CompaRNA - on-line benchmarks of RNA structure prediction methods

Laboratory of Structural Bioinformatics @ Adam Mickiewicz University in Poznan

Home

Methods

Datasets

Rankings

RNA 2D Atlas

Help

FAQ

Contact us

RSS feeds

Twitter

Overview

Metric	CentroidAlifold(seed)		ProbKnot
MCC	0.749	>	0.540
Average MCC ± 95% Confidence Intervals	0.735 ± 0.012	>	0.600 ± 0.017
Sensitivity	0.623	>	0.529
Positive Predictive Value	0.901	>	0.551
Total TP	48490	>	41181
Total TN	104886038	>	104865156
Total FP	7916	<	39735
Total FP CONTRA	840	<	5249
Total FP INCONS	4468	<	28250
Total FP COMP	2608	<	6236
Total FN	29312	<	36621
P-value	3.56938820447e-08

^top

Performance plots

Comparison of performance of CentroidAlifold(seed) and ProbKnot. Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data (individual counts for CentroidAlifold(seed) and ProbKnot).
Average Matthews Correlation Coefficients (MCC) with 95% confidence intervals (CIs) were plotted for different RNA families, for which at least 3 members were present in the benchmarking dataset. 'n' denotes the number of MCCs used to calculate the average and CI. See tables below for raw data (individual counts for CentroidAlifold(seed) and ProbKnot).
Comparison of average Matthews Correlation Coefficients (MCCs) for CentroidAlifold(seed) and ProbKnot. The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data (individual counts for CentroidAlifold(seed) and ProbKnot).

^top

Performance of CentroidAlifold(seed) - scored higher in this pairwise comparison

1. Total counts & total scores for CentroidAlifold(seed)

Total Base Pair Counts
Total TP	48490
Total TN	104886038
Total FP	7916
Total FP CONTRA	840
Total FP INCONS	4468
Total FP COMP	2608
Total FN	29312

Total Scores
MCC	0.749
Average MCC ± 95% Confidence Intervals	0.735 ± 0.012
Sensitivity	0.623
Positive Predictive Value	0.901
Nr of predictions	706

