CompaRNA - on-line benchmarks of RNA structure prediction methods

Laboratory of Structural Bioinformatics @ Adam Mickiewicz University in Poznan

Home

Methods

Datasets

Rankings

RNA 2D Atlas

Help

FAQ

Contact us

RSS feeds

Twitter

Overview

Metric	CentroidAlifold(seed)		Contrafold
MCC	0.749	>	0.584
Average MCC ± 95% Confidence Intervals	0.735 ± 0.012	>	0.622 ± 0.016
Sensitivity	0.623	>	0.565
Positive Predictive Value	0.901	>	0.604
Total TP	48490	>	43962
Total TN	104886038	>	104867100
Total FP	7916	<	34818
Total FP CONTRA	840	<	4116
Total FP INCONS	4468	<	24658
Total FP COMP	2608	<	6044
Total FN	29312	<	33840
P-value	3.56938820447e-08

^top

Performance plots

Comparison of performance of CentroidAlifold(seed) and Contrafold. Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data (individual counts for CentroidAlifold(seed) and Contrafold).
Average Matthews Correlation Coefficients (MCC) with 95% confidence intervals (CIs) were plotted for different RNA families, for which at least 3 members were present in the benchmarking dataset. 'n' denotes the number of MCCs used to calculate the average and CI. See tables below for raw data (individual counts for CentroidAlifold(seed) and Contrafold).
Comparison of average Matthews Correlation Coefficients (MCCs) for CentroidAlifold(seed) and Contrafold. The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data (individual counts for CentroidAlifold(seed) and Contrafold).

^top

Performance of CentroidAlifold(seed) - scored higher in this pairwise comparison

1. Total counts & total scores for CentroidAlifold(seed)

Total Base Pair Counts
Total TP	48490
Total TN	104886038
Total FP	7916
Total FP CONTRA	840
Total FP INCONS	4468
Total FP COMP	2608
Total FN	29312

Total Scores
MCC	0.749
Average MCC ± 95% Confidence Intervals	0.735 ± 0.012
Sensitivity	0.623
Positive Predictive Value	0.901
Nr of predictions	706

