CompaRNA - on-line benchmarks of RNA structure prediction methods

Laboratory of Structural Bioinformatics @ Adam Mickiewicz University in Poznan

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Overview

Metric	CentroidFold		RSpredict(20)
MCC	0.569	>	0.491
Average MCC ± 95% Confidence Intervals	0.662 ± 0.018	>	0.590 ± 0.024
Sensitivity	0.508	>	0.405
Positive Predictive Value	0.638	>	0.595
Total TP	35439	>	28233
Total TN	117659180	<	117667311
Total FP	23653	>	22098
Total FP CONTRA	2956	<	3030
Total FP INCONS	17155	>	16156
Total FP COMP	3542	>	2912
Total FN	34261	<	41467
P-value	3.56938820447e-08

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Performance plots

Comparison of performance of CentroidFold and RSpredict(20). Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data (individual counts for CentroidFold and RSpredict(20)).
Average Matthews Correlation Coefficients (MCC) with 95% confidence intervals (CIs) were plotted for different RNA families, for which at least 3 members were present in the benchmarking dataset. 'n' denotes the number of MCCs used to calculate the average and CI. See tables below for raw data (individual counts for CentroidFold and RSpredict(20)).
Comparison of average Matthews Correlation Coefficients (MCCs) for CentroidFold and RSpredict(20). The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data (individual counts for CentroidFold and RSpredict(20)).

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Performance of CentroidFold - scored higher in this pairwise comparison

1. Total counts & total scores for CentroidFold

Total Base Pair Counts
Total TP	35439
Total TN	117659180
Total FP	23653
Total FP CONTRA	2956
Total FP INCONS	17155
Total FP COMP	3542
Total FN	34261

Total Scores
MCC	0.569
Average MCC ± 95% Confidence Intervals	0.662 ± 0.018
Sensitivity	0.508
Positive Predictive Value	0.638
Nr of predictions	641

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2. Individual counts for CentroidFold [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00004	RNaseP_bact_a links to Rfam database...	0.68	0.63	0.73	61	47812	22	9	13	0	36
ASE_00005	RNaseP_bact_a links to Rfam database...	0.66	0.54	0.81	63	57892	15	0	15	0	54
ASE_00006	RNaseP_bact_a links to Rfam database...	0.52	0.48	0.56	45	47505	39	6	30	3	48
ASE_00007	RNaseP_bact_a links to Rfam database...	0.57	0.46	0.70	51	59612	25	0	22	3	59
ASE_00012	RNaseP_bact_a links to Rfam database...	0.54	0.44	0.68	54	73840	32	1	25	6	69
ASE_00018	RNaseP_bact_a links to Rfam database...	0.65	0.58	0.74	78	80495	29	0	28	1	56
ASE_00020	RNaseP_bact_a links to Rfam database...	0.68	0.60	0.78	75	73824	22	1	20	1	51
ASE_00021	RNaseP_bact_a links to Rfam database...	0.70	0.60	0.81	96	104077	29	2	21	6	64
ASE_00022	RNaseP_bact_b links to Rfam database...	0.32	0.27	0.38	34	82939	60	0	55	5	90
ASE_00028	RNaseP_bact_b links to Rfam database...	0.70	0.65	0.76	82	84558	34	4	22	8	44