^top

2. Individual counts for CentroidAlifold(seed) [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00001	RNaseP_arch links to Rfam database...	0.81	0.65	1.00	49	34142	0	0	0	0	26
ASE_00002	RNaseP_arch links to Rfam database...	0.82	0.67	1.00	49	35462	0	0	0	0	24
ASE_00004	RNaseP_bact_a links to Rfam database...	0.61	0.45	0.83	44	47842	9	0	9	0	53
ASE_00005	RNaseP_bact_a links to Rfam database...	0.75	0.57	0.97	67	57901	2	0	2	0	50
ASE_00006	RNaseP_bact_a links to Rfam database...	0.58	0.44	0.76	41	47532	13	0	13	0	52
ASE_00007	RNaseP_bact_a links to Rfam database...	0.83	0.71	0.98	78	59605	2	0	2	0	32
ASE_00009	RNaseP_arch links to Rfam database...	0.79	0.67	0.94	45	26058	3	0	3	0	22
ASE_00010	RNaseP_bact_b links to Rfam database...	0.86	0.74	0.98	61	49708	12	0	1	11	21
ASE_00012	RNaseP_bact_a links to Rfam database...	0.75	0.59	0.95	73	73843	7	1	3	3	50
ASE_00014	RNaseP_arch links to Rfam database...	0.74	0.58	0.95	61	54221	3	0	3	0	45
ASE_00017	RNaseP_nuc links to Rfam database...	0.79	0.69	0.90	44	50991	5	1	4	0	20
ASE_00018	RNaseP_bact_a links to Rfam database...	0.78	0.60	1.00	81	80520	0	0	0	0	53
ASE_00020	RNaseP_bact_a links to Rfam database...	0.63	0.43	0.93	54	73862	4	3	1	0	72
ASE_00021	RNaseP_bact_a links to Rfam database...	0.63	0.44	0.90	71	104117	11	2	6	3	89
ASE_00022	RNaseP_bact_b links to Rfam database...	0.80	0.65	1.00	80	82948	5	0	0	5	44
ASE_00023	RNaseP_bact_a links to Rfam database...	0.47	0.35	0.63	45	84184	28	8	18	2	82
ASE_00025	RNaseP_nuc links to Rfam database...	0.69	0.58	0.84	41	78557	8	1	7	0	30
ASE_00026	RNaseP_bact_a links to Rfam database...	0.80	0.67	0.96	74	59608	4	0	3	1	36
ASE_00028	RNaseP_bact_b links to Rfam database...	0.80	0.64	1.00	81	84585	3	0	0	3	45
ASE_00029	RNaseP_bact_a links to Rfam database...	0.45	0.34	0.61	41	82961	30	4	22	4	81
ASE_00030	RNaseP_bact_a links to Rfam database...	0.66	0.49	0.90	71	85412	8	0	8	0	74
ASE_00031	RNaseP_bact_a links to Rfam database...	0.51	0.37	0.72	46	86672	18	0	18	0	80
ASE_00032	RNaseP_bact_a links to Rfam database...	0.38	0.27	0.54	32	80141	30	1	26	3	86
ASE_00033	RNaseP_bact_a links to Rfam database...	0.80	0.65	0.99	79	64900	3	1	0	2	42
ASE_00035	RNaseP_bact_a links to Rfam database...	0.77	0.64	0.94	75	70420	8	0	5	3	43
ASE_00036	RNaseP_bact_a links to Rfam database...	0.75	0.58	0.99	76	75778	1	1	0	0	56
ASE_00037	RNaseP_bact_a links to Rfam database...	0.84	0.71	1.00	78	59262	1	0	0	1	32
ASE_00038	RNaseP_bact_a links to Rfam database...	0.74	0.54	1.00	55	53573	0	0	0	0	46
ASE_00040	RNaseP_bact_a links to Rfam database...	0.77	0.59	1.00	79	78924	2	0	0	2	54
ASE_00041	RNaseP_bact_a links to Rfam database...	0.77	0.64	0.92	69	57555	6	0	6	0	39
ASE_00042	RNaseP_bact_a links to Rfam database...	0.65	0.49	0.87	71	90018	11	0	11	0	74
ASE_00044	RNaseP_bact_a links to Rfam database...	0.83	0.70	1.00	73	54542	0	0	0	0	32
ASE_00045	RNaseP_bact_b links to Rfam database...	0.85	0.76	0.94	61	47213	9	0	4	5	19
ASE_00046	RNaseP_bact_a links to Rfam database...	0.73	0.62	0.86	64	50329	10	0	10	0	39
ASE_00047	RNaseP_bact_a links to Rfam database...	0.70	0.52	0.93	68	74232	5	0	5	0	62
ASE_00052	RNaseP_bact_a links to Rfam database...	0.75	0.63	0.91	70	61348	8	0	7	1	42
ASE_00053	RNaseP_bact_a links to Rfam database...	0.71	0.54	0.92	72	79323	6	3	3	0	61
ASE_00057	RNaseP_bact_a links to Rfam database...	0.73	0.57	0.93	77	82132	6	2	4	0	57
ASE_00064	RNaseP_bact_a links to Rfam database...	0.77	0.60	1.00	53	45398	0	0	0	0	36
ASE_00066	RNaseP_bact_a links to Rfam database...	0.75	0.56	1.00	73	72317	1	0	0	1	57
ASE_00068	RNaseP_bact_a links to Rfam database...	0.54	0.38	0.78	32	37634	9	0	9	0	53
ASE_00069	RNaseP_bact_a links to Rfam database...	0.75	0.57	0.98	80	82946	3	0	2	1	60
ASE_00074	RNaseP_bact_a links to Rfam database...	0.83	0.69	1.00	82	67814	1	0	0	1	37
ASE_00075	RNaseP_bact_a links to Rfam database...	0.64	0.44	0.92	71	108734	11	1	5	5	91
ASE_00076	RNaseP_bact_a links to Rfam database...	0.69	0.48	1.00	57	68208	0	0	0	0	61
ASE_00077	RNaseP_bact_a links to Rfam database...	0.79	0.64	0.96	55	45093	2	1	1	0	31
ASE_00078	RNaseP_bact_a links to Rfam database...	0.83	0.69	1.00	57	43014	0	0	0	0	26
ASE_00079	RNaseP_bact_a links to Rfam database...	0.63	0.47	0.84	47	55555	9	0	9	0	53
ASE_00080	RNaseP_bact_a links to Rfam database...	0.45	0.30	0.66	37	71575	19	1	18	0	86
ASE_00081	RNaseP_bact_a links to Rfam database...	0.77	0.59	1.00	57	49713	0	0	0	0	40
ASE_00082	RNaseP_bact_a links to Rfam database...	0.66	0.43	1.00	50	70450	6	0	0	6	66
ASE_00083	RNaseP_bact_a links to Rfam database...	0.72	0.52	1.00	57	62424	0	0	0	0	53
ASE_00084	RNaseP_bact_a links to Rfam database...	0.75	0.57	0.98	56	53571	1	1	0	0	43
ASE_00087	RNaseP_bact_a links to Rfam database...	0.60	0.38	0.95	54	88353	3	0	3	0	90
ASE_00090	RNaseP_bact_a links to Rfam database...	0.75	0.56	1.00	57	55554	0	0	0	0	44
ASE_00092	RNaseP_bact_a links to Rfam database...	0.70	0.50	0.98	56	63489	1	1	0	0	57
ASE_00096	RNaseP_bact_a links to Rfam database...	0.63	0.44	0.89	51	63489	6	0	6	0	64
ASE_00099	RNaseP_bact_a links to Rfam database...	0.82	0.67	1.00	80	64540	0	0	0	0	40
ASE_00100	RNaseP_nuc links to Rfam database...	0.72	0.58	0.90	44	82166	5	1	4	0	32
ASE_00102	RNaseP_bact_a links to Rfam database...	0.57	0.40	0.81	66	117774	15	1	14	0	100
ASE_00104	RNaseP_bact_a links to Rfam database...	0.81	0.67	0.99	80	64180	1	0	1	0	39
ASE_00105	RNaseP_bact_a links to Rfam database...	0.55	0.40	0.76	44	64203	14	4	10	0	67
ASE_00107	RNaseP_bact_a links to Rfam database...	0.78	0.63	0.96	80	73070	3	0	3	0	47
ASE_00108	RNaseP_nuc links to Rfam database...	0.79	0.70	0.90	44	46922	5	1	4	0	19
ASE_00111	RNaseP_nuc links to Rfam database...	0.83	0.74	0.93	42	50041	3	1	2	0	15
ASE_00112	RNaseP_bact_a links to Rfam database...	0.50	0.34	0.71	40	75410	16	0	16	0	76
ASE_00114	RNaseP_bact_b links to Rfam database...	0.69	0.62	0.76	48	45388	20	0	15	5	29
ASE_00115	RNaseP_bact_a links to Rfam database...	0.74	0.54	1.00	55	54560	0	0	0	0	46
ASE_00116	RNaseP_arch links to Rfam database...	0.86	0.76	0.98	50	31575	1	0	1	0	16
ASE_00118	RNaseP_bact_a links to Rfam database...	0.68	0.49	0.94	50	60673	4	1	2	1	52
ASE_00119	RNaseP_bact_a links to Rfam database...	0.66	0.44	0.98	48	62786	1	1	0	0	60
ASE_00120	RNaseP_arch links to Rfam database...	0.79	0.64	0.98	60	46910	2	0	1	1	34
ASE_00121	RNaseP_arch links to Rfam database...	0.81	0.66	0.98	61	45088	1	0	1	0	31
ASE_00122	RNaseP_bact_a links to Rfam database...	0.80	0.64	1.00	56	43309	1	0	0	1	32
ASE_00123	RNaseP_bact_a links to Rfam database...	0.68	0.48	0.95	41	38460	2	0	2	0	44
ASE_00125	RNaseP_bact_a links to Rfam database...	0.67	0.47	0.95	41	39297	2	0	2	0	47
ASE_00128	RNaseP_bact_a links to Rfam database...	0.73	0.54	1.00	54	53247	0	0	0	0	46
ASE_00129	RNaseP_bact_a links to Rfam database...	0.71	0.50	1.00	56	62779	0	0	0	0	55
ASE_00131	RNaseP_bact_a links to Rfam database...	0.65	0.44	0.97	37	39302	1	1	0	0	48
ASE_00132	RNaseP_bact_a links to Rfam database...	0.76	0.59	0.98	56	50346	1	1	0	0	39
ASE_00134	RNaseP_bact_a links to Rfam database...	0.69	0.54	0.89	51	50346	6	0	6	0	44
ASE_00135	RNaseP_bact_a links to Rfam database...	0.53	0.39	0.74	42	63133	15	0	15	0	67
ASE_00136	RNaseP_bact_a links to Rfam database...	0.75	0.59	0.95	54	48148	3	0	3	0	38
ASE_00137	RNaseP_bact_a links to Rfam database...	0.70	0.53	0.93	52	48460	4	0	4	0	46
ASE_00138	RNaseP_bact_a links to Rfam database...	0.79	0.63	1.00	51	40419	0	0	0	0	30
ASE_00139	RNaseP_bact_a links to Rfam database...	0.73	0.54	1.00	56	54229	0	0	0	0	48
ASE_00140	RNaseP_bact_a links to Rfam database...	0.64	0.43	0.95	54	70819	3	3	0	0	71
ASE_00142	RNaseP_bact_a links to Rfam database...	0.77	0.61	0.97	75	67084	4	0	2	2	47
ASE_00145	RNaseP_arch links to Rfam database...	0.77	0.59	1.00	66	70059	0	0	0	0	45
ASE_00146	RNaseP_bact_a links to Rfam database...	0.78	0.62	0.97	77	70797	2	0	2	0	47
ASE_00148	RNaseP_arch links to Rfam database...	0.62	0.41	0.95	63	112509	3	0	3	0	91
ASE_00151	RNaseP_bact_a links to Rfam database...	0.80	0.70	0.92	69	51928	6	5	1	0	29
ASE_00153	RNaseP_nuc links to Rfam database...	0.67	0.53	0.85	39	57584	7	1	6	0	34
ASE_00154	RNaseP_arch links to Rfam database...	0.75	0.59	0.95	63	65275	3	0	3	0	44
ASE_00155	RNaseP_arch links to Rfam database...	0.68	0.46	1.00	66	93462	0	0	0	0	76
ASE_00161	RNaseP_bact_b links to Rfam database...	0.86	0.78	0.94	68	53556	8	0	4	4	19
ASE_00163	RNaseP_bact_a links to Rfam database...	0.77	0.59	1.00	55	53246	0	0	0	0	38
ASE_00165	RNaseP_bact_a links to Rfam database...	0.69	0.50	0.94	51	52921	4	1	2	1	50
ASE_00168	RNaseP_nuc links to Rfam database...	0.79	0.69	0.90	44	60677	5	1	4	0	20
ASE_00169	RNaseP_bact_a links to Rfam database...	0.65	0.48	0.88	51	57233	7	1	6	0	56
ASE_00170	RNaseP_bact_a links to Rfam database...	0.78	0.60	1.00	56	48772	0	0	0	0	37
ASE_00171	RNaseP_bact_a links to Rfam database...	0.76	0.59	1.00	55	48461	1	0	0	1	39
ASE_00172	RNaseP_bact_a links to Rfam database...	0.72	0.53	0.98	56	58939	1	1	0	0	50
ASE_00174	RNaseP_bact_a links to Rfam database...	0.60	0.43	0.82	47	61018	10	1	9	0	62
ASE_00175	RNaseP_bact_a links to Rfam database...	0.71	0.51	0.98	55	59975	1	1	0	0	52
ASE_00176	RNaseP_bact_a links to Rfam database...	0.71	0.50	1.00	55	59976	0	0	0	0	55
ASE_00179	RNaseP_bact_a links to Rfam database...	0.79	0.63	0.98	53	44199	2	0	1	1	31
ASE_00180	RNaseP_bact_a links to Rfam database...	0.73	0.54	0.98	54	51305	1	1	0	0	46
ASE_00181	RNaseP_bact_a links to Rfam database...	0.71	0.52	0.96	55	57573	3	2	0	1	51
ASE_00182	RNaseP_bact_a links to Rfam database...	0.61	0.40	0.95	54	84198	3	0	3	0	82
ASE_00184	RNaseP_bact_a links to Rfam database...	0.75	0.56	1.00	57	54558	0	0	0	0	45
ASE_00185	RNaseP_bact_a links to Rfam database...	0.64	0.41	0.98	53	73482	1	1	0	0	75
ASE_00186	RNaseP_bact_a links to Rfam database...	0.66	0.51	0.86	67	78925	14	0	11	3	65
ASE_00187	RNaseP_arch links to Rfam database...	0.69	0.51	0.92	59	68571	5	1	4	0	56
ASE_00189	RNaseP_bact_b links to Rfam database...	0.76	0.62	0.94	63	63123	8	0	4	4	39
ASE_00190	RNaseP_bact_b links to Rfam database...	0.74	0.54	1.00	49	45402	3	0	0	3	41
ASE_00191	RNaseP_arch links to Rfam database...	0.90	0.82	0.98	50	29595	1	0	1	0	11
ASE_00192	RNaseP_bact_b links to Rfam database...	0.51	0.35	0.75	47	84603	20	0	16	4	86
ASE_00194	RNaseP_bact_b links to Rfam database...	0.72	0.53	0.97	63	73471	7	0	2	5	56
ASE_00196	RNaseP_arch links to Rfam database...	0.82	0.69	0.96	52	31572	2	0	2	0	23
ASE_00197	RNaseP_bact_a links to Rfam database...	0.63	0.46	0.86	67	89175	12	0	11	1	78
ASE_00203	RNaseP_bact_a links to Rfam database...	0.72	0.55	0.93	53	46608	4	2	2	0	43
ASE_00204	RNaseP_bact_b links to Rfam database...	0.73	0.55	0.97	62	67832	7	1	1	5	50
ASE_00205	RNaseP_arch links to Rfam database...	0.82	0.67	1.00	60	45996	1	0	0	1	30
ASE_00209	RNaseP_arch links to Rfam database...	0.83	0.69	0.98	61	43009	1	0	1	0	27
ASE_00210	RNaseP_arch links to Rfam database...	0.74	0.65	0.86	42	27212	9	0	7	2	23
ASE_00212	RNaseP_bact_a links to Rfam database...	0.63	0.45	0.89	66	93887	9	0	8	1	82
ASE_00213	RNaseP_arch links to Rfam database...	0.83	0.71	0.98	47	27213	3	0	1	2	19
ASE_00214	RNaseP_bact_a links to Rfam database...	0.73	0.54	0.98	56	56223	2	1	0	1	47
ASE_00215	RNaseP_bact_a links to Rfam database...	0.51	0.32	0.82	32	48477	7	0	7	0	67
ASE_00216	RNaseP_bact_a links to Rfam database...	0.81	0.66	1.00	54	39286	0	0	0	0	28
ASE_00217	RNaseP_bact_a links to Rfam database...	0.82	0.67	1.00	60	40410	1	0	0	1	30
ASE_00221	RNaseP_bact_a links to Rfam database...	0.83	0.70	0.99	82	64537	1	0	1	0	35
ASE_00222	RNaseP_arch links to Rfam database...	0.65	0.42	1.00	66	112035	0	0	0	0	91
ASE_00227	RNaseP_bact_a links to Rfam database...	0.57	0.43	0.76	57	78928	18	0	18	0	76
ASE_00228	RNaseP_bact_a links to Rfam database...	0.72	0.57	0.91	49	46917	6	3	2	1	37
ASE_00229	RNaseP_bact_a links to Rfam database...	0.78	0.61	1.00	53	42433	2	0	0	2	34
ASE_00231	RNaseP_bact_a links to Rfam database...	0.59	0.45	0.78	43	47840	12	0	12	0	53
ASE_00232	RNaseP_bact_a links to Rfam database...	0.81	0.65	1.00	55	38448	0	0	0	0	29
ASE_00234	RNaseP_bact_a links to Rfam database...	0.64	0.43	0.95	55	75408	3	3	0	0	74
ASE_00237	RNaseP_nuc links to Rfam database...	0.83	0.73	0.93	41	45709	3	1	2	0	15
ASE_00238	RNaseP_bact_a links to Rfam database...	0.61	0.44	0.86	50	64203	8	2	6	0	64
ASE_00240	RNaseP_bact_a links to Rfam database...	0.62	0.48	0.79	45	46608	12	0	12	0	48
ASE_00241	RNaseP_bact_a links to Rfam database...	0.79	0.64	0.98	56	43899	1	0	1	0	31
ASE_00242	RNaseP_bact_a links to Rfam database...	0.85	0.72	1.00	81	60994	1	0	0	1	31
ASE_00245	RNaseP_nuc links to Rfam database...	0.54	0.38	0.75	30	55238	12	0	10	2	48
ASE_00246	RNaseP_nuc links to Rfam database...	0.79	0.67	0.92	45	48156	4	1	3	0	22
ASE_00247	RNaseP_nuc links to Rfam database...	0.79	0.69	0.90	44	54236	5	1	4	0	20
ASE_00248	RNaseP_bact_a links to Rfam database...	0.84	0.71	1.00	81	62400	1	0	0	1	33
ASE_00250	RNaseP_bact_a links to Rfam database...	0.72	0.56	0.91	74	78922	8	1	6	1	57
ASE_00251	RNaseP_nuc links to Rfam database...	0.68	0.51	0.92	22	17742	13	0	2	11	21
ASE_00252	RNaseP_bact_a links to Rfam database...	0.63	0.43	0.92	72	115362	10	2	4	4	96
ASE_00254	RNaseP_bact_a links to Rfam database...	0.81	0.66	1.00	54	36802	0	0	0	0	28
ASE_00255	RNaseP_bact_a links to Rfam database...	0.64	0.51	0.80	66	74609	16	0	16	0	64
ASE_00257	RNaseP_bact_a links to Rfam database...	0.68	0.52	0.91	50	50985	5	1	4	0	47
ASE_00258	RNaseP_nuc links to Rfam database...	0.79	0.63	1.00	34	26762	2	0	0	2	20
ASE_00263	RNaseP_bact_a links to Rfam database...	0.68	0.47	0.98	56	70443	1	1	0	0	64
ASE_00264	RNaseP_nuc links to Rfam database...	0.58	0.40	0.85	40	49094	8	0	7	1	60
ASE_00267	RNaseP_bact_a links to Rfam database...	0.80	0.64	1.00	56	45094	0	0	0	0	32
ASE_00270	RNaseP_bact_a links to Rfam database...	0.55	0.34	0.90	43	72342	6	0	5	1	85
ASE_00274	RNaseP_bact_a links to Rfam database...	0.71	0.53	0.95	55	55553	3	3	0	0	48
ASE_00277	RNaseP_bact_a links to Rfam database...	0.73	0.57	0.93	52	48149	4	3	1	0	39
ASE_00279	RNaseP_bact_a links to Rfam database...	0.73	0.54	0.98	55	53245	1	0	1	0	46
ASE_00280	RNaseP_bact_a links to Rfam database...	0.74	0.57	0.97	56	51945	2	1	1	0	42
ASE_00281	RNaseP_bact_a links to Rfam database...	0.78	0.63	0.98	55	44495	1	0	1	0	33
ASE_00282	RNaseP_bact_a links to Rfam database...	0.66	0.45	0.98	57	77757	1	1	0	0	70
ASE_00283	RNaseP_bact_a links to Rfam database...	0.72	0.52	0.98	56	61719	1	0	1	0	51
ASE_00284	RNaseP_bact_a links to Rfam database...	0.72	0.53	0.98	57	58253	1	1	0	0	51
ASE_00285	RNaseP_bact_a links to Rfam database...	0.68	0.47	1.00	57	68949	0	0	0	0	65
ASE_00286	RNaseP_bact_a links to Rfam database...	0.78	0.61	1.00	56	46609	0	0	0	0	36
ASE_00287	RNaseP_bact_a links to Rfam database...	0.67	0.50	0.89	51	54889	6	0	6	0	52
ASE_00288	RNaseP_bact_a links to Rfam database...	0.75	0.58	0.96	54	46000	2	2	0	0	39
ASE_00289	RNaseP_bact_a links to Rfam database...	0.66	0.46	0.95	73	100948	4	0	4	0	84
ASE_00292	RNaseP_bact_a links to Rfam database...	0.76	0.58	1.00	80	81730	1	0	0	1	58
ASE_00294	RNaseP_bact_a links to Rfam database...	0.68	0.47	0.98	81	114398	2	0	2	0	90
ASE_00295	RNaseP_bact_a links to Rfam database...	0.77	0.59	1.00	77	73843	0	0	0	0	54
ASE_00296	RNaseP_bact_a links to Rfam database...	0.73	0.54	0.98	79	91725	3	0	2	1	66
ASE_00297	RNaseP_bact_a links to Rfam database...	0.61	0.45	0.83	44	52922	9	2	7	0	54
ASE_00298	RNaseP_bact_a links to Rfam database...	0.70	0.50	0.98	56	67471	1	1	0	0	57
ASE_00299	RNaseP_bact_a links to Rfam database...	0.55	0.44	0.70	44	49392	19	0	19	0	56
ASE_00303	RNaseP_nuc links to Rfam database...	0.40	0.26	0.60	25	67854	22	0	17	5	70
ASE_00305	RNaseP_bact_b links to Rfam database...	0.87	0.79	0.96	67	54545	8	0	3	5	18
ASE_00313	RNaseP_nuc links to Rfam database...	0.50	0.34	0.75	30	62441	14	2	8	4	59
ASE_00316	RNaseP_nuc links to Rfam database...	0.46	0.27	0.79	26	107847	8	0	7	1	72
ASE_00318	RNaseP_bact_b links to Rfam database...	0.79	0.62	1.00	73	80127	6	0	0	6	45
ASE_00321	RNaseP_bact_b links to Rfam database...	0.89	0.80	1.00	70	54545	5	0	0	5	18
ASE_00327	RNaseP_nuc links to Rfam database...	0.61	0.43	0.86	38	57247	11	0	6	5	51
ASE_00328	RNaseP_bact_b links to Rfam database...	0.83	0.70	1.00	78	72693	5	0	0	5	34
ASE_00329	RNaseP_nuc links to Rfam database...	0.59	0.41	0.84	26	40724	17	0	5	12	37
ASE_00330	RNaseP_nuc links to Rfam database...	0.66	0.48	0.91	43	56233	5	0	4	1	47
ASE_00332	RNaseP_bact_a links to Rfam database...	0.78	0.60	1.00	83	81727	0	0	0	0	55
ASE_00335	RNaseP_bact_b links to Rfam database...	0.81	0.66	1.00	77	75389	7	0	0	7	39
ASE_00337	RNaseP_nuc links to Rfam database...	0.57	0.44	0.76	31	39299	18	0	10	8	40
ASE_00338	RNaseP_nuc links to Rfam database...	0.51	0.33	0.80	32	66390	8	0	8	0	66
ASE_00339	RNaseP_bact_a links to Rfam database...	0.58	0.46	0.72	55	80124	22	7	14	1	64
ASE_00340	RNaseP_bact_a links to Rfam database...	0.73	0.56	0.94	48	46005	7	0	3	4	37
ASE_00342	RNaseP_bact_a links to Rfam database...	0.84	0.71	1.00	82	62399	0	0	0	0	33
ASE_00343	RNaseP_bact_a links to Rfam database...	0.37	0.27	0.51	31	83375	32	2	28	2	82
ASE_00346	RNaseP_arch links to Rfam database...	0.61	0.49	0.75	48	48141	16	0	16	0	49
ASE_00353	RNaseP_bact_a links to Rfam database...	0.72	0.52	0.98	56	57913	2	1	0	1	51
ASE_00359	RNaseP_arch links to Rfam database...	0.77	0.61	0.98	49	42728	2	0	1	1	31
ASE_00360	RNaseP_arch links to Rfam database...	0.87	0.77	0.98	50	29352	1	0	1	0	15
ASE_00361	RNaseP_bact_a links to Rfam database...	0.65	0.43	0.98	55	75410	1	1	0	0	72
ASE_00362	RNaseP_bact_a links to Rfam database...	0.78	0.62	1.00	56	48149	1	0	0	1	35
ASE_00363	RNaseP_bact_a links to Rfam database...	0.70	0.54	0.89	51	51303	6	0	6	0	43
ASE_00364	RNaseP_bact_a links to Rfam database...	0.66	0.49	0.89	51	54228	6	1	5	0	54
ASE_00366	RNaseP_bact_a links to Rfam database...	0.69	0.53	0.90	52	58595	6	2	4	0	46
ASE_00367	RNaseP_bact_a links to Rfam database...	0.81	0.65	1.00	56	43015	1	0	0	1	30
ASE_00369	RNaseP_bact_a links to Rfam database...	0.73	0.53	1.00	57	55888	0	0	0	0	50
ASE_00370	RNaseP_bact_a links to Rfam database...	0.78	0.62	0.98	52	41852	1	0	1	0	32
ASE_00372	RNaseP_bact_a links to Rfam database...	0.73	0.54	0.98	54	51948	1	0	1	0	46
ASE_00374	RNaseP_bact_a links to Rfam database...	0.78	0.60	1.00	53	44797	0	0	0	0	35
ASE_00375	RNaseP_bact_a links to Rfam database...	0.71	0.51	1.00	56	60322	1	0	0	1	54
ASE_00376	RNaseP_bact_a links to Rfam database...	0.68	0.50	0.93	53	56896	4	0	4	0	52
ASE_00377	RNaseP_bact_a links to Rfam database...	0.67	0.50	0.91	53	57572	5	1	4	0	54
ASE_00379	RNaseP_bact_a links to Rfam database...	0.79	0.63	1.00	56	46000	1	0	0	1	33
ASE_00380	RNaseP_bact_a links to Rfam database...	0.75	0.57	1.00	56	54890	0	0	0	0	43
ASE_00382	RNaseP_bact_a links to Rfam database...	0.80	0.64	1.00	54	41851	1	0	0	1	30
ASE_00383	RNaseP_bact_a links to Rfam database...	0.74	0.54	1.00	57	54558	0	0	0	0	48
ASE_00384	RNaseP_bact_a links to Rfam database...	0.78	0.61	1.00	56	48460	0	0	0	0	36
ASE_00385	RNaseP_bact_a links to Rfam database...	0.71	0.56	0.90	45	41855	5	0	5	0	36
ASE_00386	RNaseP_bact_a links to Rfam database...	0.77	0.59	1.00	57	50346	0	0	0	0	39
ASE_00387	RNaseP_bact_a links to Rfam database...	0.63	0.46	0.87	48	55890	7	0	7	0	56
ASE_00388	RNaseP_bact_a links to Rfam database...	0.77	0.60	1.00	53	45700	1	0	0	1	36
ASE_00390	RNaseP_bact_a links to Rfam database...	0.78	0.62	0.98	53	42141	1	0	1	0	32
ASE_00393	RNaseP_bact_a links to Rfam database...	0.71	0.56	0.91	52	47838	5	0	5	0	41
ASE_00394	RNaseP_bact_a links to Rfam database...	0.76	0.58	1.00	54	46917	0	0	0	0	39
ASE_00395	RNaseP_bact_a links to Rfam database...	0.80	0.64	1.00	54	41562	0	0	0	0	30
ASE_00396	RNaseP_bact_a links to Rfam database...	0.81	0.65	1.00	54	41562	0	0	0	0	29
ASE_00397	RNaseP_bact_a links to Rfam database...	0.74	0.54	1.00	57	54558	0	0	0	0	48
ASE_00398	RNaseP_bact_a links to Rfam database...	0.72	0.52	1.00	54	55891	0	0	0	0	50
ASE_00400	RNaseP_bact_a links to Rfam database...	0.72	0.52	1.00	55	57915	1	0	0	1	51
ASE_00401	RNaseP_bact_a links to Rfam database...	0.62	0.40	0.96	50	76976	2	1	1	0	76
ASE_00402	RNaseP_bact_a links to Rfam database...	0.80	0.65	1.00	55	42431	0	0	0	0	30