^top

2. Individual counts for CentroidAlifold(seed) [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00001	RNaseP_arch links to Rfam database...	0.81	0.65	1.00	49	34142	0	0	0	0	26
ASE_00002	RNaseP_arch links to Rfam database...	0.82	0.67	1.00	49	35462	0	0	0	0	24
ASE_00004	RNaseP_bact_a links to Rfam database...	0.61	0.45	0.83	44	47842	9	0	9	0	53
ASE_00005	RNaseP_bact_a links to Rfam database...	0.75	0.57	0.97	67	57901	2	0	2	0	50
ASE_00006	RNaseP_bact_a links to Rfam database...	0.58	0.44	0.76	41	47532	13	0	13	0	52
ASE_00007	RNaseP_bact_a links to Rfam database...	0.83	0.71	0.98	78	59605	2	0	2	0	32
ASE_00009	RNaseP_arch links to Rfam database...	0.79	0.67	0.94	45	26058	3	0	3	0	22
ASE_00010	RNaseP_bact_b links to Rfam database...	0.86	0.74	0.98	61	49708	12	0	1	11	21
ASE_00012	RNaseP_bact_a links to Rfam database...	0.75	0.59	0.95	73	73843	7	1	3	3	50
ASE_00014	RNaseP_arch links to Rfam database...	0.74	0.58	0.95	61	54221	3	0	3	0	45
ASE_00017	RNaseP_nuc links to Rfam database...	0.79	0.69	0.90	44	50991	5	1	4	0	20
ASE_00018	RNaseP_bact_a links to Rfam database...	0.78	0.60	1.00	81	80520	0	0	0	0	53
ASE_00020	RNaseP_bact_a links to Rfam database...	0.63	0.43	0.93	54	73862	4	3	1	0	72
ASE_00021	RNaseP_bact_a links to Rfam database...	0.63	0.44	0.90	71	104117	11	2	6	3	89
ASE_00022	RNaseP_bact_b links to Rfam database...	0.80	0.65	1.00	80	82948	5	0	0	5	44
ASE_00023	RNaseP_bact_a links to Rfam database...	0.47	0.35	0.63	45	84184	28	8	18	2	82
ASE_00025	RNaseP_nuc links to Rfam database...	0.69	0.58	0.84	41	78557	8	1	7	0	30
ASE_00026	RNaseP_bact_a links to Rfam database...	0.80	0.67	0.96	74	59608	4	0	3	1	36
ASE_00028	RNaseP_bact_b links to Rfam database...	0.80	0.64	1.00	81	84585	3	0	0	3	45
ASE_00029	RNaseP_bact_a links to Rfam database...	0.45	0.34	0.61	41	82961	30	4	22	4	81
ASE_00030	RNaseP_bact_a links to Rfam database...	0.66	0.49	0.90	71	85412	8	0	8	0	74
ASE_00031	RNaseP_bact_a links to Rfam database...	0.51	0.37	0.72	46	86672	18	0	18	0	80
ASE_00032	RNaseP_bact_a links to Rfam database...	0.38	0.27	0.54	32	80141	30	1	26	3	86
ASE_00033	RNaseP_bact_a links to Rfam database...	0.80	0.65	0.99	79	64900	3	1	0	2	42
ASE_00035	RNaseP_bact_a links to Rfam database...	0.77	0.64	0.94	75	70420	8	0	5	3	43
ASE_00036	RNaseP_bact_a links to Rfam database...	0.75	0.58	0.99	76	75778	1	1	0	0	56
ASE_00037	RNaseP_bact_a links to Rfam database...	0.84	0.71	1.00	78	59262	1	0	0	1	32
ASE_00038	RNaseP_bact_a links to Rfam database...	0.74	0.54	1.00	55	53573	0	0	0	0	46
ASE_00040	RNaseP_bact_a links to Rfam database...	0.77	0.59	1.00	79	78924	2	0	0	2	54
ASE_00041	RNaseP_bact_a links to Rfam database...	0.77	0.64	0.92	69	57555	6	0	6	0	39
ASE_00042	RNaseP_bact_a links to Rfam database...	0.65	0.49	0.87	71	90018	11	0	11	0	74
ASE_00044	RNaseP_bact_a links to Rfam database...	0.83	0.70	1.00	73	54542	0	0	0	0	32
ASE_00045	RNaseP_bact_b links to Rfam database...	0.85	0.76	0.94	61	47213	9	0	4	5	19
ASE_00046	RNaseP_bact_a links to Rfam database...	0.73	0.62	0.86	64	50329	10	0	10	0	39
ASE_00047	RNaseP_bact_a links to Rfam database...	0.70	0.52	0.93	68	74232	5	0	5	0	62
ASE_00052	RNaseP_bact_a links to Rfam database...	0.75	0.63	0.91	70	61348	8	0	7	1	42
ASE_00053	RNaseP_bact_a links to Rfam database...	0.71	0.54	0.92	72	79323	6	3	3	0	61
ASE_00057	RNaseP_bact_a links to Rfam database...	0.73	0.57	0.93	77	82132	6	2	4	0	57
ASE_00064	RNaseP_bact_a links to Rfam database...	0.77	0.60	1.00	53	45398	0	0	0	0	36
ASE_00066	RNaseP_bact_a links to Rfam database...	0.75	0.56	1.00	73	72317	1	0	0	1	57
ASE_00068	RNaseP_bact_a links to Rfam database...	0.54	0.38	0.78	32	37634	9	0	9	0	53
ASE_00069	RNaseP_bact_a links to Rfam database...	0.75	0.57	0.98	80	82946	3	0	2	1	60
ASE_00074	RNaseP_bact_a links to Rfam database...	0.83	0.69	1.00	82	67814	1	0	0	1	37
ASE_00075	RNaseP_bact_a links to Rfam database...	0.64	0.44	0.92	71	108734	11	1	5	5	91
ASE_00076	RNaseP_bact_a links to Rfam database...	0.69	0.48	1.00	57	68208	0	0	0	0	61
ASE_00077	RNaseP_bact_a links to Rfam database...	0.79	0.64	0.96	55	45093	2	1	1	0	31
ASE_00078	RNaseP_bact_a links to Rfam database...	0.83	0.69	1.00	57	43014	0	0	0	0	26
ASE_00079	RNaseP_bact_a links to Rfam database...	0.63	0.47	0.84	47	55555	9	0	9	0	53
ASE_00080	RNaseP_bact_a links to Rfam database...	0.45	0.30	0.66	37	71575	19	1	18	0	86
ASE_00081	RNaseP_bact_a links to Rfam database...	0.77	0.59	1.00	57	49713	0	0	0	0	40
ASE_00082	RNaseP_bact_a links to Rfam database...	0.66	0.43	1.00	50	70450	6	0	0	6	66
ASE_00083	RNaseP_bact_a links to Rfam database...	0.72	0.52	1.00	57	62424	0	0	0	0	53
ASE_00084	RNaseP_bact_a links to Rfam database...	0.75	0.57	0.98	56	53571	1	1	0	0	43
ASE_00087	RNaseP_bact_a links to Rfam database...	0.60	0.38	0.95	54	88353	3	0	3	0	90
ASE_00090	RNaseP_bact_a links to Rfam database...	0.75	0.56	1.00	57	55554	0	0	0	0	44
ASE_00092	RNaseP_bact_a links to Rfam database...	0.70	0.50	0.98	56	63489	1	1	0	0	57
ASE_00096	RNaseP_bact_a links to Rfam database...	0.63	0.44	0.89	51	63489	6	0	6	0	64
ASE_00099	RNaseP_bact_a links to Rfam database...	0.82	0.67	1.00	80	64540	0	0	0	0	40
ASE_00100	RNaseP_nuc links to Rfam database...	0.72	0.58	0.90	44	82166	5	1	4	0	32
ASE_00102	RNaseP_bact_a links to Rfam database...	0.57	0.40	0.81	66	117774	15	1	14	0	100
ASE_00104	RNaseP_bact_a links to Rfam database...	0.81	0.67	0.99	80	64180	1	0	1	0	39
ASE_00105	RNaseP_bact_a links to Rfam database...	0.55	0.40	0.76	44	64203	14	4	10	0	67
ASE_00107	RNaseP_bact_a links to Rfam database...	0.78	0.63	0.96	80	73070	3	0	3	0	47
ASE_00108	RNaseP_nuc links to Rfam database...	0.79	0.70	0.90	44	46922	5	1	4	0	19
ASE_00111	RNaseP_nuc links to Rfam database...	0.83	0.74	0.93	42	50041	3	1	2	0	15
ASE_00112	RNaseP_bact_a links to Rfam database...	0.50	0.34	0.71	40	75410	16	0	16	0	76
ASE_00114	RNaseP_bact_b links to Rfam database...	0.69	0.62	0.76	48	45388	20	0	15	5	29
ASE_00115	RNaseP_bact_a links to Rfam database...	0.74	0.54	1.00	55	54560	0	0	0	0	46
ASE_00116	RNaseP_arch links to Rfam database...	0.86	0.76	0.98	50	31575	1	0	1	0	16
ASE_00118	RNaseP_bact_a links to Rfam database...	0.68	0.49	0.94	50	60673	4	1	2	1	52
ASE_00119	RNaseP_bact_a links to Rfam database...	0.66	0.44	0.98	48	62786	1	1	0	0	60
ASE_00120	RNaseP_arch links to Rfam database...	0.79	0.64	0.98	60	46910	2	0	1	1	34
ASE_00121	RNaseP_arch links to Rfam database...	0.81	0.66	0.98	61	45088	1	0	1	0	31
ASE_00122	RNaseP_bact_a links to Rfam database...	0.80	0.64	1.00	56	43309	1	0	0	1	32
ASE_00123	RNaseP_bact_a links to Rfam database...	0.68	0.48	0.95	41	38460	2	0	2	0	44
ASE_00125	RNaseP_bact_a links to Rfam database...	0.67	0.47	0.95	41	39297	2	0	2	0	47
ASE_00128	RNaseP_bact_a links to Rfam database...	0.73	0.54	1.00	54	53247	0	0	0	0	46
ASE_00129	RNaseP_bact_a links to Rfam database...	0.71	0.50	1.00	56	62779	0	0	0	0	55
ASE_00131	RNaseP_bact_a links to Rfam database...	0.65	0.44	0.97	37	39302	1	1	0	0	48
ASE_00132	RNaseP_bact_a links to Rfam database...	0.76	0.59	0.98	56	50346	1	1	0	0	39
ASE_00134	RNaseP_bact_a links to Rfam database...	0.69	0.54	0.89	51	50346	6	0	6	0	44
ASE_00135	RNaseP_bact_a links to Rfam database...	0.53	0.39	0.74	42	63133	15	0	15	0	67
ASE_00136	RNaseP_bact_a links to Rfam database...	0.75	0.59	0.95	54	48148	3	0	3	0	38
ASE_00137	RNaseP_bact_a links to Rfam database...	0.70	0.53	0.93	52	48460	4	0	4	0	46
ASE_00138	RNaseP_bact_a links to Rfam database...	0.79	0.63	1.00	51	40419	0	0	0	0	30
ASE_00139	RNaseP_bact_a links to Rfam database...	0.73	0.54	1.00	56	54229	0	0	0	0	48
ASE_00140	RNaseP_bact_a links to Rfam database...	0.64	0.43	0.95	54	70819	3	3	0	0	71
ASE_00142	RNaseP_bact_a links to Rfam database...	0.77	0.61	0.97	75	67084	4	0	2	2	47
ASE_00145	RNaseP_arch links to Rfam database...	0.77	0.59	1.00	66	70059	0	0	0	0	45
ASE_00146	RNaseP_bact_a links to Rfam database...	0.78	0.62	0.97	77	70797	2	0	2	0	47
ASE_00148	RNaseP_arch links to Rfam database...	0.62	0.41	0.95	63	112509	3	0	3	0	91
ASE_00151	RNaseP_bact_a links to Rfam database...	0.80	0.70	0.92	69	51928	6	5	1	0	29
ASE_00153	RNaseP_nuc links to Rfam database...	0.67	0.53	0.85	39	57584	7	1	6	0	34
ASE_00154	RNaseP_arch links to Rfam database...	0.75	0.59	0.95	63	65275	3	0	3	0	44
ASE_00155	RNaseP_arch links to Rfam database...	0.68	0.46	1.00	66	93462	0	0	0	0	76
ASE_00161	RNaseP_bact_b links to Rfam database...	0.86	0.78	0.94	68	53556	8	0	4	4	19
ASE_00163	RNaseP_bact_a links to Rfam database...	0.77	0.59	1.00	55	53246	0	0	0	0	38
ASE_00165	RNaseP_bact_a links to Rfam database...	0.69	0.50	0.94	51	52921	4	1	2	1	50
ASE_00168	RNaseP_nuc links to Rfam database...	0.79	0.69	0.90	44	60677	5	1	4	0	20
ASE_00169	RNaseP_bact_a links to Rfam database...	0.65	0.48	0.88	51	57233	7	1	6	0	56
ASE_00170	RNaseP_bact_a links to Rfam database...	0.78	0.60	1.00	56	48772	0	0	0	0	37
ASE_00171	RNaseP_bact_a links to Rfam database...	0.76	0.59	1.00	55	48461	1	0	0	1	39
ASE_00172	RNaseP_bact_a links to Rfam database...	0.72	0.53	0.98	56	58939	1	1	0	0	50
ASE_00174	RNaseP_bact_a links to Rfam database...	0.60	0.43	0.82	47	61018	10	1	9	0	62
ASE_00175	RNaseP_bact_a links to Rfam database...	0.71	0.51	0.98	55	59975	1	1	0	0	52
ASE_00176	RNaseP_bact_a links to Rfam database...	0.71	0.50	1.00	55	59976	0	0	0	0	55
ASE_00179	RNaseP_bact_a links to Rfam database...	0.79	0.63	0.98	53	44199	2	0	1	1	31
ASE_00180	RNaseP_bact_a links to Rfam database...	0.73	0.54	0.98	54	51305	1	1	0	0	46
ASE_00181	RNaseP_bact_a links to Rfam database...	0.71	0.52	0.96	55	57573	3	2	0	1	51
ASE_00182	RNaseP_bact_a links to Rfam database...	0.61	0.40	0.95	54	84198	3	0	3	0	82
ASE_00184	RNaseP_bact_a links to Rfam database...	0.75	0.56	1.00	57	54558	0	0	0	0	45
ASE_00185	RNaseP_bact_a links to Rfam database...	0.64	0.41	0.98	53	73482	1	1	0	0	75
ASE_00186	RNaseP_bact_a links to Rfam database...	0.66	0.51	0.86	67	78925	14	0	11	3	65
ASE_00187	RNaseP_arch links to Rfam database...	0.69	0.51	0.92	59	68571	5	1	4	0	56
ASE_00189	RNaseP_bact_b links to Rfam database...	0.76	0.62	0.94	63	63123	8	0	4	4	39
ASE_00190	RNaseP_bact_b links to Rfam database...	0.74	0.54	1.00	49	45402	3	0	0	3	41
ASE_00191	RNaseP_arch links to Rfam database...	0.90	0.82	0.98	50	29595	1	0	1	0	11
ASE_00192	RNaseP_bact_b links to Rfam database...	0.51	0.35	0.75	47	84603	20	0	16	4	86
ASE_00194	RNaseP_bact_b links to Rfam database...	0.72	0.53	0.97	63	73471	7	0	2	5	56
ASE_00196	RNaseP_arch links to Rfam database...	0.82	0.69	0.96	52	31572	2	0	2	0	23
ASE_00197	RNaseP_bact_a links to Rfam database...	0.63	0.46	0.86	67	89175	12	0	11	1	78
ASE_00203	RNaseP_bact_a links to Rfam database...	0.72	0.55	0.93	53	46608	4	2	2	0	43
ASE_00204	RNaseP_bact_b links to Rfam database...	0.73	0.55	0.97	62	67832	7	1	1	5	50
ASE_00205	RNaseP_arch links to Rfam database...	0.82	0.67	1.00	60	45996	1	0	0	1	30
ASE_00209	RNaseP_arch links to Rfam database...	0.83	0.69	0.98	61	43009	1	0	1	0	27
ASE_00210	RNaseP_arch links to Rfam database...	0.74	0.65	0.86	42	27212	9	0	7	2	23
ASE_00212	RNaseP_bact_a links to Rfam database...	0.63	0.45	0.89	66	93887	9	0	8	1	82
ASE_00213	RNaseP_arch links to Rfam database...	0.83	0.71	0.98	47	27213	3	0	1	2	19
ASE_00214	RNaseP_bact_a links to Rfam database...	0.73	0.54	0.98	56	56223	2	1	0	1	47
ASE_00215	RNaseP_bact_a links to Rfam database...	0.51	0.32	0.82	32	48477	7	0	7	0	67
ASE_00216	RNaseP_bact_a links to Rfam database...	0.81	0.66	1.00	54	39286	0	0	0	0	28
ASE_00217	RNaseP_bact_a links to Rfam database...	0.82	0.67	1.00	60	40410	1	0	0	1	30
ASE_00221	RNaseP_bact_a links to Rfam database...	0.83	0.70	0.99	82	64537	1	0	1	0	35
ASE_00222	RNaseP_arch links to Rfam database...	0.65	0.42	1.00	66	112035	0	0	0	0	91
ASE_00227	RNaseP_bact_a links to Rfam database...	0.57	0.43	0.76	57	78928	18	0	18	0	76
ASE_00228	RNaseP_bact_a links to Rfam database...	0.72	0.57	0.91	49	46917	6	3	2	1	37
ASE_00229	RNaseP_bact_a links to Rfam database...	0.78	0.61	1.00	53	42433	2	0	0	2	34
ASE_00231	RNaseP_bact_a links to Rfam database...	0.59	0.45	0.78	43	47840	12	0	12	0	53
ASE_00232	RNaseP_bact_a links to Rfam database...	0.81	0.65	1.00	55	38448	0	0	0	0	29
ASE_00234	RNaseP_bact_a links to Rfam database...	0.64	0.43	0.95	55	75408	3	3	0	0	74
ASE_00237	RNaseP_nuc links to Rfam database...	0.83	0.73	0.93	41	45709	3	1	2	0	15
ASE_00238	RNaseP_bact_a links to Rfam database...	0.61	0.44	0.86	50	64203	8	2	6	0	64
ASE_00240	RNaseP_bact_a links to Rfam database...	0.62	0.48	0.79	45	46608	12	0	12	0	48
ASE_00241	RNaseP_bact_a links to Rfam database...	0.79	0.64	0.98	56	43899	1	0	1	0	31
ASE_00242	RNaseP_bact_a links to Rfam database...	0.85	0.72	1.00	81	60994	1	0	0	1	31
ASE_00245	RNaseP_nuc links to Rfam database...	0.54	0.38	0.75	30	55238	12	0	10	2	48
ASE_00246	RNaseP_nuc links to Rfam database...	0.79	0.67	0.92	45	48156	4	1	3	0	22
ASE_00247	RNaseP_nuc links to Rfam database...	0.79	0.69	0.90	44	54236	5	1	4	0	20
ASE_00248	RNaseP_bact_a links to Rfam database...	0.84	0.71	1.00	81	62400	1	0	0	1	33
ASE_00250	RNaseP_bact_a links to Rfam database...	0.72	0.56	0.91	74	78922	8	1	6	1	57
ASE_00251	RNaseP_nuc links to Rfam database...	0.68	0.51	0.92	22	17742	13	0	2	11	21
ASE_00252	RNaseP_bact_a links to Rfam database...	0.63	0.43	0.92	72	115362	10	2	4	4	96
ASE_00254	RNaseP_bact_a links to Rfam database...	0.81	0.66	1.00	54	36802	0	0	0	0	28
ASE_00255	RNaseP_bact_a links to Rfam database...	0.64	0.51	0.80	66	74609	16	0	16	0	64
ASE_00257	RNaseP_bact_a links to Rfam database...	0.68	0.52	0.91	50	50985	5	1	4	0	47
ASE_00258	RNaseP_nuc links to Rfam database...	0.79	0.63	1.00	34	26762	2	0	0	2	20
ASE_00263	RNaseP_bact_a links to Rfam database...	0.68	0.47	0.98	56	70443	1	1	0	0	64
ASE_00264	RNaseP_nuc links to Rfam database...	0.58	0.40	0.85	40	49094	8	0	7	1	60
ASE_00267	RNaseP_bact_a links to Rfam database...	0.80	0.64	1.00	56	45094	0	0	0	0	32
ASE_00270	RNaseP_bact_a links to Rfam database...	0.55	0.34	0.90	43	72342	6	0	5	1	85
ASE_00274	RNaseP_bact_a links to Rfam database...	0.71	0.53	0.95	55	55553	3	3	0	0	48
ASE_00277	RNaseP_bact_a links to Rfam database...	0.73	0.57	0.93	52	48149	4	3	1	0	39
ASE_00279	RNaseP_bact_a links to Rfam database...	0.73	0.54	0.98	55	53245	1	0	1	0	46
ASE_00280	RNaseP_bact_a links to Rfam database...	0.74	0.57	0.97	56	51945	2	1	1	0	42
ASE_00281	RNaseP_bact_a links to Rfam database...	0.78	0.63	0.98	55	44495	1	0	1	0	33
ASE_00282	RNaseP_bact_a links to Rfam database...	0.66	0.45	0.98	57	77757	1	1	0	0	70
ASE_00283	RNaseP_bact_a links to Rfam database...	0.72	0.52	0.98	56	61719	1	0	1	0	51
ASE_00284	RNaseP_bact_a links to Rfam database...	0.72	0.53	0.98	57	58253	1	1	0	0	51
ASE_00285	RNaseP_bact_a links to Rfam database...	0.68	0.47	1.00	57	68949	0	0	0	0	65
ASE_00286	RNaseP_bact_a links to Rfam database...	0.78	0.61	1.00	56	46609	0	0	0	0	36
ASE_00287	RNaseP_bact_a links to Rfam database...	0.67	0.50	0.89	51	54889	6	0	6	0	52
ASE_00288	RNaseP_bact_a links to Rfam database...	0.75	0.58	0.96	54	46000	2	2	0	0	39
ASE_00289	RNaseP_bact_a links to Rfam database...	0.66	0.46	0.95	73	100948	4	0	4	0	84
ASE_00292	RNaseP_bact_a links to Rfam database...	0.76	0.58	1.00	80	81730	1	0	0	1	58
ASE_00294	RNaseP_bact_a links to Rfam database...	0.68	0.47	0.98	81	114398	2	0	2	0	90
ASE_00295	RNaseP_bact_a links to Rfam database...	0.77	0.59	1.00	77	73843	0	0	0	0	54
ASE_00296	RNaseP_bact_a links to Rfam database...	0.73	0.54	0.98	79	91725	3	0	2	1	66
ASE_00297	RNaseP_bact_a links to Rfam database...	0.61	0.45	0.83	44	52922	9	2	7	0	54
ASE_00298	RNaseP_bact_a links to Rfam database...	0.70	0.50	0.98	56	67471	1	1	0	0	57
ASE_00299	RNaseP_bact_a links to Rfam database...	0.55	0.44	0.70	44	49392	19	0	19	0	56
ASE_00303	RNaseP_nuc links to Rfam database...	0.40	0.26	0.60	25	67854	22	0	17	5	70
ASE_00305	RNaseP_bact_b links to Rfam database...	0.87	0.79	0.96	67	54545	8	0	3	5	18
ASE_00313	RNaseP_nuc links to Rfam database...	0.50	0.34	0.75	30	62441	14	2	8	4	59
ASE_00316	RNaseP_nuc links to Rfam database...	0.46	0.27	0.79	26	107847	8	0	7	1	72
ASE_00318	RNaseP_bact_b links to Rfam database...	0.79	0.62	1.00	73	80127	6	0	0	6	45
ASE_00321	RNaseP_bact_b links to Rfam database...	0.89	0.80	1.00	70	54545	5	0	0	5	18
ASE_00327	RNaseP_nuc links to Rfam database...	0.61	0.43	0.86	38	57247	11	0	6	5	51
ASE_00328	RNaseP_bact_b links to Rfam database...	0.83	0.70	1.00	78	72693	5	0	0	5	34
ASE_00329	RNaseP_nuc links to Rfam database...	0.59	0.41	0.84	26	40724	17	0	5	12	37
ASE_00330	RNaseP_nuc links to Rfam database...	0.66	0.48	0.91	43	56233	5	0	4	1	47
ASE_00332	RNaseP_bact_a links to Rfam database...	0.78	0.60	1.00	83	81727	0	0	0	0	55
ASE_00335	RNaseP_bact_b links to Rfam database...	0.81	0.66	1.00	77	75389	7	0	0	7	39
ASE_00337	RNaseP_nuc links to Rfam database...	0.57	0.44	0.76	31	39299	18	0	10	8	40
ASE_00338	RNaseP_nuc links to Rfam database...	0.51	0.33	0.80	32	66390	8	0	8	0	66
ASE_00339	RNaseP_bact_a links to Rfam database...	0.58	0.46	0.72	55	80124	22	7	14	1	64
ASE_00340	RNaseP_bact_a links to Rfam database...	0.73	0.56	0.94	48	46005	7	0	3	4	37
ASE_00342	RNaseP_bact_a links to Rfam database...	0.84	0.71	1.00	82	62399	0	0	0	0	33
ASE_00343	RNaseP_bact_a links to Rfam database...	0.37	0.27	0.51	31	83375	32	2	28	2	82
ASE_00346	RNaseP_arch links to Rfam database...	0.61	0.49	0.75	48	48141	16	0	16	0	49
ASE_00353	RNaseP_bact_a links to Rfam database...	0.72	0.52	0.98	56	57913	2	1	0	1	51
ASE_00359	RNaseP_arch links to Rfam database...	0.77	0.61	0.98	49	42728	2	0	1	1	31
ASE_00360	RNaseP_arch links to Rfam database...	0.87	0.77	0.98	50	29352	1	0	1	0	15
ASE_00361	RNaseP_bact_a links to Rfam database...	0.65	0.43	0.98	55	75410	1	1	0	0	72
ASE_00362	RNaseP_bact_a links to Rfam database...	0.78	0.62	1.00	56	48149	1	0	0	1	35
ASE_00363	RNaseP_bact_a links to Rfam database...	0.70	0.54	0.89	51	51303	6	0	6	0	43
ASE_00364	RNaseP_bact_a links to Rfam database...	0.66	0.49	0.89	51	54228	6	1	5	0	54
ASE_00366	RNaseP_bact_a links to Rfam database...	0.69	0.53	0.90	52	58595	6	2	4	0	46
ASE_00367	RNaseP_bact_a links to Rfam database...	0.81	0.65	1.00	56	43015	1	0	0	1	30
ASE_00369	RNaseP_bact_a links to Rfam database...	0.73	0.53	1.00	57	55888	0	0	0	0	50
ASE_00370	RNaseP_bact_a links to Rfam database...	0.78	0.62	0.98	52	41852	1	0	1	0	32
ASE_00372	RNaseP_bact_a links to Rfam database...	0.73	0.54	0.98	54	51948	1	0	1	0	46
ASE_00374	RNaseP_bact_a links to Rfam database...	0.78	0.60	1.00	53	44797	0	0	0	0	35
ASE_00375	RNaseP_bact_a links to Rfam database...	0.71	0.51	1.00	56	60322	1	0	0	1	54
ASE_00376	RNaseP_bact_a links to Rfam database...	0.68	0.50	0.93	53	56896	4	0	4	0	52
ASE_00377	RNaseP_bact_a links to Rfam database...	0.67	0.50	0.91	53	57572	5	1	4	0	54
ASE_00379	RNaseP_bact_a links to Rfam database...	0.79	0.63	1.00	56	46000	1	0	0	1	33
ASE_00380	RNaseP_bact_a links to Rfam database...	0.75	0.57	1.00	56	54890	0	0	0	0	43
ASE_00382	RNaseP_bact_a links to Rfam database...	0.80	0.64	1.00	54	41851	1	0	0	1	30
ASE_00383	RNaseP_bact_a links to Rfam database...	0.74	0.54	1.00	57	54558	0	0	0	0	48
ASE_00384	RNaseP_bact_a links to Rfam database...	0.78	0.61	1.00	56	48460	0	0	0	0	36
ASE_00385	RNaseP_bact_a links to Rfam database...	0.71	0.56	0.90	45	41855	5	0	5	0	36
ASE_00386	RNaseP_bact_a links to Rfam database...	0.77	0.59	1.00	57	50346	0	0	0	0	39
ASE_00387	RNaseP_bact_a links to Rfam database...	0.63	0.46	0.87	48	55890	7	0	7	0	56
ASE_00388	RNaseP_bact_a links to Rfam database...	0.77	0.60	1.00	53	45700	1	0	0	1	36
ASE_00390	RNaseP_bact_a links to Rfam database...	0.78	0.62	0.98	53	42141	1	0	1	0	32
ASE_00393	RNaseP_bact_a links to Rfam database...	0.71	0.56	0.91	52	47838	5	0	5	0	41
ASE_00394	RNaseP_bact_a links to Rfam database...	0.76	0.58	1.00	54	46917	0	0	0	0	39
ASE_00395	RNaseP_bact_a links to Rfam database...	0.80	0.64	1.00	54	41562	0	0	0	0	30
ASE_00396	RNaseP_bact_a links to Rfam database...	0.81	0.65	1.00	54	41562	0	0	0	0	29
ASE_00397	RNaseP_bact_a links to Rfam database...	0.74	0.54	1.00	57	54558	0	0	0	0	48
ASE_00398	RNaseP_bact_a links to Rfam database...	0.72	0.52	1.00	54	55891	0	0	0	0	50
ASE_00400	RNaseP_bact_a links to Rfam database...	0.72	0.52	1.00	55	57915	1	0	0	1	51
ASE_00401	RNaseP_bact_a links to Rfam database...	0.62	0.40	0.96	50	76976	2	1	1	0	76
ASE_00402	RNaseP_bact_a links to Rfam database...	0.80	0.65	1.00	55	42431	0	0	0	0	30