ASE_00035	RNaseP_bact_a links to Rfam database...	0.40	0.32	0.50	38	70424	41	2	36	3	80
ASE_00037	RNaseP_bact_a links to Rfam database...	0.48	0.35	0.67	38	59283	19	0	19	0	72
ASE_00038	RNaseP_bact_a links to Rfam database...	0.55	0.47	0.65	47	53556	27	4	21	2	54
ASE_00040	RNaseP_bact_a links to Rfam database...	0.15	0.14	0.17	18	78895	94	5	85	4	115
ASE_00041	RNaseP_bact_a links to Rfam database...	0.67	0.53	0.86	57	57564	12	0	9	3	51
ASE_00042	RNaseP_bact_a links to Rfam database...	0.59	0.53	0.66	77	89983	43	1	39	3	68
ASE_00044	RNaseP_bact_a links to Rfam database...	0.69	0.67	0.72	70	54518	32	3	24	5	35
ASE_00045	RNaseP_bact_b links to Rfam database...	0.63	0.54	0.73	43	47219	24	5	11	8	37
ASE_00064	RNaseP_bact_a links to Rfam database...	0.66	0.57	0.77	51	45385	25	1	14	10	38
ASE_00068	RNaseP_bact_a links to Rfam database...	0.68	0.53	0.87	45	37623	7	0	7	0	40
ASE_00074	RNaseP_bact_a links to Rfam database...	0.51	0.49	0.54	58	67789	51	4	45	2	61
ASE_00075	RNaseP_bact_a links to Rfam database...	0.76	0.67	0.86	109	108684	24	2	16	6	53
ASE_00077	RNaseP_bact_a links to Rfam database...	0.48	0.34	0.69	29	45108	14	3	10	1	57
ASE_00078	RNaseP_bact_a links to Rfam database...	0.72	0.59	0.88	49	43015	11	0	7	4	34
ASE_00080	RNaseP_bact_a links to Rfam database...	0.61	0.50	0.74	61	71549	25	1	20	4	62
ASE_00081	RNaseP_bact_a links to Rfam database...	0.63	0.58	0.68	56	49688	27	5	21	1	41
ASE_00082	RNaseP_bact_a links to Rfam database...	0.79	0.69	0.91	80	70412	18	1	7	10	36
ASE_00083	RNaseP_bact_a links to Rfam database...	0.74	0.64	0.85	70	62399	17	0	12	5	40
ASE_00084	RNaseP_bact_a links to Rfam database...	0.76	0.66	0.88	65	53554	11	2	7	2	34
ASE_00087	RNaseP_bact_a links to Rfam database...	0.76	0.70	0.82	101	88287	23	2	20	1	43
ASE_00090	RNaseP_bact_a links to Rfam database...	0.62	0.59	0.64	60	55517	39	4	30	5	41
ASE_00092	RNaseP_bact_a links to Rfam database...	0.83	0.74	0.92	84	63455	10	1	6	3	29
ASE_00099	RNaseP_bact_a links to Rfam database...	0.51	0.47	0.55	56	64519	45	5	40	0	64
ASE_00104	RNaseP_bact_a links to Rfam database...	0.75	0.68	0.84	81	64164	17	2	14	1	38
ASE_00105	RNaseP_bact_a links to Rfam database...	0.56	0.48	0.65	53	64180	31	4	24	3	58
ASE_00107	RNaseP_bact_a links to Rfam database...	0.77	0.69	0.86	87	73052	15	1	13	1	40
ASE_00114	RNaseP_bact_b links to Rfam database...	0.54	0.43	0.67	33	45402	28	0	16	12	44
ASE_00115	RNaseP_bact_a links to Rfam database...	0.72	0.68	0.75	69	54523	31	4	19	8	32
ASE_00118	RNaseP_bact_a links to Rfam database...	0.66	0.59	0.75	60	60646	21	2	18	1	42
ASE_00119	RNaseP_bact_a links to Rfam database...	0.75	0.72	0.77	78	62734	26	2	21	3	30
ASE_00123	RNaseP_bact_a links to Rfam database...	0.58	0.52	0.65	44	38435	28	1	23	4	41
ASE_00125	RNaseP_bact_a links to Rfam database...	0.78	0.66	0.94	58	39278	7	1	3	3	30
ASE_00126	RNaseP_bact_a links to Rfam database...	0.61	0.56	0.66	46	40400	31	3	21	7	36
