNaseP_bact_b links to Rfam database...	0.56	0.55	0.57	69	84545	60	8	44	8	57
ASE_00035	RNaseP_bact_a links to Rfam database...	0.30	0.28	0.32	33	70398	76	12	57	7	85
ASE_00037	RNaseP_bact_a links to Rfam database...	0.63	0.59	0.66	65	59242	37	0	33	4	45
ASE_00038	RNaseP_bact_a links to Rfam database...	0.54	0.53	0.54	54	53528	47	4	42	1	47
ASE_00040	RNaseP_bact_a links to Rfam database...	0.48	0.46	0.50	61	78882	66	5	55	6	72
ASE_00041	RNaseP_bact_a links to Rfam database...	0.44	0.41	0.47	44	57537	53	2	47	4	64
ASE_00042	RNaseP_bact_a links to Rfam database...	0.61	0.57	0.64	83	89971	49	2	44	3	62
ASE_00044	RNaseP_bact_a links to Rfam database...	0.69	0.68	0.70	71	54514	34	3	27	4	34
ASE_00045	RNaseP_bact_b links to Rfam database...	0.67	0.66	0.67	53	47199	34	7	19	8	27
ASE_00064	RNaseP_bact_a links to Rfam database...	0.32	0.31	0.32	28	45363	69	4	56	9	61
ASE_00068	RNaseP_bact_a links to Rfam database...	0.52	0.49	0.55	42	37598	35	4	31	0	43
ASE_00074	RNaseP_bact_a links to Rfam database...	0.58	0.57	0.60	68	67782	46	5	41	0	51
ASE_00075	RNaseP_bact_a links to Rfam database...	0.61	0.56	0.68	90	108678	47	3	40	4	72
ASE_00077	RNaseP_bact_a links to Rfam database...	0.52	0.51	0.54	44	45068	38	7	31	0	42
ASE_00078	RNaseP_bact_a links to Rfam database...	0.65	0.63	0.68	52	42994	31	0	25	6	31
ASE_00080	RNaseP_bact_a links to Rfam database...	0.47	0.45	0.49	55	71519	60	5	52	3	68
ASE_00081	RNaseP_bact_a links to Rfam database...	0.56	0.54	0.58	52	49680	39	2	36	1	45
ASE_00082	RNaseP_bact_a links to Rfam database...	0.55	0.51	0.59	59	70400	55	1	40	14	57
ASE_00083	RNaseP_bact_a links to Rfam database...	0.79	0.75	0.83	82	62382	24	2	15	7	28
ASE_00084	RNaseP_bact_a links to Rfam database...	0.69	0.69	0.70	68	53531	32	6	23	3	31
ASE_00087	RNaseP_bact_a links to Rfam database...	0.59	0.54	0.64	78	88288	49	5	39	5	66
ASE_00090	RNaseP_bact_a links to Rfam database...	0.59	0.59	0.59	60	55509	47	2	40	5	41
ASE_00092	RNaseP_bact_a links to Rfam database...	0.69	0.65	0.73	74	63444	33	5	23	5	39
ASE_00099	RNaseP_bact_a links to Rfam database...	0.51	0.50	0.53	60	64506	56	6	48	2	60
ASE_00104	RNaseP_bact_a links to Rfam database...	0.70	0.67	0.73	80	64151	31	5	25	1	39
ASE_00105	RNaseP_bact_a links to Rfam database...	0.36	0.34	0.38	38	64161	64	6	56	2	73
ASE_00107	RNaseP_bact_a links to Rfam database...	0.66	0.65	0.67	82	73031	40	5	35	0	45
ASE_00114	RNaseP_bact_b links to Rfam database...	0.49	0.49	0.49	38	45374	45	6	33	6	39
ASE_00115	RNaseP_bact_a links to Rfam database...	0.49	0.48	0.51	48	54521	53	1	45	7	53
ASE_00118	RNaseP_bact_a links to Rfam database...	0.58	0.56	0.59	57	60630	42	3	36	3	45
ASE_00119	RNaseP_bact_a links to Rfam database...	0.67	0.65	0.69	70	62734	33	1	30	2	38
ASE_00123	RNaseP_bact_a links to Rfam database...	0.28	0.27	0.29	23	38425	59	3	52	4	62
ASE_00125	RNaseP_bact_a links to Rfam database...	0.64	0.63	0.65	55	39255	30	4	26	0	33
ASE_00126	RNaseP_bact_a links to Rfam database...	0.75	0.77	0.74	63	40385	26	3	19	4	19
ASE_00128	RNaseP_bact_a links to Rfam database...	0.65	0.62	0.69	62	53211	36	3	25	8	38
ASE_00129	RNaseP_bact_a links to Rfam database...	0.52	0.50	0.53	56	62730	53	5	44	4	55
ASE_00131	RNaseP_bact_a links to Rfam database...	0.61	0.55	0.68	47	39271	32	0	22	10	38
ASE_00134	RNaseP_bact_a links to Rfam database...	0.41	0.42	0.40	40	50302	64	10	51	3	55
ASE_00135	RNaseP_bact_a links to Rfam database...	0.46	0.45	0.47	49	63085	59	8	48	3	60
ASE_00136	RNaseP_bact_a links to Rfam database...	0.56	0.52	0.60	48	48125	41	1	31	9	44
ASE_00137	RNaseP_bact_a links to Rfam database...	0.67	0.65	0.68	64	48422	32	4	26	2	34
ASE_00138	RNaseP_bact_a links to Rfam database...	0.53	0.52	0.55	42	40393	35	4	31	0	39
ASE_00140	RNaseP_bact_a links to Rfam database...	0.72	0.67	0.77	84	70767	27	4	21	2	41
ASE_00142	RNaseP_bact_a links to Rfam database...	0.74	0.70	0.79	85	67054	26	4	18	4	37
ASE_00146	RNaseP_bact_a links to Rfam database...	0.55	0.52	0.60	64	70769	49	2	41	6	60
ASE_00153	RNaseP_nuc links to Rfam database...	0.67	0.68	0.66	50	57554	68	2	24	42	23
ASE_00161	RNaseP_bact_b links to Rfam database...	0.34	0.36	0.33	31	53533	68	10	54	4	56
ASE_00163	RNaseP_bact_a links to Rfam database...	0.60	0.59	0.62	55	53212	45	2	32	11	38
ASE_00165	RNaseP_bact_a links to Rfam database...	0.54	0.52	0.56	53	52881	42	5	36	1	48
ASE_00170	RNaseP_bact_a links to Rfam database...	0.70	0.68	0.72	63	48740	26	2	23	1	30
ASE_00171	RNaseP_bact_a links to Rfam database...	0.70	0.69	0.71	65	48425	26	5	21	0	29
ASE_00172	RNaseP_bact_a links to Rfam database...	0.69	0.68	0.70	72	58893	36	6	25	5	34
ASE_00174	RNaseP_bact_a links to Rfam database...	0.52	0.51	0.53	56	60970	50	6	43	1	53
ASE_00175	RNaseP_bact_a links to Rfam database...	0.73	0.70	0.76	75	59932	31	2	22	7	32
ASE_00179	RNaseP_bact_a links to Rfam database...	0.65	0.65	0.64	55	44167	31	6	25	0	29
ASE_00180	RNaseP_bact_a links to Rfam database...	0.65	0.62	0.69	62	51270	33	2	26	5	38
ASE_00181	RNaseP_bact_a links to Rfam database...	0.54	0.53	0.55	56	57528	50	3	43	4	50
ASE_00182	RNaseP_bact_a links to Rfam database...	0.53	0.51	0.55	69	84130	59	6	50	3	67
ASE_00183	RNaseP_bact_a links to Rfam database...	0.72	0.71	0.73	80	61316	33	2	27	4	33
ASE_00184	RNaseP_bact_a links to Rfam database...	0.66	0.66	0.66	67	54513	35	9	26	0	35
ASE_00185	RNaseP_bact_a links to Rfam database...	0.74	0.71	0.77	91	73418	33	5	22	6	37
ASE_00186	RNaseP_bact_a links to Rfam database...	0.74	0.70	0.79	92	78886	30	3	22	5	40
ASE_00190	RNaseP_bact_b links to Rfam database...	0.57	0.54	0.60	49	45369	35	6	27	2	41
ASE_00197	RNaseP_bact_a links to Rfam database...	0.54	0.50	0.58	73	89127	58	2	51	5	72
ASE_00198	RNaseP_bact_a links to Rfam database...	0.53	0.53	0.53	54	52549	47	7	40	0	48
ASE_00203	RNaseP_bact_a links to Rfam database...	0.62	0.61	0.63	59	46572	34	6	28	0	37
ASE_00212	RNaseP_bact_a links to Rfam database...	0.51	0.49	0.54	72	93827	66	5	57	4	76
ASE_00214	RNaseP_bact_a links to Rfam database...	0.79	0.77	0.81	79	56182	27	3	16	8	24
ASE_00215	RNaseP_bact_a links to Rfam database...	0.58	0.55	0.62	54	48429	35	7	26	2	45
ASE_00216	RNaseP_bact_a links to Rfam database...	0.66	0.66	0.67	54	39259	28	9	18	1	28
ASE_00217	RNaseP_bact_a links to Rfam database...	0.30	0.29	0.33	26	40390	58	6	48	4	64
ASE_00221	RNaseP_bact_a links to Rfam database...	0.57	0.52	0.64	61	64524	38	3	32	3	56
ASE_00228	RNaseP_bact_a links to Rfam database...	0.53	0.55	0.52	47	46880	44	14	30	0	39
ASE_00229	RNaseP_bact_a links to Rfam database...	0.60	0.60	0.61	52	42401	33	10	23	0	35
ASE_00231	RNaseP_bact_a links to Rfam database...	0.31	0.31	0.31	30	47798	67	8	59	0	66
ASE_00232	RNaseP_bact_a links to Rfam database...	0.59	0.58	0.60	49	38422	34	3	29	2	35
ASE_00234	RNaseP_bact_a links to Rfam database...	0.51	0.47	0.54	61	75354	55	4	47	4	68