ASE_00403	RNaseP_bact_a links to Rfam database...	0.73	0.53	1.00	57	55888	0	0	0	0	50
ASE_00404	RNaseP_bact_a links to Rfam database...	0.80	0.65	1.00	55	43016	1	0	0	1	30
ASE_00406	RNaseP_bact_a links to Rfam database...	0.78	0.61	1.00	57	48771	0	0	0	0	37
ASE_00411	RNaseP_bact_a links to Rfam database...	0.67	0.55	0.82	49	49395	11	5	6	0	40
ASE_00412	RNaseP_bact_a links to Rfam database...	0.63	0.47	0.84	49	58253	9	2	7	0	56
ASE_00413	RNaseP_bact_a links to Rfam database...	0.72	0.57	0.90	46	44500	7	2	3	2	35
ASE_00414	RNaseP_bact_a links to Rfam database...	0.58	0.44	0.76	42	46305	13	3	10	0	53
ASE_00415	RNaseP_bact_a links to Rfam database...	0.57	0.40	0.80	41	54895	10	0	10	0	62
ASE_00416	RNaseP_bact_a links to Rfam database...	0.76	0.61	0.94	78	77338	5	1	4	0	49
ASE_00417	RNaseP_arch links to Rfam database...	0.80	0.65	0.98	65	54549	1	0	1	0	35
ASE_00418	RNaseP_arch links to Rfam database...	0.81	0.67	0.98	50	38730	1	0	1	0	25
ASE_00419	RNaseP_bact_a links to Rfam database...	0.67	0.50	0.89	51	54889	6	2	4	0	52
ASE_00420	RNaseP_nuc links to Rfam database...	0.80	0.63	1.00	40	43325	0	0	0	0	23
ASE_00422	RNaseP_bact_a links to Rfam database...	0.74	0.57	0.96	54	46915	3	0	2	1	40
ASE_00423	RNaseP_bact_a links to Rfam database...	0.77	0.64	0.93	70	56878	6	0	5	1	39
ASE_00426	RNaseP_bact_a links to Rfam database...	0.52	0.41	0.68	44	61010	22	5	16	1	64
ASE_00427	RNaseP_nuc links to Rfam database...	0.86	0.74	1.00	34	40721	0	0	0	0	12
ASE_00428	RNaseP_bact_a links to Rfam database...	0.77	0.62	0.94	78	76553	5	1	4	0	47
ASE_00430	RNaseP_bact_a links to Rfam database...	0.73	0.55	0.98	53	46917	1	0	1	0	44
ASE_00431	RNaseP_bact_a links to Rfam database...	0.56	0.44	0.71	42	46301	17	7	10	0	53
ASE_00434	RNaseP_bact_b links to Rfam database...	0.74	0.61	0.89	67	68190	14	0	8	6	43
ASE_00437	RNaseP_bact_a links to Rfam database...	0.52	0.40	0.67	54	79320	27	0	27	0	81
ASE_00438	RNaseP_bact_a links to Rfam database...	0.62	0.42	0.92	49	66013	4	1	3	0	67
ASE_00441	RNaseP_bact_a links to Rfam database...	0.65	0.44	0.96	49	64210	3	0	2	1	63
ASE_00443	RNaseP_nuc links to Rfam database...	0.63	0.46	0.85	23	26769	18	2	2	14	27
ASE_00447	RNaseP_bact_a links to Rfam database...	0.84	0.71	1.00	82	60296	0	0	0	0	34
ASE_00448	RNaseP_bact_a links to Rfam database...	0.81	0.69	0.95	77	64180	4	0	4	0	35
ASE_00451	RNaseP_bact_a links to Rfam database...	0.79	0.64	0.96	80	70793	3	0	3	0	45
ASE_00454	RNaseP_nuc links to Rfam database...	0.65	0.49	0.86	31	43329	5	0	5	0	32
CRW_00013	Intron_gpI links to Rfam database...	0.37	0.21	0.65	24	103703	17	1	12	4	91
CRW_00016	Intron_gpI links to Rfam database...	0.36	0.20	0.65	24	77384	16	1	12	3	96
CRW_00024	SSU_rRNA_archaea links to Rfam database...	0.90	0.86	0.95	393	1085187	55	6	15	34	65
CRW_00034	SSU_rRNA_bacteria links to Rfam database...	0.83	0.78	0.90	368	1141906	52	10	32	10	106
CRW_00048	SSU_rRNA_bacteria links to Rfam database...	0.87	0.82	0.93	385	1170801	38	9	20	9	85
CRW_00054	SSU_rRNA_bacteria links to Rfam database...	0.87	0.82	0.93	374	1107413	39	9	20	10	82
CRW_00059	SSU_rRNA_bacteria links to Rfam database...	0.85	0.79	0.92	372	1172342	41	9	23	9	101
CRW_00061	SSU_rRNA_bacteria links to Rfam database...	0.86	0.80	0.92	381	1181541	41	9	22	10	95
CRW_00068	SSU_rRNA_bacteria links to Rfam database...	0.87	0.82	0.93	375	1108900	39	9	21	9	82
CRW_00096	SSU_rRNA_bacteria links to Rfam database...	0.87	0.80	0.93	373	1178481	41	4	22	15	92
CRW_00140	SSU_rRNA_bacteria links to Rfam database...	0.87	0.82	0.92	379	1135867	41	9	23	9	84
CRW_00141	SSU_rRNA_bacteria links to Rfam database...	0.86	0.80	0.93	381	1201614	41	9	21	11	95
CRW_00150	SSU_rRNA_bacteria links to Rfam database...	0.86	0.80	0.93	372	1152519	39	9	21	9	94
CRW_00152	SSU_rRNA_bacteria links to Rfam database...	0.86	0.80	0.93	376	1180010	40	9	21	10	95
CRW_00166	SSU_rRNA_bacteria links to Rfam database...	0.86	0.80	0.94	374	1190796	41	4	22	15	94
CRW_00173	SSU_rRNA_bacteria links to Rfam database...	0.82	0.76	0.88	340	1082268	59	9	39	11	105
CRW_00177	SSU_rRNA_bacteria links to Rfam database...	0.84	0.78	0.91	368	1178477	47	9	26	12	105
CRW_00196	SSU_rRNA_bacteria links to Rfam database...	0.87	0.81	0.93	383	1207823	39	9	20	10	92
CRW_00230	SSU_rRNA_bacteria links to Rfam database...	0.86	0.80	0.93	381	1198515	40	9	21	10	97
CRW_00245	SSU_rRNA_bacteria links to Rfam database...	0.87	0.82	0.93	372	1105927	39	9	20	10	81
CRW_00248	SSU_rRNA_bacteria links to Rfam database...	0.85	0.78	0.92	379	1218731	41	9	22	10	105
CRW_00250	SSU_rRNA_bacteria links to Rfam database...	0.86	0.80	0.92	382	1198513	40	9	22	9	96
CRW_00256	SSU_rRNA_bacteria links to Rfam database...	0.86	0.80	0.93	374	1192336	40	9	21	10	94
CRW_00270	SSU_rRNA_bacteria links to Rfam database...	0.87	0.82	0.93	373	1111883	39	9	21	9	82
CRW_00271	SSU_rRNA_bacteria links to Rfam database...	0.84	0.77	0.90	358	1122354	48	8	31	9	104
CRW_00273	SSU_rRNA_bacteria links to Rfam database...	0.86	0.81	0.92	361	1085207	41	8	25	8	85
CRW_00275	SSU_rRNA_bacteria links to Rfam database...	0.87	0.81	0.92	371	1114869	40	9	22	9	86
CRW_00277	SSU_rRNA_bacteria links to Rfam database...	0.85	0.80	0.90	363	1110392	50	13	27	10	90
CRW_00278	SSU_rRNA_bacteria links to Rfam database...	0.83	0.77	0.90	347	1129872	48	8	29	11	103
CRW_00279	SSU_rRNA_bacteria links to Rfam database...	0.86	0.80	0.92	371	1180013	46	9	23	14	93
CRW_00280	SSU_rRNA_bacteria links to Rfam database...	0.84	0.79	0.90	357	1117863	52	9	31	12	96
CRW_00281	SSU_rRNA_bacteria links to Rfam database...	0.86	0.79	0.92	368	1144943	39	9	21	9	96
CRW_00283	SSU_rRNA_bacteria links to Rfam database...	0.79	0.73	0.84	316	1015651	66	12	46	8	116
CRW_00284	SSU_rRNA_bacteria links to Rfam database...	0.84	0.79	0.90	360	1131361	50	9	30	11	96
CRW_00285	SSU_rRNA_bacteria links to Rfam database...	0.85	0.79	0.91	361	1117862	46	11	26	9	97
CRW_00289	SSU_rRNA_bacteria links to Rfam database...	0.83	0.77	0.90	367	1189245	50	10	31	9	109
CRW_00292	SSU_rRNA_bacteria links to Rfam database...	0.76	0.70	0.82	322	1123856	83	13	59	11	139
CRW_00306	SSU_rRNA_eukarya links to Rfam database...	0.53	0.37	0.77	170	1445629	73	4	47	22	292
CRW_00366	SSU_rRNA_eukarya links to Rfam database...	0.53	0.37	0.77	177	1579523	74	4	49	21	305
CRW_00371	SSU_rRNA_eukarya links to Rfam database...	0.54	0.37	0.78	185	1611673	73	4	48	21	311
CRW_00379	SSU_rRNA_eukarya links to Rfam database...	0.45	0.30	0.69	158	2126723	93	6	66	21	376
CRW_00411	SSU_rRNA_eukarya links to Rfam database...	0.53	0.37	0.76	182	1615264	78	4	53	21	314
CRW_00414	SSU_rRNA_eukarya links to Rfam database...	0.52	0.36	0.74	177	1665987	83	5	56	22	318
CRW_00466	SSU_rRNA_bacteria links to Rfam database...	0.87	0.82	0.93	374	1116361	39	8	22	9	84
CRW_00589	SSU_rRNA_bacteria links to Rfam database...	0.87	0.81	0.93	360	1094074	43	2	24	17	85
CRW_00590	SSU_rRNA_bacteria links to Rfam database...	0.87	0.81	0.93	364	1119366	44	2	24	18	88
CRW_00591	SSU_rRNA_bacteria links to Rfam database...	0.88	0.82	0.94	365	1098513	44	3	22	19	81
CRW_00610	Intron_gpI links to Rfam database...	0.51	0.33	0.77	27	36280	11	1	7	3	54
CRW_00613	Intron_gpI links to Rfam database...	0.48	0.32	0.71	25	34945	14	0	10	4	53
CRW_00614	Intron_gpI links to Rfam database...	0.43	0.30	0.63	17	121744	16	2	8	6	40
CRW_00618	Intron_gpI links to Rfam database...	0.41	0.28	0.61	17	56252	12	3	8	1	44
CRW_00619	Intron_gpI links to Rfam database...	0.53	0.30	0.92	22	165001	5	0	2	3	51
CRW_00620	Intron_gpI links to Rfam database...	0.44	0.29	0.69	18	150949	18	0	8	10	45
CRW_00621	Intron_gpI links to Rfam database...	0.40	0.27	0.61	19	153150	14	3	9	2	52
CRW_00623	Intron_gpI links to Rfam database...	0.49	0.29	0.83	24	129766	9	1	4	4	59
CRW_00633	Intron_gpI links to Rfam database...	0.31	0.17	0.58	18	63515	14	2	11	1	88
CRW_00634	Intron_gpI links to Rfam database...	0.35	0.20	0.61	19	64589	20	1	11	8	75
CRW_00670	Intron_gpI links to Rfam database...	0.49	0.28	0.89	33	70088	8	0	4	4	87
CRW_00671	Intron_gpI links to Rfam database...	0.50	0.28	0.89	33	62798	8	0	4	4	84
CRW_00672	Intron_gpI links to Rfam database...	0.51	0.30	0.89	33	72353	8	0	4	4	78
CRW_00674	Intron_gpI links to Rfam database...	0.29	0.16	0.54	20	83399	20	6	11	3	104
CRW_00676	Intron_gpI links to Rfam database...	0.35	0.17	0.69	20	93499	20	0	9	11	95
CRW_00692	Intron_gpI links to Rfam database...	0.39	0.22	0.69	20	68606	20	0	9	11	70
CRW_00759	SSU_rRNA_eukarya links to Rfam database...	0.50	0.35	0.72	168	1636913	92	3	61	28	313
CRW_00763	SSU_rRNA_bacteria links to Rfam database...	0.85	0.77	0.93	344	1215650	51	2	24	25	102
CRW_00772	SSU_rRNA_bacteria links to Rfam database...	0.80	0.74	0.87	297	945660	69	2	41	26	107
CRW_00778	SSU_rRNA_bacteria links to Rfam database...	0.84	0.79	0.90	303	1201687	92	4	31	57	81
CRW_00789	SSU_rRNA_bacteria links to Rfam database...	0.85	0.79	0.92	353	1137401	53	5	27	21	94
CRW_00795	SSU_rRNA_bacteria links to Rfam database...	0.81	0.74	0.88	291	1152590	94	3	37	54	103
CRW_00800	SSU_rRNA_eukarya links to Rfam database...	0.45	0.30	0.67	141	1401765	92	7	62	23	329
CRW_00849	SSU_rRNA_bacteria links to Rfam database...	0.82	0.76	0.89	358	1117856	57	12	34	11	112
CRW_00997	SSU_rRNA_bacteria links to Rfam database...	0.87	0.81	0.93	377	1135871	39	9	21	9	87
CRW_01153	SSU_rRNA_eukarya links to Rfam database...	0.48	0.33	0.70	167	1606289	89	4	68	17	336
CRW_01171	SSU_rRNA_eukarya links to Rfam database...	0.52	0.35	0.77	179	1593773	71	4	49	18	327
CRW_01343	SSU_rRNA_archaea links to Rfam database...	0.86	0.81	0.92	351	977520	61	3	27	31	83
PDB_00005	Tymo_tRNA-like links to Rfam database...	0.80	0.64	1.00	9	937	0	0	0	0	5
PDB_00012	mir-TAR links to Rfam database...	1.00	1.00	1.00	7	399	2	0	0	2	0
PDB_00213	Gammaretro_CES links to Rfam database...	0.85	0.73	1.00	30	5020	0	0	0	0	11
PDB_00553	mir-TAR links to Rfam database...	0.95	0.91	1.00	10	455	0	0	0	0	1
PDB_00703	SSU_rRNA_bacteria links to Rfam database...	0.81	0.72	0.92	356	1073456	57	6	27	24	139
PDB_00716	HDV_ribozyme links to Rfam database...	0.75	0.61	0.93	14	2686	1	0	1	0	9
PDB_00741	Entero_5_CRE links to Rfam database...	0.72	0.53	1.00	9	694	0	0	0	0	8
PDB_00810	s2m links to Rfam database...	0.87	0.76	1.00	13	1068	1	0	0	1	4
PDB_00827	Intron_gpI links to Rfam database...	0.58	0.40	0.84	32	26990	6	1	5	0	49
PDB_00828	Purine links to Rfam database...	0.88	0.78	1.00	21	2464	0	0	0	0	6
PDB_00829	Purine links to Rfam database...	0.91	0.83	1.00	20	2258	0	0	0	0	4
PDB_00854	SSU_rRNA_bacteria links to Rfam database...	0.78	0.66	0.92	354	1500393	66	5	26	35	181
PDB_00876	HIV_FE links to Rfam database...	0.53	0.50	0.59	10	973	7	0	7	0	10
PDB_00919	RNaseP_bact_a links to Rfam database...	0.49	0.35	0.69	36	44201	18	0	16	2	67
PDB_01001	tRNA links to Rfam database...	0.00	0.00	0.00	0	2139	6	0	6	0	18
PDB_01020	Purine links to Rfam database...	0.91	0.83	1.00	19	2259	1	0	0	1	4
PDB_01050	UnaL2 links to Rfam database...	0.68	0.46	1.00	6	624	2	0	0	2	7
PDB_01051	Telomerase-cil links to Rfam database...	0.96	0.92	1.00	12	891	4	0	0	4	1
PDB_01073	SAM links to Rfam database...	0.84	0.71	1.00	24	4347	1	0	0	1	10
PDB_01088	SSU_rRNA_bacteria links to Rfam database...	0.75	0.63	0.90	344	1471089	68	3	34	31	203
PDB_01092	glmS links to Rfam database...	0.72	0.58	0.91	30	10120	4	0	3	1	22
PDB_01103	SSU_rRNA_bacteria links to Rfam database...	0.78	0.65	0.92	368	1606129	52	6	25	21	194
PDB_01105	SSU_rRNA_bacteria links to Rfam database...	0.79	0.68	0.93	367	1433576	53	2	26	25	173
PDB_01114	TPP links to Rfam database...	0.77	0.59	1.00	16	2834	1	0	0	1	11
PDB_01120	SSU_rRNA_bacteria links to Rfam database...	0.80	0.70	0.92	368	1204728	49	8	24	17	159
PDB_01152	HIV_FS2 links to Rfam database...	0.80	0.64	1.00	9	552	0	0	0	0	5
PDB_01236	ykoK links to Rfam database...	0.88	0.78	1.00	42	11586	3	0	0	3	12
PDB_01273	SSU_rRNA_bacteria links to Rfam database...	0.80	0.71	0.90	348	1117874	63	6	32	25	143
RFA_00389	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	3	0	0	3	1
RFA_00390	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	2	0	0	2	1
RFA_00391	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	3	0	0	3	1
RFA_00396	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	3	0	0	3	1
RFA_00402	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	3	0	0	3	1
RFA_00409	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	3	0	0	3	1
RFA_00416	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1471	2	0	0	2	1
RFA_00425	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1639	3	0	0	3	1
RFA_00427	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1471	3	0	0	3	1
RFA_00433	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	2	0	0	2	1
RFA_00434	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	3	0	0	3	1
RFA_00436	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	3	0	0	3	1
RFA_00440	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1471	3	0	0	3	1
RFA_00442	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	3	0	0	3	1
RFA_00444	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1526	3	0	0	3	1
RFA_00446	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1471	3	0	0	3	1
RFA_00449	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1471	3	0	0	3	1
RFA_00582	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	5980	3	0	0	3	0
RFA_00583	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4935	3	0	0	3	0
RFA_00584	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	2911	3	0	0	3	0
RFA_00585	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4836	3	0	0	3	0
RFA_00586	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	3901	3	0	0	3	0
RFA_00587	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4836	3	0	0	3	0
RFA_00588	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4545	3	0	0	3	0
RFA_00589	Y_RNA links to Rfam database...	0.97	0.93	1.00	14	4357	3	0	0	3	1
RFA_00594	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	2760	3	0	0	3	0
RFA_00596	Y_RNA links to Rfam database...	0.93	0.87	1.00	13	5982	3	0	0	3	2
RFA_00597	Telomerase-vert links to Rfam database...	0.73	0.64	0.83	70	97819	19	0	14	5	39
RFA_00598	Telomerase-vert links to Rfam database...	0.72	0.63	0.81	64	84587	26	0	15	11	37
RFA_00599	Telomerase-vert links to Rfam database...	0.85	0.73	0.99	81	101393	4	0	1	3	30
RFA_00600	Telomerase-vert links to Rfam database...	0.79	0.68	0.92	68	120221	15	0	6	9	32
RFA_00601	Telomerase-vert links to Rfam database...	0.82	0.71	0.95	81	99150	9	0	4	5	33
RFA_00602	Telomerase-vert links to Rfam database...	0.81	0.71	0.93	82	101387	10	0	6	4	34
RFA_00603	Telomerase-cil links to Rfam database...	0.96	0.91	1.00	32	13498	0	0	0	0	3
RFA_00604	Telomerase-cil links to Rfam database...	0.97	0.94	1.00	33	13497	0	0	0	0	2
RFA_00605	Telomerase-cil links to Rfam database...	0.97	0.94	1.00	33	15192	0	0	0	0	2
RFA_00606	Telomerase-cil links to Rfam database...	0.91	0.82	1.00	32	21289	0	0	0	0	7
RFA_00607	Telomerase-cil links to Rfam database...	0.94	0.89	1.00	32	17734	0	0	0	0	4
RFA_00609	Telomerase-cil links to Rfam database...	0.93	0.86	1.00	32	17923	0	0	0	0	5
RFA_00610	Telomerase-cil links to Rfam database...	0.93	0.86	1.00	32	17173	0	0	0	0	5
RFA_00611	Telomerase-cil links to Rfam database...	0.96	0.91	1.00	32	13009	0	0	0	0	3
RFA_00613	Telomerase-cil links to Rfam database...	0.97	0.94	1.00	33	12847	0	0	0	0	2
RFA_00615	Telomerase-cil links to Rfam database...	0.85	0.80	0.90	28	13335	3	0	3	0	7
RFA_00620	Telomerase-cil links to Rfam database...	0.91	0.82	1.00	32	21913	0	0	0	0	7
RFA_00621	RNase_MRP links to Rfam database...	0.41	0.30	0.56	23	46319	19	2	16	1	53
RFA_00623	RNase_MRP links to Rfam database...	0.45	0.29	0.70	23	43923	11	1	9	1	55
RFA_00624	RNase_MRP links to Rfam database...	0.68	0.61	0.77	37	30087	11	0	11	0	24
RFA_00626	rne5 links to Rfam database...	0.98	0.95	1.00	83	56533	8	0	0	8	4
RFA_00627	rne5 links to Rfam database...	0.98	0.97	1.00	84	56869	10	0	0	10	3
RFA_00628	rne5 links to Rfam database...	0.98	0.95	1.00	82	57209	12	0	0	12	4
RFA_00630	rne5 links to Rfam database...	0.93	0.90	0.96	78	56872	16	0	3	13	9
RFA_00632	HDV_ribozyme links to Rfam database...	0.74	0.64	0.86	18	4074	3	2	1	0	10
RFA_00636	HDV_ribozyme links to Rfam database...	0.78	0.68	0.90	19	3984	2	2	0	0	9
RFA_00639	7SK links to Rfam database...	0.67	0.48	0.93	42	54570	3	0	3	0	45
RFA_00642	Vimentin3 links to Rfam database...	0.41	0.17	1.00	3	2923	0	0	0	0	15
RFA_00643	Vimentin3 links to Rfam database...	0.00	0.00	0.00	0	2211	0	0	0	0	18
RFA_00644	Vimentin3 links to Rfam database...	0.00	0.00	0.00	0	2701	0	0	0	0	18
RFA_00645	Vimentin3 links to Rfam database...	0.23	0.06	1.00	1	2414	0	0	0	0	17
RFA_00649	Vimentin3 links to Rfam database...	0.00	0.00	0.00	0	2145	0	0	0	0	18
RFA_00651	Vimentin3 links to Rfam database...	0.00	0.00	0.00	0	2080	0	0	0	0	18
RFA_00653	Vimentin3 links to Rfam database...	0.33	0.11	1.00	2	2143	0	0	0	0	16
RFA_00654	Vimentin3 links to Rfam database...	0.00	0.00	0.00	0	2415	0	0	0	0	18
RFA_00658	Hammerhead_1 links to Rfam database...	0.71	0.57	0.89	8	1119	2	0	1	1	6
RFA_00659	Hammerhead_1 links to Rfam database...	0.65	0.43	1.00	6	1122	0	0	0	0	8
RFA_00664	Hammerhead_1 links to Rfam database...	0.65	0.43	1.00	6	984	0	0	0	0	8
RFA_00667	Hammerhead_1 links to Rfam database...	0.65	0.43	1.00	6	984	0	0	0	0	8
RFA_00668	Hammerhead_1 links to Rfam database...	0.65	0.43	1.00	6	984	0	0	0	0	8
RFA_00672	Hammerhead_1 links to Rfam database...	0.78	0.62	1.00	8	895	0	0	0	0	5
RFA_00673	Hammerhead_1 links to Rfam database...	0.65	0.43	1.00	6	1122	0	0	0	0	8
RFA_00674	Hammerhead_1 links to Rfam database...	0.60	0.43	0.86	6	1121	1	0	1	0	8
RFA_00675	Hammerhead_1 links to Rfam database...	0.65	0.43	1.00	6	984	0	0	0	0	8
RFA_00677	Hammerhead_1 links to Rfam database...	0.65	0.43	1.00	6	984	0	0	0	0	8
RFA_00678	Hammerhead_1 links to Rfam database...	0.65	0.43	1.00	6	940	0	0	0	0	8
RFA_00680	Hammerhead_1 links to Rfam database...	0.65	0.43	1.00	6	1122	0	0	0	0	8
RFA_00684	Hammerhead_1 links to Rfam database...	0.65	0.43	1.00	6	984	0	0	0	0	8
RFA_00685	Hammerhead_1 links to Rfam database...	0.65	0.43	1.00	6	984	0	0	0	0	8
RFA_00695	Hammerhead_1 links to Rfam database...	0.80	0.64	1.00	9	7012	0	0	0	0	5
RFA_00703	Hammerhead_1 links to Rfam database...	0.80	0.64	1.00	9	4269	0	0	0	0	5
RFA_00704	Hammerhead_1 links to Rfam database...	0.65	0.43	1.00	6	984	0	0	0	0	8
RFA_00705	Hammerhead_1 links to Rfam database...	0.76	0.64	0.90	9	1025	2	0	1	1	5
RFA_00706	Hammerhead_1 links to Rfam database...	0.65	0.43	1.00	6	1029	0	0	0	0	8
RFA_00707	Hammerhead_1 links to Rfam database...	0.65	0.43	1.00	6	1029	0	0	0	0	8
RFA_00708	Hammerhead_1 links to Rfam database...	0.71	0.57	0.89	8	1026	2	0	1	1	6
RFA_00709	Hammerhead_1 links to Rfam database...	0.65	0.43	1.00	6	984	0	0	0	0	8
RFA_00710	Hammerhead_1 links to Rfam database...	0.72	0.64	0.82	9	979	3	0	2	1	5
RFA_00711	Hammerhead_1 links to Rfam database...	0.65	0.43	1.00	6	1029	0	0	0	0	8
RFA_00715	Hammerhead_1 links to Rfam database...	0.65	0.43	1.00	6	940	0	0	0	0	8
RFA_00716	Hammerhead_1 links to Rfam database...	0.65	0.43	1.00	6	940	0	0	0	0	8
RFA_00717	Hammerhead_1 links to Rfam database...	0.75	0.57	1.00	8	895	0	0	0	0	6
RFA_00730	s2m links to Rfam database...	1.00	1.00	1.00	12	891	2	0	0	2	0
RFA_00731	s2m links to Rfam database...	1.00	1.00	1.00	12	891	2	0	0	2	0
RFA_00733	s2m links to Rfam database...	1.00	1.00	1.00	12	891	2	0	0	2	0
RFA_00734	s2m links to Rfam database...	1.00	1.00	1.00	12	891	2	0	0	2	0
RFA_00736	s2m links to Rfam database...	1.00	1.00	1.00	12	891	2	0	0	2	0
RFA_00737	s2m links to Rfam database...	1.00	1.00	1.00	12	891	2	0	0	2	0
RFA_00745	s2m links to Rfam database...	1.00	1.00	1.00	12	934	2	0	0	2	0
RFA_00749	s2m links to Rfam database...	1.00	1.00	1.00	12	891	2	0	0	2	0
RFA_00758	s2m links to Rfam database...	1.00	1.00	1.00	12	891	2	0	0	2	0
RFA_00762	s2m links to Rfam database...	1.00	1.00	1.00	12	891	2	0	0	2	0
RFA_00763	s2m links to Rfam database...	1.00	1.00	1.00	12	891	2	0	0	2	0
RFA_00764	s2m links to Rfam database...	1.00	1.00	1.00	12	891	2	0	0	2	0
RFA_00765	s2m links to Rfam database...	1.00	1.00	1.00	12	891	2	0	0	2	0
RFA_00767	Corona_pk3 links to Rfam database...	0.74	0.56	1.00	10	1881	0	0	0	0	8
RFA_00768	Corona_pk3 links to Rfam database...	0.74	0.56	1.00	10	1881	0	0	0	0	8
RFA_00769	Corona_pk3 links to Rfam database...	0.74	0.56	1.00	10	1943	0	0	0	0	8