ASE_00128	RNaseP_bact_a links to Rfam database...	0.72	0.60	0.87	60	53232	12	1	8	3	40
ASE_00129	RNaseP_bact_a links to Rfam database...	0.72	0.64	0.82	71	62748	19	0	16	3	40
ASE_00131	RNaseP_bact_a links to Rfam database...	0.76	0.64	0.90	54	39280	12	1	5	6	31
ASE_00134	RNaseP_bact_a links to Rfam database...	0.46	0.38	0.56	36	50339	28	2	26	0	59
ASE_00135	RNaseP_bact_a links to Rfam database...	0.60	0.51	0.70	56	63110	31	1	23	7	53
ASE_00136	RNaseP_bact_a links to Rfam database...	0.61	0.53	0.70	49	48135	30	1	20	9	43
ASE_00137	RNaseP_bact_a links to Rfam database...	0.80	0.74	0.86	73	48431	13	3	9	1	25
ASE_00138	RNaseP_bact_a links to Rfam database...	0.62	0.49	0.77	40	40418	13	4	8	1	41
ASE_00140	RNaseP_bact_a links to Rfam database...	0.73	0.62	0.86	77	70786	14	3	10	1	48
ASE_00142	RNaseP_bact_a links to Rfam database...	0.62	0.57	0.68	70	67058	37	4	29	4	52
ASE_00146	RNaseP_bact_a links to Rfam database...	0.56	0.48	0.66	59	70786	32	6	25	1	65
ASE_00153	RNaseP_nuc links to Rfam database...	0.46	0.42	0.51	31	57569	56	5	25	26	42
ASE_00161	RNaseP_bact_b links to Rfam database...	0.46	0.44	0.49	38	53550	44	7	33	4	49
ASE_00163	RNaseP_bact_a links to Rfam database...	0.34	0.31	0.36	29	53221	60	4	47	9	64
ASE_00165	RNaseP_bact_a links to Rfam database...	0.78	0.69	0.88	70	52895	11	1	9	1	31
ASE_00170	RNaseP_bact_a links to Rfam database...	0.69	0.61	0.78	57	48755	16	3	13	0	36
ASE_00171	RNaseP_bact_a links to Rfam database...	0.74	0.68	0.80	64	48436	16	3	13	0	30
ASE_00172	RNaseP_bact_a links to Rfam database...	0.80	0.72	0.89	76	58911	10	2	7	1	30
ASE_00174	RNaseP_bact_a links to Rfam database...	0.62	0.55	0.71	60	60990	26	6	19	1	49
ASE_00175	RNaseP_bact_a links to Rfam database...	0.37	0.34	0.40	36	59942	55	1	52	2	71
ASE_00179	RNaseP_bact_a links to Rfam database...	0.68	0.60	0.78	50	44189	15	3	11	1	34
ASE_00180	RNaseP_bact_a links to Rfam database...	0.75	0.62	0.91	62	51292	11	0	6	5	38
ASE_00181	RNaseP_bact_a links to Rfam database...	0.50	0.46	0.55	49	57541	41	2	38	1	57
ASE_00182	RNaseP_bact_a links to Rfam database...	0.70	0.63	0.77	86	84144	25	1	24	0	50
ASE_00183	RNaseP_bact_a links to Rfam database...	0.72	0.68	0.77	77	61325	32	0	23	9	36
ASE_00184	RNaseP_bact_a links to Rfam database...	0.79	0.76	0.81	78	54519	20	3	15	2	24
ASE_00185	RNaseP_bact_a links to Rfam database...	0.72	0.64	0.82	82	73436	21	1	17	3	46
ASE_00186	RNaseP_bact_a links to Rfam database...	0.73	0.65	0.81	86	78897	28	2	18	8	46
ASE_00190	RNaseP_bact_b links to Rfam database...	0.69	0.52	0.92	47	45400	8	0	4	4	43
ASE_00197	RNaseP_bact_a links to Rfam database...	0.65	0.58	0.73	84	89138	37	2	29	6	61
ASE_00198	RNaseP_bact_a links to Rfam database...	0.70	0.63	0.77	64	52567	20	4	15	1	38
ASE_00203	RNaseP_bact_a links to Rfam database...	0.77	0.71	0.83	68	46583	18	4	10	4	28
ASE_00212	RNaseP_bact_a links to Rfam database...	0.71	0.63	0.79	93	93844	29	2	22	5	55
ASE_00214	RNaseP_bact_a links to Rfam database...	0.80	0.76	0.84	78	56187	20	3	12	5	25