ASE_00238	RNaseP_bact_a links to Rfam database...	0.52	0.50	0.53	57	64154	55	1	49	5	57
ASE_00241	RNaseP_bact_a links to Rfam database...	0.55	0.53	0.58	46	43876	41	5	29	7	41
ASE_00242	RNaseP_bact_a links to Rfam database...	0.72	0.68	0.76	76	60975	27	3	21	3	36
ASE_00248	RNaseP_bact_a links to Rfam database...	0.41	0.38	0.44	43	62383	55	3	52	0	71
ASE_00254	RNaseP_bact_a links to Rfam database...	0.74	0.72	0.76	59	36778	24	6	13	5	23
ASE_00255	RNaseP_bact_a links to Rfam database...	0.48	0.45	0.50	59	74573	59	7	52	0	71
ASE_00257	RNaseP_bact_a links to Rfam database...	0.56	0.56	0.57	54	50946	40	9	31	0	43
ASE_00263	RNaseP_bact_a links to Rfam database...	0.62	0.62	0.62	74	70380	47	5	41	1	46
ASE_00267	RNaseP_bact_a links to Rfam database...	0.49	0.45	0.53	40	45074	45	4	32	9	48
ASE_00270	RNaseP_bact_a links to Rfam database...	0.68	0.66	0.69	85	72267	40	7	31	2	43
ASE_00274	RNaseP_bact_a links to Rfam database...	0.50	0.49	0.51	50	55513	48	9	39	0	53
ASE_00277	RNaseP_bact_a links to Rfam database...	0.39	0.38	0.39	35	48115	57	9	46	2	56
ASE_00279	RNaseP_bact_a links to Rfam database...	0.70	0.66	0.74	67	53210	28	0	24	4	34
ASE_00280	RNaseP_bact_a links to Rfam database...	0.62	0.60	0.64	59	51911	38	4	29	5	39
ASE_00281	RNaseP_bact_a links to Rfam database...	0.54	0.51	0.58	45	44473	39	0	33	6	43
ASE_00282	RNaseP_bact_a links to Rfam database...	0.55	0.54	0.56	69	77692	54	6	48	0	58
ASE_00283	RNaseP_bact_a links to Rfam database...	0.82	0.79	0.86	84	61678	22	2	12	8	23
ASE_00284	RNaseP_bact_a links to Rfam database...	0.63	0.61	0.65	66	58209	41	5	31	5	42
ASE_00285	RNaseP_bact_a links to Rfam database...	0.69	0.65	0.73	79	68898	36	2	27	7	43
ASE_00286	RNaseP_bact_a links to Rfam database...	0.43	0.42	0.43	39	46574	61	3	49	9	53
ASE_00287	RNaseP_bact_a links to Rfam database...	0.70	0.66	0.75	68	54855	30	2	21	7	35
ASE_00292	RNaseP_bact_a links to Rfam database...	0.64	0.59	0.70	82	81693	38	3	32	3	56
ASE_00294	RNaseP_bact_a links to Rfam database...	0.78	0.74	0.83	127	114328	29	3	23	3	44
ASE_00296	RNaseP_bact_a links to Rfam database...	0.29	0.28	0.31	40	91676	90	9	81	0	105
ASE_00297	RNaseP_bact_a links to Rfam database...	0.68	0.67	0.69	66	52879	30	4	26	0	32
ASE_00298	RNaseP_bact_a links to Rfam database...	0.46	0.44	0.48	50	67423	59	6	49	4	63
ASE_00305	RNaseP_bact_b links to Rfam database...	0.67	0.68	0.65	58	54526	37	14	17	6	27
ASE_00318	RNaseP_bact_b links to Rfam database...	0.65	0.64	0.67	75	80088	41	13	24	4	43
ASE_00321	RNaseP_bact_b links to Rfam database...	0.56	0.56	0.56	49	54528	41	7	31	3	39
ASE_00328	RNaseP_bact_b links to Rfam database...	0.40	0.40	0.41	45	72660	73	3	63	7	67
ASE_00332	RNaseP_bact_a links to Rfam database...	0.54	0.51	0.56	71	81683	57	2	54	1	67
ASE_00335	RNaseP_bact_b links to Rfam database...	0.48	0.47	0.50	54	75358	61	5	49	7	62
ASE_00340	RNaseP_bact_a links to Rfam database...	0.75	0.74	0.76	63	45973	29	6	14	9	22
ASE_00342	RNaseP_bact_a links to Rfam database...	0.56	0.51	0.60	59	62383	39	2	37	0	56
ASE_00353	RNaseP_bact_a links to Rfam database...	0.49	0.50	0.48	53	57859	58	11	47	0	54
ASE_00361	RNaseP_bact_a links to Rfam database...	0.49	0.46	0.51	59	75351	59	7	49	3	68
ASE_00362	RNaseP_bact_a links to Rfam database...	0.62	0.62	0.63	56	48116	36	6	27	3	35
ASE_00363	RNaseP_bact_a links to Rfam database...	0.55	0.55	0.54	52	51264	47	4	40	3	42
ASE_00364	RNaseP_bact_a links to Rfam database...	0.31	0.30	0.32	32	54184	72	7	62	3	73
ASE_00366	RNaseP_bact_a links to Rfam database...	0.56	0.58	0.54	57	58547	50	10	39	1	41
ASE_00367	RNaseP_bact_a links to Rfam database...	0.55	0.56	0.55	48	42983	43	6	34	3	38
ASE_00369	RNaseP_bact_a links to Rfam database...	0.65	0.63	0.67	67	55845	37	3	30	4	40
ASE_00370	RNaseP_bact_a links to Rfam database...	0.67	0.65	0.69	55	41825	25	7	18	0	29
ASE_00372	RNaseP_bact_a links to Rfam database...	0.70	0.69	0.71	69	51906	31	5	23	3	31
ASE_00374	RNaseP_bact_a links to Rfam database...	0.56	0.56	0.57	49	44764	37	8	29	0	39
ASE_00376	RNaseP_bact_a links to Rfam database...	0.52	0.50	0.55	53	56856	47	4	40	3	52
ASE_00377	RNaseP_bact_a links to Rfam database...	0.68	0.66	0.70	71	57529	36	4	26	6	36
ASE_00379	RNaseP_bact_a links to Rfam database...	0.70	0.69	0.71	61	45970	34	3	22	9	28
ASE_00382	RNaseP_bact_a links to Rfam database...	0.53	0.52	0.54	44	41824	40	6	31	3	40
ASE_00383	RNaseP_bact_a links to Rfam database...	0.53	0.50	0.55	53	54519	47	4	39	4	52
ASE_00384	RNaseP_bact_a links to Rfam database...	0.60	0.59	0.61	54	48428	39	2	32	5	38
ASE_00386	RNaseP_bact_a links to Rfam database...	0.62	0.61	0.63	59	50309	42	2	33	7	37
ASE_00387	RNaseP_bact_a links to Rfam database...	0.44	0.44	0.44	46	55841	58	6	52	0	58
ASE_00388	RNaseP_bact_a links to Rfam database...	0.73	0.73	0.74	65	45665	28	3	20	5	24
ASE_00390	RNaseP_bact_a links to Rfam database...	0.49	0.47	0.51	40	42117	45	6	32	7	45
ASE_00393	RNaseP_bact_a links to Rfam database...	0.36	0.34	0.38	32	47810	59	3	50	6	61
ASE_00394	RNaseP_bact_a links to Rfam database...	0.75	0.75	0.75	70	46878	26	5	18	3	23
ASE_00395	RNaseP_bact_a links to Rfam database...	0.55	0.58	0.52	49	41521	46	8	38	0	35
ASE_00396	RNaseP_bact_a links to Rfam database...	0.57	0.58	0.56	48	41530	43	8	30	5	35
ASE_00397	RNaseP_bact_a links to Rfam database...	0.57	0.57	0.58	60	54511	46	3	41	2	45
ASE_00398	RNaseP_bact_a links to Rfam database...	0.66	0.64	0.68	67	55846	35	3	29	3	37
ASE_00400	RNaseP_bact_a links to Rfam database...	0.56	0.55	0.57	58	57869	44	4	39	1	48
ASE_00401	RNaseP_bact_a links to Rfam database...	0.56	0.56	0.56	70	76904	54	11	43	0	56
ASE_00402	RNaseP_bact_a links to Rfam database...	0.62	0.61	0.63	52	42403	34	6	25	3	33
ASE_00403	RNaseP_bact_a links to Rfam database...	0.46	0.44	0.47	47	55846	53	3	49	1	60
ASE_00404	RNaseP_bact_a links to Rfam database...	0.55	0.54	0.57	46	42990	42	0	35	7	39
ASE_00406	RNaseP_bact_a links to Rfam database...	0.70	0.67	0.73	63	48742	27	8	15	4	31
ASE_00411	RNaseP_bact_a links to Rfam database...	0.35	0.36	0.34	32	49362	61	11	50	0	57
ASE_00412	RNaseP_bact_a links to Rfam database...	0.45	0.44	0.47	46	58213	54	8	44	2	59
ASE_00413	RNaseP_bact_a links to Rfam database...	0.53	0.56	0.51	45	44462	44	14	30	0	36
ASE_00415	RNaseP_bact_a links to Rfam database...	0.43	0.44	0.42	45	54840	63	9	52	2	58
ASE_00416	RNaseP_bact_a links to Rfam database...	0.70	0.67	0.73	85	77305	38	2	29	7	42
ASE_00419	RNaseP_bact_a links to Rfam database...	0.77	0.74	0.81	76	54852	22	4	14	4	27
ASE_00422	RNaseP_bact_a links to Rfam database...	0.70	0.68	0.73	64	46883	31	5	19	7	30
ASE_00423	RNaseP_bact_a links to Rfam database...	0.50	0.49	0.52	53	56852	51	7	41	3	56
ASE_00427	RNaseP_nuc links to Rfam database...	0.15	0.20	0.12	9	40677	83	23	46	14	37