RFA_00770	Corona_pk3 links to Rfam database...	0.74	0.56	1.00	10	2006	0	0	0	0	8
RFA_00773	Corona_pk3 links to Rfam database...	0.74	0.56	1.00	10	1943	0	0	0	0	8
RFA_00779	Corona_pk3 links to Rfam database...	0.74	0.56	1.00	10	1943	0	0	0	0	8
RFA_00781	Gammaretro_CES links to Rfam database...	0.97	0.94	1.00	30	5020	0	0	0	0	2
RFA_00786	Gammaretro_CES links to Rfam database...	0.97	0.94	1.00	30	5020	0	0	0	0	2
RFA_00791	Gammaretro_CES links to Rfam database...	0.97	0.94	1.00	30	5121	0	0	0	0	2
RFA_00792	Gammaretro_CES links to Rfam database...	0.97	0.94	1.00	30	5020	0	0	0	0	2
RFA_00801	Gammaretro_CES links to Rfam database...	0.97	0.94	1.00	30	5020	0	0	0	0	2
RFA_00805	RNAIII links to Rfam database...	0.64	0.41	1.00	61	133325	1	0	0	1	89
RFA_00808	RydC links to Rfam database...	0.65	0.56	0.75	9	2004	3	1	2	0	7
RFA_00809	RydC links to Rfam database...	0.43	0.38	0.50	6	2133	6	0	6	0	10
RFA_00814	R2_retro_el links to Rfam database...	0.91	0.83	1.00	34	25166	1	0	0	1	7
RFA_00815	R2_retro_el links to Rfam database...	0.94	0.88	1.00	36	24495	1	0	0	1	5
RFA_00816	R2_retro_el links to Rfam database...	0.94	0.88	1.00	36	23184	1	0	0	1	5
RFA_00817	R2_retro_el links to Rfam database...	0.92	0.85	1.00	35	21910	1	0	0	1	6
RFA_00818	R2_retro_el links to Rfam database...	0.94	0.88	1.00	36	20265	1	0	0	1	5
RFA_00819	R2_retro_el links to Rfam database...	0.94	0.88	1.00	36	27930	1	0	0	1	5
RFA_00820	bicoid_3 links to Rfam database...	0.90	0.83	0.99	133	151390	14	0	2	12	27
RFA_00830	bicoid_3 links to Rfam database...	0.76	0.68	0.84	105	152503	32	1	19	12	49
SPR_00020	tRNA links to Rfam database...	0.55	0.30	1.00	6	2695	0	0	0	0	14
SPR_00023	tRNA links to Rfam database...	0.53	0.29	1.00	6	2844	0	0	0	0	15
SPR_00137	tRNA links to Rfam database...	0.49	0.24	1.00	5	2921	1	0	0	1	16
SPR_00273	tRNA links to Rfam database...	0.44	0.24	0.83	5	2844	1	0	1	0	16
SPR_00277	tRNA links to Rfam database...	0.53	0.29	1.00	6	2920	0	0	0	0	15
SPR_00394	tRNA links to Rfam database...	0.53	0.29	1.00	6	3649	0	0	0	0	15
SPR_00402	tRNA links to Rfam database...	0.53	0.29	1.00	6	2550	0	0	0	0	15
SPR_00721	tRNA links to Rfam database...	0.53	0.29	1.00	6	2920	0	0	0	0	15
SPR_00816	tRNA links to Rfam database...	0.55	0.30	1.00	6	3480	0	0	0	0	14
SPR_01157	tRNA links to Rfam database...	0.53	0.29	1.00	6	2769	0	0	0	0	15
SRP_00001	Bacteria_large_SRP links to Rfam database...	0.82	0.68	1.00	27	6759	5	0	0	5	13
SRP_00002	Metazoa_SRP links to Rfam database...	0.91	0.83	0.99	85	45064	6	0	1	5	17
SRP_00006	Metazoa_SRP links to Rfam database...	0.91	0.82	1.00	83	45670	7	0	0	7	18
SRP_00008	Bacteria_small_SRP links to Rfam database...	0.96	0.92	1.00	23	2903	2	0	0	2	2
SRP_00009	Plant_SRP links to Rfam database...	0.85	0.77	0.94	79	46581	13	0	5	8	23
SRP_00011	Plant_SRP links to Rfam database...	0.81	0.74	0.89	77	46273	15	0	10	5	27
SRP_00012	Plant_SRP links to Rfam database...	0.85	0.78	0.93	79	46275	14	0	6	8	22
SRP_00015	Plant_SRP links to Rfam database...	0.82	0.75	0.89	74	46277	19	0	9	10	25
SRP_00016	Archaea_SRP links to Rfam database...	0.89	0.81	0.98	88	47805	6	0	2	4	21
SRP_00018	Fungi_SRP links to Rfam database...	0.70	0.58	0.84	47	38447	14	2	7	5	34
SRP_00019	Fungi_SRP links to Rfam database...	0.69	0.51	0.94	46	35997	8	1	2	5	45
SRP_00020	Bacteria_small_SRP links to Rfam database...	0.89	0.85	0.93	28	5535	2	1	1	0	5
SRP_00024	Bacteria_large_SRP links to Rfam database...	0.56	0.31	1.00	27	37648	4	0	0	4	60
SRP_00026	Bacteria_large_SRP links to Rfam database...	0.55	0.31	1.00	27	36829	4	0	0	4	61
SRP_00027	Bacteria_large_SRP links to Rfam database...	0.57	0.32	1.00	28	37100	4	0	0	4	59
SRP_00030	Bacteria_large_SRP links to Rfam database...	0.55	0.31	1.00	27	36829	4	0	0	4	61
SRP_00031	Bacteria_large_SRP links to Rfam database...	0.54	0.29	1.00	26	36289	5	0	0	5	63
SRP_00037	Bacteria_large_SRP links to Rfam database...	0.56	0.31	1.00	27	36558	4	0	0	4	60
SRP_00038	Bacteria_small_SRP links to Rfam database...	0.90	0.82	1.00	27	5023	3	0	0	3	6
SRP_00040	Bacteria_small_SRP links to Rfam database...	0.55	0.52	0.59	16	5538	14	1	10	3	15
SRP_00042	Bacteria_small_SRP links to Rfam database...	0.85	0.80	0.91	20	3983	6	1	1	4	5
SRP_00043	Bacteria_small_SRP links to Rfam database...	0.42	0.41	0.43	12	5022	18	2	14	2	17
SRP_00044	Bacteria_small_SRP links to Rfam database...	0.85	0.81	0.90	26	6076	4	1	2	1	6
SRP_00046	Bacteria_small_SRP links to Rfam database...	0.94	0.88	1.00	28	4725	2	0	0	2	4
SRP_00050	Metazoa_SRP links to Rfam database...	0.94	0.88	1.00	87	44763	5	0	0	5	12
SRP_00051	Bacteria_small_SRP links to Rfam database...	0.76	0.67	0.87	20	5437	7	0	3	4	10
SRP_00053	Metazoa_SRP links to Rfam database...	0.89	0.84	0.94	79	45066	13	0	5	8	15
SRP_00054	Bacteria_small_SRP links to Rfam database...	0.92	0.84	1.00	27	5538	3	0	0	3	5
SRP_00056	Bacteria_small_SRP links to Rfam database...	0.63	0.54	0.74	20	6414	9	1	6	2	17
SRP_00057	Bacteria_small_SRP links to Rfam database...	0.79	0.69	0.92	24	6302	6	1	1	4	11
SRP_00058	Bacteria_small_SRP links to Rfam database...	0.88	0.82	0.93	28	5748	2	1	1	0	6
SRP_00060	Metazoa_SRP links to Rfam database...	0.93	0.86	1.00	86	44465	5	0	0	5	14
SRP_00061	Metazoa_SRP links to Rfam database...	0.92	0.85	1.00	85	44765	6	0	0	6	15
SRP_00066	Metazoa_SRP links to Rfam database...	0.91	0.82	1.00	82	45369	10	0	0	10	18
SRP_00067	Bacteria_small_SRP links to Rfam database...	0.81	0.71	0.93	27	5749	3	1	1	1	11
SRP_00069	Fungi_SRP links to Rfam database...	0.62	0.49	0.78	42	34399	16	2	10	4	43
SRP_00070	Fungi_SRP links to Rfam database...	0.59	0.40	0.87	48	126701	14	0	7	7	73
SRP_00072	Bacteria_small_SRP links to Rfam database...	0.68	0.66	0.70	19	6301	11	0	8	3	10
SRP_00073	Fungi_SRP links to Rfam database...	0.56	0.49	0.65	35	39006	24	6	13	5	36
SRP_00074	Bacteria_small_SRP links to Rfam database...	0.52	0.48	0.56	14	6530	16	0	11	5	15
SRP_00075	Bacteria_small_SRP links to Rfam database...	0.34	0.32	0.37	11	5535	19	0	19	0	23
SRP_00077	Bacteria_small_SRP links to Rfam database...	0.59	0.51	0.68	19	6642	11	0	9	2	18
SRP_00079	Plant_SRP links to Rfam database...	0.74	0.68	0.81	60	41831	29	0	14	15	28
SRP_00081	Bacteria_small_SRP links to Rfam database...	0.65	0.65	0.67	20	5535	10	1	9	0	11
SRP_00084	Bacteria_small_SRP links to Rfam database...	0.88	0.82	0.93	28	5430	2	1	1	0	6
SRP_00085	Plant_SRP links to Rfam database...	0.86	0.78	0.95	79	45368	13	0	4	9	22
SRP_00086	Metazoa_SRP links to Rfam database...	0.94	0.88	1.00	88	44165	4	0	0	4	12
SRP_00087	Fungi_SRP links to Rfam database...	0.40	0.33	0.49	19	37362	26	5	15	6	39
SRP_00088	Bacteria_large_SRP links to Rfam database...	0.55	0.30	1.00	27	34164	4	0	0	4	62
SRP_00089	Bacteria_large_SRP links to Rfam database...	0.55	0.30	1.00	27	35751	4	0	0	4	63
SRP_00090	Bacteria_large_SRP links to Rfam database...	0.55	0.30	1.00	27	35484	4	0	0	4	63
SRP_00091	Fungi_SRP links to Rfam database...	0.59	0.46	0.75	44	52916	19	2	13	4	51
SRP_00094	Bacteria_small_SRP links to Rfam database...	0.82	0.83	0.80	20	4070	9	1	4	4	4
SRP_00095	Bacteria_small_SRP links to Rfam database...	0.82	0.84	0.81	21	3979	8	1	4	3	4
SRP_00098	Bacteria_small_SRP links to Rfam database...	0.65	0.57	0.75	21	6413	9	1	6	2	16
SRP_00099	Plant_SRP links to Rfam database...	0.61	0.58	0.64	55	44764	35	2	29	4	40
SRP_00102	Metazoa_SRP links to Rfam database...	0.93	0.86	1.00	87	44464	5	0	0	5	14
SRP_00103	Metazoa_SRP links to Rfam database...	0.93	0.86	1.00	88	45363	4	0	0	4	14
SRP_00104	Fungi_SRP links to Rfam database...	0.52	0.45	0.60	31	34401	23	6	15	2	38
SRP_00105	Bacteria_small_SRP links to Rfam database...	0.89	0.79	1.00	27	5538	3	0	0	3	7
SRP_00106	Bacteria_large_SRP links to Rfam database...	0.69	0.72	0.67	18	5226	15	3	6	6	7
SRP_00107	Bacteria_small_SRP links to Rfam database...	0.46	0.53	0.40	10	3630	19	3	12	4	9
SRP_00117	Metazoa_SRP links to Rfam database...	0.91	0.83	1.00	85	45366	6	0	0	6	17
SRP_00121	Bacteria_small_SRP links to Rfam database...	0.82	0.80	0.83	20	4254	6	0	4	2	5
SRP_00123	Metazoa_SRP links to Rfam database...	0.78	0.68	0.90	62	36516	15	1	6	8	29
SRP_00124	Metazoa_SRP links to Rfam database...	0.64	0.58	0.72	49	37060	31	3	16	12	36
SRP_00127	Fungi_SRP links to Rfam database...	0.61	0.43	0.88	51	72332	10	0	7	3	68
SRP_00128	Bacteria_small_SRP links to Rfam database...	0.82	0.72	0.93	26	6758	4	1	1	2	10
SRP_00130	Archaea_SRP links to Rfam database...	0.76	0.69	0.83	67	49689	25	1	13	11	30
SRP_00132	Bacteria_small_SRP links to Rfam database...	0.73	0.69	0.77	20	4825	9	0	6	3	9
SRP_00134	Bacteria_large_SRP links to Rfam database...	0.70	0.62	0.78	18	5972	13	0	5	8	11
SRP_00136	Fungi_SRP links to Rfam database...	0.61	0.54	0.70	38	44199	24	8	8	8	33
SRP_00137	Bacteria_small_SRP links to Rfam database...	0.66	0.68	0.65	17	4160	10	3	6	1	8
SRP_00141	Bacteria_small_SRP links to Rfam database...	0.78	0.66	0.93	27	6299	3	1	1	1	14
SRP_00142	Archaea_SRP links to Rfam database...	0.89	0.84	0.94	78	45973	13	0	5	8	15
SRP_00143	Archaea_SRP links to Rfam database...	0.81	0.76	0.87	77	49681	21	0	12	9	24
SRP_00144	Archaea_SRP links to Rfam database...	0.89	0.84	0.94	79	46581	14	0	5	9	15
SRP_00145	Bacteria_small_SRP links to Rfam database...	0.81	0.70	0.93	28	6298	2	1	1	0	12
SRP_00146	Bacteria_small_SRP links to Rfam database...	0.83	0.75	0.93	27	5224	3	1	1	1	9
SRP_00148	Fungi_SRP links to Rfam database...	0.73	0.57	0.93	50	50032	10	0	4	6	37
SRP_00152	Plant_SRP links to Rfam database...	0.86	0.79	0.93	81	45666	11	0	6	5	22
SRP_00153	Plant_SRP links to Rfam database...	0.89	0.79	0.99	85	46885	7	0	1	6	22
SRP_00157	Fungi_SRP links to Rfam database...	0.62	0.51	0.76	37	44204	20	3	9	8	35
SRP_00158	Fungi_SRP links to Rfam database...	0.49	0.35	0.68	40	124192	20	7	12	1	75
SRP_00160	Fungi_SRP links to Rfam database...	0.60	0.41	0.90	53	86261	10	1	5	4	77
SRP_00161	Bacteria_small_SRP links to Rfam database...	0.84	0.82	0.86	18	2829	5	0	3	2	4
SRP_00162	Bacteria_small_SRP links to Rfam database...	0.87	0.87	0.87	20	2903	4	0	3	1	3
SRP_00163	Bacteria_small_SRP links to Rfam database...	0.84	0.81	0.88	21	3462	5	0	3	2	5
SRP_00164	Bacteria_small_SRP links to Rfam database...	0.78	0.66	0.92	23	6878	7	1	1	5	12
SRP_00170	Bacteria_small_SRP links to Rfam database...	0.83	0.76	0.90	19	4074	6	1	1	4	6
SRP_00171	Metazoa_SRP links to Rfam database...	0.92	0.85	1.00	75	45376	17	0	0	17	13
SRP_00173	Bacteria_large_SRP links to Rfam database...	0.54	0.29	1.00	26	38200	5	0	0	5	64
SRP_00174	Bacteria_large_SRP links to Rfam database...	0.56	0.31	1.00	27	38754	4	0	0	4	59
SRP_00175	Fungi_SRP links to Rfam database...	0.60	0.48	0.77	40	44499	19	0	12	7	44
SRP_00178	Plant_SRP links to Rfam database...	0.91	0.83	0.99	85	45667	7	0	1	6	17
SRP_00179	Plant_SRP links to Rfam database...	0.89	0.79	1.00	83	45973	9	0	0	9	22
SRP_00181	Plant_SRP links to Rfam database...	0.85	0.78	0.93	80	45970	13	0	6	7	22
SRP_00182	Plant_SRP links to Rfam database...	0.87	0.79	0.95	80	45972	11	0	4	7	21
SRP_00184	Plant_SRP links to Rfam database...	0.85	0.78	0.92	78	45971	15	0	7	8	22
SRP_00188	Plant_SRP links to Rfam database...	0.88	0.85	0.91	67	31051	13	0	7	6	12
SRP_00194	Bacteria_small_SRP links to Rfam database...	0.71	0.71	0.71	15	3219	9	0	6	3	6
SRP_00197	Archaea_SRP links to Rfam database...	0.90	0.83	0.97	84	49368	12	0	3	9	17
SRP_00198	Archaea_SRP links to Rfam database...	0.90	0.83	0.97	86	50951	11	0	3	8	17
SRP_00199	Archaea_SRP links to Rfam database...	0.87	0.81	0.93	85	50949	12	0	6	6	20
SRP_00200	Bacteria_small_SRP links to Rfam database...	0.77	0.67	0.89	24	6876	6	1	2	3	12
SRP_00201	Archaea_SRP links to Rfam database...	0.88	0.80	0.97	89	47803	4	0	3	1	22
SRP_00202	Archaea_SRP links to Rfam database...	0.86	0.76	0.97	89	54193	7	0	3	4	28
SRP_00203	Archaea_SRP links to Rfam database...	0.76	0.70	0.84	73	48741	18	0	14	4	32
SRP_00204	Archaea_SRP links to Rfam database...	0.86	0.79	0.94	81	49055	13	0	5	8	21
SRP_00206	Archaea_SRP links to Rfam database...	0.90	0.82	0.98	89	47804	5	0	2	3	19
SRP_00208	Archaea_SRP links to Rfam database...	0.87	0.79	0.96	80	46582	12	0	3	9	21
SRP_00209	Bacteria_small_SRP links to Rfam database...	0.75	0.74	0.77	20	4630	9	1	5	3	7
SRP_00213	Bacteria_small_SRP links to Rfam database...	0.92	0.92	0.92	23	4161	6	1	1	4	2
SRP_00215	Bacteria_small_SRP links to Rfam database...	0.86	0.84	0.88	21	3216	4	0	3	1	4
SRP_00216	Bacteria_small_SRP links to Rfam database...	0.93	0.93	0.93	25	3376	4	1	1	2	2
SRP_00217	Bacteria_small_SRP links to Rfam database...	0.89	0.88	0.91	21	3298	4	0	2	2	3
SRP_00219	Bacteria_small_SRP links to Rfam database...	0.89	0.87	0.91	20	3299	5	0	2	3	3
SRP_00222	Bacteria_small_SRP links to Rfam database...	0.87	0.84	0.91	21	3058	3	1	1	1	4
SRP_00227	Bacteria_small_SRP links to Rfam database...	0.86	0.81	0.93	25	5124	5	1	1	3	6
SRP_00228	Metazoa_SRP links to Rfam database...	0.92	0.86	0.99	82	45368	10	0	1	9	13
SRP_00229	Bacteria_small_SRP links to Rfam database...	0.41	0.41	0.42	11	5227	19	0	15	4	16
SRP_00230	Fungi_SRP links to Rfam database...	0.75	0.57	0.98	51	39569	6	0	1	5	39
SRP_00231	Bacteria_small_SRP links to Rfam database...	0.88	0.82	0.93	28	5430	2	1	1	0	6
SRP_00233	Bacteria_small_SRP links to Rfam database...	0.87	0.82	0.93	27	5122	3	0	2	1	6
SRP_00234	Bacteria_large_SRP links to Rfam database...	0.55	0.30	1.00	26	36289	5	0	0	5	60
SRP_00239	Plant_SRP links to Rfam database...	0.50	0.48	0.51	45	50315	47	5	38	4	48
SRP_00240	Plant_SRP links to Rfam database...	0.76	0.69	0.83	70	48121	21	1	13	7	32
SRP_00241	Plant_SRP links to Rfam database...	0.53	0.51	0.55	42	45979	47	8	27	12	40
SRP_00243	Bacteria_small_SRP links to Rfam database...	0.88	0.81	0.96	25	5125	5	0	1	4	6
SRP_00244	Bacteria_small_SRP links to Rfam database...	0.74	0.62	0.89	24	6876	5	1	2	2	15
SRP_00247	Metazoa_SRP links to Rfam database...	0.58	0.56	0.59	49	47195	40	6	28	6	38
SRP_00250	Bacteria_small_SRP links to Rfam database...	0.67	0.58	0.78	21	6759	9	1	5	3	15
SRP_00251	Bacteria_small_SRP links to Rfam database...	0.77	0.67	0.89	24	6994	6	1	2	3	12
SRP_00252	Metazoa_SRP links to Rfam database...	0.62	0.58	0.65	52	49061	40	5	23	12	37
SRP_00253	Metazoa_SRP links to Rfam database...	0.62	0.59	0.65	53	49374	38	5	23	10	37
SRP_00254	Fungi_SRP links to Rfam database...	0.32	0.28	0.36	17	32338	35	6	24	5	44
SRP_00255	Archaea_SRP links to Rfam database...	0.78	0.73	0.82	69	47502	25	1	14	10	25
SRP_00257	Metazoa_SRP links to Rfam database...	0.54	0.47	0.62	51	50958	33	5	26	2	57
SRP_00260	Metazoa_SRP links to Rfam database...	0.58	0.52	0.64	52	47814	34	5	24	5	48
SRP_00265	Fungi_SRP links to Rfam database...	0.64	0.55	0.75	40	41275	21	3	10	8	33
SRP_00266	Bacteria_small_SRP links to Rfam database...	0.55	0.55	0.55	16	4627	14	2	11	1	13
SRP_00267	Metazoa_SRP links to Rfam database...	0.91	0.85	0.96	82	44466	8	0	3	5	14
SRP_00268	Bacteria_small_SRP links to Rfam database...	0.91	0.89	0.92	24	4160	5	1	1	3	3
SRP_00269	Bacteria_small_SRP links to Rfam database...	0.68	0.64	0.72	21	5021	9	0	8	1	12
SRP_00270	Bacteria_small_SRP links to Rfam database...	0.86	0.81	0.93	25	4629	5	0	2	3	6
SRP_00271	Bacteria_small_SRP links to Rfam database...	0.89	0.88	0.91	21	3217	3	0	2	1	3
SRP_00273	Bacteria_small_SRP links to Rfam database...	0.79	0.68	0.93	27	6757	3	1	1	1	13
SRP_00274	Bacteria_small_SRP links to Rfam database...	0.81	0.71	0.93	27	6874	3	1	1	1	11
SRP_00276	Archaea_SRP links to Rfam database...	0.89	0.82	0.98	90	50629	6	0	2	4	20
SRP_00278	Archaea_SRP links to Rfam database...	0.83	0.74	0.92	78	45971	10	0	7	3	27
SRP_00282	Metazoa_SRP links to Rfam database...	0.37	0.43	0.33	27	43282	65	17	39	9	36
SRP_00285	Bacteria_small_SRP links to Rfam database...	0.87	0.77	1.00	23	3718	2	0	0	2	7
SRP_00286	Fungi_SRP links to Rfam database...	0.51	0.30	0.87	52	136966	10	0	8	2	122
SRP_00287	Fungi_SRP links to Rfam database...	0.58	0.36	0.94	58	141716	4	0	4	0	104
SRP_00290	Fungi_SRP links to Rfam database...	0.52	0.33	0.80	45	100520	16	0	11	5	90
SRP_00292	Fungi_SRP links to Rfam database...	0.51	0.30	0.88	52	137491	10	0	7	3	121
SRP_00294	Fungi_SRP links to Rfam database...	0.58	0.34	0.98	57	129228	4	0	1	3	110
SRP_00295	Bacteria_small_SRP links to Rfam database...	0.78	0.66	0.93	25	6876	5	1	1	3	13
SRP_00299	Metazoa_SRP links to Rfam database...	0.88	0.81	0.96	80	44170	12	0	3	9	19
SRP_00300	Metazoa_SRP links to Rfam database...	0.92	0.87	0.98	82	44169	10	0	2	8	12
SRP_00301	Fungi_SRP links to Rfam database...	0.68	0.50	0.93	43	32594	11	0	3	8	43
SRP_00302	Fungi_SRP links to Rfam database...	0.60	0.49	0.74	40	41562	20	0	14	6	41
SRP_00303	Bacteria_small_SRP links to Rfam database...	0.68	0.63	0.74	20	6643	10	1	6	3	12
SRP_00308	Bacteria_large_SRP links to Rfam database...	0.55	0.31	1.00	27	36288	4	0	0	4	61
SRP_00310	Bacteria_small_SRP links to Rfam database...	0.82	0.83	0.83	19	2903	5	0	4	1	4
SRP_00312	Bacteria_small_SRP links to Rfam database...	0.91	0.89	0.92	24	4160	5	1	1	3	3
SRP_00315	Bacteria_small_SRP links to Rfam database...	0.81	0.83	0.79	19	2902	5	0	5	0	4
SRP_00317	Metazoa_SRP links to Rfam database...	0.90	0.84	0.98	82	45066	10	0	2	8	16
SRP_00318	Bacteria_small_SRP links to Rfam database...	0.81	0.83	0.79	19	2979	5	0	5	0	4
SRP_00321	Archaea_SRP links to Rfam database...	0.87	0.80	0.96	86	47496	8	1	3	4	22
SRP_00322	Archaea_SRP links to Rfam database...	0.83	0.74	0.93	81	48429	10	0	6	4	28
SRP_00323	Archaea_SRP links to Rfam database...	0.89	0.81	0.98	87	47189	7	0	2	5	20
SRP_00324	Bacteria_small_SRP links to Rfam database...	0.62	0.59	0.65	17	5330	10	1	8	1	12
SRP_00325	Bacteria_small_SRP links to Rfam database...	0.87	0.82	0.93	27	4342	3	0	2	1	6
SRP_00326	Bacteria_small_SRP links to Rfam database...	0.86	0.81	0.93	25	5023	5	0	2	3	6
SRP_00328	Metazoa_SRP links to Rfam database...	0.59	0.54	0.65	46	39550	30	5	20	5	39
SRP_00329	Metazoa_SRP links to Rfam database...	0.71	0.64	0.79	54	39835	24	2	12	10	31
SRP_00330	Archaea_SRP links to Rfam database...	0.82	0.76	0.88	72	50004	21	1	9	11	23
SRP_00331	Metazoa_SRP links to Rfam database...	0.65	0.59	0.73	51	37605	26	2	17	7	36
SRP_00332	Archaea_SRP links to Rfam database...	0.91	0.84	0.98	89	50312	6	0	2	4	17
SRP_00333	Bacteria_small_SRP links to Rfam database...	0.86	0.79	0.93	27	5122	3	0	2	1	7
SRP_00335	Bacteria_large_SRP links to Rfam database...	0.46	0.38	0.56	15	35218	16	7	5	4	24
SRP_00337	Bacteria_large_SRP links to Rfam database...	0.54	0.30	1.00	27	35484	4	0	0	4	64
SRP_00338	Bacteria_small_SRP links to Rfam database...	0.90	0.81	1.00	29	5431	1	0	0	1	7
SRP_00339	Archaea_SRP links to Rfam database...	0.81	0.74	0.88	70	44471	17	1	9	7	24
SRP_00340	Metazoa_SRP links to Rfam database...	0.55	0.52	0.59	43	41255	43	5	25	13	39
SRP_00341	Bacteria_small_SRP links to Rfam database...	0.44	0.42	0.46	13	4725	17	0	15	2	18
SRP_00342	Bacteria_small_SRP links to Rfam database...	0.72	0.72	0.72	18	3980	12	0	7	5	7
SRP_00347	Metazoa_SRP links to Rfam database...	0.90	0.83	0.96	80	46582	12	0	3	9	16
SRP_00350	Bacteria_small_SRP links to Rfam database...	0.84	0.78	0.91	21	3893	4	1	1	2	6
SRP_00356	Bacteria_small_SRP links to Rfam database...	0.80	0.73	0.88	22	5025	6	0	3	3	8
SRP_00357	Bacteria_small_SRP links to Rfam database...	0.82	0.72	0.93	26	5328	4	1	1	2	10
SRP_00358	Bacteria_small_SRP links to Rfam database...	0.81	0.71	0.93	25	6301	5	1	1	3	10
SRP_00361	Plant_SRP links to Rfam database...	0.71	0.67	0.76	60	41826	27	5	14	8	30
SRP_00363	Bacteria_small_SRP links to Rfam database...	0.82	0.77	0.88	23	4727	7	0	3	4	7
SRP_00365	Bacteria_small_SRP links to Rfam database...	0.84	0.78	0.91	21	3380	4	0	2	2	6
SRP_00367	Bacteria_small_SRP links to Rfam database...	0.79	0.69	0.92	24	6760	6	1	1	4	11
SRP_00368	Metazoa_SRP links to Rfam database...	0.93	0.87	1.00	85	43871	7	0	0	7	13
SRP_00369	Bacteria_small_SRP links to Rfam database...	0.78	0.66	0.92	23	5753	7	1	1	5	12
SRP_00371	Fungi_SRP links to Rfam database...	0.63	0.50	0.80	41	36264	17	0	10	7	41
SRP_00382	Fungi_SRP links to Rfam database...	0.60	0.36	0.98	62	141715	1	0	1	0	108
SRP_00383	Bacteria_small_SRP links to Rfam database...	0.92	0.92	0.92	22	3216	6	0	2	4	2
TMR_00173	tmRNA links to Rfam database...	0.12	0.07	0.19	3	42179	23	0	13	10	39
TMR_00357	tmRNA links to Rfam database...	0.37	0.26	0.52	24	82982	24	7	15	2	68
TMR_00601	tmRNA links to Rfam database...	0.51	0.38	0.70	16	58973	33	2	5	26	26
TMR_00696	tmRNA links to Rfam database...	0.44	0.30	0.65	34	85026	19	2	16	1	80