ASE_00403	RNaseP_bact_a links to Rfam database...	0.73	0.53	1.00	57	55888	0	0	0	0	50
ASE_00404	RNaseP_bact_a links to Rfam database...	0.80	0.65	1.00	55	43016	1	0	0	1	30
ASE_00406	RNaseP_bact_a links to Rfam database...	0.78	0.61	1.00	57	48771	0	0	0	0	37
ASE_00411	RNaseP_bact_a links to Rfam database...	0.67	0.55	0.82	49	49395	11	5	6	0	40
ASE_00412	RNaseP_bact_a links to Rfam database...	0.63	0.47	0.84	49	58253	9	2	7	0	56
ASE_00413	RNaseP_bact_a links to Rfam database...	0.72	0.57	0.90	46	44500	7	2	3	2	35
ASE_00414	RNaseP_bact_a links to Rfam database...	0.58	0.44	0.76	42	46305	13	3	10	0	53
ASE_00415	RNaseP_bact_a links to Rfam database...	0.57	0.40	0.80	41	54895	10	0	10	0	62
ASE_00416	RNaseP_bact_a links to Rfam database...	0.76	0.61	0.94	78	77338	5	1	4	0	49
ASE_00417	RNaseP_arch links to Rfam database...	0.80	0.65	0.98	65	54549	1	0	1	0	35
ASE_00418	RNaseP_arch links to Rfam database...	0.81	0.67	0.98	50	38730	1	0	1	0	25
ASE_00419	RNaseP_bact_a links to Rfam database...	0.67	0.50	0.89	51	54889	6	2	4	0	52
ASE_00420	RNaseP_nuc links to Rfam database...	0.80	0.63	1.00	40	43325	0	0	0	0	23
ASE_00422	RNaseP_bact_a links to Rfam database...	0.74	0.57	0.96	54	46915	3	0	2	1	40
ASE_00423	RNaseP_bact_a links to Rfam database...	0.77	0.64	0.93	70	56878	6	0	5	1	39
ASE_00426	RNaseP_bact_a links to Rfam database...	0.52	0.41	0.68	44	61010	22	5	16	1	64
ASE_00427	RNaseP_nuc links to Rfam database...	0.86	0.74	1.00	34	40721	0	0	0	0	12
ASE_00428	RNaseP_bact_a links to Rfam database...	0.77	0.62	0.94	78	76553	5	1	4	0	47
ASE_00430	RNaseP_bact_a links to Rfam database...	0.73	0.55	0.98	53	46917	1	0	1	0	44
ASE_00431	RNaseP_bact_a links to Rfam database...	0.56	0.44	0.71	42	46301	17	7	10	0	53
ASE_00434	RNaseP_bact_b links to Rfam database...	0.74	0.61	0.89	67	68190	14	0	8	6	43
ASE_00437	RNaseP_bact_a links to Rfam database...	0.52	0.40	0.67	54	79320	27	0	27	0	81
ASE_00438	RNaseP_bact_a links to Rfam database...	0.62	0.42	0.92	49	66013	4	1	3	0	67
ASE_00441	RNaseP_bact_a links to Rfam database...	0.65	0.44	0.96	49	64210	3	0	2	1	63
ASE_00443	RNaseP_nuc links to Rfam database...	0.63	0.46	0.85	23	26769	18	2	2	14	27
ASE_00447	RNaseP_bact_a links to Rfam database...	0.84	0.71	1.00	82	60296	0	0	0	0	34
ASE_00448	RNaseP_bact_a links to Rfam database...	0.81	0.69	0.95	77	64180	4	0	4	0	35
ASE_00451	RNaseP_bact_a links to Rfam database...	0.79	0.64	0.96	80	70793	3	0	3	0	45
ASE_00454	RNaseP_nuc links to Rfam database...	0.65	0.49	0.86	31	43329	5	0	5	0	32
CRW_00013	Intron_gpI links to Rfam database...	0.37	0.21	0.65	24	103703	17	1	12	4	91
CRW_00016	Intron_gpI links to Rfam database...	0.36	0.20	0.65	24	77384	16	1	12	3	96
CRW_00024	SSU_rRNA_archaea links to Rfam database...	0.90	0.86	0.95	393	1085187	55	6	15	34	65
CRW_00034	SSU_rRNA_bacteria links to Rfam database...	0.83	0.78	0.90	368	1141906	52	10	32	10	106
CRW_00048	SSU_rRNA_bacteria links to Rfam database...	0.87	0.82	0.93	385	1170801	38	9	20	9	85
CRW_00054	SSU_rRNA_bacteria links to Rfam database...	0.87	0.82	0.93	374	1107413	39	9	20	10	82
CRW_00059	SSU_rRNA_bacteria links to Rfam database...	0.85	0.79	0.92	372	1172342	41	9	23	9	101
CRW_00061	SSU_rRNA_bacteria links to Rfam database...	0.86	0.80	0.92	381	1181541	41	9	22	10	95
CRW_00068	SSU_rRNA_bacteria links to Rfam database...	0.87	0.82	0.93	375	1108900	39	9	21	9	82
CRW_00096	SSU_rRNA_bacteria links to Rfam database...	0.87	0.80	0.93	373	1178481	41	4	22	15	92
CRW_00140	SSU_rRNA_bacteria links to Rfam database...	0.87	0.82	0.92	379	1135867	41	9	23	9	84
CRW_00141	SSU_rRNA_bacteria links to Rfam database...	0.86	0.80	0.93	381	1201614	41	9	21	11	95
CRW_00150	SSU_rRNA_bacteria links to Rfam database...	0.86	0.80	0.93	372	1152519	39	9	21	9	94
CRW_00152	SSU_rRNA_bacteria links to Rfam database...	0.86	0.80	0.93	376	1180010	40	9	21	10	95
CRW_00166	SSU_rRNA_bacteria links to Rfam database...	0.86	0.80	0.94	374	1190796	41	4	22	15	94
CRW_00173	SSU_rRNA_bacteria links to Rfam database...	0.82	0.76	0.88	340	1082268	59	9	39	11	105
CRW_00177	SSU_rRNA_bacteria links to Rfam database...	0.84	0.78	0.91	368	1178477	47	9	26	12	105
CRW_00196	SSU_rRNA_bacteria links to Rfam database...	0.87	0.81	0.93	383	1207823	39	9	20	10	92
CRW_00230	SSU_rRNA_bacteria links to Rfam database...	0.86	0.80	0.93	381	1198515	40	9	21	10	97
CRW_00245	SSU_rRNA_bacteria links to Rfam database...	0.87	0.82	0.93	372	1105927	39	9	20	10	81
CRW_00248	SSU_rRNA_bacteria links to Rfam database...	0.85	0.78	0.92	379	1218731	41	9	22	10	105
CRW_00250	SSU_rRNA_bacteria links to Rfam database...	0.86	0.80	0.92	382	1198513	40	9	22	9	96
CRW_00256	SSU_rRNA_bacteria links to Rfam database...	0.86	0.80	0.93	374	1192336	40	9	21	10	94
CRW_00270	SSU_rRNA_bacteria links to Rfam database...	0.87	0.82	0.93	373	1111883	39	9	21	9	82
CRW_00271	SSU_rRNA_bacteria links to Rfam database...	0.84	0.77	0.90	358	1122354	48	8	31	9	104
CRW_00273	SSU_rRNA_bacteria links to Rfam database...	0.86	0.81	0.92	361	1085207	41	8	25	8	85
CRW_00275	SSU_rRNA_bacteria links to Rfam database...	0.87	0.81	0.92	371	1114869	40	9	22	9	86
CRW_00277	SSU_rRNA_bacteria links to Rfam database...	0.85	0.80	0.90	363	1110392	50	13	27	10	90
CRW_00278	SSU_rRNA_bacteria links to Rfam database...	0.83	0.77	0.90	347	1129872	48	8	29	11	103
CRW_00279	SSU_rRNA_bacteria links to Rfam database...	0.86	0.80	0.92	371	1180013	46	9	23	14	93
CRW_00280	SSU_rRNA_bacteria links to Rfam database...	0.84	0.79	0.90	357	1117863	52	9	31	12	96
CRW_00281	SSU_rRNA_bacteria links to Rfam database...	0.86	0.79	0.92	368	1144943	39	9	21	9	96
CRW_00283	SSU_rRNA_bacteria links to Rfam database...	0.79	0.73	0.84	316	1015651	66	12	46	8	116
CRW_00284	SSU_rRNA_bacteria links to Rfam database...	0.84	0.79	0.90	360	1131361	50	9	30	11	96
CRW_00285	SSU_rRNA_bacteria links to Rfam database...	0.85	0.79	0.91	361	1117862	46	11	26	9	97
CRW_00289	SSU_rRNA_bacteria links to Rfam database...	0.83	0.77	0.90	367	1189245	50	10	31	9	109
CRW_00292	SSU_rRNA_bacteria links to Rfam database...	0.76	0.70	0.82	322	1123856	83	13	59	11	139
CRW_00306	SSU_rRNA_eukarya links to Rfam database...	0.53	0.37	0.77	170	1445629	73	4	47	22	292
CRW_00366	SSU_rRNA_eukarya links to Rfam database...	0.53	0.37	0.77	177	1579523	74	4	49	21	305
CRW_00371	SSU_rRNA_eukarya links to Rfam database...	0.54	0.37	0.78	185	1611673	73	4	48	21	311
CRW_00379	SSU_rRNA_eukarya links to Rfam database...	0.45	0.30	0.69	158	2126723	93	6	66	21	376
CRW_00411	SSU_rRNA_eukarya links to Rfam database...	0.53	0.37	0.76	182	1615264	78	4	53	21	314
CRW_00414	SSU_rRNA_eukarya links to Rfam database...	0.52	0.36	0.74	177	1665987	83	5	56	22	318
CRW_00466	SSU_rRNA_bacteria links to Rfam database...	0.87	0.82	0.93	374	1116361	39	8	22	9	84
CRW_00589	SSU_rRNA_bacteria links to Rfam database...	0.87	0.81	0.93	360	1094074	43	2	24	17	85
CRW_00590	SSU_rRNA_bacteria links to Rfam database...	0.87	0.81	0.93	364	1119366	44	2	24	18	88
CRW_00591	SSU_rRNA_bacteria links to Rfam database...	0.88	0.82	0.94	365	1098513	44	3	22	19	81
CRW_00610	Intron_gpI links to Rfam database...	0.51	0.33	0.77	27	36280	11	1	7	3	54
CRW_00613	Intron_gpI links to Rfam database...	0.48	0.32	0.71	25	34945	14	0	10	4	53
CRW_00614	Intron_gpI links to Rfam database...	0.43	0.30	0.63	17	121744	16	2	8	6	40
CRW_00618	Intron_gpI links to Rfam database...	0.41	0.28	0.61	17	56252	12	3	8	1	44
CRW_00619	Intron_gpI links to Rfam database...	0.53	0.30	0.92	22	165001	5	0	2	3	51
CRW_00620	Intron_gpI links to Rfam database...	0.44	0.29	0.69	18	150949	18	0	8	10	45
CRW_00621	Intron_gpI links to Rfam database...	0.40	0.27	0.61	19	153150	14	3	9	2	52
CRW_00623	Intron_gpI links to Rfam database...	0.49	0.29	0.83	24	129766	9	1	4	4	59
CRW_00633	Intron_gpI links to Rfam database...	0.31	0.17	0.58	18	63515	14	2	11	1	88
CRW_00634	Intron_gpI links to Rfam database...	0.35	0.20	0.61	19	64589	20	1	11	8	75
CRW_00670	Intron_gpI links to Rfam database...	0.49	0.28	0.89	33	70088	8	0	4	4	87
CRW_00671	Intron_gpI links to Rfam database...	0.50	0.28	0.89	33	62798	8	0	4	4	84
CRW_00672	Intron_gpI links to Rfam database...	0.51	0.30	0.89	33	72353	8	0	4	4	78
CRW_00674	Intron_gpI links to Rfam database...	0.29	0.16	0.54	20	83399	20	6	11	3	104
CRW_00676	Intron_gpI links to Rfam database...	0.35	0.17	0.69	20	93499	20	0	9	11	95
CRW_00692	Intron_gpI links to Rfam database...	0.39	0.22	0.69	20	68606	20	0	9	11	70
CRW_00759	SSU_rRNA_eukarya links to Rfam database...	0.50	0.35	0.72	168	1636913	92	3	61	28	313
CRW_00763	SSU_rRNA_bacteria links to Rfam database...	0.85	0.77	0.93	344	1215650	51	2	24	25	102
CRW_00772	SSU_rRNA_bacteria links to Rfam database...	0.80	0.74	0.87	297	945660	69	2	41	26	107
CRW_00778	SSU_rRNA_bacteria links to Rfam database...	0.84	0.79	0.90	303	1201687	92	4	31	57	81
CRW_00789	SSU_rRNA_bacteria links to Rfam database...	0.85	0.79	0.92	353	1137401	53	5	27	21	94
CRW_00795	SSU_rRNA_bacteria links to Rfam database...	0.81	0.74	0.88	291	1152590	94	3	37	54	103
CRW_00800	SSU_rRNA_eukarya links to Rfam database...	0.45	0.30	0.67	141	1401765	92	7	62	23	329
CRW_00849	SSU_rRNA_bacteria links to Rfam database...	0.82	0.76	0.89	358	1117856	57	12	34	11	112
CRW_00997	SSU_rRNA_bacteria links to Rfam database...	0.87	0.81	0.93	377	1135871	39	9	21	9	87
CRW_01153	SSU_rRNA_eukarya links to Rfam database...	0.48	0.33	0.70	167	1606289	89	4	68	17	336
CRW_01171	SSU_rRNA_eukarya links to Rfam database...	0.52	0.35	0.77	179	1593773	71	4	49	18	327
CRW_01343	SSU_rRNA_archaea links to Rfam database...	0.86	0.81	0.92	351	977520	61	3	27	31	83
PDB_00005	Tymo_tRNA-like links to Rfam database...	0.80	0.64	1.00	9	937	0	0	0	0	5
PDB_00012	mir-TAR links to Rfam database...	1.00	1.00	1.00	7	399	2	0	0	2	0
PDB_00213	Gammaretro_CES links to Rfam database...	0.85	0.73	1.00	30	5020	0	0	0	0	11
PDB_00553	mir-TAR links to Rfam database...	0.95	0.91	1.00	10	455	0	0	0	0	1
PDB_00703	SSU_rRNA_bacteria links to Rfam database...	0.81	0.72	0.92	356	1073456	57	6	27	24	139
PDB_00716	HDV_ribozyme links to Rfam database...	0.75	0.61	0.93	14	2686	1	0	1	0	9
PDB_00741	Entero_5_CRE links to Rfam database...	0.72	0.53	1.00	9	694	0	0	0	0	8
PDB_00810	s2m links to Rfam database...	0.87	0.76	1.00	13	1068	1	0	0	1	4
PDB_00827	Intron_gpI links to Rfam database...	0.58	0.40	0.84	32	26990	6	1	5	0	49
PDB_00828	Purine links to Rfam database...	0.88	0.78	1.00	21	2464	0	0	0	0	6
PDB_00829	Purine links to Rfam database...	0.91	0.83	1.00	20	2258	0	0	0	0	4
PDB_00854	SSU_rRNA_bacteria links to Rfam database...	0.78	0.66	0.92	354	1500393	66	5	26	35	181
PDB_00876	HIV_FE links to Rfam database...	0.53	0.50	0.59	10	973	7	0	7	0	10
PDB_00919	RNaseP_bact_a links to Rfam database...	0.49	0.35	0.69	36	44201	18	0	16	2	67
PDB_01001	tRNA links to Rfam database...	0.00	0.00	0.00	0	2139	6	0	6	0	18
PDB_01020	Purine links to Rfam database...	0.91	0.83	1.00	19	2259	1	0	0	1	4
PDB_01050	UnaL2 links to Rfam database...	0.68	0.46	1.00	6	624	2	0	0	2	7
PDB_01051	Telomerase-cil links to Rfam database...	0.96	0.92	1.00	12	891	4	0	0	4	1
PDB_01073	SAM links to Rfam database...	0.84	0.71	1.00	24	4347	1	0	0	1	10
PDB_01088	SSU_rRNA_bacteria links to Rfam database...	0.75	0.63	0.90	344	1471089	68	3	34	31	203
PDB_01092	glmS links to Rfam database...	0.72	0.58	0.91	30	10120	4	0	3	1	22
PDB_01103	SSU_rRNA_bacteria links to Rfam database...	0.78	0.65	0.92	368	1606129	52	6	25	21	194
PDB_01105	SSU_rRNA_bacteria links to Rfam database...	0.79	0.68	0.93	367	1433576	53	2	26	25	173
PDB_01114	TPP links to Rfam database...	0.77	0.59	1.00	16	2834	1	0	0	1	11
PDB_01120	SSU_rRNA_bacteria links to Rfam database...	0.80	0.70	0.92	368	1204728	49	8	24	17	159
PDB_01152	HIV_FS2 links to Rfam database...	0.80	0.64	1.00	9	552	0	0	0	0	5
PDB_01236	ykoK links to Rfam database...	0.88	0.78	1.00	42	11586	3	0	0	3	12
PDB_01273	SSU_rRNA_bacteria links to Rfam database...	0.80	0.71	0.90	348	1117874	63	6	32	25	143
RFA_00389	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	3	0	0	3	1
RFA_00390	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	2	0	0	2	1
RFA_00391	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	3	0	0	3	1
RFA_00396	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	3	0	0	3	1
RFA_00402	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	3	0	0	3	1
RFA_00409	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	3	0	0	3	1
RFA_00416	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1471	2	0	0	2	1
RFA_00425	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1639	3	0	0	3	1
RFA_00427	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1471	3	0	0	3	1
RFA_00433	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	2	0	0	2	1
RFA_00434	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	3	0	0	3	1
RFA_00436	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	3	0	0	3	1
RFA_00440	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1471	3	0	0	3	1
RFA_00442	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	3	0	0	3	1
RFA_00444	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1526	3	0	0	3	1
RFA_00446	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1471	3	0	0	3	1
RFA_00449	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1471	3	0	0	3	1
RFA_00582	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	5980	3	0	0	3	0
RFA_00583	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4935	3	0	0	3	0
RFA_00584	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	2911	3	0	0	3	0
RFA_00585	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4836	3	0	0	3	0
RFA_00586	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	3901	3	0	0	3	0
RFA_00587	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4836	3	0	0	3	0
RFA_00588	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4545	3	0	0	3	0
RFA_00589	Y_RNA links to Rfam database...	0.97	0.93	1.00	14	4357	3	0	0	3	1
RFA_00594	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	2760	3	0	0	3	0
RFA_00596	Y_RNA links to Rfam database...	0.93	0.87	1.00	13	5982	3	0	0	3	2
RFA_00597	Telomerase-vert links to Rfam database...	0.73	0.64	0.83	70	97819	19	0	14	5	39
RFA_00598	Telomerase-vert links to Rfam database...	0.72	0.63	0.81	64	84587	26	0	15	11	37
RFA_00599	Telomerase-vert links to Rfam database...	0.85	0.73	0.99	81	101393	4	0	1	3	30
RFA_00600	Telomerase-vert links to Rfam database...	0.79	0.68	0.92	68	120221	15	0	6	9	32
RFA_00601	Telomerase-vert links to Rfam database...	0.82	0.71	0.95	81	99150	9	0	4	5	33
RFA_00602	Telomerase-vert links to Rfam database...	0.81	0.71	0.93	82	101387	10	0	6	4	34
RFA_00603	Telomerase-cil links to Rfam database...	0.96	0.91	1.00	32	13498	0	0	0	0	3
RFA_00604	Telomerase-cil links to Rfam database...	0.97	0.94	1.00	33	13497	0	0	0	0	2
RFA_00605	Telomerase-cil links to Rfam database...	0.97	0.94	1.00	33	15192	0	0	0	0	2
RFA_00606	Telomerase-cil links to Rfam database...	0.91	0.82	1.00	32	21289	0	0	0	0	7
RFA_00607	Telomerase-cil links to Rfam database...	0.94	0.89	1.00	32	17734	0	0	0	0	4
RFA_00609	Telomerase-cil links to Rfam database...	0.93	0.86	1.00	32	17923	0	0	0	0	5
RFA_00610	Telomerase-cil links to Rfam database...	0.93	0.86	1.00	32	17173	0	0	0	0	5
RFA_00611	Telomerase-cil links to Rfam database...	0.96	0.91	1.00	32	13009	0	0	0	0	3
RFA_00613	Telomerase-cil links to Rfam database...	0.97	0.94	1.00	33	12847	0	0	0	0	2
RFA_00615	Telomerase-cil links to Rfam database...	0.85	0.80	0.90	28	13335	3	0	3	0	7
RFA_00620	Telomerase-cil links to Rfam database...	0.91	0.82	1.00	32	21913	0	0	0	0	7
RFA_00621	RNase_MRP links to Rfam database...	0.41	0.30	0.56	23	46319	19	2	16	1	53
RFA_00623	RNase_MRP links to Rfam database...	0.45	0.29	0.70	23	43923	11	1	9	1	55
RFA_00624	RNase_MRP links to Rfam database...	0.68	0.61	0.77	37	30087	11	0	11	0	24
RFA_00626	rne5 links to Rfam database...	0.98	0.95	1.00	83	56533	8	0	0	8	4
RFA_00627	rne5 links to Rfam database...	0.98	0.97	1.00	84	56869	10	0	0	10	3
RFA_00628	rne5 links to Rfam database...	0.98	0.95	1.00	82	57209	12	0	0	12	4
RFA_00630	rne5 links to Rfam database...	0.93	0.90	0.96	78	56872	16	0	3	13	9
RFA_00632	HDV_ribozyme links to Rfam database...	0.74	0.64	0.86	18	4074	3	2	1	0	10
RFA_00636	HDV_ribozyme links to Rfam database...	0.78	0.68	0.90	19	3984	2	2	0	0	9
RFA_00639	7SK links to Rfam database...	0.67	0.48	0.93	42	54570	3	0	3	0	45
RFA_00642	Vimentin3 links to Rfam database...	0.41	0.17	1.00	3	2923	0	0	0	0	15
RFA_00643	Vimentin3 links to Rfam database...	0.00	0.00	0.00	0	2211	0	0	0	0	18
RFA_00644	Vimentin3 links to Rfam database...	0.00	0.00	0.00	0	2701	0	0	0	0	18
RFA_00645	Vimentin3 links to Rfam database...	0.23	0.06	1.00	1	2414	0	0	0	0	17
RFA_00649	Vimentin3 links to Rfam database...	0.00	0.00	0.00	0	2145	0	0	0	0	18
RFA_00651	Vimentin3 links to Rfam database...	0.00	0.00	0.00	0	2080	0	0	0	0	18
RFA_00653	Vimentin3 links to Rfam database...	0.33	0.11	1.00	2	2143	0	0	0	0	16
RFA_00654	Vimentin3 links to Rfam database...	0.00	0.00	0.00	0	2415	0	0	0	0	18
RFA_00658	Hammerhead_1 links to Rfam database...	0.71	0.57	0.89	8	1119	2	0	1	1	6
RFA_00659	Hammerhead_1 links to Rfam database...	0.65	0.43	1.00	6	1122	0	0	0	0	8
RFA_00664	Hammerhead_1 links to Rfam database...	0.65	0.43	1.00	6	984	0	0	0	0	8
RFA_00667	Hammerhead_1 links to Rfam database...	0.65	0.43	1.00	6	984	0	0	0	0	8
RFA_00668	Hammerhead_1 links to Rfam database...	0.65	0.43	1.00	6	984	0	0	0	0	8
RFA_00672	Hammerhead_1 links to Rfam database...	0.78	0.62	1.00	8	895	0	0	0	0	5
RFA_00673	Hammerhead_1 links to Rfam database...	0.65	0.43	1.00	6	1122	0	0	0	0	8
RFA_00674	Hammerhead_1 links to Rfam database...	0.60	0.43	0.86	6	1121	1	0	1	0	8
RFA_00675	Hammerhead_1 links to Rfam database...	0.65	0.43	1.00	6	984	0	0	0	0	8
RFA_00677	Hammerhead_1 links to Rfam database...	0.65	0.43	1.00	6	984	0	0	0	0	8
RFA_00678	Hammerhead_1 links to Rfam database...	0.65	0.43	1.00	6	940	0	0	0	0	8
RFA_00680	Hammerhead_1 links to Rfam database...	0.65	0.43	1.00	6	1122	0	0	0	0	8
RFA_00684	Hammerhead_1 links to Rfam database...	0.65	0.43	1.00	6	984	0	0	0	0	8
RFA_00685	Hammerhead_1 links to Rfam database...	0.65	0.43	1.00	6	984	0	0	0	0	8
RFA_00695	Hammerhead_1 links to Rfam database...	0.80	0.64	1.00	9	7012	0	0	0	0	5
RFA_00703	Hammerhead_1 links to Rfam database...	0.80	0.64	1.00	9	4269	0	0	0	0	5
RFA_00704	Hammerhead_1 links to Rfam database...	0.65	0.43	1.00	6	984	0	0	0	0	8
RFA_00705	Hammerhead_1 links to Rfam database...	0.76	0.64	0.90	9	1025	2	0	1	1	5
RFA_00706	Hammerhead_1 links to Rfam database...	0.65	0.43	1.00	6	1029	0	0	0	0	8
RFA_00707	Hammerhead_1 links to Rfam database...	0.65	0.43	1.00	6	1029	0	0	0	0	8
RFA_00708	Hammerhead_1 links to Rfam database...	0.71	0.57	0.89	8	1026	2	0	1	1	6
RFA_00709	Hammerhead_1 links to Rfam database...	0.65	0.43	1.00	6	984	0	0	0	0	8
RFA_00710	Hammerhead_1 links to Rfam database...	0.72	0.64	0.82	9	979	3	0	2	1	5
RFA_00711	Hammerhead_1 links to Rfam database...	0.65	0.43	1.00	6	1029	0	0	0	0	8
RFA_00715	Hammerhead_1 links to Rfam database...	0.65	0.43	1.00	6	940	0	0	0	0	8
RFA_00716	Hammerhead_1 links to Rfam database...	0.65	0.43	1.00	6	940	0	0	0	0	8
RFA_00717	Hammerhead_1 links to Rfam database...	0.75	0.57	1.00	8	895	0	0	0	0	6
RFA_00730	s2m links to Rfam database...	1.00	1.00	1.00	12	891	2	0	0	2	0
RFA_00731	s2m links to Rfam database...	1.00	1.00	1.00	12	891	2	0	0	2	0
RFA_00733	s2m links to Rfam database...	1.00	1.00	1.00	12	891	2	0	0	2	0
RFA_00734	s2m links to Rfam database...	1.00	1.00	1.00	12	891	2	0	0	2	0
RFA_00736	s2m links to Rfam database...	1.00	1.00	1.00	12	891	2	0	0	2	0
RFA_00737	s2m links to Rfam database...	1.00	1.00	1.00	12	891	2	0	0	2	0
RFA_00745	s2m links to Rfam database...	1.00	1.00	1.00	12	934	2	0	0	2	0
RFA_00749	s2m links to Rfam database...	1.00	1.00	1.00	12	891	2	0	0	2	0
RFA_00758	s2m links to Rfam database...	1.00	1.00	1.00	12	891	2	0	0	2	0
RFA_00762	s2m links to Rfam database...	1.00	1.00	1.00	12	891	2	0	0	2	0
RFA_00763	s2m links to Rfam database...	1.00	1.00	1.00	12	891	2	0	0	2	0
RFA_00764	s2m links to Rfam database...	1.00	1.00	1.00	12	891	2	0	0	2	0
RFA_00765	s2m links to Rfam database...	1.00	1.00	1.00	12	891	2	0	0	2	0
RFA_00767	Corona_pk3 links to Rfam database...	0.74	0.56	1.00	10	1881	0	0	0	0	8
RFA_00768	Corona_pk3 links to Rfam database...	0.74	0.56	1.00	10	1881	0	0	0	0	8
RFA_00769	Corona_pk3 links to Rfam database...	0.74	0.56	1.00	10	1943	0	0	0	0	8