ASE_00428	RNaseP_bact_a links to Rfam database...	0.53	0.51	0.56	64	76521	55	5	46	4	61
ASE_00430	RNaseP_bact_a links to Rfam database...	0.64	0.62	0.66	60	46880	38	5	26	7	37
ASE_00437	RNaseP_bact_a links to Rfam database...	0.42	0.40	0.44	54	79278	69	5	64	0	81
ASE_00441	RNaseP_bact_a links to Rfam database...	0.77	0.72	0.82	81	64162	30	2	16	12	31
ASE_00448	RNaseP_bact_a links to Rfam database...	0.22	0.22	0.23	25	64150	92	6	80	6	87
ASE_00451	RNaseP_bact_a links to Rfam database...	0.63	0.59	0.68	74	70767	38	2	33	3	51
CRW_00024	SSU_rRNA_archaea links to Rfam database...	0.77	0.76	0.78	347	1085158	132	19	77	36	111
CRW_00034	SSU_rRNA_bacteria links to Rfam database...	0.64	0.64	0.64	303	1141840	196	31	142	23	171
CRW_00048	SSU_rRNA_bacteria links to Rfam database...	0.52	0.51	0.53	241	1170762	229	24	188	17	229
CRW_00054	SSU_rRNA_bacteria links to Rfam database...	0.44	0.43	0.44	195	1107376	258	28	217	13	261
CRW_00059	SSU_rRNA_bacteria links to Rfam database...	0.49	0.48	0.50	227	1172295	238	32	192	14	246
CRW_00061	SSU_rRNA_bacteria links to Rfam database...	0.51	0.51	0.52	241	1181493	233	41	178	14	235
CRW_00068	SSU_rRNA_bacteria links to Rfam database...	0.46	0.46	0.47	209	1108862	250	23	211	16	248
CRW_00096	SSU_rRNA_bacteria links to Rfam database...	0.55	0.54	0.55	250	1178428	227	29	173	25	215
CRW_00140	SSU_rRNA_bacteria links to Rfam database...	0.66	0.65	0.67	303	1135826	172	19	130	23	160
CRW_00141	SSU_rRNA_bacteria links to Rfam database...	0.58	0.58	0.59	275	1201557	219	25	168	26	201
CRW_00150	SSU_rRNA_bacteria links to Rfam database...	0.41	0.41	0.42	190	1152471	280	32	228	20	276
CRW_00152	SSU_rRNA_bacteria links to Rfam database...	0.65	0.63	0.66	299	1179965	174	29	123	22	172
CRW_00166	SSU_rRNA_bacteria links to Rfam database...	0.45	0.44	0.45	207	1190736	269	34	219	16	261
CRW_00173	SSU_rRNA_bacteria links to Rfam database...	0.28	0.28	0.29	126	1082215	327	39	276	12	319
CRW_00177	SSU_rRNA_bacteria links to Rfam database...	0.51	0.49	0.53	234	1178440	221	29	177	15	239
CRW_00196	SSU_rRNA_bacteria links to Rfam database...	0.45	0.44	0.45	211	1207765	281	32	227	22	264
CRW_00230	SSU_rRNA_bacteria links to Rfam database...	0.55	0.54	0.57	256	1198474	218	27	169	22	222
CRW_00245	SSU_rRNA_bacteria links to Rfam database...	0.36	0.36	0.37	163	1105885	293	45	235	13	290
CRW_00248	SSU_rRNA_bacteria links to Rfam database...	0.58	0.57	0.58	276	1218667	230	24	174	32	208
CRW_00250	SSU_rRNA_bacteria links to Rfam database...	0.39	0.39	0.39	186	1198451	301	43	246	12	292
CRW_00256	SSU_rRNA_bacteria links to Rfam database...	0.50	0.49	0.52	228	1192304	228	35	173	20	240
CRW_00270	SSU_rRNA_bacteria links to Rfam database...	0.47	0.45	0.48	207	1111853	250	29	197	24	248
CRW_00271	SSU_rRNA_bacteria links to Rfam database...	0.48	0.47	0.50	217	1122314	236	33	187	16	245
CRW_00273	SSU_rRNA_bacteria links to Rfam database...	0.51	0.50	0.52	222	1085175	222	28	176	18	224
CRW_00275	SSU_rRNA_bacteria links to Rfam database...	0.68	0.68	0.69	310	1114822	160	19	120	21	147
CRW_00277	SSU_rRNA_bacteria links to Rfam database...	0.35	0.34	0.35	154	1110361	293	42	238	13	299
CRW_00278	SSU_rRNA_bacteria links to Rfam database...	0.43	0.41	0.44	186	1129832	259	29	209	21	264
CRW_00279	SSU_rRNA_bacteria links to Rfam database...	0.44	0.42	0.45	197	1179977	258	31	211	16	267
CRW_00280	SSU_rRNA_bacteria links to Rfam database...	0.68	0.67	0.68	302	1117819	159	19	120	20	151
CRW_00281	SSU_rRNA_bacteria links to Rfam database...	0.65	0.63	0.67	291	1144909	165	18	123	24	173
CRW_00284	SSU_rRNA_bacteria links to Rfam database...	0.29	0.28	0.29	129	1131319	325	39	273	13	327
CRW_00285	SSU_rRNA_bacteria links to Rfam database...	0.75	0.74	0.76	338	1117818	130	22	82	26	120
CRW_00289	SSU_rRNA_bacteria links to Rfam database...	0.44	0.43	0.45	203	1189200	274	30	220	24	273
CRW_00298	SSU_rRNA_eukarya links to Rfam database...	0.22	0.23	0.22	114	1620379	443	82	325	36	380
CRW_00301	SSU_rRNA_eukarya links to Rfam database...	0.31	0.31	0.30	163	1761959	431	87	294	50	356
CRW_00306	SSU_rRNA_eukarya links to Rfam database...	0.16	0.16	0.16	76	1445368	444	67	339	38	386
CRW_00310	SSU_rRNA_eukarya links to Rfam database...	0.26	0.27	0.26	141	1805406	466	81	322	63	380
CRW_00326	SSU_rRNA_eukarya links to Rfam database...	0.35	0.35	0.35	176	1627600	377	65	269	43	326
CRW_00330	SSU_rRNA_eukarya links to Rfam database...	0.29	0.31	0.28	158	1988457	459	73	327	59	359
CRW_00332	SSU_rRNA_eukarya links to Rfam database...	0.21	0.22	0.20	104	1769488	470	103	326	41	373
CRW_00333	SSU_rRNA_eukarya links to Rfam database...	0.33	0.33	0.32	169	1891961	426	77	278	71	345
CRW_00345	SSU_rRNA_eukarya links to Rfam database...	0.27	0.28	0.27	138	1586355	422	75	303	44	360
CRW_00346	SSU_rRNA_eukarya links to Rfam database...	0.30	0.31	0.29	155	1584555	401	76	304	21	346
CRW_00348	SSU_rRNA_eukarya links to Rfam database...	0.26	0.26	0.26	131	1615002	412	57	313	42	372
CRW_00358	SSU_rRNA_eukarya links to Rfam database...	0.39	0.39	0.39	200	1674848	370	67	250	53	307
CRW_00366	SSU_rRNA_eukarya links to Rfam database...	0.33	0.35	0.32	167	1579237	391	83	266	42	315
CRW_00370	SSU_rRNA_eukarya links to Rfam database...	0.25	0.26	0.25	130	1640246	437	74	316	47	376
CRW_00371	SSU_rRNA_eukarya links to Rfam database...	0.31	0.32	0.30	159	1611384	399	75	292	32	337
CRW_00372	SSU_rRNA_eukarya links to Rfam database...	0.36	0.36	0.36	180	1625800	366	59	267	40	318
CRW_00379	SSU_rRNA_eukarya links to Rfam database...	0.40	0.40	0.39	215	2126404	429	56	278	95	319
CRW_00386	SSU_rRNA_eukarya links to Rfam database...	0.25	0.27	0.24	137	1750675	476	78	366	32	378
CRW_00403	SSU_rRNA_eukarya links to Rfam database...	0.31	0.31	0.30	146	1606048	418	64	270	84	318
CRW_00411	SSU_rRNA_eukarya links to Rfam database...	0.27	0.28	0.27	138	1614990	413	60	315	38	358
CRW_00414	SSU_rRNA_eukarya links to Rfam database...	0.30	0.31	0.29	154	1665688	426	77	306	43	341
CRW_00466	SSU_rRNA_bacteria links to Rfam database...	0.59	0.58	0.61	265	1116332	195	23	145	27	193
CRW_00548	5S_rRNA links to Rfam database...	0.84	0.76	0.94	29	7350	4	0	2	2	9
CRW_00552	5S_rRNA links to Rfam database...	0.33	0.31	0.36	12	7107	22	2	19	1	27
CRW_00555	5S_rRNA links to Rfam database...	0.78	0.70	0.88	28	7594	5	0	4	1	12
CRW_00567	5S_rRNA links to Rfam database...	0.69	0.63	0.76	25	7470	10	2	6	2	15
CRW_00570	5S_rRNA links to Rfam database...	0.88	0.89	0.87	33	6865	8	0	5	3	4
CRW_00573	5S_rRNA links to Rfam database...	0.26	0.25	0.28	10	7104	26	0	26	0	30
CRW_00589	SSU_rRNA_bacteria links to Rfam database...	0.28	0.27	0.29	121	1094037	315	38	264	13	324
CRW_00590	SSU_rRNA_bacteria links to Rfam database...	0.35	0.34	0.37	153	1119337	287	30	236	21	299