ASE_00215	RNaseP_bact_a links to Rfam database...	0.56	0.49	0.63	49	48438	30	2	27	1	50
ASE_00216	RNaseP_bact_a links to Rfam database...	0.59	0.57	0.62	47	39264	29	7	22	0	35
ASE_00217	RNaseP_bact_a links to Rfam database...	0.45	0.38	0.55	34	40408	29	2	26	1	56
ASE_00221	RNaseP_bact_a links to Rfam database...	0.70	0.57	0.86	67	64542	14	0	11	3	50
ASE_00228	RNaseP_bact_a links to Rfam database...	0.72	0.65	0.80	56	46901	16	7	7	2	30
ASE_00229	RNaseP_bact_a links to Rfam database...	0.77	0.67	0.89	58	42421	7	1	6	0	29
ASE_00231	RNaseP_bact_a links to Rfam database...	0.80	0.72	0.90	69	47818	9	1	7	1	27
ASE_00232	RNaseP_bact_a links to Rfam database...	0.67	0.64	0.70	54	38426	23	10	13	0	30
ASE_00234	RNaseP_bact_a links to Rfam database...	0.57	0.47	0.69	61	75378	30	1	26	3	68
ASE_00238	RNaseP_bact_a links to Rfam database...	0.64	0.53	0.77	60	64183	19	0	18	1	54
ASE_00241	RNaseP_bact_a links to Rfam database...	0.76	0.63	0.92	55	43896	6	0	5	1	32
ASE_00242	RNaseP_bact_a links to Rfam database...	0.74	0.66	0.82	74	60985	19	4	12	3	38
ASE_00248	RNaseP_bact_a links to Rfam database...	0.67	0.56	0.80	64	62401	17	1	15	1	50
ASE_00254	RNaseP_bact_a links to Rfam database...	0.80	0.73	0.87	60	36787	15	4	5	6	22
ASE_00255	RNaseP_bact_a links to Rfam database...	0.66	0.59	0.73	77	74586	29	3	25	1	53
ASE_00257	RNaseP_bact_a links to Rfam database...	0.80	0.73	0.88	71	50959	12	0	10	2	26
ASE_00263	RNaseP_bact_a links to Rfam database...	0.56	0.54	0.59	65	70389	46	3	43	0	55
ASE_00267	RNaseP_bact_a links to Rfam database...	0.59	0.50	0.70	44	45087	23	1	18	4	44
ASE_00270	RNaseP_bact_a links to Rfam database...	0.72	0.67	0.77	86	72278	27	3	23	1	42
ASE_00274	RNaseP_bact_a links to Rfam database...	0.49	0.42	0.57	43	55535	33	3	30	0	60
ASE_00277	RNaseP_bact_a links to Rfam database...	0.60	0.56	0.65	51	48126	28	5	23	0	40
ASE_00279	RNaseP_bact_a links to Rfam database...	0.55	0.50	0.61	50	53219	32	3	29	0	51
ASE_00280	RNaseP_bact_a links to Rfam database...	0.65	0.55	0.77	54	51933	18	2	14	2	44
ASE_00281	RNaseP_bact_a links to Rfam database...	0.72	0.63	0.82	55	44484	18	1	11	6	33
ASE_00282	RNaseP_bact_a links to Rfam database...	0.50	0.46	0.55	58	77710	47	8	39	0	69
ASE_00283	RNaseP_bact_a links to Rfam database...	0.69	0.63	0.76	67	61688	22	4	17	1	40
ASE_00284	RNaseP_bact_a links to Rfam database...	0.65	0.59	0.72	64	58222	27	5	20	2	44
ASE_00285	RNaseP_bact_a links to Rfam database...	0.82	0.75	0.88	92	68902	17	3	9	5	30
ASE_00286	RNaseP_bact_a links to Rfam database...	0.73	0.64	0.83	59	46594	16	1	11	4	33
ASE_00287	RNaseP_bact_a links to Rfam database...	0.68	0.60	0.77	62	54865	20	1	18	1	41
ASE_00292	RNaseP_bact_a links to Rfam database...	0.60	0.52	0.69	72	81706	34	1	31	2	66
ASE_00294	RNaseP_bact_a links to Rfam database...	0.72	0.65	0.81	111	114344	28	1	25	2	60
ASE_00296	RNaseP_bact_a links to Rfam database...	0.58	0.52	0.63	76	91686	45	4	40	1	69