RFA_00770	Corona_pk3 links to Rfam database...	0.74	0.56	1.00	10	2006	0	0	0	0	8
RFA_00773	Corona_pk3 links to Rfam database...	0.74	0.56	1.00	10	1943	0	0	0	0	8
RFA_00779	Corona_pk3 links to Rfam database...	0.74	0.56	1.00	10	1943	0	0	0	0	8
RFA_00781	Gammaretro_CES links to Rfam database...	0.97	0.94	1.00	30	5020	0	0	0	0	2
RFA_00786	Gammaretro_CES links to Rfam database...	0.97	0.94	1.00	30	5020	0	0	0	0	2
RFA_00791	Gammaretro_CES links to Rfam database...	0.97	0.94	1.00	30	5121	0	0	0	0	2
RFA_00792	Gammaretro_CES links to Rfam database...	0.97	0.94	1.00	30	5020	0	0	0	0	2
RFA_00801	Gammaretro_CES links to Rfam database...	0.97	0.94	1.00	30	5020	0	0	0	0	2
RFA_00805	RNAIII links to Rfam database...	0.64	0.41	1.00	61	133325	1	0	0	1	89
RFA_00808	RydC links to Rfam database...	0.65	0.56	0.75	9	2004	3	1	2	0	7
RFA_00809	RydC links to Rfam database...	0.43	0.38	0.50	6	2133	6	0	6	0	10
RFA_00814	R2_retro_el links to Rfam database...	0.91	0.83	1.00	34	25166	1	0	0	1	7
RFA_00815	R2_retro_el links to Rfam database...	0.94	0.88	1.00	36	24495	1	0	0	1	5
RFA_00816	R2_retro_el links to Rfam database...	0.94	0.88	1.00	36	23184	1	0	0	1	5
RFA_00817	R2_retro_el links to Rfam database...	0.92	0.85	1.00	35	21910	1	0	0	1	6
RFA_00818	R2_retro_el links to Rfam database...	0.94	0.88	1.00	36	20265	1	0	0	1	5
RFA_00819	R2_retro_el links to Rfam database...	0.94	0.88	1.00	36	27930	1	0	0	1	5
RFA_00820	bicoid_3 links to Rfam database...	0.90	0.83	0.99	133	151390	14	0	2	12	27
RFA_00830	bicoid_3 links to Rfam database...	0.76	0.68	0.84	105	152503	32	1	19	12	49
SPR_00020	tRNA links to Rfam database...	0.55	0.30	1.00	6	2695	0	0	0	0	14
SPR_00023	tRNA links to Rfam database...	0.53	0.29	1.00	6	2844	0	0	0	0	15
SPR_00137	tRNA links to Rfam database...	0.49	0.24	1.00	5	2921	1	0	0	1	16
SPR_00273	tRNA links to Rfam database...	0.44	0.24	0.83	5	2844	1	0	1	0	16
SPR_00277	tRNA links to Rfam database...	0.53	0.29	1.00	6	2920	0	0	0	0	15
SPR_00394	tRNA links to Rfam database...	0.53	0.29	1.00	6	3649	0	0	0	0	15
SPR_00402	tRNA links to Rfam database...	0.53	0.29	1.00	6	2550	0	0	0	0	15
SPR_00721	tRNA links to Rfam database...	0.53	0.29	1.00	6	2920	0	0	0	0	15
SPR_00816	tRNA links to Rfam database...	0.55	0.30	1.00	6	3480	0	0	0	0	14
SPR_01157	tRNA links to Rfam database...	0.53	0.29	1.00	6	2769	0	0	0	0	15
SRP_00001	Bacteria_large_SRP links to Rfam database...	0.82	0.68	1.00	27	6759	5	0	0	5	13
SRP_00002	Metazoa_SRP links to Rfam database...	0.91	0.83	0.99	85	45064	6	0	1	5	17
SRP_00006	Metazoa_SRP links to Rfam database...	0.91	0.82	1.00	83	45670	7	0	0	7	18
SRP_00008	Bacteria_small_SRP links to Rfam database...	0.96	0.92	1.00	23	2903	2	0	0	2	2
SRP_00009	Plant_SRP links to Rfam database...	0.85	0.77	0.94	79	46581	13	0	5	8	23
SRP_00011	Plant_SRP links to Rfam database...	0.81	0.74	0.89	77	46273	15	0	10	5	27
SRP_00012	Plant_SRP links to Rfam database...	0.85	0.78	0.93	79	46275	14	0	6	8	22
SRP_00015	Plant_SRP links to Rfam database...	0.82	0.75	0.89	74	46277	19	0	9	10	25
SRP_00016	Archaea_SRP links to Rfam database...	0.89	0.81	0.98	88	47805	6	0	2	4	21
SRP_00018	Fungi_SRP links to Rfam database...	0.70	0.58	0.84	47	38447	14	2	7	5	34
SRP_00019	Fungi_SRP links to Rfam database...	0.69	0.51	0.94	46	35997	8	1	2	5	45
SRP_00020	Bacteria_small_SRP links to Rfam database...	0.89	0.85	0.93	28	5535	2	1	1	0	5
SRP_00024	Bacteria_large_SRP links to Rfam database...	0.56	0.31	1.00	27	37648	4	0	0	4	60
SRP_00026	Bacteria_large_SRP links to Rfam database...	0.55	0.31	1.00	27	36829	4	0	0	4	61
SRP_00027	Bacteria_large_SRP links to Rfam database...	0.57	0.32	1.00	28	37100	4	0	0	4	59
SRP_00030	Bacteria_large_SRP links to Rfam database...	0.55	0.31	1.00	27	36829	4	0	0	4	61
SRP_00031	Bacteria_large_SRP links to Rfam database...	0.54	0.29	1.00	26	36289	5	0	0	5	63
SRP_00037	Bacteria_large_SRP links to Rfam database...	0.56	0.31	1.00	27	36558	4	0	0	4	60
SRP_00038	Bacteria_small_SRP links to Rfam database...	0.90	0.82	1.00	27	5023	3	0	0	3	6
SRP_00040	Bacteria_small_SRP links to Rfam database...	0.55	0.52	0.59	16	5538	14	1	10	3	15
SRP_00042	Bacteria_small_SRP links to Rfam database...	0.85	0.80	0.91	20	3983	6	1	1	4	5
SRP_00043	Bacteria_small_SRP links to Rfam database...	0.42	0.41	0.43	12	5022	18	2	14	2	17
SRP_00044	Bacteria_small_SRP links to Rfam database...	0.85	0.81	0.90	26	6076	4	1	2	1	6
SRP_00046	Bacteria_small_SRP links to Rfam database...	0.94	0.88	1.00	28	4725	2	0	0	2	4
SRP_00050	Metazoa_SRP links to Rfam database...	0.94	0.88	1.00	87	44763	5	0	0	5	12
SRP_00051	Bacteria_small_SRP links to Rfam database...	0.76	0.67	0.87	20	5437	7	0	3	4	10
SRP_00053	Metazoa_SRP links to Rfam database...	0.89	0.84	0.94	79	45066	13	0	5	8	15
SRP_00054	Bacteria_small_SRP links to Rfam database...	0.92	0.84	1.00	27	5538	3	0	0	3	5
SRP_00056	Bacteria_small_SRP links to Rfam database...	0.63	0.54	0.74	20	6414	9	1	6	2	17
SRP_00057	Bacteria_small_SRP links to Rfam database...	0.79	0.69	0.92	24	6302	6	1	1	4	11
SRP_00058	Bacteria_small_SRP links to Rfam database...	0.88	0.82	0.93	28	5748	2	1	1	0	6
SRP_00060	Metazoa_SRP links to Rfam database...	0.93	0.86	1.00	86	44465	5	0	0	5	14
SRP_00061	Metazoa_SRP links to Rfam database...	0.92	0.85	1.00	85	44765	6	0	0	6	15
SRP_00066	Metazoa_SRP links to Rfam database...	0.91	0.82	1.00	82	45369	10	0	0	10	18
SRP_00067	Bacteria_small_SRP links to Rfam database...	0.81	0.71	0.93	27	5749	3	1	1	1	11
SRP_00069	Fungi_SRP links to Rfam database...	0.62	0.49	0.78	42	34399	16	2	10	4	43
SRP_00070	Fungi_SRP links to Rfam database...	0.59	0.40	0.87	48	126701	14	0	7	7	73
SRP_00072	Bacteria_small_SRP links to Rfam database...	0.68	0.66	0.70	19	6301	11	0	8	3	10
SRP_00073	Fungi_SRP links to Rfam database...	0.56	0.49	0.65	35	39006	24	6	13	5	36
SRP_00074	Bacteria_small_SRP links to Rfam database...	0.52	0.48	0.56	14	6530	16	0	11	5	15
SRP_00075	Bacteria_small_SRP links to Rfam database...	0.34	0.32	0.37	11	5535	19	0	19	0	23
SRP_00077	Bacteria_small_SRP links to Rfam database...	0.59	0.51	0.68	19	6642	11	0	9	2	18
SRP_00079	Plant_SRP links to Rfam database...	0.74	0.68	0.81	60	41831	29	0	14	15	28
SRP_00081	Bacteria_small_SRP links to Rfam database...	0.65	0.65	0.67	20	5535	10	1	9	0	11
SRP_00084	Bacteria_small_SRP links to Rfam database...	0.88	0.82	0.93	28	5430	2	1	1	0	6
SRP_00085	Plant_SRP links to Rfam database...	0.86	0.78	0.95	79	45368	13	0	4	9	22
SRP_00086	Metazoa_SRP links to Rfam database...	0.94	0.88	1.00	88	44165	4	0	0	4	12
SRP_00087	Fungi_SRP links to Rfam database...	0.40	0.33	0.49	19	37362	26	5	15	6	39
SRP_00088	Bacteria_large_SRP links to Rfam database...	0.55	0.30	1.00	27	34164	4	0	0	4	62
SRP_00089	Bacteria_large_SRP links to Rfam database...	0.55	0.30	1.00	27	35751	4	0	0	4	63
SRP_00090	Bacteria_large_SRP links to Rfam database...	0.55	0.30	1.00	27	35484	4	0	0	4	63
SRP_00091	Fungi_SRP links to Rfam database...	0.59	0.46	0.75	44	52916	19	2	13	4	51
SRP_00094	Bacteria_small_SRP links to Rfam database...	0.82	0.83	0.80	20	4070	9	1	4	4	4
SRP_00095	Bacteria_small_SRP links to Rfam database...	0.82	0.84	0.81	21	3979	8	1	4	3	4
SRP_00098	Bacteria_small_SRP links to Rfam database...	0.65	0.57	0.75	21	6413	9	1	6	2	16
SRP_00099	Plant_SRP links to Rfam database...	0.61	0.58	0.64	55	44764	35	2	29	4	40
SRP_00102	Metazoa_SRP links to Rfam database...	0.93	0.86	1.00	87	44464	5	0	0	5	14
SRP_00103	Metazoa_SRP links to Rfam database...	0.93	0.86	1.00	88	45363	4	0	0	4	14
SRP_00104	Fungi_SRP links to Rfam database...	0.52	0.45	0.60	31	34401	23	6	15	2	38
SRP_00105	Bacteria_small_SRP links to Rfam database...	0.89	0.79	1.00	27	5538	3	0	0	3	7
SRP_00106	Bacteria_large_SRP links to Rfam database...	0.69	0.72	0.67	18	5226	15	3	6	6	7
SRP_00107	Bacteria_small_SRP links to Rfam database...	0.46	0.53	0.40	10	3630	19	3	12	4	9
SRP_00117	Metazoa_SRP links to Rfam database...	0.91	0.83	1.00	85	45366	6	0	0	6	17
SRP_00121	Bacteria_small_SRP links to Rfam database...	0.82	0.80	0.83	20	4254	6	0	4	2	5
SRP_00123	Metazoa_SRP links to Rfam database...	0.78	0.68	0.90	62	36516	15	1	6	8	29
SRP_00124	Metazoa_SRP links to Rfam database...	0.64	0.58	0.72	49	37060	31	3	16	12	36
SRP_00127	Fungi_SRP links to Rfam database...	0.61	0.43	0.88	51	72332	10	0	7	3	68
SRP_00128	Bacteria_small_SRP links to Rfam database...	0.82	0.72	0.93	26	6758	4	1	1	2	10
SRP_00130	Archaea_SRP links to Rfam database...	0.76	0.69	0.83	67	49689	25	1	13	11	30
SRP_00132	Bacteria_small_SRP links to Rfam database...	0.73	0.69	0.77	20	4825	9	0	6	3	9
SRP_00134	Bacteria_large_SRP links to Rfam database...	0.70	0.62	0.78	18	5972	13	0	5	8	11
SRP_00136	Fungi_SRP links to Rfam database...	0.61	0.54	0.70	38	44199	24	8	8	8	33
SRP_00137	Bacteria_small_SRP links to Rfam database...	0.66	0.68	0.65	17	4160	10	3	6	1	8
SRP_00141	Bacteria_small_SRP links to Rfam database...	0.78	0.66	0.93	27	6299	3	1	1	1	14
SRP_00142	Archaea_SRP links to Rfam database...	0.89	0.84	0.94	78	45973	13	0	5	8	15
SRP_00143	Archaea_SRP links to Rfam database...	0.81	0.76	0.87	77	49681	21	0	12	9	24
SRP_00144	Archaea_SRP links to Rfam database...	0.89	0.84	0.94	79	46581	14	0	5	9	15
SRP_00145	Bacteria_small_SRP links to Rfam database...	0.81	0.70	0.93	28	6298	2	1	1	0	12
SRP_00146	Bacteria_small_SRP links to Rfam database...	0.83	0.75	0.93	27	5224	3	1	1	1	9
SRP_00148	Fungi_SRP links to Rfam database...	0.73	0.57	0.93	50	50032	10	0	4	6	37
SRP_00152	Plant_SRP links to Rfam database...	0.86	0.79	0.93	81	45666	11	0	6	5	22
SRP_00153	Plant_SRP links to Rfam database...	0.89	0.79	0.99	85	46885	7	0	1	6	22
SRP_00157	Fungi_SRP links to Rfam database...	0.62	0.51	0.76	37	44204	20	3	9	8	35
SRP_00158	Fungi_SRP links to Rfam database...	0.49	0.35	0.68	40	124192	20	7	12	1	75
SRP_00160	Fungi_SRP links to Rfam database...	0.60	0.41	0.90	53	86261	10	1	5	4	77
SRP_00161	Bacteria_small_SRP links to Rfam database...	0.84	0.82	0.86	18	2829	5	0	3	2	4
SRP_00162	Bacteria_small_SRP links to Rfam database...	0.87	0.87	0.87	20	2903	4	0	3	1	3
SRP_00163	Bacteria_small_SRP links to Rfam database...	0.84	0.81	0.88	21	3462	5	0	3	2	5
SRP_00164	Bacteria_small_SRP links to Rfam database...	0.78	0.66	0.92	23	6878	7	1	1	5	12
SRP_00170	Bacteria_small_SRP links to Rfam database...	0.83	0.76	0.90	19	4074	6	1	1	4	6
SRP_00171	Metazoa_SRP links to Rfam database...	0.92	0.85	1.00	75	45376	17	0	0	17	13
SRP_00173	Bacteria_large_SRP links to Rfam database...	0.54	0.29	1.00	26	38200	5	0	0	5	64
SRP_00174	Bacteria_large_SRP links to Rfam database...	0.56	0.31	1.00	27	38754	4	0	0	4	59
SRP_00175	Fungi_SRP links to Rfam database...	0.60	0.48	0.77	40	44499	19	0	12	7	44
SRP_00178	Plant_SRP links to Rfam database...	0.91	0.83	0.99	85	45667	7	0	1	6	17
SRP_00179	Plant_SRP links to Rfam database...	0.89	0.79	1.00	83	45973	9	0	0	9	22
SRP_00181	Plant_SRP links to Rfam database...	0.85	0.78	0.93	80	45970	13	0	6	7	22
SRP_00182	Plant_SRP links to Rfam database...	0.87	0.79	0.95	80	45972	11	0	4	7	21
SRP_00184	Plant_SRP links to Rfam database...	0.85	0.78	0.92	78	45971	15	0	7	8	22
SRP_00188	Plant_SRP links to Rfam database...	0.88	0.85	0.91	67	31051	13	0	7	6	12
SRP_00194	Bacteria_small_SRP links to Rfam database...	0.71	0.71	0.71	15	3219	9	0	6	3	6
SRP_00197	Archaea_SRP links to Rfam database...	0.90	0.83	0.97	84	49368	12	0	3	9	17
SRP_00198	Archaea_SRP links to Rfam database...	0.90	0.83	0.97	86	50951	11	0	3	8	17
SRP_00199	Archaea_SRP links to Rfam database...	0.87	0.81	0.93	85	50949	12	0	6	6	20
SRP_00200	Bacteria_small_SRP links to Rfam database...	0.77	0.67	0.89	24	6876	6	1	2	3	12
SRP_00201	Archaea_SRP links to Rfam database...	0.88	0.80	0.97	89	47803	4	0	3	1	22
SRP_00202	Archaea_SRP links to Rfam database...	0.86	0.76	0.97	89	54193	7	0	3	4	28
SRP_00203	Archaea_SRP links to Rfam database...	0.76	0.70	0.84	73	48741	18	0	14	4	32
SRP_00204	Archaea_SRP links to Rfam database...	0.86	0.79	0.94	81	49055	13	0	5	8	21
SRP_00206	Archaea_SRP links to Rfam database...	0.90	0.82	0.98	89	47804	5	0	2	3	19
SRP_00208	Archaea_SRP links to Rfam database...	0.87	0.79	0.96	80	46582	12	0	3	9	21
SRP_00209	Bacteria_small_SRP links to Rfam database...	0.75	0.74	0.77	20	4630	9	1	5	3	7
SRP_00213	Bacteria_small_SRP links to Rfam database...	0.92	0.92	0.92	23	4161	6	1	1	4	2
SRP_00215	Bacteria_small_SRP links to Rfam database...	0.86	0.84	0.88	21	3216	4	0	3	1	4
SRP_00216	Bacteria_small_SRP links to Rfam database...	0.93	0.93	0.93	25	3376	4	1	1	2	2
SRP_00217	Bacteria_small_SRP links to Rfam database...	0.89	0.88	0.91	21	3298	4	0	2	2	3
SRP_00219	Bacteria_small_SRP links to Rfam database...	0.89	0.87	0.91	20	3299	5	0	2	3	3
SRP_00222	Bacteria_small_SRP links to Rfam database...	0.87	0.84	0.91	21	3058	3	1	1	1	4
SRP_00227	Bacteria_small_SRP links to Rfam database...	0.86	0.81	0.93	25	5124	5	1	1	3	6
SRP_00228	Metazoa_SRP links to Rfam database...	0.92	0.86	0.99	82	45368	10	0	1	9	13
SRP_00229	Bacteria_small_SRP links to Rfam database...	0.41	0.41	0.42	11	5227	19	0	15	4	16
SRP_00230	Fungi_SRP links to Rfam database...	0.75	0.57	0.98	51	39569	6	0	1	5	39
SRP_00231	Bacteria_small_SRP links to Rfam database...	0.88	0.82	0.93	28	5430	2	1	1	0	6
SRP_00233	Bacteria_small_SRP links to Rfam database...	0.87	0.82	0.93	27	5122	3	0	2	1	6
SRP_00234	Bacteria_large_SRP links to Rfam database...	0.55	0.30	1.00	26	36289	5	0	0	5	60
SRP_00239	Plant_SRP links to Rfam database...	0.50	0.48	0.51	45	50315	47	5	38	4	48
SRP_00240	Plant_SRP links to Rfam database...	0.76	0.69	0.83	70	48121	21	1	13	7	32
SRP_00241	Plant_SRP links to Rfam database...	0.53	0.51	0.55	42	45979	47	8	27	12	40
SRP_00243	Bacteria_small_SRP links to Rfam database...	0.88	0.81	0.96	25	5125	5	0	1	4	6
SRP_00244	Bacteria_small_SRP links to Rfam database...	0.74	0.62	0.89	24	6876	5	1	2	2	15
SRP_00247	Metazoa_SRP links to Rfam database...	0.58	0.56	0.59	49	47195	40	6	28	6	38
SRP_00250	Bacteria_small_SRP links to Rfam database...	0.67	0.58	0.78	21	6759	9	1	5	3	15
SRP_00251	Bacteria_small_SRP links to Rfam database...	0.77	0.67	0.89	24	6994	6	1	2	3	12
SRP_00252	Metazoa_SRP links to Rfam database...	0.62	0.58	0.65	52	49061	40	5	23	12	37
SRP_00253	Metazoa_SRP links to Rfam database...	0.62	0.59	0.65	53	49374	38	5	23	10	37
SRP_00254	Fungi_SRP links to Rfam database...	0.32	0.28	0.36	17	32338	35	6	24	5	44
SRP_00255	Archaea_SRP links to Rfam database...	0.78	0.73	0.82	69	47502	25	1	14	10	25
SRP_00257	Metazoa_SRP links to Rfam database...	0.54	0.47	0.62	51	50958	33	5	26	2	57
SRP_00260	Metazoa_SRP links to Rfam database...	0.58	0.52	0.64	52	47814	34	5	24	5	48
SRP_00265	Fungi_SRP links to Rfam database...	0.64	0.55	0.75	40	41275	21	3	10	8	33
SRP_00266	Bacteria_small_SRP links to Rfam database...	0.55	0.55	0.55	16	4627	14	2	11	1	13
SRP_00267	Metazoa_SRP links to Rfam database...	0.91	0.85	0.96	82	44466	8	0	3	5	14
SRP_00268	Bacteria_small_SRP links to Rfam database...	0.91	0.89	0.92	24	4160	5	1	1	3	3
SRP_00269	Bacteria_small_SRP links to Rfam database...	0.68	0.64	0.72	21	5021	9	0	8	1	12
SRP_00270	Bacteria_small_SRP links to Rfam database...	0.86	0.81	0.93	25	4629	5	0	2	3	6
SRP_00271	Bacteria_small_SRP links to Rfam database...	0.89	0.88	0.91	21	3217	3	0	2	1	3
SRP_00273	Bacteria_small_SRP links to Rfam database...	0.79	0.68	0.93	27	6757	3	1	1	1	13
SRP_00274	Bacteria_small_SRP links to Rfam database...	0.81	0.71	0.93	27	6874	3	1	1	1	11
SRP_00276	Archaea_SRP links to Rfam database...	0.89	0.82	0.98	90	50629	6	0	2	4	20
SRP_00278	Archaea_SRP links to Rfam database...	0.83	0.74	0.92	78	45971	10	0	7	3	27
SRP_00282	Metazoa_SRP links to Rfam database...	0.37	0.43	0.33	27	43282	65	17	39	9	36
SRP_00285	Bacteria_small_SRP links to Rfam database...	0.87	0.77	1.00	23	3718	2	0	0	2	7
SRP_00286	Fungi_SRP links to Rfam database...	0.51	0.30	0.87	52	136966	10	0	8	2	122
SRP_00287	Fungi_SRP links to Rfam database...	0.58	0.36	0.94	58	141716	4	0	4	0	104
SRP_00290	Fungi_SRP links to Rfam database...	0.52	0.33	0.80	45	100520	16	0	11	5	90
SRP_00292	Fungi_SRP links to Rfam database...	0.51	0.30	0.88	52	137491	10	0	7	3	121
SRP_00294	Fungi_SRP links to Rfam database...	0.58	0.34	0.98	57	129228	4	0	1	3	110
SRP_00295	Bacteria_small_SRP links to Rfam database...	0.78	0.66	0.93	25	6876	5	1	1	3	13
SRP_00299	Metazoa_SRP links to Rfam database...	0.88	0.81	0.96	80	44170	12	0	3	9	19
SRP_00300	Metazoa_SRP links to Rfam database...	0.92	0.87	0.98	82	44169	10	0	2	8	12
SRP_00301	Fungi_SRP links to Rfam database...	0.68	0.50	0.93	43	32594	11	0	3	8	43
SRP_00302	Fungi_SRP links to Rfam database...	0.60	0.49	0.74	40	41562	20	0	14	6	41
SRP_00303	Bacteria_small_SRP links to Rfam database...	0.68	0.63	0.74	20	6643	10	1	6	3	12
SRP_00308	Bacteria_large_SRP links to Rfam database...	0.55	0.31	1.00	27	36288	4	0	0	4	61
SRP_00310	Bacteria_small_SRP links to Rfam database...	0.82	0.83	0.83	19	2903	5	0	4	1	4
SRP_00312	Bacteria_small_SRP links to Rfam database...	0.91	0.89	0.92	24	4160	5	1	1	3	3
SRP_00315	Bacteria_small_SRP links to Rfam database...	0.81	0.83	0.79	19	2902	5	0	5	0	4
SRP_00317	Metazoa_SRP links to Rfam database...	0.90	0.84	0.98	82	45066	10	0	2	8	16
SRP_00318	Bacteria_small_SRP links to Rfam database...	0.81	0.83	0.79	19	2979	5	0	5	0	4
SRP_00321	Archaea_SRP links to Rfam database...	0.87	0.80	0.96	86	47496	8	1	3	4	22
SRP_00322	Archaea_SRP links to Rfam database...	0.83	0.74	0.93	81	48429	10	0	6	4	28
SRP_00323	Archaea_SRP links to Rfam database...	0.89	0.81	0.98	87	47189	7	0	2	5	20
SRP_00324	Bacteria_small_SRP links to Rfam database...	0.62	0.59	0.65	17	5330	10	1	8	1	12
SRP_00325	Bacteria_small_SRP links to Rfam database...	0.87	0.82	0.93	27	4342	3	0	2	1	6
SRP_00326	Bacteria_small_SRP links to Rfam database...	0.86	0.81	0.93	25	5023	5	0	2	3	6
SRP_00328	Metazoa_SRP links to Rfam database...	0.59	0.54	0.65	46	39550	30	5	20	5	39
SRP_00329	Metazoa_SRP links to Rfam database...	0.71	0.64	0.79	54	39835	24	2	12	10	31
SRP_00330	Archaea_SRP links to Rfam database...	0.82	0.76	0.88	72	50004	21	1	9	11	23
SRP_00331	Metazoa_SRP links to Rfam database...	0.65	0.59	0.73	51	37605	26	2	17	7	36
SRP_00332	Archaea_SRP links to Rfam database...	0.91	0.84	0.98	89	50312	6	0	2	4	17
SRP_00333	Bacteria_small_SRP links to Rfam database...	0.86	0.79	0.93	27	5122	3	0	2	1	7
SRP_00335	Bacteria_large_SRP links to Rfam database...	0.46	0.38	0.56	15	35218	16	7	5	4	24
SRP_00337	Bacteria_large_SRP links to Rfam database...	0.54	0.30	1.00	27	35484	4	0	0	4	64
SRP_00338	Bacteria_small_SRP links to Rfam database...	0.90	0.81	1.00	29	5431	1	0	0	1	7
SRP_00339	Archaea_SRP links to Rfam database...	0.81	0.74	0.88	70	44471	17	1	9	7	24
SRP_00340	Metazoa_SRP links to Rfam database...	0.55	0.52	0.59	43	41255	43	5	25	13	39
SRP_00341	Bacteria_small_SRP links to Rfam database...	0.44	0.42	0.46	13	4725	17	0	15	2	18
SRP_00342	Bacteria_small_SRP links to Rfam database...	0.72	0.72	0.72	18	3980	12	0	7	5	7
SRP_00347	Metazoa_SRP links to Rfam database...	0.90	0.83	0.96	80	46582	12	0	3	9	16
SRP_00350	Bacteria_small_SRP links to Rfam database...	0.84	0.78	0.91	21	3893	4	1	1	2	6
SRP_00356	Bacteria_small_SRP links to Rfam database...	0.80	0.73	0.88	22	5025	6	0	3	3	8
SRP_00357	Bacteria_small_SRP links to Rfam database...	0.82	0.72	0.93	26	5328	4	1	1	2	10
SRP_00358	Bacteria_small_SRP links to Rfam database...	0.81	0.71	0.93	25	6301	5	1	1	3	10
SRP_00361	Plant_SRP links to Rfam database...	0.71	0.67	0.76	60	41826	27	5	14	8	30
SRP_00363	Bacteria_small_SRP links to Rfam database...	0.82	0.77	0.88	23	4727	7	0	3	4	7
SRP_00365	Bacteria_small_SRP links to Rfam database...	0.84	0.78	0.91	21	3380	4	0	2	2	6
SRP_00367	Bacteria_small_SRP links to Rfam database...	0.79	0.69	0.92	24	6760	6	1	1	4	11
SRP_00368	Metazoa_SRP links to Rfam database...	0.93	0.87	1.00	85	43871	7	0	0	7	13
SRP_00369	Bacteria_small_SRP links to Rfam database...	0.78	0.66	0.92	23	5753	7	1	1	5	12
SRP_00371	Fungi_SRP links to Rfam database...	0.63	0.50	0.80	41	36264	17	0	10	7	41
SRP_00382	Fungi_SRP links to Rfam database...	0.60	0.36	0.98	62	141715	1	0	1	0	108
SRP_00383	Bacteria_small_SRP links to Rfam database...	0.92	0.92	0.92	22	3216	6	0	2	4	2
TMR_00173	tmRNA links to Rfam database...	0.12	0.07	0.19	3	42179	23	0	13	10	39
TMR_00357	tmRNA links to Rfam database...	0.37	0.26	0.52	24	82982	24	7	15	2	68
TMR_00601	tmRNA links to Rfam database...	0.51	0.38	0.70	16	58973	33	2	5	26	26
TMR_00696	tmRNA links to Rfam database...	0.44	0.30	0.65	34	85026	19	2	16	1	80