CRW_00591	SSU_rRNA_bacteria links to Rfam database...	0.56	0.54	0.58	243	1098483	208	22	155	31	203
CRW_00598	SSU_rRNA_eukarya links to Rfam database...	0.36	0.37	0.35	183	1665703	391	62	277	52	308
CRW_00758	SSU_rRNA_eukarya links to Rfam database...	0.28	0.29	0.27	138	1640264	418	60	304	54	345
CRW_00759	SSU_rRNA_eukarya links to Rfam database...	0.23	0.24	0.22	117	1636617	466	66	345	55	364
CRW_00760	SSU_rRNA_eukarya links to Rfam database...	0.31	0.31	0.32	151	1638482	393	57	265	71	335
CRW_00772	SSU_rRNA_bacteria links to Rfam database...	0.25	0.25	0.26	101	945612	317	39	248	30	303
CRW_00789	SSU_rRNA_bacteria links to Rfam database...	0.34	0.33	0.34	147	1137356	300	35	248	17	300
CRW_00795	SSU_rRNA_bacteria links to Rfam database...	0.19	0.20	0.19	78	1152508	377	53	282	42	316
CRW_00849	SSU_rRNA_bacteria links to Rfam database...	0.48	0.48	0.49	225	1117800	258	25	210	23	245
CRW_00997	SSU_rRNA_bacteria links to Rfam database...	0.59	0.58	0.61	268	1135838	197	24	148	25	196
CRW_01153	SSU_rRNA_eukarya links to Rfam database...	0.25	0.25	0.25	128	1606016	421	65	319	37	375
CRW_01171	SSU_rRNA_eukarya links to Rfam database...	0.24	0.24	0.24	123	1593484	433	84	314	35	383
CRW_01300	SSU_rRNA_eukarya links to Rfam database...	0.37	0.37	0.36	193	1693178	383	91	258	34	322
CRW_01484	5S_rRNA links to Rfam database...	0.18	0.18	0.18	7	7464	33	4	28	1	32
CRW_01485	5S_rRNA links to Rfam database...	0.19	0.18	0.21	7	7469	27	1	26	0	32
CRW_01487	5S_rRNA links to Rfam database...	0.16	0.15	0.18	6	7469	28	3	25	0	35
CRW_01489	5S_rRNA links to Rfam database...	0.82	0.74	0.91	29	7471	5	0	3	2	10
CRW_01491	5S_rRNA links to Rfam database...	0.73	0.65	0.82	28	8351	9	0	6	3	15
CRW_01492	5S_rRNA links to Rfam database...	0.76	0.74	0.78	31	7586	14	0	9	5	11
CRW_01494	5S_rRNA links to Rfam database...	0.72	0.68	0.77	27	7105	9	0	8	1	13
CRW_01497	5S_rRNA links to Rfam database...	0.85	0.78	0.94	31	7107	5	0	2	3	9
CRW_01498	5S_rRNA links to Rfam database...	0.88	0.81	0.95	35	8091	4	0	2	2	8
CRW_01499	5S_rRNA links to Rfam database...	0.58	0.56	0.61	23	7963	16	2	13	1	18
CRW_01500	5S_rRNA links to Rfam database...	0.86	0.79	0.94	30	7718	5	0	2	3	8
CRW_01501	5S_rRNA links to Rfam database...	0.87	0.84	0.90	38	8473	7	0	4	3	7
CRW_01508	5S_rRNA links to Rfam database...	0.90	0.86	0.95	36	7963	7	0	2	5	6
CRW_01532	5S_rRNA links to Rfam database...	0.74	0.70	0.79	26	7107	12	0	7	5	11
CRW_01533	5S_rRNA links to Rfam database...	0.80	0.76	0.85	28	7107	11	0	5	6	9
CRW_01534	5S_rRNA links to Rfam database...	0.79	0.76	0.82	28	7106	11	0	6	5	9
CRW_01535	5S_rRNA links to Rfam database...	0.83	0.76	0.90	28	7109	7	0	3	4	9
CRW_01536	5S_rRNA links to Rfam database...	0.88	0.86	0.89	32	6985	4	0	4	0	5
CRW_01537	5S_rRNA links to Rfam database...	0.73	0.65	0.83	24	7111	11	0	5	6	13
CRW_01539	5S_rRNA links to Rfam database...	0.81	0.73	0.90	27	7110	9	0	3	6	10
CRW_01540	5S_rRNA links to Rfam database...	0.63	0.59	0.67	22	7107	15	0	11	4	15
CRW_01541	5S_rRNA links to Rfam database...	0.87	0.84	0.91	31	7106	7	0	3	4	6
CRW_01542	5S_rRNA links to Rfam database...	0.86	0.81	0.91	30	7107	7	0	3	4	7
CRW_01544	5S_rRNA links to Rfam database...	0.86	0.84	0.89	31	7105	7	0	4	3	6
CRW_01548	5S_rRNA links to Rfam database...	0.77	0.73	0.82	27	6988	11	0	6	5	10
CRW_01555	5S_rRNA links to Rfam database...	0.83	0.76	0.90	28	9014	9	0	3	6	9
CRW_01556	5S_rRNA links to Rfam database...	0.71	0.70	0.72	26	7104	14	0	10	4	11
CRW_01557	5S_rRNA links to Rfam database...	0.90	0.86	0.94	32	7106	6	0	2	4	5
CRW_01559	5S_rRNA links to Rfam database...	0.77	0.73	0.82	27	7227	12	0	6	6	10
CRW_01562	5S_rRNA links to Rfam database...	0.83	0.78	0.88	29	7107	9	0	4	5	8
CRW_01563	5S_rRNA links to Rfam database...	0.61	0.54	0.69	20	6874	10	2	7	1	17
CRW_01566	5S_rRNA links to Rfam database...	0.76	0.73	0.79	27	7106	11	0	7	4	10
CRW_01568	5S_rRNA links to Rfam database...	0.79	0.76	0.82	28	7106	11	0	6	5	9
CRW_01569	5S_rRNA links to Rfam database...	0.80	0.76	0.85	28	7107	10	0	5	5	9
CRW_01570	5S_rRNA links to Rfam database...	0.80	0.73	0.87	27	7109	10	0	4	6	10
CRW_01572	5S_rRNA links to Rfam database...	0.27	0.24	0.30	9	6991	21	4	17	0	28
CRW_01573	5S_rRNA links to Rfam database...	0.80	0.76	0.85	28	7227	9	0	5	4	9
CRW_01578	5S_rRNA links to Rfam database...	0.79	0.70	0.90	26	7111	7	0	3	4	11
CRW_01580	5S_rRNA links to Rfam database...	0.62	0.54	0.71	20	7112	14	0	8	6	17
CRW_01581	5S_rRNA links to Rfam database...	0.30	0.27	0.34	10	7111	20	0	19	1	27
CRW_01583	5S_rRNA links to Rfam database...	0.80	0.76	0.85	28	7107	9	0	5	4	9
CRW_01584	5S_rRNA links to Rfam database...	0.90	0.89	0.92	33	7104	7	0	3	4	4
CRW_01590	5S_rRNA links to Rfam database...	0.29	0.30	0.29	11	7102	27	6	21	0	26
CRW_01593	5S_rRNA links to Rfam database...	0.80	0.76	0.85	28	7107	10	0	5	5	9
CRW_01595	5S_rRNA links to Rfam database...	0.74	0.70	0.79	26	8482	12	0	7	5	11
CRW_01599	5S_rRNA links to Rfam database...	0.75	0.70	0.81	26	7108	10	0	6	4	11
CRW_01603	5S_rRNA links to Rfam database...	0.84	0.78	0.91	29	7108	7	0	3	4	8
CRW_01605	5S_rRNA links to Rfam database...	0.72	0.65	0.80	24	7110	10	0	6	4	13
CRW_01606	5S_rRNA links to Rfam database...	0.78	0.70	0.87	26	7110	7	0	4	3	11
CRW_01608	5S_rRNA links to Rfam database...	0.86	0.81	0.91	30	8352	4	0	3	1	7
CRW_01616	5S_rRNA links to Rfam database...	0.80	0.76	0.85	28	7107	11	0	5	6	9
CRW_01617	5S_rRNA links to Rfam database...	0.90	0.86	0.94	32	7106	6	0	2	4	5
CRW_01620	5S_rRNA links to Rfam database...	0.89	0.89	0.89	33	6984	7	0	4	3	4
CRW_01621	5S_rRNA links to Rfam database...	0.70	0.68	0.74	25	7106	13	0	9	4	12
CRW_01623	5S_rRNA links to Rfam database...	0.87	0.81	0.94	30	7108	3	0	2	1	7
CRW_01625	5S_rRNA links to Rfam database...	0.88	0.86	0.89	32	7104	7	0	4	3	5
PDB_00012	mir-TAR links to Rfam database...	1.00	1.00	1.00	7	399	3	0	0	3	0
PDB_00070	tRNA links to Rfam database...	0.93	0.88	1.00	21	2829	0	0	0	0	3
PDB_00213	Gammaretro_CES links to Rfam database...	0.92	0.85	1.00	35	5015	0	0	0	0	6
PDB_00229	tRNA links to Rfam database...	0.44	0.43	0.45	10	2753	12	3	9	0	13
PDB_00327	tRNA links to Rfam database...	0.56	0.52	0.60	12	3061	8	0	8	0	11
PDB_00362	tRNA links to Rfam database...	0.98	0.95	1.00	21	2829	0	0	0	0	1
PDB_00402	tRNA links to Rfam database...	0.27	0.30	0.26	7	2748	20	2	18	0	16
PDB_00431	tRNA links to Rfam database...	0.77	0.75	0.79	15	2192	5	0	4	1	5
PDB_00474	tRNA links to Rfam database...	0.29	0.30	0.29	7	2677	17	0	17	0	16
PDB_00553	mir-TAR links to Rfam database...	1.00	1.00	1.00	11	454	0	0	0	0	0
PDB_00571	tRNA links to Rfam database...	0.21	0.20	0.24	5	3300	16	6	10	0	20
PDB_00667	tRNA links to Rfam database...	0.71	0.68	0.75	15	2830	7	4	1	2	7
PDB_00703	SSU_rRNA_bacteria links to Rfam database...	0.54	0.52	0.57	258	1073389	221	20	178	23	237