ASE_00297	RNaseP_bact_a links to Rfam database...	0.72	0.67	0.78	66	52890	20	3	16	1	32
ASE_00298	RNaseP_bact_a links to Rfam database...	0.30	0.27	0.33	31	67435	65	7	55	3	82
ASE_00305	RNaseP_bact_b links to Rfam database...	0.73	0.61	0.87	52	54555	13	0	8	5	33
ASE_00318	RNaseP_bact_b links to Rfam database...	0.58	0.51	0.67	60	80111	33	9	20	4	58
ASE_00321	RNaseP_bact_b links to Rfam database...	0.67	0.55	0.83	48	54557	12	0	10	2	40
ASE_00328	RNaseP_bact_b links to Rfam database...	0.74	0.61	0.89	68	72695	13	1	7	5	44
ASE_00332	RNaseP_bact_a links to Rfam database...	0.55	0.52	0.59	72	81687	53	2	49	2	66
ASE_00335	RNaseP_bact_b links to Rfam database...	0.63	0.54	0.72	63	75379	29	2	22	5	53
ASE_00340	RNaseP_bact_a links to Rfam database...	0.47	0.44	0.51	37	45984	39	4	31	4	48
ASE_00342	RNaseP_bact_a links to Rfam database...	0.72	0.64	0.80	74	62388	20	1	18	1	41
ASE_00353	RNaseP_bact_a links to Rfam database...	0.79	0.72	0.87	77	57881	14	1	11	2	30
ASE_00361	RNaseP_bact_a links to Rfam database...	0.56	0.50	0.63	63	75366	40	4	33	3	64
ASE_00362	RNaseP_bact_a links to Rfam database...	0.63	0.58	0.68	53	48127	27	1	24	2	38
ASE_00363	RNaseP_bact_a links to Rfam database...	0.75	0.63	0.89	59	51294	13	1	6	6	35
ASE_00364	RNaseP_bact_a links to Rfam database...	0.74	0.65	0.84	68	54204	17	0	13	4	37
ASE_00366	RNaseP_bact_a links to Rfam database...	0.45	0.40	0.51	39	58577	37	5	32	0	59
ASE_00367	RNaseP_bact_a links to Rfam database...	0.49	0.47	0.51	40	42993	43	6	32	5	46
ASE_00369	RNaseP_bact_a links to Rfam database...	0.72	0.63	0.84	67	55865	13	1	12	0	40
ASE_00370	RNaseP_bact_a links to Rfam database...	0.70	0.67	0.74	56	41829	22	2	18	2	28
ASE_00372	RNaseP_bact_a links to Rfam database...	0.69	0.64	0.74	64	51917	28	4	18	6	36
ASE_00374	RNaseP_bact_a links to Rfam database...	0.75	0.72	0.79	63	44770	17	2	15	0	25
ASE_00376	RNaseP_bact_a links to Rfam database...	0.67	0.61	0.74	64	56866	25	4	19	2	41
ASE_00377	RNaseP_bact_a links to Rfam database...	0.77	0.70	0.85	75	57542	19	3	10	6	32
ASE_00379	RNaseP_bact_a links to Rfam database...	0.62	0.56	0.68	50	45982	30	3	21	6	39
ASE_00382	RNaseP_bact_a links to Rfam database...	0.59	0.54	0.65	45	41836	27	5	19	3	39
ASE_00383	RNaseP_bact_a links to Rfam database...	0.76	0.70	0.84	73	54528	17	1	13	3	32
ASE_00384	RNaseP_bact_a links to Rfam database...	0.78	0.73	0.83	67	48435	18	1	13	4	25
ASE_00386	RNaseP_bact_a links to Rfam database...	0.69	0.66	0.73	63	50317	29	1	22	6	33
ASE_00387	RNaseP_bact_a links to Rfam database...	0.70	0.63	0.78	66	55860	20	1	18	1	38
ASE_00388	RNaseP_bact_a links to Rfam database...	0.70	0.61	0.82	54	45687	13	0	12	1	35
ASE_00390	RNaseP_bact_a links to Rfam database...	0.58	0.55	0.60	47	42117	32	7	24	1	38
ASE_00393	RNaseP_bact_a links to Rfam database...	0.73	0.66	0.82	61	47821	19	1	12	6	32
ASE_00394	RNaseP_bact_a links to Rfam database...	0.83	0.80	0.86	74	46885	14	3	9	2	19