^top

Performance of Contrafold - scored lower in this pairwise comparison

1. Total counts & total scores for Contrafold

Total Base Pair Counts
Total TP	43962
Total TN	104867100
Total FP	34818
Total FP CONTRA	4116
Total FP INCONS	24658
Total FP COMP	6044
Total FN	33840

Total Scores
MCC	0.584
Average MCC ± 95% Confidence Intervals	0.622 ± 0.016
Sensitivity	0.565
Positive Predictive Value	0.604
Nr of predictions	706

^top

2. Individual counts for Contrafold [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00001	RNaseP_arch links to Rfam database...	0.80	0.77	0.83	58	34121	21	3	9	9	17
ASE_00002	RNaseP_arch links to Rfam database...	0.59	0.56	0.61	41	35444	30	2	24	4	32
ASE_00004	RNaseP_bact_a links to Rfam database...	0.70	0.68	0.72	66	47803	28	5	21	2	31
ASE_00005	RNaseP_bact_a links to Rfam database...	0.62	0.56	0.69	65	57876	30	0	29	1	52
ASE_00006	RNaseP_bact_a links to Rfam database...	0.52	0.52	0.53	48	47495	47	7	36	4	45
ASE_00007	RNaseP_bact_a links to Rfam database...	0.53	0.49	0.57	54	59591	45	1	39	5	56
ASE_00009	RNaseP_arch links to Rfam database...	0.66	0.64	0.68	43	26043	23	1	19	3	24
ASE_00010	RNaseP_bact_b links to Rfam database...	0.77	0.71	0.84	58	49701	26	3	8	15	24
ASE_00012	RNaseP_bact_a links to Rfam database...	0.54	0.50	0.58	61	73815	53	2	42	9	62
ASE_00014	RNaseP_arch links to Rfam database...	0.53	0.53	0.53	56	54179	54	6	44	4	50
ASE_00017	RNaseP_nuc links to Rfam database...	0.12	0.14	0.11	9	50957	94	18	56	20	55
ASE_00018	RNaseP_bact_a links to Rfam database...	0.62	0.59	0.66	79	80481	42	2	39	1	55
ASE_00020	RNaseP_bact_a links to Rfam database...	0.68	0.62	0.74	78	73815	31	1	26	4	48
ASE_00021	RNaseP_bact_a links to Rfam database...	0.65	0.61	0.69	97	104056	50	3	40	7	63
ASE_00022	RNaseP_bact_b links to Rfam database...	0.33	0.31	0.35	39	82918	77	2	69	6	85
ASE_00023	RNaseP_bact_a links to Rfam database...	0.68	0.68	0.68	86	84129	45	4	36	5	41
ASE_00025	RNaseP_nuc links to Rfam database...	0.35	0.38	0.32	27	78521	109	13	45	51	44
ASE_00026	RNaseP_bact_a links to Rfam database...	0.55	0.52	0.59	57	59589	44	3	36	5	53
ASE_00028	RNaseP_bact_b links to Rfam database...	0.69	0.66	0.72	83	84551	44	4	28	12	43
ASE_00029	RNaseP_bact_a links to Rfam database...	0.64	0.61	0.68	75	82917	40	7	29	4	47
ASE_00030	RNaseP_bact_a links to Rfam database...	0.72	0.66	0.77	96	85367	30	4	24	2	49
ASE_00031	RNaseP_bact_a links to Rfam database...	0.58	0.56	0.61	70	86622	51	2	42	7	56
ASE_00032	RNaseP_bact_a links to Rfam database...	0.55	0.52	0.59	61	80097	47	3	39	5	57
ASE_00033	RNaseP_bact_a links to Rfam database...	0.52	0.46	0.60	56	64886	41	1	37	3	65
ASE_00035	RNaseP_bact_a links to Rfam database...	0.40	0.36	0.43	43	70401	62	4	52	6	75
ASE_00036	RNaseP_bact_a links to Rfam database...	0.62	0.58	0.67	76	75742	43	7	30	6	56
ASE_00037	RNaseP_bact_a links to Rfam database...	0.60	0.53	0.69	58	59256	28	1	25	2	52
ASE_00038	RNaseP_bact_a links to Rfam database...	0.54	0.50	0.58	51	53540	41	6	31	4	50
ASE_00040	RNaseP_bact_a links to Rfam database...	0.14	0.14	0.15	19	78875	114	8	101	5	114
ASE_00041	RNaseP_bact_a links to Rfam database...	0.67	0.61	0.73	66	57539	29	2	23	4	42
ASE_00042	RNaseP_bact_a links to Rfam database...	0.57	0.54	0.60	79	89969	57	2	50	5	66
ASE_00044	RNaseP_bact_a links to Rfam database...	0.68	0.67	0.69	70	54513	37	5	27	5	35
ASE_00045	RNaseP_bact_b links to Rfam database...	0.57	0.54	0.61	43	47208	35	8	19	8	37
ASE_00046	RNaseP_bact_a links to Rfam database...	0.64	0.55	0.73	57	50325	23	1	20	2	46
ASE_00047	RNaseP_bact_a links to Rfam database...	0.56	0.50	0.62	65	74200	42	1	39	2	65
ASE_00052	RNaseP_bact_a links to Rfam database...	0.63	0.55	0.71	62	61338	29	0	25	4	50
ASE_00053	RNaseP_bact_a links to Rfam database...	0.69	0.65	0.72	87	79280	39	10	24	5	46
ASE_00057	RNaseP_bact_a links to Rfam database...	0.69	0.66	0.72	89	82091	41	9	26	6	45
ASE_00064	RNaseP_bact_a links to Rfam database...	0.60	0.56	0.65	50	45374	37	2	25	10	39
ASE_00066	RNaseP_bact_a links to Rfam database...	0.62	0.58	0.66	75	72276	39	3	36	0	55
ASE_00068	RNaseP_bact_a links to Rfam database...	0.69	0.61	0.79	52	37609	14	1	13	0	33
ASE_00069	RNaseP_bact_a links to Rfam database...	0.63	0.59	0.67	83	82905	45	4	36	5	57
ASE_00074	RNaseP_bact_a links to Rfam database...	0.49	0.49	0.50	58	67781	59	7	50	2	61
ASE_00075	RNaseP_bact_a links to Rfam database...	0.74	0.69	0.80	111	108673	34	3	24	7	51
ASE_00076	RNaseP_bact_a links to Rfam database...	0.47	0.44	0.50	52	68160	56	4	49	3	66
ASE_00077	RNaseP_bact_a links to Rfam database...	0.73	0.67	0.78	58	45076	22	3	13	6	28
ASE_00078	RNaseP_bact_a links to Rfam database...	0.73	0.66	0.81	55	43003	20	0	13	7	28
ASE_00079	RNaseP_bact_a links to Rfam database...	0.56	0.53	0.60	53	55522	39	3	33	3	47
ASE_00080	RNaseP_bact_a links to Rfam database...	0.59	0.57	0.61	70	71517	49	6	38	5	53
ASE_00081	RNaseP_bact_a links to Rfam database...	0.61	0.58	0.64	56	49682	34	5	27	2	41
ASE_00082	RNaseP_bact_a links to Rfam database...	0.79	0.72	0.87	83	70405	24	1	11	12	33
ASE_00083	RNaseP_bact_a links to Rfam database...	0.76	0.71	0.81	78	62385	25	0	18	7	32
ASE_00084	RNaseP_bact_a links to Rfam database...	0.74	0.73	0.76	72	53533	30	2	21	7	27
ASE_00087	RNaseP_bact_a links to Rfam database...	0.74	0.72	0.76	103	88275	33	4	28	1	41
ASE_00090	RNaseP_bact_a links to Rfam database...	0.67	0.67	0.66	68	55508	43	4	31	8	33
ASE_00092	RNaseP_bact_a links to Rfam database...	0.82	0.80	0.85	90	63440	23	6	10	7	23
ASE_00096	RNaseP_bact_a links to Rfam database...	0.70	0.62	0.80	71	63457	20	0	18	2	44
ASE_00099	RNaseP_bact_a links to Rfam database...	0.53	0.51	0.55	61	64510	51	5	44	2	59
ASE_00100	RNaseP_nuc links to Rfam database...	0.26	0.28	0.24	21	82127	115	15	52	48	55
ASE_00102	RNaseP_bact_a links to Rfam database...	0.46	0.43	0.50	72	117711	76	7	65	4	94
ASE_00104	RNaseP_bact_a links to Rfam database...	0.71	0.69	0.73	82	64148	33	4	27	2	37
ASE_00105	RNaseP_bact_a links to Rfam database...	0.53	0.50	0.57	55	64165	49	7	34	8	56
ASE_00107	RNaseP_bact_a links to Rfam database...	0.69	0.68	0.70	86	73030	38	4	33	1	41
ASE_00108	RNaseP_nuc links to Rfam database...	0.49	0.51	0.48	32	46904	72	10	25	37	31
ASE_00111	RNaseP_nuc links to Rfam database...	0.18	0.21	0.15	12	50008	84	20	46	18	45
ASE_00112	RNaseP_bact_a links to Rfam database...	0.76	0.72	0.81	83	75364	29	4	15	10	33
ASE_00114	RNaseP_bact_b links to Rfam database...	0.52	0.47	0.57	36	45388	40	0	27	13	41
ASE_00115	RNaseP_bact_a links to Rfam database...	0.69	0.69	0.69	70	54513	40	6	26	8	31
ASE_00116	RNaseP_arch links to Rfam database...	0.46	0.42	0.50	28	31570	31	0	28	3	38
ASE_00118	RNaseP_bact_a links to Rfam database...	0.64	0.62	0.66	63	60631	35	4	28	3	39
ASE_00119	RNaseP_bact_a links to Rfam database...	0.73	0.72	0.74	78	62729	31	3	25	3	30
ASE_00120	RNaseP_arch links to Rfam database...	0.60	0.57	0.64	54	46886	31	6	25	0	40
ASE_00121	RNaseP_arch links to Rfam database...	0.28	0.27	0.29	25	45063	64	6	56	2	67
ASE_00122	RNaseP_bact_a links to Rfam database...	0.68	0.65	0.71	57	43285	25	1	22	2	31
ASE_00123	RNaseP_bact_a links to Rfam database...	0.57	0.54	0.61	46	38427	34	4	26	4	39
ASE_00125	RNaseP_bact_a links to Rfam database...	0.76	0.70	0.82	62	39264	22	3	11	8	26
ASE_00128	RNaseP_bact_a links to Rfam database...	0.79	0.72	0.88	72	53219	16	1	9	6	28
ASE_00129	RNaseP_bact_a links to Rfam database...	0.70	0.66	0.74	73	62737	30	1	24	5	38
ASE_00131	RNaseP_bact_a links to Rfam database...	0.71	0.65	0.79	55	39270	25	1	14	10	30
ASE_00132	RNaseP_bact_a links to Rfam database...	0.57	0.48	0.67	46	50334	25	2	21	2	49
ASE_00134	RNaseP_bact_a links to Rfam database...	0.43	0.41	0.46	39	50318	50	3	43	4	56
ASE_00135	RNaseP_bact_a links to Rfam database...	0.63	0.57	0.69	62	63100	35	1	27	7	47
ASE_00136	RNaseP_bact_a links to Rfam database...	0.60	0.54	0.66	50	48129	37	1	25	11	42
ASE_00137	RNaseP_bact_a links to Rfam database...	0.79	0.76	0.82	74	48426	20	4	12	4	24
ASE_00138	RNaseP_bact_a links to Rfam database...	0.59	0.56	0.63	45	40399	27	7	19	1	36
ASE_00139	RNaseP_bact_a links to Rfam database...	0.66	0.59	0.74	61	54203	25	0	21	4	43
ASE_00140	RNaseP_bact_a links to Rfam database...	0.76	0.70	0.83	88	70770	19	3	15	1	37
ASE_00142	RNaseP_bact_a links to Rfam database...	0.60	0.59	0.62	72	67045	50	5	39	6	50
ASE_00145	RNaseP_arch links to Rfam database...	0.60	0.59	0.60	66	70015	50	7	37	6	45
ASE_00146	RNaseP_bact_a links to Rfam database...	0.50	0.48	0.53	60	70762	55	7	47	1	64
ASE_00148	RNaseP_arch links to Rfam database...	0.79	0.78	0.81	120	112426	34	5	24	5	34
ASE_00151	RNaseP_bact_a links to Rfam database...	0.46	0.45	0.47	44	51909	52	11	39	2	54
ASE_00153	RNaseP_nuc links to Rfam database...	0.41	0.42	0.40	31	57553	80	7	39	34	42
ASE_00154	RNaseP_arch links to Rfam database...	0.74	0.72	0.76	77	65240	31	2	22	7	30
ASE_00155	RNaseP_arch links to Rfam database...	0.60	0.58	0.61	83	93392	56	4	49	3	59
ASE_00161	RNaseP_bact_b links to Rfam database...	0.44	0.44	0.45	38	53544	50	9	37	4	49
ASE_00163	RNaseP_bact_a links to Rfam database...	0.34	0.32	0.37	30	53219	62	4	48	10	63
ASE_00165	RNaseP_bact_a links to Rfam database...	0.71	0.66	0.77	67	52888	21	4	16	1	34
ASE_00168	RNaseP_nuc links to Rfam database...	0.32	0.38	0.27	24	60636	84	21	45	18	40
ASE_00169	RNaseP_bact_a links to Rfam database...	0.54	0.50	0.58	53	57200	43	1	37	5	54
ASE_00170	RNaseP_bact_a links to Rfam database...	0.65	0.61	0.70	57	48746	26	4	21	1	36
ASE_00171	RNaseP_bact_a links to Rfam database...	0.74	0.71	0.77	67	48429	24	5	15	4	27
ASE_00172	RNaseP_bact_a links to Rfam database...	0.83	0.77	0.88	82	58903	15	2	9	4	24
ASE_00174	RNaseP_bact_a links to Rfam database...	0.62	0.58	0.66	63	60979	34	7	26	1	46
ASE_00175	RNaseP_bact_a links to Rfam database...	0.35	0.34	0.36	36	59932	73	3	60	10	71
ASE_00176	RNaseP_bact_a links to Rfam database...	0.56	0.51	0.62	56	59941	40	4	30	6	54
ASE_00179	RNaseP_bact_a links to Rfam database...	0.75	0.69	0.81	58	44181	21	3	11	7	26
ASE_00180	RNaseP_bact_a links to Rfam database...	0.77	0.71	0.85	71	51276	18	4	9	5	29
ASE_00181	RNaseP_bact_a links to Rfam database...	0.44	0.42	0.46	45	57532	55	5	48	2	61
ASE_00182	RNaseP_bact_a links to Rfam database...	0.66	0.63	0.70	86	84132	38	2	35	1	50
ASE_00184	RNaseP_bact_a links to Rfam database...	0.76	0.77	0.75	79	54509	30	5	22	3	23
ASE_00185	RNaseP_bact_a links to Rfam database...	0.74	0.69	0.80	88	73426	28	2	20	6	40
ASE_00186	RNaseP_bact_a links to Rfam database...	0.75	0.72	0.79	95	78882	35	3	23	9	37
ASE_00187	RNaseP_arch links to Rfam database...	0.38	0.37	0.40	42	68531	68	5	57	6	73
ASE_00189	RNaseP_bact_b links to Rfam database...	0.59	0.53	0.66	54	63108	35	0	28	7	48
ASE_00190	RNaseP_bact_b links to Rfam database...	0.53	0.46	0.61	41	45384	33	3	23	7	49
ASE_00191	RNaseP_arch links to Rfam database...	0.70	0.67	0.73	41	29590	20	1	14	5	20
ASE_00192	RNaseP_bact_b links to Rfam database...	0.65	0.61	0.70	81	84551	40	5	29	6	52
ASE_00194	RNaseP_bact_b links to Rfam database...	0.48	0.45	0.50	54	73429	59	4	49	6	65
ASE_00196	RNaseP_arch links to Rfam database...	0.75	0.76	0.74	57	31549	26	2	18	6	18
ASE_00197	RNaseP_bact_a links to Rfam database...	0.62	0.59	0.66	85	89125	49	3	40	6	60
ASE_00203	RNaseP_bact_a links to Rfam database...	0.78	0.74	0.82	71	46578	22	4	12	6	25
ASE_00204	RNaseP_bact_b links to Rfam database...	0.57	0.54	0.61	60	67798	46	5	33	8	52
ASE_00205	RNaseP_arch links to Rfam database...	0.45	0.46	0.45	41	45964	60	7	44	9	49
ASE_00209	RNaseP_arch links to Rfam database...	0.56	0.51	0.61	45	42997	31	3	26	2	43
ASE_00210	RNaseP_arch links to Rfam database...	0.58	0.60	0.57	39	27192	31	7	23	1	26
ASE_00212	RNaseP_bact_a links to Rfam database...	0.68	0.64	0.71	95	93828	46	3	35	8	53
ASE_00213	RNaseP_arch links to Rfam database...	0.58	0.58	0.58	38	27196	30	5	22	3	28
ASE_00214	RNaseP_bact_a links to Rfam database...	0.80	0.78	0.82	80	56183	27	3	14	10	23
ASE_00215	RNaseP_bact_a links to Rfam database...	0.54	0.51	0.57	50	48429	39	4	33	2	49
ASE_00216	RNaseP_bact_a links to Rfam database...	0.58	0.59	0.58	48	39257	36	9	26	1	34
ASE_00217	RNaseP_bact_a links to Rfam database...	0.42	0.39	0.46	35	40394	47	2	39	6	55
ASE_00221	RNaseP_bact_a links to Rfam database...	0.66	0.60	0.72	70	64523	31	1	26	4	47
ASE_00222	RNaseP_arch links to Rfam database...	0.72	0.71	0.74	111	111950	46	7	33	6	46
ASE_00227	RNaseP_bact_a links to Rfam database...	0.31	0.29	0.34	39	78887	77	6	71	0	94
ASE_00228	RNaseP_bact_a links to Rfam database...	0.79	0.78	0.80	67	46887	20	8	9	3	19
ASE_00229	RNaseP_bact_a links to Rfam database...	0.67	0.64	0.71	56	42407	28	4	19	5	31
ASE_00231	RNaseP_bact_a links to Rfam database...	0.77	0.75	0.79	72	47804	20	3	16	1	24
ASE_00232	RNaseP_bact_a links to Rfam database...	0.64	0.64	0.64	54	38418	33	10	21	2	30
ASE_00234	RNaseP_bact_a links to Rfam database...	0.55	0.50	0.60	64	75360	47	3	39	5	65
ASE_00237	RNaseP_nuc links to Rfam database...	0.08	0.09	0.07	5	45683	79	14	51	14	51
ASE_00238	RNaseP_bact_a links to Rfam database...	0.68	0.62	0.75	71	64166	26	1	23	2	43
ASE_00240	RNaseP_bact_a links to Rfam database...	0.41	0.39	0.43	36	46581	51	1	47	3	57
ASE_00241	RNaseP_bact_a links to Rfam database...	0.79	0.74	0.85	64	43881	17	2	9	6	23
ASE_00242	RNaseP_bact_a links to Rfam database...	0.76	0.72	0.79	81	60973	24	6	15	3	31
ASE_00245	RNaseP_nuc links to Rfam database...	0.90	0.87	0.93	68	55205	38	0	5	33	10
ASE_00246	RNaseP_nuc links to Rfam database...	0.36	0.37	0.34	25	48132	70	12	36	22	42
ASE_00247	RNaseP_nuc links to Rfam database...	0.16	0.19	0.14	12	54201	94	19	53	22	52
ASE_00248	RNaseP_bact_a links to Rfam database...	0.62	0.58	0.67	66	62383	36	1	31	4	48
ASE_00250	RNaseP_bact_a links to Rfam database...	0.61	0.57	0.66	75	78889	45	2	37	6	56
ASE_00251	RNaseP_nuc links to Rfam database...	1.00	1.00	1.00	43	17723	22	0	0	22	0
ASE_00252	RNaseP_bact_a links to Rfam database...	0.74	0.70	0.80	117	115293	39	2	28	9	51
ASE_00254	RNaseP_bact_a links to Rfam database...	0.77	0.73	0.81	60	36782	20	5	9	6	22
ASE_00255	RNaseP_bact_a links to Rfam database...	0.64	0.62	0.67	80	74571	46	4	36	6	50
ASE_00257	RNaseP_bact_a links to Rfam database...	0.77	0.74	0.81	72	50951	21	2	15	4	25
ASE_00258	RNaseP_nuc links to Rfam database...	0.96	0.94	0.98	51	26744	11	0	1	10	3
ASE_00263	RNaseP_bact_a links to Rfam database...	0.56	0.56	0.57	67	70383	50	4	46	0	53
ASE_00264	RNaseP_nuc links to Rfam database...	0.43	0.43	0.43	43	49041	67	9	48	10	57
ASE_00267	RNaseP_bact_a links to Rfam database...	0.49	0.47	0.52	41	45071	44	3	35	6	47
ASE_00270	RNaseP_bact_a links to Rfam database...	0.72	0.70	0.75	89	72271	33	3	27	3	39
ASE_00274	RNaseP_bact_a links to Rfam database...	0.48	0.47	0.51	48	55516	49	6	41	2	55
ASE_00277	RNaseP_bact_a links to Rfam database...	0.61	0.59	0.63	54	48119	35	5	27	3	37
ASE_00279	RNaseP_bact_a links to Rfam database...	0.52	0.51	0.53	52	53202	48	8	39	1	49
ASE_00280	RNaseP_bact_a links to Rfam database...	0.61	0.58	0.64	57	51914	35	4	28	3	41
ASE_00281	RNaseP_bact_a links to Rfam database...	0.70	0.65	0.75	57	44475	26	1	18	7	31
ASE_00282	RNaseP_bact_a links to Rfam database...	0.49	0.47	0.51	60	77698	59	9	48	2	67
ASE_00283	RNaseP_bact_a links to Rfam database...	0.64	0.63	0.66	67	61674	41	4	31	6	40
ASE_00284	RNaseP_bact_a links to Rfam database...	0.65	0.63	0.67	68	58209	40	6	28	6	40
ASE_00285	RNaseP_bact_a links to Rfam database...	0.83	0.79	0.87	96	68896	23	3	11	9	26
ASE_00286	RNaseP_bact_a links to Rfam database...	0.73	0.70	0.77	64	46582	24	1	18	5	28
ASE_00287	RNaseP_bact_a links to Rfam database...	0.68	0.65	0.72	67	54853	32	3	23	6	36
ASE_00288	RNaseP_bact_a links to Rfam database...	0.61	0.55	0.69	51	45982	27	3	20	4	42