PDB_00741	Entero_5_CRE links to Rfam database...	0.87	0.76	1.00	13	690	0	0	0	0	4
PDB_00810	s2m links to Rfam database...	0.91	0.82	1.00	14	1067	0	0	0	0	3
PDB_00828	Purine links to Rfam database...	0.88	0.78	1.00	21	2464	0	0	0	0	6
PDB_00829	Purine links to Rfam database...	0.86	0.75	1.00	18	2260	0	0	0	0	6
PDB_00854	SSU_rRNA_bacteria links to Rfam database...	0.54	0.53	0.54	285	1500255	284	22	216	46	250
PDB_00876	HIV_FE links to Rfam database...	0.97	0.95	1.00	19	971	0	0	0	0	1
PDB_01002	tRNA links to Rfam database...	0.95	0.90	1.00	19	2756	2	0	0	2	2
PDB_01020	Purine links to Rfam database...	0.86	0.74	1.00	17	2261	1	0	0	1	6
PDB_01050	UnaL2 links to Rfam database...	0.92	0.85	1.00	11	619	2	0	0	2	2
PDB_01053	tRNA links to Rfam database...	1.00	1.00	1.00	16	1362	0	0	0	0	0
PDB_01073	SAM links to Rfam database...	0.52	0.47	0.57	16	4343	13	2	10	1	18
PDB_01088	SSU_rRNA_bacteria links to Rfam database...	0.39	0.37	0.41	202	1470973	322	44	251	27	345
PDB_01103	SSU_rRNA_bacteria links to Rfam database...	0.59	0.58	0.60	324	1605991	243	32	181	30	238
PDB_01105	SSU_rRNA_bacteria links to Rfam database...	0.60	0.58	0.61	315	1433457	227	14	185	28	225
PDB_01114	TPP links to Rfam database...	0.44	0.37	0.53	10	2831	9	0	9	0	17
PDB_01120	SSU_rRNA_bacteria links to Rfam database...	0.47	0.44	0.50	232	1204667	242	27	202	13	295
PDB_01152	HIV_FS2 links to Rfam database...	0.92	0.86	1.00	12	549	0	0	0	0	2
PDB_01236	ykoK links to Rfam database...	0.73	0.69	0.77	37	11580	14	0	11	3	17
PDB_01273	SSU_rRNA_bacteria links to Rfam database...	0.50	0.48	0.53	235	1117815	238	14	196	28	256
RFA_00389	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00390	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00391	Hammerhead_3 links to Rfam database...	0.93	0.87	1.00	13	1418	2	0	0	2	2
RFA_00396	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	2	0	0	2	1
RFA_00402	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	0	0	0	0	0
RFA_00409	Hammerhead_3 links to Rfam database...	0.55	0.53	0.57	8	1417	7	1	5	1	7
RFA_00416	Hammerhead_3 links to Rfam database...	0.93	0.93	0.93	14	1470	4	0	1	3	1
RFA_00433	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00434	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00436	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00440	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1470	2	0	0	2	0
RFA_00442	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00444	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1525	1	0	0	1	0
RFA_00583	Y_RNA links to Rfam database...	0.55	0.53	0.57	8	4936	20	0	6	14	7
RFA_00584	Y_RNA links to Rfam database...	0.87	0.87	0.87	13	2911	14	0	2	12	2
RFA_00585	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4836	11	0	0	11	0
RFA_00586	Y_RNA links to Rfam database...	0.86	0.73	1.00	11	3905	11	0	0	11	4
RFA_00587	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4836	12	0	0	12	0
RFA_00588	Y_RNA links to Rfam database...	0.93	0.87	1.00	13	4547	12	0	0	12	2
RFA_00589	Y_RNA links to Rfam database...	0.93	0.87	1.00	13	4358	12	0	0	12	2
RFA_00594	Y_RNA links to Rfam database...	0.97	0.93	1.00	14	2761	8	0	0	8	1
RFA_00596	Y_RNA links to Rfam database...	0.00	0.00	0.00	0	5982	22	4	9	9	15
RFA_00599	Telomerase-vert links to Rfam database...	0.67	0.70	0.63	78	101352	64	17	28	19	33
RFA_00601	Telomerase-vert links to Rfam database...	0.47	0.49	0.44	56	99109	89	21	49	19	58
RFA_00602	Telomerase-vert links to Rfam database...	0.51	0.53	0.48	62	101347	86	18	48	20	54
RFA_00658	Hammerhead_1 links to Rfam database...	0.59	0.50	0.70	7	1118	5	0	3	2	7
RFA_00664	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	980	11	0	10	1	14
RFA_00667	Hammerhead_1 links to Rfam database...	0.30	0.29	0.33	4	978	8	1	7	0	10
RFA_00668	Hammerhead_1 links to Rfam database...	0.41	0.43	0.40	6	975	9	0	9	0	8
RFA_00672	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	895	9	0	8	1	13
RFA_00673	Hammerhead_1 links to Rfam database...	0.42	0.36	0.50	5	1118	6	0	5	1	9
RFA_00674	Hammerhead_1 links to Rfam database...	0.71	0.71	0.71	10	1114	5	0	4	1	4
RFA_00675	Hammerhead_1 links to Rfam database...	0.29	0.29	0.31	4	977	9	1	8	0	10
RFA_00677	Hammerhead_1 links to Rfam database...	0.42	0.43	0.43	6	976	9	0	8	1	8
RFA_00678	Hammerhead_1 links to Rfam database...	0.43	0.29	0.67	4	940	2	0	2	0	10
RFA_00680	Hammerhead_1 links to Rfam database...	0.74	0.71	0.77	10	1115	6	0	3	3	4
RFA_00704	Hammerhead_1 links to Rfam database...	0.32	0.21	0.50	3	984	4	0	3	1	11
RFA_00707	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	1026	9	3	6	0	14
RFA_00715	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	936	10	0	10	0	14
RFA_00717	Hammerhead_1 links to Rfam database...	0.64	0.64	0.64	9	889	5	0	5	0	5
RFA_00730	s2m links to Rfam database...	0.69	0.67	0.73	8	892	4	1	2	1	4
RFA_00731	s2m links to Rfam database...	0.69	0.67	0.73	8	892	4	1	2	1	4
RFA_00733	s2m links to Rfam database...	0.69	0.67	0.73	8	892	4	1	2	1	4
RFA_00734	s2m links to Rfam database...	0.64	0.67	0.62	8	890	5	1	4	0	4
RFA_00736	s2m links to Rfam database...	0.69	0.67	0.73	8	892	4	1	2	1	4
RFA_00737	s2m links to Rfam database...	1.00	1.00	1.00	12	891	1	0	0	1	0
RFA_00745	s2m links to Rfam database...	1.00	1.00	1.00	12	934	1	0	0	1	0
RFA_00749	s2m links to Rfam database...	0.69	0.67	0.73	8	892	4	1	2	1	4
RFA_00758	s2m links to Rfam database...	0.96	0.92	1.00	11	892	0	0	0	0	1
RFA_00762	s2m links to Rfam database...	0.64	0.67	0.62	8	890	5	1	4	0	4
RFA_00763	s2m links to Rfam database...	1.00	1.00	1.00	12	891	0	0	0	0	0
RFA_00764	s2m links to Rfam database...	0.69	0.67	0.73	8	892	4	1	2	1	4
RFA_00765	s2m links to Rfam database...	1.00	1.00	1.00	12	891	1	0	0	1	0
RFA_00786	Gammaretro_CES links to Rfam database...	0.71	0.72	0.70	23	5017	10	2	8	0	9
RFA_00791	Gammaretro_CES links to Rfam database...	0.95	0.91	1.00	29	5122	1	0	0	1	3
RFA_00792	Gammaretro_CES links to Rfam database...	0.94	0.94	0.94	30	5018	4	0	2	2	2
RFA_00801	Gammaretro_CES links to Rfam database...	0.85	0.81	0.90	26	5021	4	0	3	1	6
SPR_00007	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00009	tRNA links to Rfam database...	0.97	0.95	1.00	19	2831	0	0	0	0	1
SPR_00010	tRNA links to Rfam database...	0.47	0.48	0.48	10	2829	11	3	8	0	11
SPR_00012	tRNA links to Rfam database...	0.24	0.25	0.24	5	2829	16	2	14	0	15
SPR_00013	tRNA links to Rfam database...	0.97	0.95	1.00	19	2831	0	0	0	0	1
SPR_00016	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00017	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00025	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	1	0	0	1	0
SPR_00026	tRNA links to Rfam database...	0.60	0.57	0.63	12	2907	8	0	7	1	9
SPR_00027	tRNA links to Rfam database...	0.38	0.38	0.38	8	2905	14	0	13	1	13
SPR_00036	tRNA links to Rfam database...	0.84	0.80	0.89	16	2757	3	0	2	1	4