^top

Performance of ProbKnot - scored lower in this pairwise comparison

1. Total counts & total scores for ProbKnot

Total Base Pair Counts
Total TP	41181
Total TN	104865156
Total FP	39735
Total FP CONTRA	5249
Total FP INCONS	28250
Total FP COMP	6236
Total FN	36621

Total Scores
MCC	0.540
Average MCC ± 95% Confidence Intervals	0.600 ± 0.017
Sensitivity	0.529
Positive Predictive Value	0.551
Nr of predictions	706

^top

2. Individual counts for ProbKnot [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00001	RNaseP_arch links to Rfam database...	0.63	0.61	0.65	46	34120	32	4	21	7	29
ASE_00002	RNaseP_arch links to Rfam database...	0.69	0.67	0.71	49	35442	28	4	16	8	24
ASE_00004	RNaseP_bact_a links to Rfam database...	0.70	0.69	0.72	67	47802	28	9	17	2	30
ASE_00005	RNaseP_bact_a links to Rfam database...	0.62	0.56	0.69	65	57876	33	4	25	4	52
ASE_00006	RNaseP_bact_a links to Rfam database...	0.54	0.53	0.55	49	47497	45	10	30	5	44
ASE_00007	RNaseP_bact_a links to Rfam database...	0.72	0.64	0.80	70	59598	25	0	17	8	40
ASE_00009	RNaseP_arch links to Rfam database...	0.38	0.37	0.40	25	26043	38	5	33	0	42
ASE_00010	RNaseP_bact_b links to Rfam database...	0.80	0.78	0.82	64	49692	33	1	13	19	18
ASE_00012	RNaseP_bact_a links to Rfam database...	0.50	0.46	0.56	56	73820	50	3	41	6	67
ASE_00014	RNaseP_arch links to Rfam database...	0.44	0.42	0.46	44	54190	57	2	49	6	62
ASE_00017	RNaseP_nuc links to Rfam database...	0.17	0.20	0.15	13	50951	92	28	48	16	51
ASE_00018	RNaseP_bact_a links to Rfam database...	0.55	0.52	0.59	70	80482	51	1	48	2	64
ASE_00020	RNaseP_bact_a links to Rfam database...	0.59	0.57	0.62	72	73803	51	6	39	6	54
ASE_00021	RNaseP_bact_a links to Rfam database...	0.62	0.56	0.69	90	104066	49	4	36	9	70
ASE_00022	RNaseP_bact_b links to Rfam database...	0.51	0.46	0.56	57	82927	51	5	39	7	67
ASE_00023	RNaseP_bact_a links to Rfam database...	0.67	0.66	0.68	84	84131	45	6	34	5	43
ASE_00025	RNaseP_nuc links to Rfam database...	0.29	0.31	0.27	22	78525	111	9	50	52	49
ASE_00026	RNaseP_bact_a links to Rfam database...	0.55	0.53	0.58	58	59585	47	3	39	5	52
ASE_00028	RNaseP_bact_b links to Rfam database...	0.73	0.70	0.76	88	84550	36	6	22	8	38
ASE_00029	RNaseP_bact_a links to Rfam database...	0.60	0.58	0.61	71	82912	48	13	32	3	51
ASE_00030	RNaseP_bact_a links to Rfam database...	0.66	0.61	0.72	88	85369	38	0	34	4	57
ASE_00031	RNaseP_bact_a links to Rfam database...	0.69	0.67	0.72	84	86619	42	2	31	9	42
ASE_00032	RNaseP_bact_a links to Rfam database...	0.55	0.55	0.56	65	80083	53	12	40	1	53
ASE_00033	RNaseP_bact_a links to Rfam database...	0.37	0.32	0.43	39	64890	53	4	47	2	82
ASE_00035	RNaseP_bact_a links to Rfam database...	0.39	0.37	0.40	44	70391	70	9	56	5	74
ASE_00036	RNaseP_bact_a links to Rfam database...	0.49	0.48	0.49	64	75725	69	9	57	3	68
ASE_00037	RNaseP_bact_a links to Rfam database...	0.41	0.36	0.47	40	59254	50	1	45	4	70
ASE_00038	RNaseP_bact_a links to Rfam database...	0.79	0.75	0.83	76	53536	22	1	15	6	25
ASE_00040	RNaseP_bact_a links to Rfam database...	0.46	0.40	0.53	53	78903	52	4	43	5	80
ASE_00041	RNaseP_bact_a links to Rfam database...	0.44	0.41	0.48	44	57538	53	5	43	5	64
ASE_00042	RNaseP_bact_a links to Rfam database...	0.50	0.46	0.54	66	89978	62	2	54	6	79
ASE_00044	RNaseP_bact_a links to Rfam database...	0.74	0.74	0.74	78	54509	34	6	22	6	27
ASE_00045	RNaseP_bact_b links to Rfam database...	0.67	0.68	0.68	54	47198	34	7	19	8	26
ASE_00046	RNaseP_bact_a links to Rfam database...	0.68	0.64	0.73	66	50313	26	3	21	2	37
ASE_00047	RNaseP_bact_a links to Rfam database...	0.58	0.56	0.61	73	74185	48	2	45	1	57
ASE_00052	RNaseP_bact_a links to Rfam database...	0.60	0.57	0.63	64	61324	43	9	28	6	48
ASE_00053	RNaseP_bact_a links to Rfam database...	0.61	0.59	0.63	78	79278	52	5	40	7	55
ASE_00057	RNaseP_bact_a links to Rfam database...	0.60	0.59	0.62	79	82088	54	8	40	6	55
ASE_00064	RNaseP_bact_a links to Rfam database...	0.38	0.39	0.38	35	45358	67	6	52	9	54
ASE_00066	RNaseP_bact_a links to Rfam database...	0.55	0.51	0.60	66	72280	46	1	43	2	64
ASE_00068	RNaseP_bact_a links to Rfam database...	0.57	0.52	0.64	44	37606	30	2	23	5	41
ASE_00069	RNaseP_bact_a links to Rfam database...	0.65	0.62	0.67	87	82899	46	5	37	4	53
ASE_00074	RNaseP_bact_a links to Rfam database...	0.53	0.51	0.55	61	67785	53	4	46	3	58
ASE_00075	RNaseP_bact_a links to Rfam database...	0.67	0.62	0.72	100	108673	51	3	35	13	62
ASE_00076	RNaseP_bact_a links to Rfam database...	0.51	0.49	0.53	58	68155	57	2	50	5	60
ASE_00077	RNaseP_bact_a links to Rfam database...	0.55	0.53	0.57	46	45069	41	4	31	6	40
ASE_00078	RNaseP_bact_a links to Rfam database...	0.66	0.61	0.71	51	42999	27	2	19	6	32
ASE_00079	RNaseP_bact_a links to Rfam database...	0.51	0.51	0.52	51	55513	49	2	45	2	49
ASE_00080	RNaseP_bact_a links to Rfam database...	0.59	0.54	0.63	67	71525	45	6	33	6	56
ASE_00081	RNaseP_bact_a links to Rfam database...	0.76	0.69	0.84	67	49690	15	4	9	2	30
ASE_00082	RNaseP_bact_a links to Rfam database...	0.79	0.70	0.90	81	70410	24	1	8	15	35
ASE_00083	RNaseP_bact_a links to Rfam database...	0.68	0.66	0.70	73	62377	38	8	23	7	37
ASE_00084	RNaseP_bact_a links to Rfam database...	0.79	0.76	0.82	75	53536	19	4	13	2	24
ASE_00087	RNaseP_bact_a links to Rfam database...	0.71	0.64	0.78	92	88292	33	4	22	7	52
ASE_00090	RNaseP_bact_a links to Rfam database...	0.67	0.67	0.66	68	55508	43	4	31	8	33
ASE_00092	RNaseP_bact_a links to Rfam database...	0.79	0.75	0.83	85	63443	26	3	15	8	28
ASE_00096	RNaseP_bact_a links to Rfam database...	0.48	0.46	0.50	53	63440	55	5	48	2	62
ASE_00099	RNaseP_bact_a links to Rfam database...	0.81	0.72	0.91	86	64525	15	0	9	6	34
ASE_00100	RNaseP_nuc links to Rfam database...	0.31	0.32	0.31	24	82137	109	5	49	55	52
ASE_00102	RNaseP_bact_a links to Rfam database...	0.57	0.50	0.64	83	117726	49	6	40	3	83
ASE_00104	RNaseP_bact_a links to Rfam database...	0.70	0.66	0.76	78	64158	29	2	23	4	41
ASE_00105	RNaseP_bact_a links to Rfam database...	0.44	0.41	0.47	45	64166	59	7	43	9	66
ASE_00107	RNaseP_bact_a links to Rfam database...	0.73	0.71	0.76	90	73035	29	1	27	1	37
ASE_00108	RNaseP_nuc links to Rfam database...	0.47	0.49	0.44	31	46901	67	5	34	28	32
ASE_00111	RNaseP_nuc links to Rfam database...	0.28	0.32	0.25	18	50015	71	21	32	18	39
ASE_00112	RNaseP_bact_a links to Rfam database...	0.78	0.74	0.83	86	75362	25	2	16	7	30
ASE_00114	RNaseP_bact_b links to Rfam database...	0.50	0.44	0.57	34	45391	40	0	26	14	43
ASE_00115	RNaseP_bact_a links to Rfam database...	0.67	0.68	0.66	69	54510	47	7	29	11	32
ASE_00116	RNaseP_arch links to Rfam database...	0.39	0.36	0.43	24	31570	35	4	28	3	42
ASE_00118	RNaseP_bact_a links to Rfam database...	0.47	0.47	0.47	48	60624	58	4	50	4	54
ASE_00119	RNaseP_bact_a links to Rfam database...	0.84	0.81	0.87	87	62735	16	2	11	3	21
ASE_00120	RNaseP_arch links to Rfam database...	0.57	0.55	0.60	52	46884	35	7	28	0	42
ASE_00121	RNaseP_arch links to Rfam database...	0.25	0.25	0.26	23	45061	68	5	61	2	69
ASE_00122	RNaseP_bact_a links to Rfam database...	0.69	0.64	0.76	56	43291	18	0	18	0	32
ASE_00123	RNaseP_bact_a links to Rfam database...	0.53	0.52	0.55	44	38423	42	2	34	6	41
ASE_00125	RNaseP_bact_a links to Rfam database...	0.68	0.64	0.73	56	39263	29	4	17	8	32
ASE_00128	RNaseP_bact_a links to Rfam database...	0.73	0.70	0.75	70	53208	31	3	20	8	30
ASE_00129	RNaseP_bact_a links to Rfam database...	0.73	0.70	0.76	78	62733	31	2	22	7	33
ASE_00131	RNaseP_bact_a links to Rfam database...	0.61	0.59	0.63	50	39261	39	1	28	10	35
ASE_00132	RNaseP_bact_a links to Rfam database...	0.66	0.64	0.67	61	50312	32	8	22	2	34
ASE_00134	RNaseP_bact_a links to Rfam database...	0.42	0.41	0.42	39	50311	58	8	45	5	56
ASE_00135	RNaseP_bact_a links to Rfam database...	0.65	0.64	0.66	70	63084	43	1	35	7	39
ASE_00136	RNaseP_bact_a links to Rfam database...	0.80	0.76	0.84	70	48122	22	0	13	9	22
ASE_00137	RNaseP_bact_a links to Rfam database...	0.69	0.67	0.70	66	48422	33	2	26	5	32
ASE_00138	RNaseP_bact_a links to Rfam database...	0.62	0.60	0.64	49	40393	33	10	18	5	32
ASE_00139	RNaseP_bact_a links to Rfam database...	0.66	0.61	0.72	63	54197	31	1	24	6	41
ASE_00140	RNaseP_bact_a links to Rfam database...	0.67	0.64	0.71	80	70763	36	4	29	3	45
ASE_00142	RNaseP_bact_a links to Rfam database...	0.71	0.66	0.76	80	67056	31	5	20	6	42
ASE_00145	RNaseP_arch links to Rfam database...	0.55	0.54	0.57	60	70019	51	7	39	5	51
ASE_00146	RNaseP_bact_a links to Rfam database...	0.61	0.56	0.66	69	70772	39	6	29	4	55
ASE_00148	RNaseP_arch links to Rfam database...	0.69	0.66	0.73	101	112437	39	4	33	2	53
ASE_00151	RNaseP_bact_a links to Rfam database...	0.73	0.68	0.77	67	51916	27	7	13	7	31
ASE_00153	RNaseP_nuc links to Rfam database...	0.62	0.67	0.58	49	57545	73	9	27	37	24
ASE_00154	RNaseP_arch links to Rfam database...	0.58	0.57	0.59	61	65237	46	4	39	3	46
ASE_00155	RNaseP_arch links to Rfam database...	0.54	0.52	0.56	74	93395	62	10	49	3	68
ASE_00161	RNaseP_bact_b links to Rfam database...	0.34	0.34	0.34	30	53540	61	10	48	3	57
ASE_00163	RNaseP_bact_a links to Rfam database...	0.32	0.31	0.33	29	53214	69	5	53	11	64
ASE_00165	RNaseP_bact_a links to Rfam database...	0.46	0.45	0.47	45	52879	53	3	48	2	56
ASE_00168	RNaseP_nuc links to Rfam database...	0.17	0.22	0.14	14	60624	105	27	61	17	50
ASE_00169	RNaseP_bact_a links to Rfam database...	0.46	0.41	0.52	44	57206	49	4	37	8	63
ASE_00170	RNaseP_bact_a links to Rfam database...	0.71	0.69	0.74	64	48741	31	3	20	8	29
ASE_00171	RNaseP_bact_a links to Rfam database...	0.73	0.70	0.77	66	48430	22	6	14	2	28
ASE_00172	RNaseP_bact_a links to Rfam database...	0.78	0.72	0.84	76	58906	20	2	12	6	30
ASE_00174	RNaseP_bact_a links to Rfam database...	0.50	0.50	0.51	54	60970	54	8	43	3	55
ASE_00175	RNaseP_bact_a links to Rfam database...	0.67	0.61	0.73	65	59942	31	2	22	7	42
ASE_00176	RNaseP_bact_a links to Rfam database...	0.60	0.54	0.66	59	59942	36	4	26	6	51
ASE_00179	RNaseP_bact_a links to Rfam database...	0.57	0.55	0.59	46	44175	33	5	27	1	38
ASE_00180	RNaseP_bact_a links to Rfam database...	0.70	0.66	0.73	66	51270	30	8	16	6	34
ASE_00181	RNaseP_bact_a links to Rfam database...	0.71	0.65	0.78	69	57541	26	4	16	6	37
ASE_00182	RNaseP_bact_a links to Rfam database...	0.59	0.57	0.61	77	84129	53	5	44	4	59
ASE_00184	RNaseP_bact_a links to Rfam database...	0.70	0.70	0.70	71	54513	37	5	26	6	31
ASE_00185	RNaseP_bact_a links to Rfam database...	0.76	0.72	0.81	92	73422	29	1	21	7	36
ASE_00186	RNaseP_bact_a links to Rfam database...	0.70	0.68	0.72	90	78878	44	3	32	9	42
ASE_00187	RNaseP_arch links to Rfam database...	0.41	0.39	0.43	45	68531	66	7	52	7	70
ASE_00189	RNaseP_bact_b links to Rfam database...	0.66	0.65	0.67	66	63091	37	7	26	4	36
ASE_00190	RNaseP_bact_b links to Rfam database...	0.62	0.61	0.63	55	45364	35	4	28	3	35
ASE_00191	RNaseP_arch links to Rfam database...	0.53	0.51	0.56	31	29591	30	2	22	6	30
ASE_00192	RNaseP_bact_b links to Rfam database...	0.51	0.50	0.52	67	84538	67	10	51	6	66
ASE_00194	RNaseP_bact_b links to Rfam database...	0.49	0.46	0.53	55	73432	55	6	43	6	64
ASE_00196	RNaseP_arch links to Rfam database...	0.79	0.79	0.79	59	31551	23	2	14	7	16
ASE_00197	RNaseP_bact_a links to Rfam database...	0.59	0.56	0.63	81	89125	55	3	44	8	64
ASE_00203	RNaseP_bact_a links to Rfam database...	0.76	0.71	0.82	68	46582	21	4	11	6	28
ASE_00204	RNaseP_bact_b links to Rfam database...	0.69	0.66	0.73	74	67794	36	5	23	8	38
ASE_00205	RNaseP_arch links to Rfam database...	0.62	0.62	0.62	56	45965	39	6	29	4	34
ASE_00209	RNaseP_arch links to Rfam database...	0.43	0.40	0.46	35	42995	41	6	35	0	53
ASE_00210	RNaseP_arch links to Rfam database...	0.64	0.66	0.62	43	27192	28	6	20	2	22
ASE_00212	RNaseP_bact_a links to Rfam database...	0.64	0.61	0.68	90	93828	49	5	38	6	58
ASE_00213	RNaseP_arch links to Rfam database...	0.71	0.70	0.73	46	27198	19	3	14	2	20
ASE_00214	RNaseP_bact_a links to Rfam database...	0.79	0.79	0.79	81	56178	31	4	17	10	22
ASE_00215	RNaseP_bact_a links to Rfam database...	0.60	0.58	0.63	57	48426	35	5	28	2	42
ASE_00216	RNaseP_bact_a links to Rfam database...	0.48	0.45	0.52	37	39269	35	12	22	1	45
ASE_00217	RNaseP_bact_a links to Rfam database...	0.35	0.32	0.38	29	40394	53	5	42	6	61
ASE_00221	RNaseP_bact_a links to Rfam database...	0.65	0.56	0.75	66	64532	28	0	22	6	51
ASE_00222	RNaseP_arch links to Rfam database...	0.55	0.51	0.59	80	111965	58	5	51	2	77
ASE_00227	RNaseP_bact_a links to Rfam database...	0.55	0.54	0.56	72	78875	56	7	49	0	61
ASE_00228	RNaseP_bact_a links to Rfam database...	0.57	0.55	0.59	47	46892	33	9	23	1	39
ASE_00229	RNaseP_bact_a links to Rfam database...	0.69	0.66	0.72	57	42407	29	4	18	7	30
ASE_00231	RNaseP_bact_a links to Rfam database...	0.62	0.60	0.63	58	47803	38	6	28	4	38
ASE_00232	RNaseP_bact_a links to Rfam database...	0.66	0.65	0.67	55	38421	31	8	19	4	29
ASE_00234	RNaseP_bact_a links to Rfam database...	0.59	0.55	0.63	71	75354	48	3	38	7	58
ASE_00237	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	45678	92	28	47	17	56
ASE_00238	RNaseP_bact_a links to Rfam database...	0.72	0.65	0.80	74	64168	26	2	17	7	40
ASE_00240	RNaseP_bact_a links to Rfam database...	0.63	0.60	0.66	56	46580	37	1	28	8	37
ASE_00241	RNaseP_bact_a links to Rfam database...	0.63	0.60	0.68	52	43879	32	1	24	7	35
ASE_00242	RNaseP_bact_a links to Rfam database...	0.64	0.60	0.69	67	60978	32	3	27	2	45
ASE_00245	RNaseP_nuc links to Rfam database...	0.89	0.83	0.94	65	55209	43	0	4	39	13
ASE_00246	RNaseP_nuc links to Rfam database...	0.39	0.40	0.37	27	48132	68	12	34	22	40
ASE_00247	RNaseP_nuc links to Rfam database...	0.63	0.63	0.63	40	54222	66	7	16	43	24
ASE_00248	RNaseP_bact_a links to Rfam database...	0.40	0.37	0.44	42	62386	55	4	49	2	72
ASE_00250	RNaseP_bact_a links to Rfam database...	0.62	0.59	0.66	77	78887	44	8	31	5	54
ASE_00251	RNaseP_nuc links to Rfam database...	1.00	1.00	1.00	43	17723	24	0	0	24	0
ASE_00252	RNaseP_bact_a links to Rfam database...	0.60	0.58	0.62	97	115283	69	2	58	9	71
ASE_00254	RNaseP_bact_a links to Rfam database...	0.37	0.33	0.42	27	36792	44	3	34	7	55
ASE_00255	RNaseP_bact_a links to Rfam database...	0.55	0.54	0.56	70	74565	59	5	51	3	60
ASE_00257	RNaseP_bact_a links to Rfam database...	0.66	0.63	0.70	61	50953	33	1	25	7	36
ASE_00258	RNaseP_nuc links to Rfam database...	0.80	0.85	0.75	46	26735	23	9	6	8	8
ASE_00263	RNaseP_bact_a links to Rfam database...	0.70	0.69	0.71	83	70383	40	4	30	6	37
ASE_00264	RNaseP_nuc links to Rfam database...	0.62	0.59	0.66	59	49051	49	1	30	18	41
ASE_00267	RNaseP_bact_a links to Rfam database...	0.64	0.59	0.69	52	45075	34	4	19	11	36
ASE_00270	RNaseP_bact_a links to Rfam database...	0.80	0.79	0.82	101	72267	29	1	21	7	27
ASE_00274	RNaseP_bact_a links to Rfam database...	0.64	0.56	0.73	58	55531	25	5	17	3	45
ASE_00277	RNaseP_bact_a links to Rfam database...	0.44	0.44	0.44	40	48114	53	9	42	2	51
ASE_00279	RNaseP_bact_a links to Rfam database...	0.50	0.49	0.52	49	53206	50	6	40	4	52
ASE_00280	RNaseP_bact_a links to Rfam database...	0.50	0.47	0.53	46	51917	45	10	30	5	52
ASE_00281	RNaseP_bact_a links to Rfam database...	0.73	0.67	0.80	59	44477	22	0	15	7	29
ASE_00282	RNaseP_bact_a links to Rfam database...	0.45	0.44	0.47	56	77695	67	5	59	3	71
ASE_00283	RNaseP_bact_a links to Rfam database...	0.76	0.74	0.79	79	61676	28	4	17	7	28
ASE_00284	RNaseP_bact_a links to Rfam database...	0.68	0.67	0.70	72	58208	36	5	26	5	36
ASE_00285	RNaseP_bact_a links to Rfam database...	0.78	0.71	0.85	87	68904	26	4	11	11	35
ASE_00286	RNaseP_bact_a links to Rfam database...	0.40	0.39	0.40	36	46576	62	3	50	9	56
ASE_00287	RNaseP_bact_a links to Rfam database...	0.73	0.70	0.76	72	54851	26	3	20	3	31
ASE_00288	RNaseP_bact_a links to Rfam database...	0.30	0.29	0.30	27	45967	65	8	54	3	66
ASE_00289	RNaseP_bact_a links to Rfam database...	0.63	0.57	0.70	89	100898	43	7	31	5	68