ASE_00395	RNaseP_bact_a links to Rfam database...	0.72	0.67	0.78	56	41544	18	1	15	2	28
ASE_00396	RNaseP_bact_a links to Rfam database...	0.58	0.54	0.62	45	41543	29	2	26	1	38
ASE_00397	RNaseP_bact_a links to Rfam database...	0.75	0.70	0.80	73	54524	19	3	15	1	32
ASE_00398	RNaseP_bact_a links to Rfam database...	0.66	0.59	0.73	61	55862	25	1	21	3	43
ASE_00400	RNaseP_bact_a links to Rfam database...	0.68	0.58	0.78	62	57891	18	1	16	1	44
ASE_00401	RNaseP_bact_a links to Rfam database...	0.65	0.60	0.70	76	76920	33	4	28	1	50
ASE_00402	RNaseP_bact_a links to Rfam database...	0.72	0.62	0.84	53	42423	11	1	9	1	32
ASE_00403	RNaseP_bact_a links to Rfam database...	0.47	0.37	0.59	40	55877	31	0	28	3	67
ASE_00404	RNaseP_bact_a links to Rfam database...	0.62	0.52	0.75	44	43012	16	1	14	1	41
ASE_00406	RNaseP_bact_a links to Rfam database...	0.76	0.72	0.79	68	48742	21	5	13	3	26
ASE_00411	RNaseP_bact_a links to Rfam database...	0.55	0.46	0.65	41	49392	24	5	17	2	48
ASE_00412	RNaseP_bact_a links to Rfam database...	0.66	0.56	0.79	59	58236	19	1	15	3	46
ASE_00413	RNaseP_bact_a links to Rfam database...	0.56	0.48	0.66	39	44492	21	4	16	1	42
ASE_00415	RNaseP_bact_a links to Rfam database...	0.56	0.49	0.66	50	54870	31	2	24	5	53
ASE_00416	RNaseP_bact_a links to Rfam database...	0.62	0.56	0.68	71	77317	38	4	29	5	56
ASE_00419	RNaseP_bact_a links to Rfam database...	0.80	0.75	0.87	77	54857	13	8	4	1	26
ASE_00422	RNaseP_bact_a links to Rfam database...	0.69	0.66	0.73	62	46886	28	5	18	5	32
ASE_00423	RNaseP_bact_a links to Rfam database...	0.65	0.61	0.71	66	56860	29	5	22	2	43
ASE_00427	RNaseP_nuc links to Rfam database...	0.17	0.17	0.16	8	40705	50	11	31	8	38
ASE_00428	RNaseP_bact_a links to Rfam database...	0.70	0.62	0.79	77	76539	23	2	18	3	48
ASE_00430	RNaseP_bact_a links to Rfam database...	0.72	0.67	0.76	65	46886	27	4	16	7	32
ASE_00437	RNaseP_bact_a links to Rfam database...	0.50	0.40	0.64	54	79316	32	1	30	1	81
ASE_00441	RNaseP_bact_a links to Rfam database...	0.84	0.74	0.94	83	64173	9	0	5	4	29
ASE_00448	RNaseP_bact_a links to Rfam database...	0.46	0.37	0.57	41	64189	36	6	25	5	71
ASE_00451	RNaseP_bact_a links to Rfam database...	0.75	0.69	0.82	86	70771	20	1	18	1	39
CRW_00024	SSU_rRNA_archaea links to Rfam database...	0.79	0.76	0.83	347	1085183	108	8	63	37	111
CRW_00034	SSU_rRNA_bacteria links to Rfam database...	0.68	0.66	0.71	312	1141875	159	19	110	30	162
CRW_00048	SSU_rRNA_bacteria links to Rfam database...	0.60	0.49	0.75	230	1170907	91	8	70	13	240
CRW_00054	SSU_rRNA_bacteria links to Rfam database...	0.56	0.49	0.64	223	1107466	140	16	111	13	233
CRW_00059	SSU_rRNA_bacteria links to Rfam database...	0.60	0.51	0.71	241	1172408	111	9	88	14	232
CRW_00061	SSU_rRNA_bacteria links to Rfam database...	0.64	0.57	0.72	269	1181581	110	23	80	7	207
CRW_00068	SSU_rRNA_bacteria links to Rfam database...	0.55	0.49	0.63	225	1108945	147	19	116	12	232
CRW_00096	SSU_rRNA_bacteria links to Rfam database...	0.56	0.49	0.63	228	1178519	155	15	118	22	237