SPR_00045	tRNA links to Rfam database...	0.79	0.77	0.81	17	2829	4	0	4	0	5
SPR_00064	tRNA links to Rfam database...	0.54	0.57	0.52	12	2827	11	2	9	0	9
SPR_00065	tRNA links to Rfam database...	0.50	0.52	0.48	11	2827	12	4	8	0	10
SPR_00066	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00068	tRNA links to Rfam database...	0.55	0.52	0.58	11	2831	8	3	5	0	10
SPR_00070	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00074	tRNA links to Rfam database...	0.55	0.55	0.55	11	2830	10	2	7	1	9
SPR_00079	tRNA links to Rfam database...	1.00	1.00	1.00	19	2466	1	0	0	1	0
SPR_00086	tRNA links to Rfam database...	0.30	0.29	0.32	6	2831	13	2	11	0	15
SPR_00087	tRNA links to Rfam database...	0.45	0.45	0.45	9	2830	11	3	8	0	11
SPR_00088	tRNA links to Rfam database...	0.45	0.45	0.45	9	2830	11	3	8	0	11
SPR_00089	tRNA links to Rfam database...	0.45	0.45	0.45	9	2830	11	3	8	0	11
SPR_00090	tRNA links to Rfam database...	0.45	0.45	0.45	9	2830	11	3	8	0	11
SPR_00091	tRNA links to Rfam database...	0.45	0.45	0.45	9	2830	11	3	8	0	11
SPR_00095	tRNA links to Rfam database...	0.54	0.57	0.52	12	2827	11	4	7	0	9
SPR_00111	tRNA links to Rfam database...	0.55	0.57	0.55	12	2679	10	1	9	0	9
SPR_00112	tRNA links to Rfam database...	0.78	0.76	0.80	16	2681	5	3	1	1	5
SPR_00115	tRNA links to Rfam database...	0.85	0.81	0.89	17	2682	2	0	2	0	4
SPR_00117	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	2	0	0	2	0
SPR_00139	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	1	0	0	1	0
SPR_00153	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00155	tRNA links to Rfam database...	0.49	0.52	0.46	11	2902	13	3	10	0	10
SPR_00156	tRNA links to Rfam database...	0.49	0.52	0.46	11	2902	13	4	9	0	10
SPR_00176	tRNA links to Rfam database...	0.51	0.55	0.48	11	2827	13	2	10	1	9
SPR_00177	tRNA links to Rfam database...	0.51	0.57	0.46	12	2824	14	2	12	0	9
SPR_00178	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00191	tRNA links to Rfam database...	0.18	0.19	0.19	4	2829	17	4	13	0	17
SPR_00200	tRNA links to Rfam database...	0.46	0.43	0.50	9	2832	10	3	6	1	12
SPR_00224	tRNA links to Rfam database...	0.50	0.50	0.50	10	3721	15	5	5	5	10
SPR_00271	tRNA links to Rfam database...	0.53	0.57	0.50	12	2826	12	3	9	0	9
SPR_00273	tRNA links to Rfam database...	0.30	0.33	0.28	7	2825	18	2	16	0	14
SPR_00276	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00277	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00294	tRNA links to Rfam database...	0.55	0.57	0.55	12	2828	10	3	7	0	9
SPR_00295	tRNA links to Rfam database...	0.95	0.95	0.95	20	2754	2	0	1	1	1
SPR_00314	tRNA links to Rfam database...	0.71	0.76	0.67	16	2902	11	0	8	3	5
SPR_00315	tRNA links to Rfam database...	0.74	0.81	0.68	17	2901	10	0	8	2	4
SPR_00317	tRNA links to Rfam database...	0.53	0.60	0.48	12	2901	13	7	6	0	8
SPR_00318	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	2	0	0	2	0
SPR_00321	tRNA links to Rfam database...	1.00	1.00	1.00	21	2982	0	0	0	0	0
SPR_00333	tRNA links to Rfam database...	0.46	0.48	0.45	10	2753	12	4	8	0	11
SPR_00352	tRNA links to Rfam database...	0.74	0.76	0.73	16	2904	6	3	3	0	5
SPR_00353	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00357	tRNA links to Rfam database...	0.73	0.76	0.70	16	2903	7	0	7	0	5
SPR_00358	tRNA links to Rfam database...	0.31	0.35	0.29	7	2902	17	5	12	0	13
SPR_00370	tRNA links to Rfam database...	0.24	0.24	0.25	5	2755	15	3	12	0	16
SPR_00386	tRNA links to Rfam database...	0.33	0.35	0.32	7	4164	20	6	9	5	13
SPR_00414	tRNA links to Rfam database...	0.55	0.52	0.58	11	3551	12	3	5	4	10
SPR_00415	tRNA links to Rfam database...	0.50	0.52	0.48	11	3547	13	2	10	1	10
SPR_00417	tRNA links to Rfam database...	0.29	0.32	0.28	7	3545	22	7	11	4	15
SPR_00418	tRNA links to Rfam database...	0.29	0.32	0.28	7	3545	22	7	11	4	15
SPR_00434	tRNA links to Rfam database...	0.27	0.29	0.27	6	2828	16	7	9	0	15
SPR_00435	tRNA links to Rfam database...	0.73	0.71	0.75	15	2830	5	0	5	0	6
SPR_00436	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	2	0	0	2	0
SPR_00437	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	2	0	0	2	0
SPR_00438	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	0	0	0	0	0
SPR_00452	tRNA links to Rfam database...	0.73	0.76	0.70	16	2827	7	3	4	0	5
SPR_00455	tRNA links to Rfam database...	0.28	0.29	0.29	6	2829	15	5	10	0	15
SPR_00456	tRNA links to Rfam database...	0.55	0.57	0.55	12	2828	11	2	8	1	9
SPR_00476	tRNA links to Rfam database...	0.42	0.48	0.38	10	2749	16	3	13	0	11
SPR_00479	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00482	tRNA links to Rfam database...	0.70	0.71	0.68	15	2679	7	0	7	0	6
SPR_00483	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00487	tRNA links to Rfam database...	0.60	0.55	0.67	12	2683	6	0	6	0	10
SPR_00493	tRNA links to Rfam database...	0.95	0.95	0.95	21	2753	1	0	1	0	1
SPR_00496	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	0	0	0	0	0
SPR_00497	tRNA links to Rfam database...	0.42	0.48	0.38	10	2749	16	3	13	0	11
SPR_00502	tRNA links to Rfam database...	0.56	0.57	0.55	12	2904	10	2	8	0	9
SPR_00504	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	0	0	0	0	0
SPR_00505	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00506	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00509	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00512	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00513	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00518	tRNA links to Rfam database...	0.55	0.55	0.55	11	2906	9	1	8	0	9
SPR_00548	tRNA links to Rfam database...	0.54	0.57	0.52	12	3380	11	0	11	0	9
SPR_00557	tRNA links to Rfam database...	0.40	0.43	0.39	9	2827	14	1	13	0	12
SPR_00561	tRNA links to Rfam database...	0.40	0.43	0.39	9	2827	14	1	13	0	12
SPR_00590	tRNA links to Rfam database...	0.33	0.35	0.32	7	2981	15	3	12	0	13
SPR_00593	tRNA links to Rfam database...	0.51	0.53	0.50	10	2755	10	4	6	0	9
SPR_00595	tRNA links to Rfam database...	0.55	0.57	0.55	12	2753	10	2	8	0	9
SPR_00598	tRNA links to Rfam database...	0.56	0.57	0.55	12	2981	10	2	8	0	9
SPR_00610	tRNA links to Rfam database...	0.31	0.33	0.29	7	2532	17	6	11	0	14
SPR_00620	tRNA links to Rfam database...	0.52	0.57	0.48	12	2978	14	5	8	1	9
SPR_00721	tRNA links to Rfam database...	0.50	0.52	0.48	11	2903	12	3	9	0	10
SPR_00722	tRNA links to Rfam database...	0.76	0.80	0.73	16	2904	6	4	2	0	4
SPR_00758	tRNA links to Rfam database...	0.29	0.33	0.27	7	2977	19	7	12	0	14
SPR_00760	tRNA links to Rfam database...	0.60	0.67	0.54	14	3544	12	5	7	0	7
SPR_00777	tRNA links to Rfam database...	0.51	0.55	0.48	11	2605	12	5	7	0	9
SPR_00867	tRNA links to Rfam database...	0.49	0.52	0.46	11	2902	15	4	9	2	10
SPR_00868	tRNA links to Rfam database...	0.58	0.57	0.60	12	2906	9	0	8	1	9