ASE_00292	RNaseP_bact_a links to Rfam database...	0.48	0.43	0.54	60	81699	54	2	49	3	78
ASE_00294	RNaseP_bact_a links to Rfam database...	0.75	0.67	0.85	115	114345	27	2	19	6	56
ASE_00295	RNaseP_bact_a links to Rfam database...	0.61	0.60	0.62	78	73795	50	7	40	3	53
ASE_00296	RNaseP_bact_a links to Rfam database...	0.43	0.39	0.46	57	91683	70	6	60	4	88
ASE_00297	RNaseP_bact_a links to Rfam database...	0.76	0.72	0.79	71	52885	20	3	16	1	27
ASE_00298	RNaseP_bact_a links to Rfam database...	0.50	0.48	0.52	54	67424	55	2	48	5	59
ASE_00299	RNaseP_bact_a links to Rfam database...	0.53	0.54	0.53	54	49353	54	6	42	6	46
ASE_00303	RNaseP_nuc links to Rfam database...	0.61	0.63	0.59	60	67794	52	13	29	10	35
ASE_00305	RNaseP_bact_b links to Rfam database...	0.66	0.65	0.68	55	54534	36	5	21	10	30
ASE_00313	RNaseP_nuc links to Rfam database...	0.65	0.65	0.64	58	62391	51	10	22	19	31
ASE_00316	RNaseP_nuc links to Rfam database...	0.57	0.54	0.60	53	107791	73	12	24	37	45
ASE_00318	RNaseP_bact_b links to Rfam database...	0.63	0.64	0.63	75	80081	49	15	29	5	43
ASE_00321	RNaseP_bact_b links to Rfam database...	0.72	0.68	0.76	60	54536	24	4	15	5	28
ASE_00327	RNaseP_nuc links to Rfam database...	0.81	0.79	0.83	70	57207	35	4	10	21	19
ASE_00328	RNaseP_bact_b links to Rfam database...	0.68	0.66	0.70	74	72665	43	7	25	11	38
ASE_00329	RNaseP_nuc links to Rfam database...	0.63	0.70	0.57	44	40678	60	11	22	27	19
ASE_00330	RNaseP_nuc links to Rfam database...	0.65	0.69	0.62	62	56180	55	9	29	17	28
ASE_00332	RNaseP_bact_a links to Rfam database...	0.51	0.49	0.53	68	81681	65	6	55	4	70
ASE_00335	RNaseP_bact_b links to Rfam database...	0.60	0.59	0.61	69	75353	49	8	36	5	47
ASE_00337	RNaseP_nuc links to Rfam database...	0.38	0.41	0.36	29	39260	66	5	46	15	42
ASE_00338	RNaseP_nuc links to Rfam database...	0.64	0.60	0.68	59	66343	49	3	25	21	39
ASE_00339	RNaseP_bact_a links to Rfam database...	0.67	0.61	0.74	72	80103	34	1	24	9	47
ASE_00340	RNaseP_bact_a links to Rfam database...	0.72	0.72	0.72	61	45971	30	7	17	6	24
ASE_00342	RNaseP_bact_a links to Rfam database...	0.62	0.57	0.68	65	62385	34	2	29	3	50
ASE_00343	RNaseP_bact_a links to Rfam database...	0.70	0.69	0.71	78	83326	45	7	25	13	35
ASE_00346	RNaseP_arch links to Rfam database...	0.46	0.44	0.48	43	48115	54	4	43	7	54
ASE_00353	RNaseP_bact_a links to Rfam database...	0.60	0.58	0.63	62	57871	41	4	33	4	45
ASE_00359	RNaseP_arch links to Rfam database...	0.24	0.24	0.24	19	42698	61	7	54	0	61
ASE_00360	RNaseP_arch links to Rfam database...	0.32	0.31	0.33	20	29343	40	8	32	0	45
ASE_00361	RNaseP_bact_a links to Rfam database...	0.54	0.54	0.54	69	75338	62	13	46	3	58
ASE_00362	RNaseP_bact_a links to Rfam database...	0.58	0.58	0.58	53	48113	41	2	37	2	38
ASE_00363	RNaseP_bact_a links to Rfam database...	0.57	0.55	0.60	52	51273	44	2	33	9	42
ASE_00364	RNaseP_bact_a links to Rfam database...	0.73	0.70	0.76	74	54188	28	2	21	5	31
ASE_00366	RNaseP_bact_a links to Rfam database...	0.40	0.42	0.39	41	58547	67	11	54	2	57
ASE_00367	RNaseP_bact_a links to Rfam database...	0.57	0.55	0.60	47	42993	40	5	26	9	39
ASE_00369	RNaseP_bact_a links to Rfam database...	0.64	0.59	0.69	63	55854	30	1	27	2	44
ASE_00370	RNaseP_bact_a links to Rfam database...	0.73	0.70	0.77	59	41828	26	1	17	8	25
ASE_00372	RNaseP_bact_a links to Rfam database...	0.67	0.65	0.68	65	51908	37	7	23	7	35
ASE_00374	RNaseP_bact_a links to Rfam database...	0.72	0.72	0.72	63	44762	28	3	22	3	25
ASE_00375	RNaseP_bact_a links to Rfam database...	0.82	0.77	0.87	85	60280	22	1	12	9	25
ASE_00376	RNaseP_bact_a links to Rfam database...	0.65	0.65	0.65	68	56849	41	5	31	5	37
ASE_00377	RNaseP_bact_a links to Rfam database...	0.75	0.74	0.76	79	57526	35	4	21	10	28
ASE_00379	RNaseP_bact_a links to Rfam database...	0.60	0.57	0.63	51	45975	41	4	26	11	38
ASE_00380	RNaseP_bact_a links to Rfam database...	0.68	0.67	0.70	66	54852	32	6	22	4	33
ASE_00382	RNaseP_bact_a links to Rfam database...	0.69	0.67	0.71	56	41826	29	6	17	6	28
ASE_00383	RNaseP_bact_a links to Rfam database...	0.51	0.46	0.57	48	54531	43	5	31	7	57
ASE_00384	RNaseP_bact_a links to Rfam database...	0.61	0.59	0.63	54	48430	38	2	30	6	38
ASE_00385	RNaseP_bact_a links to Rfam database...	0.51	0.52	0.51	42	41822	46	13	28	5	39
ASE_00386	RNaseP_bact_a links to Rfam database...	0.54	0.54	0.54	52	50307	48	7	37	4	44
ASE_00387	RNaseP_bact_a links to Rfam database...	0.68	0.65	0.72	68	55850	33	1	26	6	36
ASE_00388	RNaseP_bact_a links to Rfam database...	0.63	0.58	0.68	52	45676	37	1	24	12	37
ASE_00390	RNaseP_bact_a links to Rfam database...	0.61	0.60	0.63	51	42114	41	0	30	11	34
ASE_00393	RNaseP_bact_a links to Rfam database...	0.47	0.42	0.53	39	47821	43	2	33	8	54
ASE_00394	RNaseP_bact_a links to Rfam database...	0.80	0.77	0.82	72	46883	20	3	13	4	21
ASE_00395	RNaseP_bact_a links to Rfam database...	0.70	0.65	0.74	55	41542	30	1	18	11	29
ASE_00396	RNaseP_bact_a links to Rfam database...	0.54	0.52	0.57	43	41540	38	2	31	5	40
ASE_00397	RNaseP_bact_a links to Rfam database...	0.59	0.58	0.61	61	54515	47	6	33	8	44
ASE_00398	RNaseP_bact_a links to Rfam database...	0.61	0.56	0.66	58	55857	39	1	29	9	46
ASE_00400	RNaseP_bact_a links to Rfam database...	0.66	0.64	0.68	68	57870	38	1	31	6	38
ASE_00401	RNaseP_bact_a links to Rfam database...	0.64	0.63	0.65	80	76904	46	6	38	2	46
ASE_00402	RNaseP_bact_a links to Rfam database...	0.73	0.67	0.79	57	42414	18	2	13	3	28
ASE_00403	RNaseP_bact_a links to Rfam database...	0.45	0.42	0.47	45	55850	57	5	45	7	62
ASE_00404	RNaseP_bact_a links to Rfam database...	0.53	0.52	0.54	44	42990	46	6	31	9	41
ASE_00406	RNaseP_bact_a links to Rfam database...	0.80	0.77	0.83	72	48741	26	3	12	11	22
ASE_00411	RNaseP_bact_a links to Rfam database...	0.46	0.46	0.47	41	49367	54	6	41	7	48
ASE_00412	RNaseP_bact_a links to Rfam database...	0.49	0.48	0.52	50	58214	51	8	39	4	55
ASE_00413	RNaseP_bact_a links to Rfam database...	0.64	0.67	0.62	54	44464	34	11	22	1	27
ASE_00414	RNaseP_bact_a links to Rfam database...	0.47	0.45	0.49	43	46273	51	2	42	7	52
ASE_00415	RNaseP_bact_a links to Rfam database...	0.68	0.66	0.69	68	54848	33	5	25	3	35
ASE_00416	RNaseP_bact_a links to Rfam database...	0.70	0.67	0.73	85	77305	41	2	29	10	42
ASE_00417	RNaseP_arch links to Rfam database...	0.36	0.37	0.35	37	54509	72	11	58	3	63
ASE_00418	RNaseP_arch links to Rfam database...	0.19	0.20	0.19	15	38700	70	8	58	4	60
ASE_00419	RNaseP_bact_a links to Rfam database...	0.84	0.81	0.88	83	54852	14	3	8	3	20
ASE_00420	RNaseP_nuc links to Rfam database...	0.79	0.81	0.77	51	43299	44	6	9	29	12
ASE_00422	RNaseP_bact_a links to Rfam database...	0.79	0.77	0.81	72	46882	24	3	14	7	22
ASE_00423	RNaseP_bact_a links to Rfam database...	0.61	0.61	0.60	67	56841	46	10	35	1	42
ASE_00426	RNaseP_bact_a links to Rfam database...	0.44	0.42	0.47	45	60979	51	3	48	0	63
ASE_00427	RNaseP_nuc links to Rfam database...	0.13	0.17	0.10	8	40677	84	26	44	14	38
ASE_00428	RNaseP_bact_a links to Rfam database...	0.78	0.75	0.82	94	76521	29	4	17	8	31
ASE_00430	RNaseP_bact_a links to Rfam database...	0.77	0.74	0.81	72	46882	24	3	14	7	25
ASE_00431	RNaseP_bact_a links to Rfam database...	0.64	0.58	0.71	55	46282	32	2	21	9	40
ASE_00434	RNaseP_bact_b links to Rfam database...	0.62	0.61	0.64	67	68160	49	5	33	11	43
ASE_00437	RNaseP_bact_a links to Rfam database...	0.43	0.41	0.47	55	79283	69	1	62	6	80
ASE_00438	RNaseP_bact_a links to Rfam database...	0.48	0.45	0.53	52	65967	47	3	44	0	64
ASE_00441	RNaseP_bact_a links to Rfam database...	0.78	0.74	0.82	83	64160	27	2	16	9	29
ASE_00443	RNaseP_nuc links to Rfam database...	0.98	0.98	0.98	49	26746	33	0	1	32	1
ASE_00447	RNaseP_bact_a links to Rfam database...	0.77	0.72	0.82	84	60275	24	2	17	5	32
ASE_00448	RNaseP_bact_a links to Rfam database...	0.22	0.23	0.22	26	64143	99	8	84	7	86
ASE_00451	RNaseP_bact_a links to Rfam database...	0.62	0.60	0.65	75	70760	48	3	38	7	50
ASE_00454	RNaseP_nuc links to Rfam database...	0.56	0.56	0.57	35	43304	54	1	25	28	28
CRW_00013	Intron_gpI links to Rfam database...	0.39	0.37	0.42	43	103637	84	9	51	24	72
CRW_00016	Intron_gpI links to Rfam database...	0.48	0.45	0.50	54	77314	68	6	47	15	66
CRW_00024	SSU_rRNA_archaea links to Rfam database...	0.69	0.68	0.70	312	1085154	184	22	113	49	146
CRW_00034	SSU_rRNA_bacteria links to Rfam database...	0.65	0.64	0.66	305	1141852	193	33	126	34	169
CRW_00048	SSU_rRNA_bacteria links to Rfam database...	0.48	0.46	0.51	215	1170796	225	31	173	21	255
CRW_00054	SSU_rRNA_bacteria links to Rfam database...	0.42	0.41	0.43	186	1107383	267	27	220	20	270
CRW_00059	SSU_rRNA_bacteria links to Rfam database...	0.50	0.48	0.52	225	1172311	230	27	183	20	248
CRW_00061	SSU_rRNA_bacteria links to Rfam database...	0.43	0.42	0.44	201	1181493	284	39	220	25	275
CRW_00068	SSU_rRNA_bacteria links to Rfam database...	0.45	0.43	0.47	198	1108880	243	33	194	16	259
CRW_00096	SSU_rRNA_bacteria links to Rfam database...	0.49	0.48	0.50	222	1178435	246	25	198	23	243
CRW_00140	SSU_rRNA_bacteria links to Rfam database...	0.41	0.40	0.41	185	1135829	286	31	233	22	278
CRW_00141	SSU_rRNA_bacteria links to Rfam database...	0.54	0.52	0.55	248	1201576	229	30	171	28	228
CRW_00150	SSU_rRNA_bacteria links to Rfam database...	0.44	0.42	0.45	198	1152481	263	27	215	21	268
CRW_00152	SSU_rRNA_bacteria links to Rfam database...	0.58	0.56	0.60	265	1179971	202	39	141	22	206
CRW_00166	SSU_rRNA_bacteria links to Rfam database...	0.42	0.41	0.44	190	1190764	263	30	212	21	278
CRW_00173	SSU_rRNA_bacteria links to Rfam database...	0.27	0.26	0.27	115	1082237	320	30	274	16	330
CRW_00177	SSU_rRNA_bacteria links to Rfam database...	0.48	0.46	0.51	219	1178447	241	25	189	27	254
CRW_00196	SSU_rRNA_bacteria links to Rfam database...	0.49	0.48	0.50	229	1207778	250	33	195	22	246
CRW_00230	SSU_rRNA_bacteria links to Rfam database...	0.56	0.53	0.59	255	1198497	206	24	150	32	223
CRW_00245	SSU_rRNA_bacteria links to Rfam database...	0.40	0.40	0.41	179	1105891	278	32	226	20	274
CRW_00248	SSU_rRNA_bacteria links to Rfam database...	0.52	0.52	0.53	250	1218666	257	31	194	32	234
CRW_00250	SSU_rRNA_bacteria links to Rfam database...	0.50	0.50	0.50	238	1198447	265	46	195	24	240
CRW_00256	SSU_rRNA_bacteria links to Rfam database...	0.40	0.40	0.41	185	1192284	296	39	232	25	283
CRW_00270	SSU_rRNA_bacteria links to Rfam database...	0.53	0.53	0.54	241	1111840	228	28	177	23	214
CRW_00271	SSU_rRNA_bacteria links to Rfam database...	0.35	0.33	0.36	154	1122325	292	38	234	20	308
CRW_00273	SSU_rRNA_bacteria links to Rfam database...	0.43	0.41	0.45	183	1085197	235	32	189	14	263
CRW_00275	SSU_rRNA_bacteria links to Rfam database...	0.60	0.58	0.61	266	1114835	193	26	144	23	191
CRW_00277	SSU_rRNA_bacteria links to Rfam database...	0.36	0.35	0.37	157	1110374	282	40	224	18	296
CRW_00278	SSU_rRNA_bacteria links to Rfam database...	0.38	0.36	0.40	162	1129847	266	32	215	19	288
CRW_00279	SSU_rRNA_bacteria links to Rfam database...	0.54	0.52	0.57	243	1179987	211	33	153	25	221
CRW_00280	SSU_rRNA_bacteria links to Rfam database...	0.36	0.35	0.38	158	1117841	277	40	221	16	295
CRW_00281	SSU_rRNA_bacteria links to Rfam database...	0.58	0.56	0.59	260	1144904	208	25	152	31	204
CRW_00283	SSU_rRNA_bacteria links to Rfam database...	0.37	0.38	0.37	162	1015591	302	49	223	30	270
CRW_00284	SSU_rRNA_bacteria links to Rfam database...	0.37	0.35	0.40	159	1131362	267	28	211	28	297
CRW_00285	SSU_rRNA_bacteria links to Rfam database...	0.55	0.53	0.56	244	1117827	214	31	158	25	214
CRW_00289	SSU_rRNA_bacteria links to Rfam database...	0.49	0.48	0.50	228	1189195	264	43	187	34	248
CRW_00292	SSU_rRNA_bacteria links to Rfam database...	0.35	0.34	0.36	157	1123815	302	48	230	24	304
CRW_00306	SSU_rRNA_eukarya links to Rfam database...	0.18	0.19	0.18	86	1445359	473	69	336	68	376
CRW_00366	SSU_rRNA_eukarya links to Rfam database...	0.26	0.27	0.25	130	1579227	438	85	311	42	352
CRW_00371	SSU_rRNA_eukarya links to Rfam database...	0.39	0.39	0.40	191	1611430	345	53	236	56	305
CRW_00379	SSU_rRNA_eukarya links to Rfam database...	0.42	0.43	0.41	229	2126396	414	75	253	86	305
CRW_00411	SSU_rRNA_eukarya links to Rfam database...	0.34	0.35	0.33	172	1614983	394	81	267	46	324
CRW_00414	SSU_rRNA_eukarya links to Rfam database...	0.29	0.30	0.29	149	1665709	429	66	301	62	346
CRW_00466	SSU_rRNA_bacteria links to Rfam database...	0.60	0.59	0.60	272	1116312	211	33	148	30	186
CRW_00589	SSU_rRNA_bacteria links to Rfam database...	0.31	0.30	0.32	135	1094033	316	46	246	24	310
CRW_00590	SSU_rRNA_bacteria links to Rfam database...	0.41	0.39	0.43	176	1119350	259	29	201	29	276
CRW_00591	SSU_rRNA_bacteria links to Rfam database...	0.44	0.44	0.44	198	1098453	275	46	206	23	248
CRW_00610	Intron_gpI links to Rfam database...	0.44	0.44	0.43	36	36232	49	8	39	2	45
CRW_00613	Intron_gpI links to Rfam database...	0.84	0.82	0.86	64	34906	18	0	10	8	14
CRW_00614	Intron_gpI links to Rfam database...	0.14	0.16	0.12	9	121698	120	17	47	56	48
CRW_00618	Intron_gpI links to Rfam database...	0.18	0.20	0.16	12	56207	83	15	46	22	49
CRW_00619	Intron_gpI links to Rfam database...	0.35	0.37	0.33	27	164943	151	8	47	96	46
CRW_00620	Intron_gpI links to Rfam database...	0.18	0.21	0.15	13	150891	156	19	52	85	50
CRW_00621	Intron_gpI links to Rfam database...	0.35	0.34	0.36	24	153114	139	8	35	96	47
CRW_00623	Intron_gpI links to Rfam database...	0.31	0.29	0.32	24	129721	122	7	43	72	59
CRW_00633	Intron_gpI links to Rfam database...	0.62	0.59	0.65	63	63449	38	9	25	4	43
CRW_00634	Intron_gpI links to Rfam database...	0.50	0.49	0.52	46	64531	48	10	33	5	48
CRW_00670	Intron_gpI links to Rfam database...	0.57	0.58	0.56	70	70001	57	11	43	3	50
CRW_00671	Intron_gpI links to Rfam database...	0.79	0.77	0.80	90	62723	28	6	16	6	27
CRW_00672	Intron_gpI links to Rfam database...	0.76	0.78	0.74	87	72272	41	10	21	10	24
CRW_00674	Intron_gpI links to Rfam database...	0.68	0.67	0.70	83	83317	41	8	28	5	41
CRW_00676	Intron_gpI links to Rfam database...	0.59	0.58	0.60	67	93416	63	8	37	18	48
CRW_00692	Intron_gpI links to Rfam database...	0.33	0.34	0.32	31	68537	84	18	49	17	59
CRW_00759	SSU_rRNA_eukarya links to Rfam database...	0.31	0.31	0.30	151	1636639	423	69	286	68	330
CRW_00763	SSU_rRNA_bacteria links to Rfam database...	0.20	0.20	0.20	90	1215575	395	47	308	40	356
CRW_00772	SSU_rRNA_bacteria links to Rfam database...	0.22	0.22	0.22	90	945593	335	34	283	18	314
CRW_00778	SSU_rRNA_bacteria links to Rfam database...	0.29	0.29	0.28	112	1201627	335	46	240	49	272
CRW_00789	SSU_rRNA_bacteria links to Rfam database...	0.36	0.36	0.37	163	1137340	312	43	240	29	284
CRW_00795	SSU_rRNA_bacteria links to Rfam database...	0.34	0.34	0.33	135	1152513	326	45	228	53	259
CRW_00800	SSU_rRNA_eukarya links to Rfam database...	0.52	0.49	0.54	231	1401550	267	31	163	73	239
CRW_00849	SSU_rRNA_bacteria links to Rfam database...	0.57	0.56	0.58	263	1117810	226	18	169	39	207
CRW_00997	SSU_rRNA_bacteria links to Rfam database...	0.44	0.42	0.46	197	1135851	249	39	191	19	267
CRW_01153	SSU_rRNA_eukarya links to Rfam database...	0.29	0.30	0.28	150	1605991	434	63	324	47	353
CRW_01171	SSU_rRNA_eukarya links to Rfam database...	0.33	0.33	0.33	168	1593497	395	62	278	55	338
CRW_01343	SSU_rRNA_archaea links to Rfam database...	0.37	0.36	0.38	158	977480	279	40	223	16	276
PDB_00005	Tymo_tRNA-like links to Rfam database...	0.78	0.79	0.79	11	932	3	0	3	0	3
PDB_00012	mir-TAR links to Rfam database...	1.00	1.00	1.00	7	399	4	0	0	4	0
PDB_00213	Gammaretro_CES links to Rfam database...	0.94	0.88	1.00	36	5014	0	0	0	0	5
PDB_00553	mir-TAR links to Rfam database...	1.00	1.00	1.00	11	454	1	0	0	1	0
PDB_00703	SSU_rRNA_bacteria links to Rfam database...	0.56	0.51	0.61	253	1073430	187	22	140	25	242