CRW_00140	SSU_rRNA_bacteria links to Rfam database...	0.59	0.49	0.70	226	1135957	106	11	84	11	237
CRW_00141	SSU_rRNA_bacteria links to Rfam database...	0.63	0.56	0.70	268	1201642	136	16	99	21	208
CRW_00150	SSU_rRNA_bacteria links to Rfam database...	0.55	0.47	0.66	217	1152591	126	17	96	13	249
CRW_00152	SSU_rRNA_bacteria links to Rfam database...	0.51	0.42	0.62	200	1180095	129	14	107	8	271
CRW_00166	SSU_rRNA_bacteria links to Rfam database...	0.61	0.53	0.70	247	1190845	120	6	98	16	221
CRW_00173	SSU_rRNA_bacteria links to Rfam database...	0.35	0.31	0.39	139	1082299	226	23	195	8	306
CRW_00177	SSU_rRNA_bacteria links to Rfam database...	0.52	0.45	0.59	213	1178522	162	17	128	17	260
CRW_00196	SSU_rRNA_bacteria links to Rfam database...	0.59	0.52	0.67	247	1207869	131	18	101	12	228
CRW_00230	SSU_rRNA_bacteria links to Rfam database...	0.59	0.52	0.67	250	1198552	140	19	105	16	228
CRW_00245	SSU_rRNA_bacteria links to Rfam database...	0.56	0.49	0.65	221	1105989	128	13	105	10	232
CRW_00248	SSU_rRNA_bacteria links to Rfam database...	0.66	0.61	0.71	296	1218724	154	20	101	33	188
CRW_00250	SSU_rRNA_bacteria links to Rfam database...	0.57	0.50	0.66	237	1198568	130	20	101	9	241
CRW_00256	SSU_rRNA_bacteria links to Rfam database...	0.45	0.35	0.57	165	1192449	145	20	106	19	303
CRW_00270	SSU_rRNA_bacteria links to Rfam database...	0.67	0.57	0.79	260	1111955	83	11	60	12	195
CRW_00271	SSU_rRNA_bacteria links to Rfam database...	0.48	0.41	0.55	190	1122405	171	26	130	15	272
CRW_00273	SSU_rRNA_bacteria links to Rfam database...	0.51	0.43	0.60	194	1085280	142	14	113	15	252
CRW_00275	SSU_rRNA_bacteria links to Rfam database...	0.62	0.54	0.70	249	1114913	130	13	96	21	208
CRW_00277	SSU_rRNA_bacteria links to Rfam database...	0.48	0.36	0.64	165	1110536	105	15	79	11	288
CRW_00278	SSU_rRNA_bacteria links to Rfam database...	0.49	0.41	0.57	186	1129931	157	13	126	18	264
CRW_00279	SSU_rRNA_bacteria links to Rfam database...	0.54	0.45	0.64	209	1180088	132	19	100	13	255
CRW_00280	SSU_rRNA_bacteria links to Rfam database...	0.53	0.42	0.67	192	1117973	105	9	86	10	261
CRW_00281	SSU_rRNA_bacteria links to Rfam database...	0.62	0.57	0.68	265	1144950	146	18	108	20	199
CRW_00284	SSU_rRNA_bacteria links to Rfam database...	0.48	0.36	0.65	162	1131511	101	11	76	14	294
CRW_00285	SSU_rRNA_bacteria links to Rfam database...	0.67	0.59	0.76	268	1117909	98	16	67	15	190
CRW_00289	SSU_rRNA_bacteria links to Rfam database...	0.61	0.55	0.68	260	1189270	143	18	105	20	216
CRW_00298	SSU_rRNA_eukarya links to Rfam database...	0.25	0.22	0.28	109	1620517	295	50	224	21	385
CRW_00301	SSU_rRNA_eukarya links to Rfam database...	0.48	0.39	0.58	203	1762152	211	28	120	63	316
CRW_00306	SSU_rRNA_eukarya links to Rfam database...	0.29	0.26	0.32	120	1445480	309	50	200	59	342
CRW_00310	SSU_rRNA_eukarya links to Rfam database...	0.38	0.34	0.42	178	1805524	303	44	204	55	343