SPR_00943	tRNA links to Rfam database...	0.83	0.85	0.81	17	2535	4	1	3	0	3
SPR_00957	tRNA links to Rfam database...	0.78	0.76	0.80	16	2983	5	0	4	1	5
SPR_01040	tRNA links to Rfam database...	0.83	0.81	0.85	17	2755	4	0	3	1	4
SPR_01088	tRNA links to Rfam database...	0.52	0.52	0.52	11	2905	12	2	8	2	10
SPR_01095	tRNA links to Rfam database...	0.76	0.76	0.76	16	2829	6	0	5	1	5
SPR_01106	tRNA links to Rfam database...	0.52	0.52	0.52	11	2535	10	2	8	0	10
SPR_01117	tRNA links to Rfam database...	1.00	1.00	1.00	21	2982	1	0	0	1	0
SPR_01157	tRNA links to Rfam database...	0.54	0.57	0.52	12	2752	12	0	11	1	9
SRP_00006	Metazoa_SRP links to Rfam database...	0.93	0.88	0.98	89	45662	9	0	2	7	12
SRP_00008	Bacteria_small_SRP links to Rfam database...	0.70	0.72	0.69	18	2900	9	0	8	1	7
SRP_00011	Plant_SRP links to Rfam database...	0.43	0.41	0.45	43	46265	52	4	48	0	61
SRP_00015	Plant_SRP links to Rfam database...	0.54	0.53	0.55	52	46266	47	8	34	5	47
SRP_00020	Bacteria_small_SRP links to Rfam database...	0.86	0.88	0.85	29	5531	5	1	4	0	4
SRP_00024	Bacteria_large_SRP links to Rfam database...	0.76	0.77	0.75	67	37586	22	7	15	0	20
SRP_00026	Bacteria_large_SRP links to Rfam database...	0.69	0.69	0.69	61	36768	33	2	25	6	27
SRP_00027	Bacteria_large_SRP links to Rfam database...	0.70	0.67	0.73	58	37049	21	3	18	0	29
SRP_00030	Bacteria_large_SRP links to Rfam database...	0.77	0.77	0.76	68	36767	23	4	17	2	20
SRP_00031	Bacteria_large_SRP links to Rfam database...	0.70	0.69	0.71	61	36229	29	2	23	4	28
SRP_00037	Bacteria_large_SRP links to Rfam database...	0.62	0.60	0.65	52	36505	30	5	23	2	35
SRP_00038	Bacteria_small_SRP links to Rfam database...	0.94	0.94	0.94	31	5017	2	0	2	0	2
SRP_00042	Bacteria_small_SRP links to Rfam database...	0.45	0.48	0.43	12	3977	18	2	14	2	13
SRP_00044	Bacteria_small_SRP links to Rfam database...	0.77	0.75	0.80	24	6075	9	1	5	3	8
SRP_00046	Bacteria_small_SRP links to Rfam database...	0.97	0.97	0.97	31	4721	2	0	1	1	1
SRP_00050	Metazoa_SRP links to Rfam database...	0.96	0.93	1.00	92	44758	2	0	0	2	7
SRP_00051	Bacteria_small_SRP links to Rfam database...	0.97	0.97	0.97	29	5430	3	0	1	2	1
SRP_00054	Bacteria_small_SRP links to Rfam database...	0.45	0.44	0.47	14	5535	16	0	16	0	18
SRP_00057	Bacteria_small_SRP links to Rfam database...	0.69	0.69	0.71	24	6294	11	2	8	1	11
SRP_00058	Bacteria_small_SRP links to Rfam database...	0.90	0.91	0.89	31	5743	8	1	3	4	3
SRP_00066	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	45359	92	10	82	0	100
SRP_00072	Bacteria_small_SRP links to Rfam database...	1.00	1.00	1.00	29	6299	1	0	0	1	0
SRP_00074	Bacteria_small_SRP links to Rfam database...	0.39	0.41	0.36	12	6522	25	3	18	4	17
SRP_00075	Bacteria_small_SRP links to Rfam database...	0.82	0.79	0.84	27	5533	8	0	5	3	7
SRP_00077	Bacteria_small_SRP links to Rfam database...	0.20	0.22	0.20	8	6629	33	3	30	0	29
SRP_00081	Bacteria_small_SRP links to Rfam database...	0.69	0.74	0.64	23	5529	13	1	12	0	8
SRP_00084	Bacteria_small_SRP links to Rfam database...	0.85	0.85	0.85	29	5426	5	1	4	0	5
SRP_00086	Metazoa_SRP links to Rfam database...	0.68	0.66	0.69	66	44158	30	3	26	1	34
SRP_00088	Bacteria_large_SRP links to Rfam database...	0.68	0.69	0.67	61	34100	30	3	27	0	28
SRP_00089	Bacteria_large_SRP links to Rfam database...	0.83	0.81	0.86	73	35693	12	1	11	0	17
SRP_00090	Bacteria_large_SRP links to Rfam database...	0.32	0.31	0.33	28	35427	56	3	53	0	62
SRP_00094	Bacteria_small_SRP links to Rfam database...	0.86	0.88	0.84	21	4070	4	0	4	0	3
SRP_00095	Bacteria_small_SRP links to Rfam database...	0.85	0.88	0.81	22	3978	5	1	4	0	3
SRP_00098	Bacteria_small_SRP links to Rfam database...	0.75	0.73	0.77	27	6406	9	1	7	1	10
SRP_00102	Metazoa_SRP links to Rfam database...	0.92	0.88	0.97	89	44459	4	0	3	1	12
SRP_00103	Metazoa_SRP links to Rfam database...	0.88	0.86	0.91	88	45354	11	1	8	2	14
SRP_00105	Bacteria_small_SRP links to Rfam database...	0.38	0.38	0.39	13	5532	20	3	17	0	21
SRP_00107	Bacteria_small_SRP links to Rfam database...	0.13	0.16	0.11	3	3628	26	6	18	2	16
SRP_00121	Bacteria_small_SRP links to Rfam database...	0.80	0.80	0.80	20	4253	6	0	5	1	5
SRP_00128	Bacteria_small_SRP links to Rfam database...	0.76	0.81	0.73	29	6746	11	1	10	0	7
SRP_00132	Bacteria_small_SRP links to Rfam database...	0.65	0.69	0.63	20	4819	15	0	12	3	9
SRP_00134	Bacteria_large_SRP links to Rfam database...	0.51	0.55	0.48	16	5962	23	3	14	6	13
SRP_00141	Bacteria_small_SRP links to Rfam database...	0.91	0.90	0.93	37	6288	3	1	2	0	4
SRP_00152	Plant_SRP links to Rfam database...	0.65	0.63	0.67	65	45656	35	1	31	3	38
SRP_00161	Bacteria_small_SRP links to Rfam database...	0.86	0.86	0.86	19	2828	3	0	3	0	3
SRP_00162	Bacteria_small_SRP links to Rfam database...	0.89	0.91	0.88	21	2902	4	0	3	1	2
SRP_00163	Bacteria_small_SRP links to Rfam database...	0.76	0.81	0.72	21	3457	8	2	6	0	5
SRP_00164	Bacteria_small_SRP links to Rfam database...	0.83	0.83	0.83	29	6868	6	1	5	0	6
SRP_00170	Bacteria_small_SRP links to Rfam database...	0.55	0.56	0.54	14	4069	13	0	12	1	11
SRP_00171	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	45355	96	16	80	0	88
SRP_00173	Bacteria_large_SRP links to Rfam database...	0.73	0.71	0.75	64	38141	27	1	20	6	26
SRP_00174	Bacteria_large_SRP links to Rfam database...	0.74	0.74	0.73	64	38693	28	7	17	4	22
SRP_00178	Plant_SRP links to Rfam database...	0.81	0.75	0.87	76	45666	13	1	10	2	26
SRP_00179	Plant_SRP links to Rfam database...	0.88	0.83	0.95	87	45964	9	1	4	4	18
SRP_00181	Plant_SRP links to Rfam database...	0.31	0.29	0.34	30	45967	59	2	57	0	72
SRP_00182	Plant_SRP links to Rfam database...	0.70	0.68	0.73	69	45961	27	5	21	1	32
SRP_00184	Plant_SRP links to Rfam database...	0.58	0.54	0.64	54	45971	35	4	27	4	46
SRP_00188	Plant_SRP links to Rfam database...	0.15	0.15	0.16	12	31049	64	6	58	0	67
SRP_00194	Bacteria_small_SRP links to Rfam database...	0.77	0.81	0.74	17	3217	6	0	6	0	4
SRP_00200	Bacteria_small_SRP links to Rfam database...	0.80	0.81	0.81	29	6867	7	1	6	0	7
SRP_00209	Bacteria_small_SRP links to Rfam database...	0.80	0.81	0.79	22	4628	6	0	6	0	5
SRP_00213	Bacteria_small_SRP links to Rfam database...	0.37	0.40	0.36	10	4158	18	3	15	0	15
SRP_00215	Bacteria_small_SRP links to Rfam database...	0.82	0.80	0.83	20	3216	4	0	4	0	5
SRP_00227	Bacteria_small_SRP links to Rfam database...	0.95	0.97	0.94	30	5119	2	1	1	0	1
SRP_00228	Metazoa_SRP links to Rfam database...	0.94	0.91	0.98	86	45363	10	0	2	8	9
SRP_00231	Bacteria_small_SRP links to Rfam database...	0.87	0.88	0.86	30	5425	5	1	4	0	4
SRP_00233	Bacteria_small_SRP links to Rfam database...	0.97	0.94	1.00	31	5120	0	0	0	0	2
SRP_00234	Bacteria_large_SRP links to Rfam database...	0.76	0.74	0.77	64	36232	25	1	18	6	22
SRP_00243	Bacteria_small_SRP links to Rfam database...	0.97	0.94	1.00	29	5122	1	0	0	1	2