PDB_00716	HDV_ribozyme links to Rfam database...	-0.01	0.00	0.00	0	2680	22	0	21	1	23
PDB_00741	Entero_5_CRE links to Rfam database...	0.87	0.76	1.00	13	690	0	0	0	0	4
PDB_00810	s2m links to Rfam database...	0.76	0.59	1.00	10	1071	0	0	0	0	7
PDB_00827	Intron_gpI links to Rfam database...	0.76	0.67	0.86	54	26965	11	1	8	2	27
PDB_00828	Purine links to Rfam database...	0.86	0.78	0.95	21	2463	1	0	1	0	6
PDB_00829	Purine links to Rfam database...	0.86	0.75	1.00	18	2260	0	0	0	0	6
PDB_00854	SSU_rRNA_bacteria links to Rfam database...	0.56	0.54	0.58	288	1500280	260	33	177	50	247
PDB_00876	HIV_FE links to Rfam database...	0.97	0.95	1.00	19	971	0	0	0	0	1
PDB_00919	RNaseP_bact_a links to Rfam database...	0.52	0.48	0.57	49	44167	39	5	32	2	54
PDB_01001	tRNA links to Rfam database...	0.52	0.56	0.50	10	2125	10	3	7	0	8
PDB_01020	Purine links to Rfam database...	0.86	0.74	1.00	17	2261	1	0	0	1	6
PDB_01050	UnaL2 links to Rfam database...	0.88	0.85	0.92	11	618	3	0	1	2	2
PDB_01051	Telomerase-cil links to Rfam database...	0.88	0.85	0.92	11	891	5	0	1	4	2
PDB_01073	SAM links to Rfam database...	0.86	0.74	1.00	25	4346	1	0	0	1	9
PDB_01088	SSU_rRNA_bacteria links to Rfam database...	0.33	0.32	0.34	175	1470956	367	49	290	28	372
PDB_01092	glmS links to Rfam database...	0.73	0.63	0.85	33	10114	8	1	5	2	19
PDB_01103	SSU_rRNA_bacteria links to Rfam database...	0.61	0.58	0.64	324	1606022	220	26	156	38	238
PDB_01105	SSU_rRNA_bacteria links to Rfam database...	0.57	0.53	0.62	286	1433506	213	32	147	34	254
PDB_01114	TPP links to Rfam database...	0.50	0.41	0.61	11	2832	7	0	7	0	16
PDB_01120	SSU_rRNA_bacteria links to Rfam database...	0.43	0.40	0.47	211	1204677	265	29	211	25	316
PDB_01152	HIV_FS2 links to Rfam database...	0.88	0.79	1.00	11	550	0	0	0	0	3
PDB_01236	ykoK links to Rfam database...	0.74	0.70	0.78	38	11579	14	0	11	3	16
PDB_01273	SSU_rRNA_bacteria links to Rfam database...	0.43	0.41	0.45	200	1117813	276	33	214	29	291
RFA_00389	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	3	0	0	3	0
RFA_00390	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	3	0	0	3	0
RFA_00391	Hammerhead_3 links to Rfam database...	0.93	0.87	1.00	13	1418	2	0	0	2	2
RFA_00396	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	2	0	0	2	1
RFA_00402	Hammerhead_3 links to Rfam database...	0.33	0.33	0.33	5	1416	11	0	10	1	10
RFA_00409	Hammerhead_3 links to Rfam database...	0.67	0.60	0.75	9	1419	5	1	2	2	6
RFA_00416	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1470	3	0	0	3	0
RFA_00425	Hammerhead_3 links to Rfam database...	0.93	0.87	1.00	13	1640	4	0	0	4	2
RFA_00427	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1471	2	0	0	2	1
RFA_00433	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	3	0	0	3	0
RFA_00434	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00436	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00440	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1470	3	0	0	3	0
RFA_00442	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	3	0	0	3	0
RFA_00444	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1525	2	0	0	2	0
RFA_00446	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1471	2	0	0	2	1
RFA_00449	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1471	2	0	0	2	1
RFA_00582	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	5980	21	0	0	21	0
RFA_00583	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4935	14	0	0	14	0
RFA_00584	Y_RNA links to Rfam database...	0.87	0.87	0.87	13	2911	14	0	2	12	2
RFA_00585	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4836	14	0	0	14	0
RFA_00586	Y_RNA links to Rfam database...	0.97	0.93	1.00	14	3902	16	0	0	16	1
RFA_00587	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4836	12	0	0	12	0
RFA_00588	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4545	16	0	0	16	0
RFA_00589	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4356	15	0	0	15	0
RFA_00594	Y_RNA links to Rfam database...	0.90	0.87	0.93	13	2761	10	0	1	9	2
RFA_00596	Y_RNA links to Rfam database...	0.00	0.00	0.00	0	5976	32	5	14	13	15
RFA_00597	Telomerase-vert links to Rfam database...	0.24	0.26	0.23	28	97782	111	22	71	18	81
RFA_00598	Telomerase-vert links to Rfam database...	0.62	0.58	0.66	59	84577	56	4	26	26	42
RFA_00599	Telomerase-vert links to Rfam database...	0.73	0.72	0.73	80	101366	58	10	19	29	31
RFA_00600	Telomerase-vert links to Rfam database...	0.62	0.70	0.55	70	120168	100	31	26	43	30
RFA_00601	Telomerase-vert links to Rfam database...	0.49	0.51	0.46	58	99110	84	27	40	17	56
RFA_00602	Telomerase-vert links to Rfam database...	0.66	0.68	0.65	79	101353	63	21	22	20	37
RFA_00603	Telomerase-cil links to Rfam database...	0.67	0.74	0.60	26	13487	22	4	13	5	9
RFA_00604	Telomerase-cil links to Rfam database...	0.71	0.74	0.68	26	13492	23	2	10	11	9
RFA_00605	Telomerase-cil links to Rfam database...	0.30	0.34	0.27	12	15180	46	3	30	13	23
RFA_00606	Telomerase-cil links to Rfam database...	0.60	0.62	0.59	24	21280	33	7	10	16	15
RFA_00607	Telomerase-cil links to Rfam database...	0.83	0.83	0.83	30	17730	17	4	2	11	6
RFA_00609	Telomerase-cil links to Rfam database...	0.53	0.59	0.47	22	17908	35	6	19	10	15
RFA_00610	Telomerase-cil links to Rfam database...	0.88	0.86	0.89	32	17169	12	0	4	8	5
RFA_00611	Telomerase-cil links to Rfam database...	0.80	0.80	0.80	28	13006	18	3	4	11	7
RFA_00613	Telomerase-cil links to Rfam database...	0.71	0.69	0.73	24	12847	17	4	5	8	11
RFA_00615	Telomerase-cil links to Rfam database...	0.62	0.69	0.56	24	13323	21	8	11	2	11
RFA_00620	Telomerase-cil links to Rfam database...	0.43	0.49	0.38	19	21895	44	8	23	13	20
RFA_00621	RNase_MRP links to Rfam database...	0.40	0.41	0.40	31	46282	64	1	46	17	45
RFA_00623	RNase_MRP links to Rfam database...	0.39	0.42	0.35	33	43863	73	4	56	13	45
RFA_00624	RNase_MRP links to Rfam database...	0.43	0.48	0.39	29	30060	53	9	37	7	32
RFA_00626	rne5 links to Rfam database...	0.86	0.80	0.91	70	56539	32	1	6	25	17
RFA_00627	rne5 links to Rfam database...	0.69	0.69	0.68	60	56865	47	6	22	19	27
RFA_00628	rne5 links to Rfam database...	0.90	0.88	0.93	76	57209	31	1	5	25	10
RFA_00630	rne5 links to Rfam database...	0.69	0.66	0.72	57	56874	41	4	18	19	30
RFA_00632	HDV_ribozyme links to Rfam database...	0.40	0.39	0.41	11	4068	16	0	16	0	17
RFA_00636	HDV_ribozyme links to Rfam database...	0.44	0.46	0.43	13	3975	17	0	17	0	15
RFA_00639	7SK links to Rfam database...	0.57	0.57	0.57	50	54528	49	8	29	12	37
RFA_00642	Vimentin3 links to Rfam database...	0.39	0.33	0.46	6	2913	7	2	5	0	12
RFA_00643	Vimentin3 links to Rfam database...	0.30	0.28	0.33	5	2196	11	2	8	1	13
RFA_00644	Vimentin3 links to Rfam database...	-0.01	0.00	0.00	0	2685	16	5	11	0	18
RFA_00645	Vimentin3 links to Rfam database...	-0.01	0.00	0.00	0	2404	11	2	9	0	18
RFA_00649	Vimentin3 links to Rfam database...	0.75	0.78	0.74	14	2126	8	1	4	3	4
RFA_00651	Vimentin3 links to Rfam database...	0.25	0.22	0.29	4	2066	12	0	10	2	14
RFA_00653	Vimentin3 links to Rfam database...	0.34	0.33	0.35	6	2128	11	2	9	0	12
RFA_00654	Vimentin3 links to Rfam database...	0.23	0.22	0.25	4	2399	12	2	10	0	14
RFA_00658	Hammerhead_1 links to Rfam database...	0.59	0.50	0.70	7	1118	5	0	3	2	7
RFA_00659	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	1122	8	0	6	2	14
RFA_00664	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	980	11	0	10	1	14
RFA_00667	Hammerhead_1 links to Rfam database...	0.30	0.29	0.33	4	978	8	1	7	0	10
RFA_00668	Hammerhead_1 links to Rfam database...	0.41	0.43	0.40	6	975	9	0	9	0	8
RFA_00672	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	895	9	0	8	1	13
RFA_00673	Hammerhead_1 links to Rfam database...	0.44	0.36	0.56	5	1119	5	0	4	1	9
RFA_00674	Hammerhead_1 links to Rfam database...	0.42	0.36	0.50	5	1118	5	0	5	0	9
RFA_00675	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	980	11	0	10	1	14
RFA_00677	Hammerhead_1 links to Rfam database...	0.46	0.43	0.50	6	978	7	0	6	1	8
RFA_00678	Hammerhead_1 links to Rfam database...	0.37	0.29	0.50	4	938	4	0	4	0	10
RFA_00680	Hammerhead_1 links to Rfam database...	0.74	0.71	0.77	10	1115	7	0	3	4	4
RFA_00684	Hammerhead_1 links to Rfam database...	0.66	0.64	0.69	9	977	6	0	4	2	5
RFA_00685	Hammerhead_1 links to Rfam database...	0.42	0.36	0.50	5	980	6	0	5	1	9
RFA_00695	Hammerhead_1 links to Rfam database...	0.64	0.64	0.64	9	7007	24	1	4	19	5
RFA_00703	Hammerhead_1 links to Rfam database...	0.64	0.64	0.64	9	4264	17	1	4	12	5
RFA_00704	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	988	3	0	2	1	14
RFA_00705	Hammerhead_1 links to Rfam database...	0.69	0.71	0.67	10	1020	5	0	5	0	4
RFA_00706	Hammerhead_1 links to Rfam database...	0.25	0.21	0.30	3	1025	7	0	7	0	11
RFA_00707	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	1027	8	0	8	0	14
RFA_00708	Hammerhead_1 links to Rfam database...	0.33	0.29	0.40	4	1025	6	0	6	0	10
RFA_00709	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	982	8	0	8	0	14
RFA_00710	Hammerhead_1 links to Rfam database...	0.07	0.07	0.10	1	980	9	0	9	0	13
RFA_00711	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	1023	12	0	12	0	14
RFA_00715	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	933	13	0	13	0	14
RFA_00716	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	936	10	0	10	0	14
RFA_00717	Hammerhead_1 links to Rfam database...	0.64	0.64	0.64	9	889	5	0	5	0	5
RFA_00730	s2m links to Rfam database...	0.69	0.67	0.73	8	892	4	1	2	1	4
RFA_00731	s2m links to Rfam database...	0.81	0.67	1.00	8	895	1	0	0	1	4
RFA_00733	s2m links to Rfam database...	0.81	0.67	1.00	8	895	1	0	0	1	4
RFA_00734	s2m links to Rfam database...	0.73	0.67	0.80	8	893	3	0	2	1	4
RFA_00736	s2m links to Rfam database...	0.81	0.67	1.00	8	895	1	0	0	1	4
RFA_00737	s2m links to Rfam database...	0.81	0.67	1.00	8	895	1	0	0	1	4
RFA_00745	s2m links to Rfam database...	0.81	0.67	1.00	8	938	1	0	0	1	4
RFA_00749	s2m links to Rfam database...	0.81	0.67	1.00	8	895	1	0	0	1	4
RFA_00758	s2m links to Rfam database...	0.76	0.58	1.00	7	896	0	0	0	0	5
RFA_00762	s2m links to Rfam database...	0.64	0.67	0.62	8	890	5	1	4	0	4
RFA_00763	s2m links to Rfam database...	0.81	0.67	1.00	8	895	1	0	0	1	4
RFA_00764	s2m links to Rfam database...	0.81	0.67	1.00	8	895	1	0	0	1	4
RFA_00765	s2m links to Rfam database...	0.81	0.67	1.00	8	895	1	0	0	1	4
RFA_00767	Corona_pk3 links to Rfam database...	0.63	0.56	0.71	10	1877	4	0	4	0	8
RFA_00768	Corona_pk3 links to Rfam database...	0.44	0.44	0.44	8	1873	11	1	9	1	10
RFA_00769	Corona_pk3 links to Rfam database...	0.54	0.56	0.53	10	1934	9	4	5	0	8
RFA_00770	Corona_pk3 links to Rfam database...	0.59	0.56	0.63	10	2000	9	0	6	3	8
RFA_00773	Corona_pk3 links to Rfam database...	0.55	0.56	0.56	10	1935	8	3	5	0	8
RFA_00779	Corona_pk3 links to Rfam database...	0.63	0.56	0.71	10	1939	4	3	1	0	8
RFA_00781	Gammaretro_CES links to Rfam database...	0.73	0.75	0.71	24	5016	11	2	8	1	8
RFA_00786	Gammaretro_CES links to Rfam database...	0.64	0.66	0.64	21	5017	12	2	10	0	11
RFA_00791	Gammaretro_CES links to Rfam database...	0.86	0.84	0.87	27	5120	6	2	2	2	5
RFA_00792	Gammaretro_CES links to Rfam database...	0.95	0.94	0.97	30	5019	3	0	1	2	2
RFA_00801	Gammaretro_CES links to Rfam database...	0.76	0.78	0.74	25	5016	11	2	7	2	7
RFA_00805	RNAIII links to Rfam database...	0.73	0.72	0.73	108	133239	49	5	34	10	42
RFA_00808	RydC links to Rfam database...	0.65	0.56	0.75	9	2004	3	0	3	0	7
RFA_00809	RydC links to Rfam database...	0.35	0.38	0.33	6	2127	12	1	11	0	10
RFA_00814	R2_retro_el links to Rfam database...	0.32	0.37	0.28	15	25146	45	8	31	6	26
RFA_00815	R2_retro_el links to Rfam database...	0.57	0.61	0.54	25	24485	35	5	16	14	16
RFA_00816	R2_retro_el links to Rfam database...	0.80	0.88	0.73	36	23171	20	9	4	7	5
RFA_00817	R2_retro_el links to Rfam database...	0.10	0.12	0.08	5	21883	57	18	39	0	36
RFA_00818	R2_retro_el links to Rfam database...	0.48	0.54	0.43	22	20250	38	13	16	9	19
RFA_00819	R2_retro_el links to Rfam database...	0.96	0.95	0.98	39	27926	34	0	1	33	2
RFA_00820	bicoid_3 links to Rfam database...	0.83	0.83	0.82	133	151363	45	7	22	16	27
RFA_00830	bicoid_3 links to Rfam database...	0.48	0.45	0.51	70	152491	110	5	62	43	84
SPR_00020	tRNA links to Rfam database...	0.76	0.80	0.73	16	2679	9	2	4	3	4
SPR_00023	tRNA links to Rfam database...	0.50	0.52	0.48	11	2827	12	3	9	0	10
SPR_00137	tRNA links to Rfam database...	0.77	0.86	0.69	18	2900	14	4	4	6	3
SPR_00273	tRNA links to Rfam database...	0.29	0.33	0.27	7	2824	20	2	17	1	14
SPR_00277	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	1	0	0	1	0
SPR_00394	tRNA links to Rfam database...	0.50	0.52	0.48	11	3632	17	6	6	5	10
SPR_00402	tRNA links to Rfam database...	0.76	0.76	0.76	16	2535	9	0	5	4	5
SPR_00721	tRNA links to Rfam database...	0.93	0.90	0.95	19	2906	5	0	1	4	2
SPR_00816	tRNA links to Rfam database...	0.32	0.35	0.29	7	3462	20	5	12	3	13
SPR_01157	tRNA links to Rfam database...	0.81	0.81	0.81	17	2754	6	0	4	2	4
SRP_00001	Bacteria_large_SRP links to Rfam database...	0.87	0.88	0.88	35	6746	6	1	4	1	5
SRP_00002	Metazoa_SRP links to Rfam database...	0.90	0.91	0.89	93	45045	15	4	8	3	9
SRP_00006	Metazoa_SRP links to Rfam database...	0.87	0.86	0.87	87	45653	16	1	12	3	14
SRP_00008	Bacteria_small_SRP links to Rfam database...	0.60	0.60	0.60	15	2901	11	0	10	1	10
SRP_00009	Plant_SRP links to Rfam database...	0.47	0.45	0.50	46	46573	46	6	40	0	56
SRP_00011	Plant_SRP links to Rfam database...	0.58	0.56	0.61	58	46265	39	2	35	2	46
SRP_00012	Plant_SRP links to Rfam database...	0.64	0.60	0.69	61	46271	29	1	27	1	40
SRP_00015	Plant_SRP links to Rfam database...	0.83	0.81	0.86	80	46267	23	0	13	10	19
SRP_00016	Archaea_SRP links to Rfam database...	0.79	0.78	0.80	85	47789	22	5	16	1	24
SRP_00018	Fungi_SRP links to Rfam database...	0.56	0.57	0.56	46	38421	46	7	29	10	35
SRP_00019	Fungi_SRP links to Rfam database...	0.90	0.89	0.91	81	35957	15	4	4	7	10
SRP_00020	Bacteria_small_SRP links to Rfam database...	0.86	0.88	0.85	29	5531	6	1	4	1	4
SRP_00024	Bacteria_large_SRP links to Rfam database...	0.38	0.39	0.37	34	37582	59	8	51	0	53
SRP_00026	Bacteria_large_SRP links to Rfam database...	0.68	0.69	0.66	61	36764	37	3	28	6	27
SRP_00027	Bacteria_large_SRP links to Rfam database...	0.77	0.76	0.78	66	37043	24	0	19	5	21
SRP_00030	Bacteria_large_SRP links to Rfam database...	0.80	0.82	0.79	72	36765	24	3	16	5	16
SRP_00031	Bacteria_large_SRP links to Rfam database...	0.72	0.73	0.71	65	36224	31	4	22	5	24
SRP_00037	Bacteria_large_SRP links to Rfam database...	0.44	0.45	0.44	39	36496	51	9	41	1	48
SRP_00038	Bacteria_small_SRP links to Rfam database...	0.19	0.18	0.21	6	5021	23	2	21	0	27
SRP_00040	Bacteria_small_SRP links to Rfam database...	0.70	0.74	0.66	23	5530	14	1	11	2	8
SRP_00042	Bacteria_small_SRP links to Rfam database...	0.45	0.48	0.43	12	3977	18	0	16	2	13
SRP_00043	Bacteria_small_SRP links to Rfam database...	0.44	0.48	0.41	14	5016	23	4	16	3	15
SRP_00044	Bacteria_small_SRP links to Rfam database...	0.89	0.88	0.90	28	6074	4	1	2	1	4
SRP_00046	Bacteria_small_SRP links to Rfam database...	0.97	0.97	0.97	31	4721	2	0	1	1	1
SRP_00050	Metazoa_SRP links to Rfam database...	0.95	0.93	0.98	92	44756	7	0	2	5	7
SRP_00051	Bacteria_small_SRP links to Rfam database...	0.30	0.30	0.31	9	5431	22	2	18	2	21
SRP_00053	Metazoa_SRP links to Rfam database...	0.89	0.87	0.91	82	45060	18	0	8	10	12
SRP_00054	Bacteria_small_SRP links to Rfam database...	0.22	0.22	0.23	7	5534	24	3	21	0	25
SRP_00056	Bacteria_small_SRP links to Rfam database...	0.81	0.81	0.81	30	6404	8	1	6	1	7
SRP_00057	Bacteria_small_SRP links to Rfam database...	0.73	0.74	0.72	26	6292	12	1	9	2	9
SRP_00058	Bacteria_small_SRP links to Rfam database...	0.90	0.91	0.89	31	5743	6	1	3	2	3
SRP_00060	Metazoa_SRP links to Rfam database...	0.88	0.86	0.91	86	44456	17	0	9	8	14
SRP_00061	Metazoa_SRP links to Rfam database...	0.92	0.92	0.93	92	44751	17	0	7	10	8