ASE_00289	RNaseP_bact_a links to Rfam database...	0.80	0.74	0.87	116	100891	24	2	16	6	41
ASE_00292	RNaseP_bact_a links to Rfam database...	0.59	0.53	0.66	73	81699	43	2	36	5	65
ASE_00294	RNaseP_bact_a links to Rfam database...	0.73	0.68	0.78	116	114333	36	3	29	4	55
ASE_00295	RNaseP_bact_a links to Rfam database...	0.66	0.62	0.70	81	73804	37	3	32	2	50
ASE_00296	RNaseP_bact_a links to Rfam database...	0.55	0.54	0.57	78	91670	61	5	53	3	67
ASE_00297	RNaseP_bact_a links to Rfam database...	0.68	0.67	0.68	66	52878	37	5	26	6	32
ASE_00298	RNaseP_bact_a links to Rfam database...	0.28	0.27	0.29	31	67422	79	7	68	4	82
ASE_00299	RNaseP_bact_a links to Rfam database...	0.51	0.51	0.52	51	49356	54	3	45	6	49
ASE_00303	RNaseP_nuc links to Rfam database...	0.69	0.69	0.68	66	67799	52	3	28	21	29
ASE_00305	RNaseP_bact_b links to Rfam database...	0.70	0.61	0.80	52	54550	20	0	13	7	33
ASE_00313	RNaseP_nuc links to Rfam database...	0.54	0.56	0.52	50	62384	69	9	38	22	39
ASE_00316	RNaseP_nuc links to Rfam database...	0.66	0.64	0.68	63	107788	83	5	24	54	35
ASE_00318	RNaseP_bact_b links to Rfam database...	0.63	0.60	0.66	71	80093	40	12	24	4	47
ASE_00321	RNaseP_bact_b links to Rfam database...	0.73	0.65	0.81	57	54545	20	0	13	7	31
ASE_00327	RNaseP_nuc links to Rfam database...	0.81	0.80	0.83	71	57205	34	3	12	19	18
ASE_00328	RNaseP_bact_b links to Rfam database...	0.63	0.59	0.67	66	72673	41	5	27	9	46
ASE_00329	RNaseP_nuc links to Rfam database...	0.81	0.83	0.80	52	40690	37	7	6	24	11
ASE_00330	RNaseP_nuc links to Rfam database...	0.78	0.78	0.78	70	56190	41	1	19	21	20
ASE_00332	RNaseP_bact_a links to Rfam database...	0.56	0.55	0.58	76	81678	60	2	54	4	62
ASE_00335	RNaseP_bact_b links to Rfam database...	0.62	0.57	0.68	66	75369	44	2	29	13	50
ASE_00337	RNaseP_nuc links to Rfam database...	0.52	0.54	0.51	38	39266	51	5	31	15	33
ASE_00338	RNaseP_nuc links to Rfam database...	0.68	0.66	0.71	65	66338	45	4	23	18	33
ASE_00339	RNaseP_bact_a links to Rfam database...	0.74	0.71	0.78	84	80092	36	0	24	12	35
ASE_00340	RNaseP_bact_a links to Rfam database...	0.47	0.45	0.49	38	45978	44	4	36	4	47
ASE_00342	RNaseP_bact_a links to Rfam database...	0.67	0.64	0.70	74	62376	33	4	27	2	41
ASE_00343	RNaseP_bact_a links to Rfam database...	0.70	0.65	0.75	73	83339	39	1	23	15	40
ASE_00346	RNaseP_arch links to Rfam database...	0.34	0.34	0.35	33	48111	67	4	57	6	64
ASE_00353	RNaseP_bact_a links to Rfam database...	0.77	0.75	0.78	80	57868	29	1	21	7	27
ASE_00359	RNaseP_arch links to Rfam database...	0.49	0.48	0.51	38	42703	44	3	34	7	42
ASE_00360	RNaseP_arch links to Rfam database...	0.31	0.31	0.32	20	29341	43	8	34	1	45
ASE_00361	RNaseP_bact_a links to Rfam database...	0.64	0.61	0.67	77	75351	42	8	30	4	50
ASE_00362	RNaseP_bact_a links to Rfam database...	0.60	0.59	0.60	54	48115	38	2	34	2	37
ASE_00363	RNaseP_bact_a links to Rfam database...	0.78	0.77	0.80	72	51270	25	1	17	7	22
ASE_00364	RNaseP_bact_a links to Rfam database...	0.74	0.71	0.77	75	54187	33	3	20	10	30
ASE_00366	RNaseP_bact_a links to Rfam database...	0.37	0.38	0.36	37	58550	68	7	59	2	61
ASE_00367	RNaseP_bact_a links to Rfam database...	0.50	0.50	0.50	43	42985	49	8	35	6	43
ASE_00369	RNaseP_bact_a links to Rfam database...	0.75	0.72	0.78	77	55846	28	1	21	6	30
ASE_00370	RNaseP_bact_a links to Rfam database...	0.63	0.63	0.62	53	41820	35	4	28	3	31
ASE_00372	RNaseP_bact_a links to Rfam database...	0.70	0.68	0.72	68	51908	33	4	23	6	32
ASE_00374	RNaseP_bact_a links to Rfam database...	0.74	0.73	0.74	64	44764	23	5	17	1	24
ASE_00375	RNaseP_bact_a links to Rfam database...	0.85	0.77	0.93	85	60287	12	1	5	6	25
ASE_00376	RNaseP_bact_a links to Rfam database...	0.61	0.60	0.63	63	56853	41	4	33	4	42
ASE_00377	RNaseP_bact_a links to Rfam database...	0.77	0.76	0.78	81	57526	29	4	19	6	26
ASE_00379	RNaseP_bact_a links to Rfam database...	0.60	0.58	0.63	52	45973	39	4	27	8	37
ASE_00380	RNaseP_bact_a links to Rfam database...	0.61	0.57	0.67	56	54862	34	7	21	6	43
ASE_00382	RNaseP_bact_a links to Rfam database...	0.58	0.56	0.59	47	41826	36	6	26	4	37
ASE_00383	RNaseP_bact_a links to Rfam database...	0.74	0.72	0.75	76	54514	32	3	22	7	29
ASE_00384	RNaseP_bact_a links to Rfam database...	0.78	0.76	0.80	70	48428	22	2	16	4	22
ASE_00385	RNaseP_bact_a links to Rfam database...	0.59	0.58	0.59	47	41826	33	5	27	1	34
ASE_00386	RNaseP_bact_a links to Rfam database...	0.67	0.66	0.68	63	50310	36	1	29	6	33
ASE_00387	RNaseP_bact_a links to Rfam database...	0.69	0.65	0.73	68	55852	27	1	24	2	36
ASE_00388	RNaseP_bact_a links to Rfam database...	0.72	0.67	0.78	60	45676	22	1	16	5	29
ASE_00390	RNaseP_bact_a links to Rfam database...	0.65	0.64	0.67	54	42114	37	3	24	10	31
ASE_00393	RNaseP_bact_a links to Rfam database...	0.72	0.68	0.77	63	47813	26	2	17	7	30
ASE_00394	RNaseP_bact_a links to Rfam database...	0.80	0.80	0.81	74	46880	20	4	13	3	19
ASE_00395	RNaseP_bact_a links to Rfam database...	0.68	0.68	0.69	57	41533	29	5	21	3	27
ASE_00396	RNaseP_bact_a links to Rfam database...	0.56	0.54	0.58	45	41538	34	2	31	1	38
ASE_00397	RNaseP_bact_a links to Rfam database...	0.64	0.64	0.65	67	54512	41	6	30	5	38
ASE_00398	RNaseP_bact_a links to Rfam database...	0.68	0.63	0.74	65	55857	30	1	22	7	39
ASE_00400	RNaseP_bact_a links to Rfam database...	0.66	0.63	0.70	67	57874	31	1	28	2	39
ASE_00401	RNaseP_bact_a links to Rfam database...	0.63	0.63	0.64	79	76904	46	7	38	1	47
ASE_00402	RNaseP_bact_a links to Rfam database...	0.78	0.74	0.83	63	42410	18	1	12	5	22
ASE_00403	RNaseP_bact_a links to Rfam database...	0.39	0.36	0.41	39	55850	61	3	53	5	68
ASE_00404	RNaseP_bact_a links to Rfam database...	0.54	0.53	0.55	45	42989	38	2	35	1	40
ASE_00406	RNaseP_bact_a links to Rfam database...	0.72	0.71	0.74	67	48737	29	6	18	5	27
ASE_00411	RNaseP_bact_a links to Rfam database...	0.56	0.53	0.59	47	49376	34	7	25	2	42
ASE_00412	RNaseP_bact_a links to Rfam database...	0.63	0.59	0.67	62	58218	40	4	27	9	43
ASE_00413	RNaseP_bact_a links to Rfam database...	0.49	0.48	0.50	39	44473	43	10	29	4	42
ASE_00414	RNaseP_bact_a links to Rfam database...	0.47	0.45	0.49	43	46272	52	1	44	7	52
ASE_00415	RNaseP_bact_a links to Rfam database...	0.54	0.52	0.56	54	54849	50	3	40	7	49
ASE_00416	RNaseP_bact_a links to Rfam database...	0.61	0.58	0.63	74	77304	51	5	38	8	53
ASE_00417	RNaseP_arch links to Rfam database...	0.47	0.47	0.47	47	54516	55	2	50	3	53
ASE_00418	RNaseP_arch links to Rfam database...	0.06	0.07	0.07	5	38706	72	5	65	2	70
ASE_00419	RNaseP_bact_a links to Rfam database...	0.77	0.77	0.78	79	54845	24	9	13	2	24
ASE_00420	RNaseP_nuc links to Rfam database...	0.79	0.79	0.78	50	43301	48	0	14	34	13
ASE_00422	RNaseP_bact_a links to Rfam database...	0.68	0.67	0.68	63	46879	34	5	24	5	31
ASE_00423	RNaseP_bact_a links to Rfam database...	0.67	0.66	0.68	72	56847	36	7	27	2	37
ASE_00426	RNaseP_bact_a links to Rfam database...	0.57	0.53	0.63	57	60984	35	7	27	1	51
ASE_00427	RNaseP_nuc links to Rfam database...	0.14	0.17	0.11	8	40684	76	26	37	13	38
ASE_00428	RNaseP_bact_a links to Rfam database...	0.67	0.62	0.73	78	76529	38	2	27	9	47
ASE_00430	RNaseP_bact_a links to Rfam database...	0.69	0.68	0.70	66	46877	35	5	23	7	31
ASE_00431	RNaseP_bact_a links to Rfam database...	0.54	0.51	0.58	48	46277	49	0	35	14	47
ASE_00434	RNaseP_bact_b links to Rfam database...	0.67	0.63	0.71	69	68168	42	3	25	14	41
ASE_00437	RNaseP_bact_a links to Rfam database...	0.46	0.41	0.52	55	79296	53	1	49	3	80
ASE_00438	RNaseP_bact_a links to Rfam database...	0.66	0.61	0.71	71	65966	32	2	27	3	45
ASE_00441	RNaseP_bact_a links to Rfam database...	0.82	0.76	0.89	85	64166	20	2	8	10	27
ASE_00443	RNaseP_nuc links to Rfam database...	0.98	0.98	0.98	49	26746	29	0	1	28	1
ASE_00447	RNaseP_bact_a links to Rfam database...	0.73	0.68	0.79	79	60278	27	0	21	6	37
ASE_00448	RNaseP_bact_a links to Rfam database...	0.40	0.38	0.42	42	64162	65	8	49	8	70
ASE_00451	RNaseP_bact_a links to Rfam database...	0.74	0.69	0.79	86	70767	24	2	21	1	39
ASE_00454	RNaseP_nuc links to Rfam database...	0.39	0.41	0.37	26	43294	60	11	34	15	37
CRW_00013	Intron_gpI links to Rfam database...	0.43	0.39	0.47	45	103644	80	11	40	29	70
CRW_00016	Intron_gpI links to Rfam database...	0.73	0.68	0.79	81	77319	37	0	21	16	39
CRW_00024	SSU_rRNA_archaea links to Rfam database...	0.77	0.77	0.78	351	1085153	140	12	85	43	107
CRW_00034	SSU_rRNA_bacteria links to Rfam database...	0.68	0.68	0.68	320	1141844	188	22	130	36	154
CRW_00048	SSU_rRNA_bacteria links to Rfam database...	0.60	0.57	0.64	268	1170795	174	25	127	22	202
CRW_00054	SSU_rRNA_bacteria links to Rfam database...	0.54	0.52	0.56	237	1107395	202	25	159	18	219
CRW_00059	SSU_rRNA_bacteria links to Rfam database...	0.64	0.60	0.67	286	1172318	164	20	122	22	187
CRW_00061	SSU_rRNA_bacteria links to Rfam database...	0.59	0.58	0.61	274	1181504	188	29	146	13	202
CRW_00068	SSU_rRNA_bacteria links to Rfam database...	0.51	0.51	0.53	231	1108865	226	32	177	17	226
CRW_00096	SSU_rRNA_bacteria links to Rfam database...	0.55	0.53	0.57	245	1178450	213	19	166	28	220
CRW_00140	SSU_rRNA_bacteria links to Rfam database...	0.56	0.52	0.61	243	1135878	175	14	143	18	220
CRW_00141	SSU_rRNA_bacteria links to Rfam database...	0.62	0.60	0.64	287	1201577	192	19	142	31	189
CRW_00150	SSU_rRNA_bacteria links to Rfam database...	0.55	0.51	0.59	237	1152519	185	22	143	20	229
CRW_00152	SSU_rRNA_bacteria links to Rfam database...	0.53	0.49	0.57	233	1180006	196	22	155	19	238
CRW_00166	SSU_rRNA_bacteria links to Rfam database...	0.62	0.59	0.64	277	1190763	182	19	137	26	191
CRW_00173	SSU_rRNA_bacteria links to Rfam database...	0.34	0.34	0.35	150	1082228	288	32	246	10	295
CRW_00177	SSU_rRNA_bacteria links to Rfam database...	0.50	0.48	0.52	228	1178444	227	20	188	19	245
CRW_00196	SSU_rRNA_bacteria links to Rfam database...	0.57	0.55	0.59	259	1207798	197	27	151	19	216
CRW_00230	SSU_rRNA_bacteria links to Rfam database...	0.54	0.52	0.56	250	1198476	220	27	173	20	228
CRW_00245	SSU_rRNA_bacteria links to Rfam database...	0.53	0.51	0.55	229	1105912	212	23	164	25	224
CRW_00248	SSU_rRNA_bacteria links to Rfam database...	0.64	0.62	0.66	301	1218683	200	21	136	43	183
CRW_00250	SSU_rRNA_bacteria links to Rfam database...	0.58	0.56	0.61	267	1198490	184	24	145	15	211
CRW_00256	SSU_rRNA_bacteria links to Rfam database...	0.47	0.44	0.50	206	1192327	232	26	181	25	262
CRW_00270	SSU_rRNA_bacteria links to Rfam database...	0.66	0.63	0.69	286	1111874	157	20	106	31	169
CRW_00271	SSU_rRNA_bacteria links to Rfam database...	0.51	0.48	0.53	221	1122337	215	30	163	22	241
CRW_00273	SSU_rRNA_bacteria links to Rfam database...	0.47	0.46	0.49	203	1085190	233	20	188	25	243
CRW_00275	SSU_rRNA_bacteria links to Rfam database...	0.61	0.59	0.63	271	1114843	186	19	138	29	186
CRW_00277	SSU_rRNA_bacteria links to Rfam database...	0.44	0.40	0.49	182	1110423	203	23	167	13	271
CRW_00278	SSU_rRNA_bacteria links to Rfam database...	0.44	0.42	0.47	190	1129849	240	28	189	23	260
CRW_00279	SSU_rRNA_bacteria links to Rfam database...	0.60	0.56	0.64	262	1180004	173	25	125	23	202
CRW_00280	SSU_rRNA_bacteria links to Rfam database...	0.55	0.51	0.60	232	1117873	173	15	140	18	221
CRW_00281	SSU_rRNA_bacteria links to Rfam database...	0.64	0.62	0.65	288	1144901	182	17	135	30	176
CRW_00283	SSU_rRNA_bacteria links to Rfam database...	0.41	0.38	0.45	162	1015668	217	29	166	22	270
CRW_00284	SSU_rRNA_bacteria links to Rfam database...	0.51	0.47	0.56	216	1131371	196	24	149	23	240
CRW_00285	SSU_rRNA_bacteria links to Rfam database...	0.66	0.63	0.68	289	1117836	159	19	116	24	169
CRW_00289	SSU_rRNA_bacteria links to Rfam database...	0.60	0.57	0.63	270	1189221	197	21	141	35	206
CRW_00292	SSU_rRNA_bacteria links to Rfam database...	0.38	0.36	0.40	165	1123842	258	35	208	15	296
CRW_00306	SSU_rRNA_eukarya links to Rfam database...	0.28	0.28	0.29	129	1445402	388	63	256	69	333
CRW_00366	SSU_rRNA_eukarya links to Rfam database...	0.33	0.33	0.33	157	1579284	361	57	255	49	325
CRW_00371	SSU_rRNA_eukarya links to Rfam database...	0.44	0.41	0.46	205	1611467	295	42	196	57	291
CRW_00379	SSU_rRNA_eukarya links to Rfam database...	0.43	0.42	0.44	223	2126443	372	38	249	85	311
CRW_00411	SSU_rRNA_eukarya links to Rfam database...	0.39	0.36	0.42	181	1615070	306	41	211	54	315
CRW_00414	SSU_rRNA_eukarya links to Rfam database...	0.36	0.37	0.36	181	1665721	382	54	269	59	314
CRW_00466	SSU_rRNA_bacteria links to Rfam database...	0.70	0.68	0.73	312	1116336	148	19	98	31	146
CRW_00589	SSU_rRNA_bacteria links to Rfam database...	0.33	0.30	0.36	134	1094090	257	24	212	21	311
CRW_00590	SSU_rRNA_bacteria links to Rfam database...	0.36	0.35	0.38	157	1119345	281	41	213	27	295
CRW_00591	SSU_rRNA_bacteria links to Rfam database...	0.62	0.60	0.65	268	1098489	182	28	118	36	178
CRW_00610	Intron_gpI links to Rfam database...	0.50	0.49	0.51	40	36237	41	9	29	3	41
CRW_00613	Intron_gpI links to Rfam database...	0.79	0.77	0.81	60	34906	22	1	13	8	18
CRW_00614	Intron_gpI links to Rfam database...	0.24	0.25	0.23	14	121709	121	7	41	73	43
CRW_00618	Intron_gpI links to Rfam database...	0.20	0.21	0.19	13	56213	75	8	46	21	48
CRW_00619	Intron_gpI links to Rfam database...	0.45	0.40	0.52	29	164969	110	5	22	83	44
CRW_00620	Intron_gpI links to Rfam database...	0.18	0.22	0.15	14	150884	136	23	54	59	49
CRW_00621	Intron_gpI links to Rfam database...	0.37	0.35	0.38	25	153116	137	6	34	97	46
CRW_00623	Intron_gpI links to Rfam database...	0.25	0.20	0.31	17	129740	100	5	33	62	66
CRW_00633	Intron_gpI links to Rfam database...	0.58	0.55	0.62	58	63453	37	8	27	2	48
CRW_00634	Intron_gpI links to Rfam database...	0.58	0.59	0.57	55	64524	43	12	29	2	39
CRW_00670	Intron_gpI links to Rfam database...	0.76	0.71	0.83	85	70022	19	0	18	1	35
CRW_00671	Intron_gpI links to Rfam database...	0.73	0.70	0.77	82	62728	31	1	24	6	35
CRW_00672	Intron_gpI links to Rfam database...	0.53	0.52	0.55	58	72284	55	8	40	7	53
CRW_00674	Intron_gpI links to Rfam database...	0.70	0.66	0.74	82	83325	34	5	24	5	42
CRW_00676	Intron_gpI links to Rfam database...	0.42	0.44	0.40	51	93400	81	20	57	4	64
CRW_00692	Intron_gpI links to Rfam database...	0.45	0.44	0.47	40	68549	53	16	30	7	50
CRW_00759	SSU_rRNA_eukarya links to Rfam database...	0.31	0.30	0.32	145	1636697	372	51	252	69	336
CRW_00763	SSU_rRNA_bacteria links to Rfam database...	0.38	0.32	0.44	144	1215694	231	27	155	49	302
CRW_00772	SSU_rRNA_bacteria links to Rfam database...	0.40	0.37	0.44	148	945666	215	18	168	29	256
CRW_00778	SSU_rRNA_bacteria links to Rfam database...	0.52	0.45	0.59	174	1201730	163	16	105	42	210
CRW_00789	SSU_rRNA_bacteria links to Rfam database...	0.48	0.44	0.53	196	1137416	209	14	160	35	251
CRW_00795	SSU_rRNA_bacteria links to Rfam database...	0.35	0.33	0.38	131	1152575	263	22	193	48	263
CRW_00800	SSU_rRNA_eukarya links to Rfam database...	0.57	0.54	0.60	253	1401550	230	21	151	58	217
CRW_00849	SSU_rRNA_bacteria links to Rfam database...	0.57	0.56	0.57	265	1117797	226	19	179	28	205
CRW_00997	SSU_rRNA_bacteria links to Rfam database...	0.62	0.60	0.64	280	1135838	187	19	141	27	184
CRW_01153	SSU_rRNA_eukarya links to Rfam database...	0.39	0.39	0.40	194	1606043	347	52	239	56	309
CRW_01171	SSU_rRNA_eukarya links to Rfam database...	0.45	0.44	0.47	221	1593534	302	49	201	52	285
CRW_01343	SSU_rRNA_archaea links to Rfam database...	0.46	0.44	0.48	189	977509	217	30	173	14	245
PDB_00005	Tymo_tRNA-like links to Rfam database...	0.88	0.79	1.00	11	935	0	0	0	0	3
PDB_00012	mir-TAR links to Rfam database...	1.00	1.00	1.00	7	399	3	0	0	3	0
PDB_00213	Gammaretro_CES links to Rfam database...	0.94	0.88	1.00	36	5014	0	0	0	0	5
PDB_00553	mir-TAR links to Rfam database...	1.00	1.00	1.00	11	454	0	0	0	0	0
PDB_00703	SSU_rRNA_bacteria links to Rfam database...	0.53	0.50	0.56	246	1073403	229	19	177	33	249