SRP_00244	Bacteria_small_SRP links to Rfam database...	0.89	0.85	0.94	33	6868	3	1	1	1	6
SRP_00250	Bacteria_small_SRP links to Rfam database...	0.75	0.75	0.75	27	6750	11	1	8	2	9
SRP_00251	Bacteria_small_SRP links to Rfam database...	0.71	0.72	0.70	26	6984	11	1	10	0	10
SRP_00266	Bacteria_small_SRP links to Rfam database...	0.72	0.72	0.72	21	4627	9	1	7	1	8
SRP_00268	Bacteria_small_SRP links to Rfam database...	0.88	0.85	0.92	23	4161	2	1	1	0	4
SRP_00269	Bacteria_small_SRP links to Rfam database...	0.59	0.61	0.57	20	5015	15	3	12	0	13
SRP_00270	Bacteria_small_SRP links to Rfam database...	0.43	0.45	0.41	14	4622	20	2	18	0	17
SRP_00271	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	3215	25	3	22	0	24
SRP_00273	Bacteria_small_SRP links to Rfam database...	0.79	0.80	0.78	32	6745	10	1	8	1	8
SRP_00274	Bacteria_small_SRP links to Rfam database...	0.83	0.84	0.82	32	6864	7	1	6	0	6
SRP_00295	Bacteria_small_SRP links to Rfam database...	0.90	0.87	0.94	33	6868	3	1	1	1	5
SRP_00303	Bacteria_small_SRP links to Rfam database...	0.69	0.72	0.66	23	6635	12	1	11	0	9
SRP_00308	Bacteria_large_SRP links to Rfam database...	0.69	0.67	0.71	59	36232	28	4	20	4	29
SRP_00310	Bacteria_small_SRP links to Rfam database...	0.87	0.87	0.87	20	2903	4	0	3	1	3
SRP_00312	Bacteria_small_SRP links to Rfam database...	0.32	0.33	0.31	9	4157	20	3	17	0	18
SRP_00315	Bacteria_small_SRP links to Rfam database...	0.87	0.87	0.87	20	2903	3	0	3	0	3
SRP_00317	Metazoa_SRP links to Rfam database...	0.78	0.73	0.83	72	45063	22	0	15	7	26
SRP_00318	Bacteria_small_SRP links to Rfam database...	0.82	0.78	0.86	18	2982	3	0	3	0	5
SRP_00325	Bacteria_small_SRP links to Rfam database...	0.97	0.94	1.00	31	4340	0	0	0	0	2
SRP_00326	Bacteria_small_SRP links to Rfam database...	0.55	0.55	0.55	17	5019	14	3	11	0	14
SRP_00333	Bacteria_small_SRP links to Rfam database...	0.86	0.85	0.88	29	5118	4	0	4	0	5
SRP_00335	Bacteria_large_SRP links to Rfam database...	0.32	0.44	0.24	17	35173	76	26	29	21	22
SRP_00337	Bacteria_large_SRP links to Rfam database...	0.66	0.63	0.69	57	35428	28	2	24	2	34
SRP_00338	Bacteria_small_SRP links to Rfam database...	0.97	0.97	0.97	35	5424	1	0	1	0	1
SRP_00341	Bacteria_small_SRP links to Rfam database...	0.74	0.74	0.74	23	4722	8	0	8	0	8
SRP_00342	Bacteria_small_SRP links to Rfam database...	0.55	0.56	0.54	14	3979	17	1	11	5	11
SRP_00347	Metazoa_SRP links to Rfam database...	0.83	0.82	0.84	79	46571	20	5	10	5	17
SRP_00350	Bacteria_small_SRP links to Rfam database...	0.34	0.33	0.35	9	3890	17	2	15	0	18
SRP_00356	Bacteria_small_SRP links to Rfam database...	0.45	0.43	0.48	13	5023	14	4	10	0	17
SRP_00357	Bacteria_small_SRP links to Rfam database...	0.93	0.92	0.94	33	5321	2	1	1	0	3
SRP_00358	Bacteria_small_SRP links to Rfam database...	0.93	0.91	0.94	32	6294	2	1	1	0	3
SRP_00367	Bacteria_small_SRP links to Rfam database...	0.96	0.97	0.94	34	6750	2	1	1	0	1
SRP_00368	Metazoa_SRP links to Rfam database...	0.94	0.91	0.98	89	43865	7	0	2	5	9
SRP_00369	Bacteria_small_SRP links to Rfam database...	0.93	0.91	0.94	32	5744	2	1	1	0	3
SRP_00383	Bacteria_small_SRP links to Rfam database...	0.12	0.13	0.13	3	3217	20	3	17	0	21
TMR_00017	tmRNA links to Rfam database...	0.38	0.38	0.39	39	67060	68	15	47	6	63
TMR_00018	tmRNA links to Rfam database...	0.25	0.26	0.24	24	64521	81	11	64	6	68
TMR_00038	tmRNA links to Rfam database...	0.25	0.25	0.25	28	71142	87	12	71	4	82
TMR_00042	tmRNA links to Rfam database...	0.29	0.30	0.29	29	62736	73	8	62	3	69
TMR_00046	tmRNA links to Rfam database...	0.56	0.56	0.57	54	62740	47	7	34	6	42
TMR_00048	tmRNA links to Rfam database...	0.33	0.35	0.31	33	64874	78	9	64	5	62
TMR_00080	tmRNA links to Rfam database...	0.61	0.61	0.61	59	70403	41	10	28	3	37
TMR_00082	tmRNA links to Rfam database...	0.59	0.58	0.60	56	67802	43	12	26	5	40
TMR_00123	tmRNA links to Rfam database...	0.17	0.17	0.17	17	66327	92	11	75	6	84
TMR_00137	tmRNA links to Rfam database...	0.16	0.17	0.16	15	60979	89	14	67	8	74
TMR_00142	tmRNA links to Rfam database...	0.57	0.61	0.54	62	70761	53	21	32	0	40
TMR_00207	tmRNA links to Rfam database...	0.25	0.24	0.26	25	72292	80	6	67	7	78
TMR_00257	tmRNA links to Rfam database...	0.20	0.19	0.20	19	67068	78	8	66	4	79
TMR_00271	tmRNA links to Rfam database...	0.47	0.46	0.48	42	64173	54	7	39	8	49
TMR_00332	tmRNA links to Rfam database...	0.28	0.27	0.29	27	67067	71	14	53	4	72
TMR_00366	tmRNA links to Rfam database...	0.31	0.30	0.31	30	67800	79	10	56	13	70
TMR_00378	tmRNA links to Rfam database...	0.29	0.30	0.28	29	67792	86	7	68	11	68
TMR_00399	tmRNA links to Rfam database...	0.29	0.31	0.28	29	64875	80	23	53	4	65
TMR_00404	tmRNA links to Rfam database...	0.21	0.23	0.20	21	67425	94	23	59	12	71
TMR_00427	tmRNA links to Rfam database...	0.33	0.33	0.33	32	67430	69	11	55	3	65
TMR_00443	tmRNA links to Rfam database...	0.37	0.38	0.36	39	67053	71	13	56	2	65
TMR_00451	tmRNA links to Rfam database...	0.22	0.24	0.21	21	63448	83	14	63	6	68
TMR_00458	tmRNA links to Rfam database...	0.15	0.15	0.15	14	63450	89	19	63	7	79
TMR_00469	tmRNA links to Rfam database...	0.40	0.41	0.39	41	64514	65	11	54	0	59
TMR_00472	tmRNA links to Rfam database...	0.33	0.33	0.33	32	64523	77	10	55	12	65
TMR_00519	tmRNA links to Rfam database...	0.19	0.20	0.18	19	63084	97	18	69	10	76
TMR_00520	tmRNA links to Rfam database...	0.46	0.46	0.46	46	63090	64	12	42	10	53
TMR_00522	tmRNA links to Rfam database...	0.36	0.36	0.36	35	63094	70	11	50	9	62
TMR_00528	tmRNA links to Rfam database...	0.30	0.31	0.29	30	63086	84	20	54	10	67
TMR_00540	tmRNA links to Rfam database...	0.42	0.41	0.43	43	73435	66	10	48	8	61
TMR_00568	tmRNA links to Rfam database...	0.35	0.34	0.37	34	60633	65	9	50	6	65
TMR_00571	tmRNA links to Rfam database...	0.32	0.32	0.32	32	60626	75	12	56	7	67
TMR_00580	tmRNA links to Rfam database...	0.26	0.26	0.25	26	60624	77	19	57	1	74
TMR_00584	tmRNA links to Rfam database...	0.52	0.51	0.53	49	60982	55	7	37	11	48
TMR_00586	tmRNA links to Rfam database...	0.23	0.25	0.22	24	60965	87	18	68	1	73
TMR_00616	tmRNA links to Rfam database...	0.35	0.34	0.35	34	67064	68	14	49	5	65
TMR_00699	tmRNA links to Rfam database...	0.39	0.37	0.40	38	67066	61	7	50	4	64
TMR_00702	tmRNA links to Rfam database...	0.19	0.19	0.20	19	67065	80	17	60	3	81
TMR_00703	tmRNA links to Rfam database...	0.36	0.36	0.37	36	67430	67	12	50	5	63

^top

Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.

Table of contents:

Overview

Performance plots

Performance of Carnac(20) - scored higher in this pairwise comparison

1. Total counts & total scores for Carnac(20)

2. Individual counts for Carnac(20) [ download as .csv ]

Performance of UNAFold - scored lower in this pairwise comparison

1. Total counts & total scores for UNAFold

2. Individual counts for UNAFold [ download as .csv ]