SRP_00066	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	45353	98	11	87	0	100
SRP_00067	Bacteria_small_SRP links to Rfam database...	0.68	0.66	0.71	25	5743	10	1	9	0	13
SRP_00069	Fungi_SRP links to Rfam database...	0.72	0.74	0.69	63	34362	31	4	24	3	22
SRP_00070	Fungi_SRP links to Rfam database...	0.28	0.32	0.24	39	126592	133	37	88	8	82
SRP_00072	Bacteria_small_SRP links to Rfam database...	0.30	0.31	0.30	9	6298	27	1	20	6	20
SRP_00073	Fungi_SRP links to Rfam database...	0.64	0.66	0.62	47	38984	42	8	21	13	24
SRP_00074	Bacteria_small_SRP links to Rfam database...	0.16	0.17	0.16	5	6523	31	4	23	4	24
SRP_00075	Bacteria_small_SRP links to Rfam database...	0.59	0.59	0.59	20	5531	16	1	13	2	14
SRP_00077	Bacteria_small_SRP links to Rfam database...	0.24	0.24	0.24	9	6632	29	4	25	0	28
SRP_00079	Plant_SRP links to Rfam database...	0.77	0.80	0.75	70	41812	33	5	18	10	18
SRP_00081	Bacteria_small_SRP links to Rfam database...	0.69	0.74	0.64	23	5529	13	1	12	0	8
SRP_00084	Bacteria_small_SRP links to Rfam database...	0.87	0.88	0.86	30	5425	5	1	4	0	4
SRP_00085	Plant_SRP links to Rfam database...	0.65	0.63	0.67	64	45355	38	7	25	6	37
SRP_00086	Metazoa_SRP links to Rfam database...	0.59	0.61	0.58	61	44147	46	4	41	1	39
SRP_00087	Fungi_SRP links to Rfam database...	0.07	0.09	0.06	5	37317	86	24	55	7	53
SRP_00088	Bacteria_large_SRP links to Rfam database...	0.67	0.71	0.64	63	34093	38	4	31	3	26
SRP_00089	Bacteria_large_SRP links to Rfam database...	0.74	0.76	0.73	68	35685	26	3	22	1	22
SRP_00090	Bacteria_large_SRP links to Rfam database...	0.30	0.30	0.30	27	35420	65	5	59	1	63
SRP_00091	Fungi_SRP links to Rfam database...	0.80	0.82	0.78	78	52875	33	4	18	11	17
SRP_00094	Bacteria_small_SRP links to Rfam database...	0.84	0.88	0.81	21	4069	7	1	4	2	3
SRP_00095	Bacteria_small_SRP links to Rfam database...	0.85	0.88	0.81	22	3978	7	1	4	2	3
SRP_00098	Bacteria_small_SRP links to Rfam database...	0.69	0.70	0.68	26	6403	14	1	11	2	11
SRP_00099	Plant_SRP links to Rfam database...	0.60	0.62	0.58	59	44749	44	6	36	2	36
SRP_00102	Metazoa_SRP links to Rfam database...	0.76	0.74	0.78	75	44455	25	1	20	4	26
SRP_00103	Metazoa_SRP links to Rfam database...	0.80	0.78	0.81	80	45352	23	2	17	4	22
SRP_00104	Fungi_SRP links to Rfam database...	0.40	0.43	0.36	30	34370	60	7	46	7	39
SRP_00105	Bacteria_small_SRP links to Rfam database...	0.29	0.29	0.29	10	5531	24	1	23	0	24
SRP_00106	Bacteria_large_SRP links to Rfam database...	0.67	0.76	0.59	19	5221	16	5	8	3	6
SRP_00107	Bacteria_small_SRP links to Rfam database...	0.13	0.16	0.12	3	3629	25	5	18	2	16
SRP_00117	Metazoa_SRP links to Rfam database...	0.74	0.73	0.75	74	45352	27	2	23	2	28
SRP_00121	Bacteria_small_SRP links to Rfam database...	0.77	0.72	0.82	18	4256	7	0	4	3	7
SRP_00123	Metazoa_SRP links to Rfam database...	0.87	0.88	0.86	80	36492	17	3	10	4	11
SRP_00124	Metazoa_SRP links to Rfam database...	0.65	0.64	0.68	54	37048	33	1	25	7	31
SRP_00127	Fungi_SRP links to Rfam database...	0.71	0.71	0.70	85	72269	43	7	29	7	34
SRP_00128	Bacteria_small_SRP links to Rfam database...	0.76	0.81	0.73	29	6746	13	1	10	2	7
SRP_00130	Archaea_SRP links to Rfam database...	0.50	0.51	0.49	49	49670	54	9	42	3	48
SRP_00132	Bacteria_small_SRP links to Rfam database...	0.69	0.72	0.66	21	4819	14	0	11	3	8
SRP_00134	Bacteria_large_SRP links to Rfam database...	0.55	0.55	0.55	16	5966	17	3	10	4	13
SRP_00136	Fungi_SRP links to Rfam database...	0.35	0.38	0.33	27	44171	61	13	42	6	44
SRP_00137	Bacteria_small_SRP links to Rfam database...	0.74	0.84	0.66	21	4154	11	4	7	0	4
SRP_00141	Bacteria_small_SRP links to Rfam database...	0.94	0.95	0.93	39	6286	4	1	2	1	2
SRP_00142	Archaea_SRP links to Rfam database...	0.33	0.32	0.34	30	45967	61	8	51	2	63
SRP_00143	Archaea_SRP links to Rfam database...	0.37	0.38	0.36	38	49664	70	7	61	2	63
SRP_00144	Archaea_SRP links to Rfam database...	0.38	0.39	0.38	37	46567	65	9	52	4	57
SRP_00145	Bacteria_small_SRP links to Rfam database...	0.96	0.98	0.95	39	6287	3	1	1	1	1
SRP_00146	Bacteria_small_SRP links to Rfam database...	0.93	0.94	0.92	34	5216	3	1	2	0	2
SRP_00148	Fungi_SRP links to Rfam database...	0.55	0.57	0.53	50	49992	56	3	41	12	37
SRP_00152	Plant_SRP links to Rfam database...	0.69	0.66	0.72	68	45658	33	1	26	6	35
SRP_00153	Plant_SRP links to Rfam database...	0.77	0.77	0.77	82	46864	27	6	19	2	25
SRP_00157	Fungi_SRP links to Rfam database...	0.38	0.42	0.34	30	44165	66	15	43	8	42
SRP_00158	Fungi_SRP links to Rfam database...	0.32	0.38	0.26	44	124083	130	48	76	6	71
SRP_00160	Fungi_SRP links to Rfam database...	0.44	0.44	0.44	57	86190	78	7	66	5	73
SRP_00161	Bacteria_small_SRP links to Rfam database...	0.36	0.41	0.33	9	2823	18	5	13	0	13
SRP_00162	Bacteria_small_SRP links to Rfam database...	0.87	0.87	0.87	20	2903	4	0	3	1	3
SRP_00163	Bacteria_small_SRP links to Rfam database...	0.39	0.42	0.37	11	3456	19	4	15	0	15
SRP_00164	Bacteria_small_SRP links to Rfam database...	0.93	0.94	0.92	33	6867	5	1	2	2	2
SRP_00170	Bacteria_small_SRP links to Rfam database...	0.55	0.56	0.54	14	4069	13	0	12	1	11
SRP_00171	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	45354	97	15	82	0	88
SRP_00173	Bacteria_large_SRP links to Rfam database...	0.79	0.81	0.78	73	38132	28	1	20	7	17
SRP_00174	Bacteria_large_SRP links to Rfam database...	0.79	0.81	0.76	70	38689	28	7	15	6	16
SRP_00175	Fungi_SRP links to Rfam database...	0.17	0.18	0.17	15	44462	76	13	61	2	69
SRP_00178	Plant_SRP links to Rfam database...	0.30	0.29	0.30	30	45653	72	4	66	2	72
SRP_00179	Plant_SRP links to Rfam database...	0.72	0.70	0.75	73	45959	28	6	18	4	32
SRP_00181	Plant_SRP links to Rfam database...	0.30	0.29	0.32	30	45961	67	2	63	2	72
SRP_00182	Plant_SRP links to Rfam database...	0.74	0.73	0.76	74	45958	27	3	21	3	27
SRP_00184	Plant_SRP links to Rfam database...	0.31	0.30	0.32	30	45961	68	5	60	3	70
SRP_00188	Plant_SRP links to Rfam database...	0.21	0.20	0.22	16	31051	58	3	55	0	63
SRP_00194	Bacteria_small_SRP links to Rfam database...	0.77	0.81	0.74	17	3217	11	0	6	5	4
SRP_00197	Archaea_SRP links to Rfam database...	0.22	0.21	0.24	21	49368	66	5	61	0	80
SRP_00198	Archaea_SRP links to Rfam database...	0.25	0.24	0.26	25	50945	71	5	65	1	78
SRP_00199	Archaea_SRP links to Rfam database...	0.63	0.63	0.63	66	50936	41	3	35	3	39
SRP_00200	Bacteria_small_SRP links to Rfam database...	0.80	0.78	0.82	28	6869	7	1	5	1	8
SRP_00201	Archaea_SRP links to Rfam database...	0.71	0.70	0.72	78	47786	33	3	28	2	33
SRP_00202	Archaea_SRP links to Rfam database...	0.88	0.87	0.89	102	54170	16	2	11	3	15
SRP_00203	Archaea_SRP links to Rfam database...	0.72	0.74	0.70	78	48717	41	2	31	8	27
SRP_00204	Archaea_SRP links to Rfam database...	0.67	0.67	0.67	68	49040	33	7	26	0	34
SRP_00206	Archaea_SRP links to Rfam database...	0.86	0.88	0.83	95	47781	21	5	14	2	13
SRP_00208	Archaea_SRP links to Rfam database...	0.65	0.64	0.65	65	46565	37	9	26	2	36
SRP_00209	Bacteria_small_SRP links to Rfam database...	0.63	0.59	0.67	16	4632	9	1	7	1	11
SRP_00213	Bacteria_small_SRP links to Rfam database...	0.65	0.64	0.67	16	4162	10	1	7	2	9
SRP_00215	Bacteria_small_SRP links to Rfam database...	0.82	0.80	0.83	20	3216	4	0	4	0	5
SRP_00216	Bacteria_small_SRP links to Rfam database...	0.95	0.96	0.93	26	3375	3	1	1	1	1
SRP_00217	Bacteria_small_SRP links to Rfam database...	0.94	0.96	0.92	23	3296	5	0	2	3	1
SRP_00219	Bacteria_small_SRP links to Rfam database...	0.89	0.87	0.91	20	3299	4	0	2	2	3
SRP_00222	Bacteria_small_SRP links to Rfam database...	0.94	0.96	0.92	24	3055	3	1	1	1	1
SRP_00227	Bacteria_small_SRP links to Rfam database...	0.88	0.87	0.90	27	5121	3	1	2	0	4
SRP_00228	Metazoa_SRP links to Rfam database...	0.96	0.95	0.97	90	45358	12	0	3	9	5
SRP_00229	Bacteria_small_SRP links to Rfam database...	0.32	0.33	0.31	9	5224	20	5	15	0	18
SRP_00230	Fungi_SRP links to Rfam database...	0.75	0.76	0.75	68	39530	31	2	21	8	22
SRP_00231	Bacteria_small_SRP links to Rfam database...	0.87	0.88	0.86	30	5425	6	1	4	1	4
SRP_00233	Bacteria_small_SRP links to Rfam database...	1.00	1.00	1.00	33	5118	0	0	0	0	0
SRP_00234	Bacteria_large_SRP links to Rfam database...	0.80	0.79	0.81	68	36231	24	1	15	8	18
SRP_00239	Plant_SRP links to Rfam database...	0.29	0.31	0.28	29	50300	75	16	58	1	64
SRP_00240	Plant_SRP links to Rfam database...	0.65	0.66	0.64	67	48101	45	2	35	8	35
SRP_00241	Plant_SRP links to Rfam database...	0.44	0.48	0.41	39	45960	60	17	40	3	43
SRP_00243	Bacteria_small_SRP links to Rfam database...	0.95	0.90	1.00	28	5123	0	0	0	0	3
SRP_00244	Bacteria_small_SRP links to Rfam database...	0.51	0.51	0.51	20	6864	19	3	16	0	19
SRP_00247	Metazoa_SRP links to Rfam database...	0.38	0.40	0.36	35	47182	65	11	50	4	52
SRP_00250	Bacteria_small_SRP links to Rfam database...	0.78	0.81	0.76	29	6748	12	1	8	3	7
SRP_00251	Bacteria_small_SRP links to Rfam database...	0.75	0.78	0.72	28	6982	14	1	10	3	8
SRP_00252	Metazoa_SRP links to Rfam database...	0.50	0.54	0.46	48	49037	59	12	44	3	41
SRP_00253	Metazoa_SRP links to Rfam database...	0.51	0.54	0.47	49	49351	61	9	46	6	41
SRP_00254	Fungi_SRP links to Rfam database...	0.48	0.54	0.43	33	32309	51	12	31	8	28
SRP_00255	Archaea_SRP links to Rfam database...	0.62	0.62	0.62	58	47492	41	3	33	5	36
SRP_00257	Metazoa_SRP links to Rfam database...	0.86	0.86	0.86	93	50932	18	5	10	3	15
SRP_00260	Metazoa_SRP links to Rfam database...	0.62	0.66	0.58	66	47782	50	7	40	3	34
SRP_00265	Fungi_SRP links to Rfam database...	0.58	0.62	0.55	45	41246	50	10	27	13	28
SRP_00266	Bacteria_small_SRP links to Rfam database...	0.72	0.72	0.72	21	4627	9	1	7	1	8
SRP_00267	Metazoa_SRP links to Rfam database...	0.83	0.81	0.85	78	44459	21	0	14	7	18
SRP_00268	Bacteria_small_SRP links to Rfam database...	0.56	0.59	0.53	16	4156	15	4	10	1	11
SRP_00269	Bacteria_small_SRP links to Rfam database...	0.59	0.61	0.59	20	5016	14	3	11	0	13
SRP_00270	Bacteria_small_SRP links to Rfam database...	0.44	0.45	0.44	14	4624	18	2	16	0	17
SRP_00271	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	3213	27	1	26	0	24
SRP_00273	Bacteria_small_SRP links to Rfam database...	0.89	0.90	0.88	36	6745	7	1	4	2	4
SRP_00274	Bacteria_small_SRP links to Rfam database...	0.93	0.95	0.92	36	6864	5	1	2	2	2
SRP_00276	Archaea_SRP links to Rfam database...	0.85	0.84	0.87	92	50615	17	5	9	3	18
SRP_00278	Archaea_SRP links to Rfam database...	0.67	0.67	0.67	70	45951	38	3	32	3	35
SRP_00282	Metazoa_SRP links to Rfam database...	0.30	0.38	0.24	24	43266	83	25	50	8	39
SRP_00285	Bacteria_small_SRP links to Rfam database...	0.98	0.97	1.00	29	3712	0	0	0	0	1
SRP_00286	Fungi_SRP links to Rfam database...	0.62	0.62	0.63	108	136854	73	3	61	9	66
SRP_00287	Fungi_SRP links to Rfam database...	0.59	0.60	0.59	97	141614	77	12	55	10	65
SRP_00290	Fungi_SRP links to Rfam database...	0.67	0.68	0.66	92	100436	63	3	45	15	43
SRP_00292	Fungi_SRP links to Rfam database...	0.55	0.52	0.58	90	137394	73	3	63	7	83
SRP_00294	Fungi_SRP links to Rfam database...	0.59	0.59	0.60	98	129122	70	7	59	4	69
SRP_00295	Bacteria_small_SRP links to Rfam database...	0.96	0.97	0.95	37	6864	5	1	1	3	1
SRP_00299	Metazoa_SRP links to Rfam database...	0.90	0.83	0.98	82	44169	9	0	2	7	17
SRP_00300	Metazoa_SRP links to Rfam database...	0.90	0.87	0.92	82	44164	16	0	7	9	12
SRP_00301	Fungi_SRP links to Rfam database...	0.85	0.84	0.87	72	32557	19	1	10	8	14
SRP_00302	Fungi_SRP links to Rfam database...	0.38	0.40	0.38	32	41531	62	10	43	9	49
SRP_00303	Bacteria_small_SRP links to Rfam database...	0.81	0.84	0.77	27	6635	10	1	7	2	5
SRP_00308	Bacteria_large_SRP links to Rfam database...	0.73	0.75	0.71	66	36222	30	4	23	3	22
SRP_00310	Bacteria_small_SRP links to Rfam database...	0.87	0.87	0.87	20	2903	5	0	3	2	3
SRP_00312	Bacteria_small_SRP links to Rfam database...	0.41	0.37	0.45	10	4164	12	1	11	0	17
SRP_00315	Bacteria_small_SRP links to Rfam database...	0.87	0.87	0.87	20	2903	3	0	3	0	3
SRP_00317	Metazoa_SRP links to Rfam database...	0.93	0.90	0.96	88	45058	14	0	4	10	10
SRP_00318	Bacteria_small_SRP links to Rfam database...	0.87	0.87	0.87	20	2980	4	0	3	1	3
SRP_00321	Archaea_SRP links to Rfam database...	0.58	0.58	0.58	63	47477	48	11	35	2	45
SRP_00322	Archaea_SRP links to Rfam database...	0.66	0.64	0.68	70	48413	34	2	31	1	39
SRP_00323	Archaea_SRP links to Rfam database...	0.82	0.80	0.83	86	47175	20	0	17	3	21
SRP_00324	Bacteria_small_SRP links to Rfam database...	0.57	0.62	0.53	18	5322	16	5	11	0	11
SRP_00325	Bacteria_small_SRP links to Rfam database...	1.00	1.00	1.00	33	4338	0	0	0	0	0
SRP_00326	Bacteria_small_SRP links to Rfam database...	0.56	0.55	0.59	17	5021	12	3	9	0	14
SRP_00328	Metazoa_SRP links to Rfam database...	0.62	0.65	0.59	55	39528	43	10	28	5	30
SRP_00329	Metazoa_SRP links to Rfam database...	0.57	0.58	0.56	49	39816	43	8	30	5	36
SRP_00330	Archaea_SRP links to Rfam database...	0.42	0.39	0.46	37	50006	44	3	40	1	58
SRP_00331	Metazoa_SRP links to Rfam database...	0.54	0.54	0.55	47	37589	42	7	32	3	40
SRP_00332	Archaea_SRP links to Rfam database...	0.69	0.70	0.69	74	50296	35	7	26	2	32
SRP_00333	Bacteria_small_SRP links to Rfam database...	0.89	0.85	0.94	29	5120	2	0	2	0	5
SRP_00335	Bacteria_large_SRP links to Rfam database...	0.32	0.44	0.23	17	35171	78	26	31	21	22
SRP_00337	Bacteria_large_SRP links to Rfam database...	0.75	0.76	0.75	69	35419	25	2	21	2	22
SRP_00338	Bacteria_small_SRP links to Rfam database...	0.97	0.97	0.97	35	5424	1	0	1	0	1
SRP_00339	Archaea_SRP links to Rfam database...	0.70	0.67	0.73	63	44465	27	4	19	4	31
SRP_00340	Metazoa_SRP links to Rfam database...	0.51	0.55	0.47	45	41232	53	10	41	2	37
SRP_00341	Bacteria_small_SRP links to Rfam database...	0.40	0.42	0.38	13	4719	21	3	18	0	18
SRP_00342	Bacteria_small_SRP links to Rfam database...	0.59	0.60	0.58	15	3979	16	1	10	5	10
SRP_00347	Metazoa_SRP links to Rfam database...	0.77	0.77	0.77	74	46569	29	5	17	7	22
SRP_00350	Bacteria_small_SRP links to Rfam database...	0.85	0.85	0.85	23	3889	5	1	3	1	4
SRP_00356	Bacteria_small_SRP links to Rfam database...	0.83	0.80	0.86	24	5022	4	0	4	0	6
SRP_00357	Bacteria_small_SRP links to Rfam database...	0.96	0.97	0.95	35	5319	4	1	1	2	1
SRP_00358	Bacteria_small_SRP links to Rfam database...	0.93	0.91	0.94	32	6294	4	1	1	2	3
SRP_00361	Plant_SRP links to Rfam database...	0.75	0.78	0.72	70	41808	37	5	22	10	20
SRP_00363	Bacteria_small_SRP links to Rfam database...	0.95	0.97	0.94	29	4722	5	0	2	3	1
SRP_00365	Bacteria_small_SRP links to Rfam database...	0.96	0.96	0.96	26	3376	1	0	1	0	1
SRP_00367	Bacteria_small_SRP links to Rfam database...	0.96	0.97	0.94	34	6750	3	1	1	1	1
SRP_00368	Metazoa_SRP links to Rfam database...	0.87	0.83	0.91	81	43867	15	0	8	7	17
SRP_00369	Bacteria_small_SRP links to Rfam database...	0.89	0.89	0.89	31	5743	5	1	3	1	4
SRP_00371	Fungi_SRP links to Rfam database...	0.78	0.80	0.75	66	36227	32	3	19	10	16
SRP_00382	Fungi_SRP links to Rfam database...	0.56	0.56	0.55	96	141605	88	8	69	11	74
SRP_00383	Bacteria_small_SRP links to Rfam database...	0.13	0.13	0.15	3	3220	17	4	13	0	21
TMR_00173	tmRNA links to Rfam database...	0.31	0.36	0.27	15	42139	69	15	26	28	27
TMR_00357	tmRNA links to Rfam database...	0.38	0.37	0.38	34	82939	75	16	39	20	58
TMR_00601	tmRNA links to Rfam database...	0.31	0.33	0.30	14	58949	90	13	20	57	28
TMR_00696	tmRNA links to Rfam database...	0.17	0.18	0.17	21	84953	116	18	86	12	93

^top

Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.

Table of contents:

Overview

Performance plots

Performance of CentroidAlifold(seed) - scored higher in this pairwise comparison

1. Total counts & total scores for CentroidAlifold(seed)

2. Individual counts for CentroidAlifold(seed) [ download as .csv ]

Performance of ProbKnot - scored lower in this pairwise comparison

1. Total counts & total scores for ProbKnot

2. Individual counts for ProbKnot [ download as .csv ]