PDB_00716	HDV_ribozyme links to Rfam database...	0.33	0.30	0.37	7	2682	13	0	12	1	16
PDB_00741	Entero_5_CRE links to Rfam database...	0.87	0.76	1.00	13	690	0	0	0	0	4
PDB_00810	s2m links to Rfam database...	0.77	0.71	0.86	12	1067	3	0	2	1	5
PDB_00827	Intron_gpI links to Rfam database...	0.77	0.65	0.90	53	26969	8	0	6	2	28
PDB_00828	Purine links to Rfam database...	0.88	0.78	1.00	21	2464	1	0	0	1	6
PDB_00829	Purine links to Rfam database...	0.84	0.75	0.95	18	2259	1	0	1	0	6
PDB_00854	SSU_rRNA_bacteria links to Rfam database...	0.50	0.49	0.52	264	1500266	296	25	223	48	271
PDB_00876	HIV_FE links to Rfam database...	0.92	0.90	0.95	18	971	1	0	1	0	2
PDB_00919	RNaseP_bact_a links to Rfam database...	0.56	0.52	0.59	54	44162	41	5	32	4	49
PDB_01001	tRNA links to Rfam database...	0.49	0.56	0.43	10	2122	13	3	10	0	8
PDB_01020	Purine links to Rfam database...	0.81	0.74	0.89	17	2259	3	1	1	1	6
PDB_01050	UnaL2 links to Rfam database...	0.96	0.92	1.00	12	618	2	0	0	2	1
PDB_01051	Telomerase-cil links to Rfam database...	0.88	0.85	0.92	11	891	5	0	1	4	2
PDB_01073	SAM links to Rfam database...	0.86	0.74	1.00	25	4346	1	0	0	1	9
PDB_01088	SSU_rRNA_bacteria links to Rfam database...	0.46	0.43	0.49	236	1470988	271	34	212	25	311
PDB_01092	glmS links to Rfam database...	0.70	0.65	0.76	34	10108	14	2	9	3	18
PDB_01103	SSU_rRNA_bacteria links to Rfam database...	0.55	0.54	0.56	301	1605989	279	31	207	41	261
PDB_01105	SSU_rRNA_bacteria links to Rfam database...	0.58	0.56	0.60	303	1433467	242	16	185	41	237
PDB_01114	TPP links to Rfam database...	0.71	0.63	0.81	17	2829	4	0	4	0	10
PDB_01120	SSU_rRNA_bacteria links to Rfam database...	0.49	0.44	0.55	232	1204703	216	20	173	23	295
PDB_01152	HIV_FS2 links to Rfam database...	0.96	0.93	1.00	13	548	0	0	0	0	1
PDB_01236	ykoK links to Rfam database...	0.67	0.65	0.69	35	11577	19	1	15	3	19
PDB_01273	SSU_rRNA_bacteria links to Rfam database...	0.49	0.47	0.51	232	1117807	258	16	205	37	259
RFA_00389	Hammerhead_3 links to Rfam database...	0.93	0.93	0.93	14	1416	4	0	1	3	1
RFA_00390	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	3	0	0	3	0
RFA_00391	Hammerhead_3 links to Rfam database...	0.62	0.60	0.64	9	1417	7	2	3	2	6
RFA_00396	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	2	0	0	2	1
RFA_00402	Hammerhead_3 links to Rfam database...	0.83	0.80	0.86	12	1417	3	0	2	1	3
RFA_00409	Hammerhead_3 links to Rfam database...	0.62	0.60	0.64	9	1417	6	1	4	1	6
RFA_00416	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1470	3	0	0	3	0
RFA_00425	Hammerhead_3 links to Rfam database...	0.93	0.87	1.00	13	1640	5	0	0	5	2
RFA_00427	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1471	4	0	0	4	1
RFA_00433	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00434	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00436	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00440	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1470	3	0	0	3	0
RFA_00442	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00444	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1525	2	0	0	2	0
RFA_00446	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1471	5	0	0	5	1
RFA_00449	Hammerhead_3 links to Rfam database...	0.73	0.60	0.90	9	1475	3	0	1	2	6
RFA_00582	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	5980	21	0	0	21	0
RFA_00583	Y_RNA links to Rfam database...	0.93	0.93	0.93	14	4935	6	0	1	5	1
RFA_00584	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	2911	15	0	0	15	0
RFA_00585	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4836	3	0	0	3	0
RFA_00586	Y_RNA links to Rfam database...	0.97	0.93	1.00	14	3902	10	0	0	10	1
RFA_00587	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4836	10	0	0	10	0
RFA_00588	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4545	15	0	0	15	0
RFA_00589	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4356	18	0	0	18	0
RFA_00594	Y_RNA links to Rfam database...	0.97	0.93	1.00	14	2761	10	0	0	10	1
RFA_00596	Y_RNA links to Rfam database...	0.00	0.00	0.00	0	5984	20	5	6	9	15
RFA_00597	Telomerase-vert links to Rfam database...	0.60	0.61	0.59	67	97789	69	16	31	22	42
RFA_00598	Telomerase-vert links to Rfam database...	0.47	0.47	0.48	47	84569	79	6	44	29	54
RFA_00599	Telomerase-vert links to Rfam database...	0.71	0.73	0.70	81	101359	59	10	25	24	30
RFA_00600	Telomerase-vert links to Rfam database...	0.67	0.72	0.62	72	120178	86	21	24	41	28
RFA_00601	Telomerase-vert links to Rfam database...	0.33	0.36	0.30	41	99097	108	37	60	11	73
RFA_00602	Telomerase-vert links to Rfam database...	0.63	0.67	0.58	78	101341	68	25	31	12	38
RFA_00603	Telomerase-cil links to Rfam database...	0.73	0.71	0.76	25	13497	8	4	4	0	10
RFA_00604	Telomerase-cil links to Rfam database...	0.71	0.74	0.68	26	13492	26	2	10	14	9
RFA_00605	Telomerase-cil links to Rfam database...	0.35	0.34	0.36	12	15192	35	2	19	14	23
RFA_00606	Telomerase-cil links to Rfam database...	0.53	0.51	0.54	20	21284	25	10	7	8	19
RFA_00607	Telomerase-cil links to Rfam database...	0.87	0.81	0.94	29	17735	11	0	2	9	7
RFA_00609	Telomerase-cil links to Rfam database...	0.76	0.78	0.74	29	17916	27	2	8	17	8
RFA_00610	Telomerase-cil links to Rfam database...	0.90	0.86	0.94	32	17171	20	0	2	18	5
RFA_00611	Telomerase-cil links to Rfam database...	0.82	0.74	0.90	26	13012	6	0	3	3	9
RFA_00613	Telomerase-cil links to Rfam database...	0.60	0.51	0.69	18	12854	9	3	5	1	17
RFA_00615	Telomerase-cil links to Rfam database...	0.63	0.57	0.69	20	13337	9	4	5	0	15
RFA_00620	Telomerase-cil links to Rfam database...	0.71	0.64	0.78	25	21913	29	0	7	22	14
RFA_00621	RNase_MRP links to Rfam database...	0.51	0.51	0.51	39	46284	58	2	35	21	37
RFA_00623	RNase_MRP links to Rfam database...	0.61	0.60	0.61	47	43879	46	1	29	16	31
RFA_00624	RNase_MRP links to Rfam database...	0.44	0.48	0.40	29	30063	49	9	34	6	32
RFA_00626	rne5 links to Rfam database...	0.91	0.87	0.94	76	56535	26	1	4	21	11
RFA_00627	rne5 links to Rfam database...	0.86	0.83	0.89	72	56872	28	0	9	19	15
RFA_00628	rne5 links to Rfam database...	0.91	0.88	0.94	76	57210	25	0	5	20	10
RFA_00630	rne5 links to Rfam database...	0.77	0.77	0.77	67	56866	34	6	14	14	20
RFA_00632	HDV_ribozyme links to Rfam database...	0.38	0.39	0.37	11	4065	19	0	19	0	17
RFA_00636	HDV_ribozyme links to Rfam database...	0.60	0.64	0.56	18	3973	14	4	10	0	10
RFA_00639	7SK links to Rfam database...	0.60	0.59	0.61	51	54532	47	5	27	15	36
RFA_00642	Vimentin3 links to Rfam database...	0.00	0.00	0.00	0	2915	11	2	9	0	18
RFA_00643	Vimentin3 links to Rfam database...	-0.01	0.00	0.00	0	2202	9	1	8	0	18
RFA_00644	Vimentin3 links to Rfam database...	0.00	0.00	0.00	0	2692	9	1	8	0	18
RFA_00645	Vimentin3 links to Rfam database...	-0.01	0.00	0.00	0	2402	13	3	10	0	18
RFA_00649	Vimentin3 links to Rfam database...	0.26	0.22	0.31	4	2132	9	6	3	0	14
RFA_00651	Vimentin3 links to Rfam database...	0.40	0.33	0.50	6	2068	6	1	5	0	12
RFA_00653	Vimentin3 links to Rfam database...	-0.01	0.00	0.00	0	2133	12	2	10	0	18
RFA_00654	Vimentin3 links to Rfam database...	-0.01	0.00	0.00	0	2400	15	2	13	0	18
RFA_00658	Hammerhead_1 links to Rfam database...	0.59	0.50	0.70	7	1118	5	0	3	2	7
RFA_00659	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	1120	10	1	7	2	14
RFA_00664	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	980	11	0	10	1	14
RFA_00667	Hammerhead_1 links to Rfam database...	0.29	0.29	0.31	4	977	10	1	8	1	10
RFA_00668	Hammerhead_1 links to Rfam database...	0.53	0.43	0.67	6	981	3	0	3	0	8
RFA_00672	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	897	6	0	6	0	13
RFA_00673	Hammerhead_1 links to Rfam database...	0.42	0.36	0.50	5	1118	6	0	5	1	9
RFA_00674	Hammerhead_1 links to Rfam database...	0.96	0.93	1.00	13	1115	1	0	0	1	1
RFA_00675	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	980	11	0	10	1	14
RFA_00677	Hammerhead_1 links to Rfam database...	0.59	0.57	0.62	8	977	7	0	5	2	6
RFA_00678	Hammerhead_1 links to Rfam database...	0.53	0.29	1.00	4	942	0	0	0	0	10
RFA_00680	Hammerhead_1 links to Rfam database...	0.74	0.71	0.77	10	1115	6	0	3	3	4
RFA_00684	Hammerhead_1 links to Rfam database...	0.66	0.64	0.69	9	977	5	0	4	1	5
RFA_00685	Hammerhead_1 links to Rfam database...	0.44	0.36	0.56	5	981	4	0	4	0	9
RFA_00695	Hammerhead_1 links to Rfam database...	0.44	0.36	0.56	5	7012	29	1	3	25	9
RFA_00703	Hammerhead_1 links to Rfam database...	0.67	0.64	0.69	9	4265	19	1	3	15	5
RFA_00704	Hammerhead_1 links to Rfam database...	0.32	0.21	0.50	3	984	5	0	3	2	11
RFA_00705	Hammerhead_1 links to Rfam database...	0.74	0.71	0.77	10	1022	4	0	3	1	4
RFA_00706	Hammerhead_1 links to Rfam database...	0.37	0.29	0.50	4	1027	4	0	4	0	10
RFA_00707	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	1027	8	1	7	0	14
RFA_00708	Hammerhead_1 links to Rfam database...	0.40	0.29	0.57	4	1028	3	0	3	0	10
RFA_00709	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	981	10	0	9	1	14
RFA_00710	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	979	11	0	11	0	14
RFA_00711	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	1026	9	0	9	0	14
RFA_00715	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	936	10	0	10	0	14
RFA_00716	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	937	9	0	9	0	14
RFA_00717	Hammerhead_1 links to Rfam database...	0.66	0.64	0.69	9	890	4	0	4	0	5
RFA_00730	s2m links to Rfam database...	0.75	0.75	0.75	9	891	5	0	3	2	3
RFA_00731	s2m links to Rfam database...	0.83	0.83	0.83	10	891	4	0	2	2	2
RFA_00733	s2m links to Rfam database...	0.83	0.83	0.83	10	891	4	0	2	2	2
RFA_00734	s2m links to Rfam database...	0.83	0.83	0.83	10	891	5	0	2	3	2
RFA_00736	s2m links to Rfam database...	0.83	0.83	0.83	10	891	4	0	2	2	2
RFA_00737	s2m links to Rfam database...	0.83	0.83	0.83	10	891	4	0	2	2	2
RFA_00745	s2m links to Rfam database...	0.66	0.67	0.67	8	934	6	1	3	2	4
RFA_00749	s2m links to Rfam database...	0.83	0.83	0.83	10	891	4	0	2	2	2
RFA_00758	s2m links to Rfam database...	0.60	0.58	0.64	7	892	5	1	3	1	5
RFA_00762	s2m links to Rfam database...	0.64	0.67	0.62	8	890	6	1	4	1	4
RFA_00763	s2m links to Rfam database...	0.83	0.83	0.83	10	891	4	0	2	2	2
RFA_00764	s2m links to Rfam database...	0.83	0.83	0.83	10	891	4	0	2	2	2
RFA_00765	s2m links to Rfam database...	0.83	0.83	0.83	10	891	4	0	2	2	2
RFA_00767	Corona_pk3 links to Rfam database...	0.74	0.56	1.00	10	1881	2	0	0	2	8
RFA_00768	Corona_pk3 links to Rfam database...	0.45	0.44	0.47	8	1874	9	1	8	0	10
RFA_00769	Corona_pk3 links to Rfam database...	0.54	0.56	0.53	10	1934	9	4	5	0	8
RFA_00770	Corona_pk3 links to Rfam database...	0.68	0.56	0.83	10	2004	5	0	2	3	8
RFA_00773	Corona_pk3 links to Rfam database...	0.71	0.56	0.91	10	1942	4	1	0	3	8
RFA_00779	Corona_pk3 links to Rfam database...	0.68	0.56	0.83	10	1941	2	0	2	0	8
RFA_00781	Gammaretro_CES links to Rfam database...	0.98	0.97	1.00	31	5019	2	0	0	2	1
RFA_00786	Gammaretro_CES links to Rfam database...	0.48	0.44	0.54	14	5024	14	1	11	2	18
RFA_00791	Gammaretro_CES links to Rfam database...	0.89	0.88	0.90	28	5120	6	2	1	3	4
RFA_00792	Gammaretro_CES links to Rfam database...	0.95	0.94	0.97	30	5019	3	0	1	2	2
RFA_00801	Gammaretro_CES links to Rfam database...	0.81	0.78	0.83	25	5020	8	0	5	3	7
RFA_00805	RNAIII links to Rfam database...	0.83	0.74	0.93	111	133266	19	1	8	10	39
RFA_00808	RydC links to Rfam database...	0.68	0.56	0.82	9	2005	2	0	2	0	7
RFA_00809	RydC links to Rfam database...	0.40	0.38	0.43	6	2131	8	0	8	0	10
RFA_00814	R2_retro_el links to Rfam database...	0.79	0.78	0.80	32	25160	19	1	7	11	9
RFA_00815	R2_retro_el links to Rfam database...	0.59	0.61	0.57	25	24487	35	2	17	16	16
RFA_00816	R2_retro_el links to Rfam database...	0.72	0.73	0.71	30	23178	20	8	4	8	11
RFA_00817	R2_retro_el links to Rfam database...	0.11	0.12	0.10	5	21893	47	12	35	0	36
RFA_00818	R2_retro_el links to Rfam database...	0.57	0.61	0.53	25	20254	32	11	11	10	16
RFA_00819	R2_retro_el links to Rfam database...	0.46	0.46	0.45	19	27924	47	3	20	24	22
RFA_00820	bicoid_3 links to Rfam database...	0.95	0.94	0.95	151	151366	28	0	8	20	9
RFA_00830	bicoid_3 links to Rfam database...	0.57	0.52	0.62	80	152499	100	2	47	51	74
SPR_00020	tRNA links to Rfam database...	0.82	0.80	0.84	16	2682	6	0	3	3	4
SPR_00023	tRNA links to Rfam database...	0.47	0.52	0.42	11	2824	15	4	11	0	10
SPR_00137	tRNA links to Rfam database...	0.84	0.86	0.82	18	2904	10	0	4	6	3
SPR_00273	tRNA links to Rfam database...	0.52	0.57	0.48	12	2825	13	2	11	0	9
SPR_00277	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	1	0	0	1	0
SPR_00394	tRNA links to Rfam database...	0.56	0.52	0.61	11	3637	11	5	2	4	10
SPR_00402	tRNA links to Rfam database...	0.60	0.48	0.77	10	2543	3	0	3	0	11
SPR_00721	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	2	0	0	2	0
SPR_00816	tRNA links to Rfam database...	0.31	0.35	0.28	7	3461	21	5	13	3	13
SPR_01157	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	4	0	0	4	0
SRP_00001	Bacteria_large_SRP links to Rfam database...	0.94	0.95	0.93	38	6745	4	1	2	1	2
SRP_00002	Metazoa_SRP links to Rfam database...	0.89	0.90	0.88	92	45046	14	4	8	2	10
SRP_00006	Metazoa_SRP links to Rfam database...	0.97	0.96	0.97	97	45653	11	0	3	8	4
SRP_00008	Bacteria_small_SRP links to Rfam database...	1.00	1.00	1.00	25	2901	0	0	0	0	0
SRP_00009	Plant_SRP links to Rfam database...	0.54	0.55	0.53	56	46560	54	8	41	5	46
SRP_00011	Plant_SRP links to Rfam database...	0.38	0.38	0.39	39	46260	62	5	56	1	65
SRP_00012	Plant_SRP links to Rfam database...	0.68	0.67	0.69	68	46261	32	7	24	1	33
SRP_00015	Plant_SRP links to Rfam database...	0.78	0.77	0.80	76	46265	26	2	17	7	23
SRP_00016	Archaea_SRP links to Rfam database...	0.93	0.93	0.94	101	47787	10	1	6	3	8
SRP_00018	Fungi_SRP links to Rfam database...	0.62	0.64	0.60	52	38417	44	7	27	10	29
SRP_00019	Fungi_SRP links to Rfam database...	0.38	0.35	0.41	32	35967	53	6	41	6	59
SRP_00020	Bacteria_small_SRP links to Rfam database...	0.77	0.79	0.76	26	5531	8	1	7	0	7
SRP_00024	Bacteria_large_SRP links to Rfam database...	0.44	0.44	0.44	38	37588	49	8	41	0	49
SRP_00026	Bacteria_large_SRP links to Rfam database...	0.70	0.70	0.69	62	36766	34	5	23	6	26
SRP_00027	Bacteria_large_SRP links to Rfam database...	0.68	0.67	0.70	58	37045	27	0	25	2	29
SRP_00030	Bacteria_large_SRP links to Rfam database...	0.78	0.78	0.78	69	36767	22	3	17	2	19
SRP_00031	Bacteria_large_SRP links to Rfam database...	0.63	0.65	0.61	58	36220	42	5	32	5	31
SRP_00037	Bacteria_large_SRP links to Rfam database...	0.63	0.64	0.61	56	36493	38	5	31	2	31
SRP_00038	Bacteria_small_SRP links to Rfam database...	0.05	0.06	0.06	2	5017	31	2	29	0	31
SRP_00040	Bacteria_small_SRP links to Rfam database...	0.70	0.74	0.66	23	5530	15	1	11	3	8
SRP_00042	Bacteria_small_SRP links to Rfam database...	0.56	0.60	0.54	15	3977	15	1	12	2	10
SRP_00043	Bacteria_small_SRP links to Rfam database...	0.48	0.48	0.48	14	5021	18	3	12	3	15
SRP_00044	Bacteria_small_SRP links to Rfam database...	0.89	0.91	0.88	29	6072	6	1	3	2	3
SRP_00046	Bacteria_small_SRP links to Rfam database...	0.97	0.97	0.97	31	4721	3	0	1	2	1
SRP_00050	Metazoa_SRP links to Rfam database...	0.92	0.91	0.94	90	44754	9	1	5	3	9
SRP_00051	Bacteria_small_SRP links to Rfam database...	0.31	0.33	0.30	10	5427	25	5	18	2	20
SRP_00053	Metazoa_SRP links to Rfam database...	0.86	0.83	0.89	78	45062	20	0	10	10	16
SRP_00054	Bacteria_small_SRP links to Rfam database...	0.25	0.25	0.26	8	5534	23	3	20	0	24
SRP_00056	Bacteria_small_SRP links to Rfam database...	0.75	0.76	0.74	28	6403	10	1	9	0	9
SRP_00057	Bacteria_small_SRP links to Rfam database...	0.78	0.80	0.76	28	6291	11	2	7	2	7
SRP_00058	Bacteria_small_SRP links to Rfam database...	0.87	0.88	0.86	30	5743	9	1	4	4	4
SRP_00060	Metazoa_SRP links to Rfam database...	0.92	0.92	0.93	92	44452	12	1	6	5	8
SRP_00061	Metazoa_SRP links to Rfam database...	0.91	0.90	0.93	90	44753	16	0	7	9	10
SRP_00066	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	45352	99	10	89	0	100
SRP_00067	Bacteria_small_SRP links to Rfam database...	0.46	0.45	0.49	17	5743	18	4	14	0	21
SRP_00069	Fungi_SRP links to Rfam database...	0.59	0.58	0.61	49	34373	33	2	29	2	36
SRP_00070	Fungi_SRP links to Rfam database...	0.35	0.39	0.31	47	126604	116	33	72	11	74
SRP_00072	Bacteria_small_SRP links to Rfam database...	0.30	0.31	0.29	9	6297	23	1	21	1	20
SRP_00073	Fungi_SRP links to Rfam database...	0.62	0.63	0.61	45	38986	46	6	23	17	26
SRP_00074	Bacteria_small_SRP links to Rfam database...	0.16	0.17	0.15	5	6522	32	4	24	4	24
SRP_00075	Bacteria_small_SRP links to Rfam database...	0.58	0.59	0.57	20	5530	17	2	13	2	14
SRP_00077	Bacteria_small_SRP links to Rfam database...	0.36	0.38	0.35	14	6630	26	3	23	0	23
SRP_00079	Plant_SRP links to Rfam database...	0.62	0.63	0.63	55	41817	43	3	30	10	33
SRP_00081	Bacteria_small_SRP links to Rfam database...	0.68	0.74	0.62	23	5528	14	1	13	0	8
SRP_00084	Bacteria_small_SRP links to Rfam database...	0.78	0.79	0.77	27	5425	8	1	7	0	7
SRP_00085	Plant_SRP links to Rfam database...	0.64	0.62	0.65	63	45354	38	5	29	4	38
SRP_00086	Metazoa_SRP links to Rfam database...	0.73	0.73	0.74	73	44154	29	1	25	3	27
SRP_00087	Fungi_SRP links to Rfam database...	0.19	0.22	0.16	13	37321	74	21	46	7	45
SRP_00088	Bacteria_large_SRP links to Rfam database...	0.70	0.71	0.69	63	34100	29	4	24	1	26
SRP_00089	Bacteria_large_SRP links to Rfam database...	0.92	0.92	0.92	83	35688	7	1	6	0	7
SRP_00090	Bacteria_large_SRP links to Rfam database...	0.84	0.84	0.84	76	35420	20	0	15	5	14
SRP_00091	Fungi_SRP links to Rfam database...	0.70	0.73	0.68	69	52874	39	4	28	7	26
SRP_00094	Bacteria_small_SRP links to Rfam database...	0.84	0.88	0.81	21	4069	7	1	4	2	3
SRP_00095	Bacteria_small_SRP links to Rfam database...	0.50	0.52	0.48	13	3978	14	3	11	0	12
SRP_00098	Bacteria_small_SRP links to Rfam database...	0.75	0.78	0.73	29	6401	13	1	10	2	8
SRP_00099	Plant_SRP links to Rfam database...	0.62	0.62	0.62	59	44755	37	7	29	1	36
SRP_00102	Metazoa_SRP links to Rfam database...	0.75	0.75	0.75	76	44450	26	1	24	1	25
SRP_00103	Metazoa_SRP links to Rfam database...	0.53	0.53	0.52	54	45348	51	4	45	2	48
SRP_00104	Fungi_SRP links to Rfam database...	0.33	0.36	0.30	25	34370	61	9	49	3	44
SRP_00105	Bacteria_small_SRP links to Rfam database...	0.15	0.15	0.16	5	5534	26	2	24	0	29
SRP_00106	Bacteria_large_SRP links to Rfam database...	0.44	0.52	0.37	13	5218	25	9	13	3	12
SRP_00107	Bacteria_small_SRP links to Rfam database...	0.12	0.16	0.11	3	3627	27	9	16	2	16
SRP_00117	Metazoa_SRP links to Rfam database...	0.81	0.76	0.87	78	45361	16	0	12	4	24
SRP_00121	Bacteria_small_SRP links to Rfam database...	0.80	0.80	0.80	20	4253	6	0	5	1	5
SRP_00123	Metazoa_SRP links to Rfam database...	0.86	0.86	0.86	78	36494	16	3	10	3	13
SRP_00124	Metazoa_SRP links to Rfam database...	0.63	0.62	0.63	53	37044	38	3	28	7	32
SRP_00127	Fungi_SRP links to Rfam database...	0.69	0.71	0.67	84	72264	48	10	32	6	35
SRP_00128	Bacteria_small_SRP links to Rfam database...	0.76	0.81	0.73	29	6746	14	1	10	3	7
SRP_00130	Archaea_SRP links to Rfam database...	0.69	0.70	0.67	68	49669	38	4	29	5	29
SRP_00132	Bacteria_small_SRP links to Rfam database...	0.69	0.72	0.66	21	4819	14	0	11	3	8
SRP_00134	Bacteria_large_SRP links to Rfam database...	0.64	0.69	0.59	20	5961	19	3	11	5	9
SRP_00136	Fungi_SRP links to Rfam database...	0.40	0.45	0.35	32	44162	68	15	44	9	39
SRP_00137	Bacteria_small_SRP links to Rfam database...	0.74	0.84	0.66	21	4154	13	4	7	2	4
SRP_00141	Bacteria_small_SRP links to Rfam database...	0.73	0.71	0.76	29	6290	10	1	8	1	12
SRP_00142	Archaea_SRP links to Rfam database...	0.54	0.55	0.53	51	45959	48	5	41	2	42
SRP_00143	Archaea_SRP links to Rfam database...	0.74	0.75	0.74	76	49667	35	1	26	8	25
SRP_00144	Archaea_SRP links to Rfam database...	0.72	0.71	0.72	67	46572	34	2	24	8	27
SRP_00145	Bacteria_small_SRP links to Rfam database...	0.96	0.98	0.95	39	6287	2	1	1	0	1
SRP_00146	Bacteria_small_SRP links to Rfam database...	0.82	0.83	0.81	30	5216	8	1	6	1	6
SRP_00148	Fungi_SRP links to Rfam database...	0.47	0.49	0.46	43	49992	62	4	47	11	44
SRP_00152	Plant_SRP links to Rfam database...	0.52	0.51	0.52	53	45651	49	10	39	0	50
SRP_00153	Plant_SRP links to Rfam database...	0.74	0.75	0.73	80	46862	31	7	22	2	27
SRP_00157	Fungi_SRP links to Rfam database...	0.37	0.42	0.33	30	44162	70	15	46	9	42
SRP_00158	Fungi_SRP links to Rfam database...	0.37	0.43	0.32	50	124095	119	41	65	13	65
SRP_00160	Fungi_SRP links to Rfam database...	0.38	0.37	0.40	48	86199	73	5	68	0	82
SRP_00161	Bacteria_small_SRP links to Rfam database...	0.86	0.86	0.86	19	2828	3	0	3	0	3
SRP_00162	Bacteria_small_SRP links to Rfam database...	0.89	0.91	0.88	21	2902	5	0	3	2	2
SRP_00163	Bacteria_small_SRP links to Rfam database...	0.88	0.88	0.88	23	3460	3	0	3	0	3
SRP_00164	Bacteria_small_SRP links to Rfam database...	0.38	0.40	0.37	14	6865	24	3	21	0	21
SRP_00170	Bacteria_small_SRP links to Rfam database...	0.78	0.80	0.77	20	4069	7	1	5	1	5
SRP_00171	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	45365	86	13	73	0	88
SRP_00173	Bacteria_large_SRP links to Rfam database...	0.78	0.79	0.77	71	38134	27	3	18	6	19
SRP_00174	Bacteria_large_SRP links to Rfam database...	0.76	0.76	0.76	65	38695	25	6	15	4	21
SRP_00175	Fungi_SRP links to Rfam database...	0.33	0.33	0.34	28	44468	60	9	46	5	56
SRP_00178	Plant_SRP links to Rfam database...	0.77	0.76	0.77	78	45652	26	7	16	3	24
SRP_00179	Plant_SRP links to Rfam database...	0.80	0.79	0.81	83	45954	23	5	14	4	22
SRP_00181	Plant_SRP links to Rfam database...	0.53	0.48	0.58	49	45972	36	5	30	1	53
SRP_00182	Plant_SRP links to Rfam database...	0.58	0.58	0.58	59	45955	45	10	32	3	42
SRP_00184	Plant_SRP links to Rfam database...	0.65	0.64	0.67	64	45960	37	6	26	5	36
SRP_00188	Plant_SRP links to Rfam database...	0.21	0.22	0.21	17	31045	63	8	55	0	62
SRP_00194	Bacteria_small_SRP links to Rfam database...	0.77	0.81	0.74	17	3217	11	0	6	5	4
SRP_00197	Archaea_SRP links to Rfam database...	0.24	0.22	0.26	22	49370	63	10	53	0	79
SRP_00198	Archaea_SRP links to Rfam database...	0.48	0.49	0.48	50	50936	55	2	52	1	53
SRP_00199	Archaea_SRP links to Rfam database...	0.61	0.60	0.62	63	50939	42	3	35	4	42
SRP_00200	Bacteria_small_SRP links to Rfam database...	0.79	0.81	0.78	29	6866	10	1	7	2	7
SRP_00201	Archaea_SRP links to Rfam database...	0.85	0.85	0.85	94	47784	20	5	12	3	17
SRP_00202	Archaea_SRP links to Rfam database...	0.89	0.89	0.89	104	54168	16	1	12	3	13
SRP_00203	Archaea_SRP links to Rfam database...	0.73	0.74	0.71	78	48718	42	2	30	10	27
SRP_00204	Archaea_SRP links to Rfam database...	0.73	0.74	0.72	75	49037	31	6	23	2	27
SRP_00206	Archaea_SRP links to Rfam database...	0.85	0.86	0.84	93	47784	21	6	12	3	15
SRP_00208	Archaea_SRP links to Rfam database...	0.85	0.86	0.84	87	46561	23	3	14	6	14
SRP_00209	Bacteria_small_SRP links to Rfam database...	0.57	0.59	0.55	16	4627	15	1	12	2	11
SRP_00213	Bacteria_small_SRP links to Rfam database...	0.81	0.84	0.78	21	4159	6	1	5	0	4
SRP_00215	Bacteria_small_SRP links to Rfam database...	0.84	0.84	0.84	21	3215	4	0	4	0	4
SRP_00216	Bacteria_small_SRP links to Rfam database...	0.95	0.96	0.93	26	3375	3	1	1	1	1
SRP_00217	Bacteria_small_SRP links to Rfam database...	0.90	0.92	0.88	22	3296	5	0	3	2	2
SRP_00219	Bacteria_small_SRP links to Rfam database...	0.94	0.96	0.92	22	3297	4	0	2	2	1
SRP_00222	Bacteria_small_SRP links to Rfam database...	0.94	0.96	0.92	24	3055	3	1	1	1	1
SRP_00227	Bacteria_small_SRP links to Rfam database...	0.92	0.94	0.91	29	5119	3	1	2	0	2
SRP_00228	Metazoa_SRP links to Rfam database...	0.94	0.94	0.94	89	45356	16	0	6	10	6
SRP_00229	Bacteria_small_SRP links to Rfam database...	0.34	0.37	0.32	10	5222	21	5	16	0	17
SRP_00230	Fungi_SRP links to Rfam database...	0.74	0.76	0.73	68	39528	31	3	22	6	22
SRP_00231	Bacteria_small_SRP links to Rfam database...	0.90	0.91	0.89	31	5425	4	1	3	0	3
SRP_00233	Bacteria_small_SRP links to Rfam database...	0.91	0.88	0.94	29	5120	2	0	2	0	4
SRP_00234	Bacteria_large_SRP links to Rfam database...	0.79	0.79	0.79	68	36229	27	0	18	9	18
SRP_00239	Plant_SRP links to Rfam database...	0.27	0.29	0.26	27	50300	76	14	62	0	66
SRP_00240	Plant_SRP links to Rfam database...	0.79	0.80	0.77	82	48099	32	7	17	8	20
SRP_00241	Plant_SRP links to Rfam database...	0.51	0.55	0.47	45	45961	53	14	36	3	37
SRP_00243	Bacteria_small_SRP links to Rfam database...	0.97	0.94	1.00	29	5122	1	0	0	1	2
SRP_00244	Bacteria_small_SRP links to Rfam database...	0.56	0.51	0.61	20	6870	13	3	10	0	19
SRP_00247	Metazoa_SRP links to Rfam database...	0.56	0.61	0.52	53	47176	55	8	41	6	34
SRP_00250	Bacteria_small_SRP links to Rfam database...	0.77	0.81	0.74	29	6747	12	1	9	2	7
SRP_00251	Bacteria_small_SRP links to Rfam database...	0.74	0.78	0.70	28	6981	13	1	11	1	8
SRP_00252	Metazoa_SRP links to Rfam database...	0.54	0.56	0.52	50	49044	53	7	40	6	39
SRP_00253	Metazoa_SRP links to Rfam database...	0.47	0.49	0.44	44	49356	61	9	46	6	46
SRP_00254	Fungi_SRP links to Rfam database...	0.40	0.44	0.36	27	32311	58	11	36	11	34
SRP_00255	Archaea_SRP links to Rfam database...	0.81	0.82	0.79	77	47489	27	2	18	7	17
SRP_00257	Metazoa_SRP links to Rfam database...	0.86	0.85	0.88	92	50935	22	0	13	9	16
SRP_00260	Metazoa_SRP links to Rfam database...	0.71	0.74	0.69	74	47787	37	6	28	3	26
SRP_00265	Fungi_SRP links to Rfam database...	0.65	0.67	0.63	49	41250	42	8	21	13	24
SRP_00266	Bacteria_small_SRP links to Rfam database...	0.75	0.72	0.78	21	4629	7	0	6	1	8
SRP_00267	Metazoa_SRP links to Rfam database...	0.81	0.82	0.81	79	44453	26	4	15	7	17
SRP_00268	Bacteria_small_SRP links to Rfam database...	0.93	0.93	0.93	25	4159	4	1	1	2	2
SRP_00269	Bacteria_small_SRP links to Rfam database...	0.42	0.42	0.42	14	5017	19	2	17	0	19
SRP_00270	Bacteria_small_SRP links to Rfam database...	0.43	0.45	0.41	14	4622	20	2	18	0	17
SRP_00271	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	3213	27	4	23	0	24
SRP_00273	Bacteria_small_SRP links to Rfam database...	0.84	0.85	0.83	34	6745	10	1	6	3	6
SRP_00274	Bacteria_small_SRP links to Rfam database...	0.93	0.95	0.92	36	6864	5	1	2	2	2
SRP_00276	Archaea_SRP links to Rfam database...	0.87	0.88	0.87	97	50609	18	5	10	3	13
SRP_00278	Archaea_SRP links to Rfam database...	0.73	0.74	0.72	78	45947	33	4	27	2	27
SRP_00282	Metazoa_SRP links to Rfam database...	0.31	0.37	0.26	23	43278	72	20	44	8	40
SRP_00285	Bacteria_small_SRP links to Rfam database...	0.97	0.97	0.97	29	3711	1	0	1	0	1
SRP_00286	Fungi_SRP links to Rfam database...	0.71	0.71	0.72	123	136856	58	3	44	11	51
SRP_00287	Fungi_SRP links to Rfam database...	0.49	0.50	0.48	81	141609	96	17	71	8	81
SRP_00290	Fungi_SRP links to Rfam database...	0.66	0.67	0.65	91	100435	66	4	46	16	44
SRP_00292	Fungi_SRP links to Rfam database...	0.44	0.42	0.46	73	137391	93	4	82	7	100
SRP_00294	Fungi_SRP links to Rfam database...	0.65	0.62	0.68	104	129132	54	5	45	4	63
SRP_00295	Bacteria_small_SRP links to Rfam database...	0.96	0.97	0.95	37	6864	5	1	1	3	1
SRP_00299	Metazoa_SRP links to Rfam database...	0.88	0.85	0.90	84	44160	16	0	9	7	15
SRP_00300	Metazoa_SRP links to Rfam database...	0.92	0.91	0.92	86	44160	12	1	6	5	8
SRP_00301	Fungi_SRP links to Rfam database...	0.62	0.58	0.66	50	32564	30	2	24	4	36
SRP_00302	Fungi_SRP links to Rfam database...	0.35	0.37	0.33	30	41525	70	7	54	9	51
SRP_00303	Bacteria_small_SRP links to Rfam database...	0.81	0.84	0.77	27	6635	9	1	7	1	5
SRP_00308	Bacteria_large_SRP links to Rfam database...	0.66	0.68	0.64	60	36221	37	6	28	3	28
SRP_00310	Bacteria_small_SRP links to Rfam database...	0.89	0.91	0.88	21	2902	6	0	3	3	2
SRP_00312	Bacteria_small_SRP links to Rfam database...	0.35	0.37	0.34	10	4157	19	4	15	0	17
SRP_00315	Bacteria_small_SRP links to Rfam database...	0.87	0.87	0.87	20	2903	4	0	3	1	3
SRP_00317	Metazoa_SRP links to Rfam database...	0.78	0.77	0.79	75	45055	29	0	20	9	23
SRP_00318	Bacteria_small_SRP links to Rfam database...	0.87	0.87	0.87	20	2980	4	0	3	1	3
SRP_00321	Archaea_SRP links to Rfam database...	0.68	0.70	0.67	76	47472	41	3	35	3	32
SRP_00322	Archaea_SRP links to Rfam database...	0.89	0.90	0.88	98	48404	17	1	13	3	11
SRP_00323	Archaea_SRP links to Rfam database...	0.94	0.94	0.94	101	47171	9	0	6	3	6
SRP_00324	Bacteria_small_SRP links to Rfam database...	0.46	0.48	0.44	14	5324	18	5	13	0	15
SRP_00325	Bacteria_small_SRP links to Rfam database...	1.00	1.00	1.00	33	4338	0	0	0	0	0
SRP_00326	Bacteria_small_SRP links to Rfam database...	0.56	0.58	0.55	18	5017	15	3	12	0	13
SRP_00328	Metazoa_SRP links to Rfam database...	0.60	0.62	0.58	53	39530	41	10	28	3	32
SRP_00329	Metazoa_SRP links to Rfam database...	0.59	0.61	0.58	52	39813	43	6	32	5	33
SRP_00330	Archaea_SRP links to Rfam database...	0.61	0.65	0.57	62	49978	52	4	42	6	33
SRP_00331	Metazoa_SRP links to Rfam database...	0.52	0.54	0.50	47	37581	50	10	37	3	40
SRP_00332	Archaea_SRP links to Rfam database...	0.70	0.72	0.68	76	50291	39	8	28	3	30
SRP_00333	Bacteria_small_SRP links to Rfam database...	0.84	0.85	0.83	29	5116	6	0	6	0	5
SRP_00335	Bacteria_large_SRP links to Rfam database...	0.32	0.44	0.23	17	35171	79	26	31	22	22
SRP_00337	Bacteria_large_SRP links to Rfam database...	0.76	0.77	0.76	70	35419	28	2	20	6	21
SRP_00338	Bacteria_small_SRP links to Rfam database...	0.97	0.97	0.97	35	5424	2	0	1	1	1
SRP_00339	Archaea_SRP links to Rfam database...	0.66	0.68	0.64	64	44451	42	4	32	6	30
SRP_00340	Metazoa_SRP links to Rfam database...	0.51	0.56	0.47	46	41230	56	11	41	4	36
SRP_00341	Bacteria_small_SRP links to Rfam database...	0.47	0.48	0.45	15	4720	19	0	18	1	16
SRP_00342	Bacteria_small_SRP links to Rfam database...	0.61	0.64	0.59	16	3978	16	1	10	5	9
SRP_00347	Metazoa_SRP links to Rfam database...	0.78	0.78	0.79	75	46570	24	4	16	4	21
SRP_00350	Bacteria_small_SRP links to Rfam database...	0.34	0.33	0.36	9	3891	16	2	14	0	18
SRP_00356	Bacteria_small_SRP links to Rfam database...	0.84	0.87	0.81	26	5018	6	0	6	0	4
SRP_00357	Bacteria_small_SRP links to Rfam database...	0.96	0.97	0.95	35	5319	3	1	1	1	1
SRP_00358	Bacteria_small_SRP links to Rfam database...	0.96	0.97	0.94	34	6292	3	1	1	1	1
SRP_00361	Plant_SRP links to Rfam database...	0.70	0.72	0.68	65	41810	37	6	24	7	25
SRP_00363	Bacteria_small_SRP links to Rfam database...	0.95	0.97	0.94	29	4722	5	0	2	3	1
SRP_00365	Bacteria_small_SRP links to Rfam database...	0.94	0.93	0.96	25	3377	1	0	1	0	2
SRP_00367	Bacteria_small_SRP links to Rfam database...	0.96	0.97	0.94	34	6750	3	1	1	1	1
SRP_00368	Metazoa_SRP links to Rfam database...	0.68	0.67	0.69	66	43861	32	5	24	3	32
SRP_00369	Bacteria_small_SRP links to Rfam database...	0.96	0.97	0.94	34	5742	3	1	1	1	1
SRP_00371	Fungi_SRP links to Rfam database...	0.77	0.79	0.76	65	36229	27	2	19	6	17
SRP_00382	Fungi_SRP links to Rfam database...	0.68	0.69	0.66	117	141602	74	10	49	15	53
SRP_00383	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	3217	23	2	21	0	24
TMR_00173	tmRNA links to Rfam database...	0.32	0.36	0.29	15	42143	71	13	24	34	27
TMR_00357	tmRNA links to Rfam database...	0.37	0.35	0.39	32	82946	70	10	40	20	60
TMR_00601	tmRNA links to Rfam database...	0.32	0.31	0.34	13	58958	72	5	20	47	29
TMR_00696	tmRNA links to Rfam database...	0.27	0.25	0.29	29	84977	86	12	60	14	85

^top

Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.

Table of contents:

Overview

Performance plots

Performance of CentroidAlifold(seed) - scored higher in this pairwise comparison

1. Total counts & total scores for CentroidAlifold(seed)

2. Individual counts for CentroidAlifold(seed) [ download as .csv ]

Performance of Contrafold - scored lower in this pairwise comparison

1. Total counts & total scores for Contrafold

2. Individual counts for Contrafold [ download as .csv ]