CRW_00326	SSU_rRNA_eukarya links to Rfam database...	0.57	0.48	0.67	240	1627752	163	19	99	45	262
CRW_00330	SSU_rRNA_eukarya links to Rfam database...	0.30	0.25	0.36	131	1988654	302	33	197	72	386
CRW_00332	SSU_rRNA_eukarya links to Rfam database...	0.25	0.22	0.28	104	1769656	299	47	214	38	373
CRW_00333	SSU_rRNA_eukarya links to Rfam database...	0.30	0.24	0.36	125	1892139	288	29	192	67	389
CRW_00345	SSU_rRNA_eukarya links to Rfam database...	0.41	0.37	0.45	186	1586456	267	40	189	38	312
CRW_00346	SSU_rRNA_eukarya links to Rfam database...	0.40	0.38	0.42	189	1584645	289	48	208	33	312
CRW_00348	SSU_rRNA_eukarya links to Rfam database...	0.37	0.31	0.44	157	1615148	235	27	171	37	346
CRW_00358	SSU_rRNA_eukarya links to Rfam database...	0.42	0.39	0.45	200	1674917	285	39	209	37	307
CRW_00366	SSU_rRNA_eukarya links to Rfam database...	0.34	0.31	0.38	150	1579355	289	44	204	41	332
CRW_00370	SSU_rRNA_eukarya links to Rfam database...	0.38	0.33	0.43	167	1640375	256	43	181	32	339
CRW_00371	SSU_rRNA_eukarya links to Rfam database...	0.47	0.39	0.56	194	1611562	196	29	125	42	302
CRW_00372	SSU_rRNA_eukarya links to Rfam database...	0.48	0.41	0.58	202	1625955	204	26	123	55	296
CRW_00386	SSU_rRNA_eukarya links to Rfam database...	0.32	0.30	0.34	156	1750800	337	47	253	37	359
CRW_00403	SSU_rRNA_eukarya links to Rfam database...	0.31	0.29	0.34	135	1606132	324	52	209	63	329
CRW_00411	SSU_rRNA_eukarya links to Rfam database...	0.42	0.35	0.49	173	1615153	226	27	150	49	323
CRW_00414	SSU_rRNA_eukarya links to Rfam database...	0.42	0.36	0.48	180	1665851	239	34	160	45	315
CRW_00466	SSU_rRNA_bacteria links to Rfam database...	0.71	0.64	0.79	292	1116394	100	14	65	21	166
CRW_00548	5S_rRNA links to Rfam database...	0.86	0.82	0.91	31	7347	6	0	3	3	7
CRW_00552	5S_rRNA links to Rfam database...	0.92	0.87	0.97	34	7105	5	0	1	4	5
CRW_00555	5S_rRNA links to Rfam database...	0.91	0.85	0.97	34	7591	2	0	1	1	6
CRW_00567	5S_rRNA links to Rfam database...	0.76	0.75	0.77	30	7464	12	4	5	3	10
CRW_00570	5S_rRNA links to Rfam database...	0.88	0.89	0.87	33	6865	10	0	5	5	4
CRW_00573	5S_rRNA links to Rfam database...	0.29	0.25	0.34	10	7111	19	0	19	0	30
CRW_00589	SSU_rRNA_bacteria links to Rfam database...	0.34	0.28	0.42	125	1094162	188	16	157	15	320
CRW_00590	SSU_rRNA_bacteria links to Rfam database...	0.37	0.32	0.43	143	1119420	207	36	157	14	309
CRW_00591	SSU_rRNA_bacteria links to Rfam database...	0.65	0.59	0.72	261	1098541	124	19	82	23	185
CRW_00598	SSU_rRNA_eukarya links to Rfam database...	0.40	0.37	0.45	180	1665823	270	42	180	48	311
CRW_00758	SSU_rRNA_eukarya links to Rfam database...	0.37	0.34	0.40	164	1640353	298	41	208	49	319
CRW_00759	SSU_rRNA_eukarya links to Rfam database...	0.34	0.28	0.42	134	1636828	232	34	149	49	347
CRW_00760	SSU_rRNA_eukarya links to Rfam database...	0.38	0.34	0.42	167	1638559	278	50	179	49	319
CRW_00772	SSU_rRNA_bacteria links to Rfam database...	0.38	0.30	0.50	120	945758	137	16	106	15	284
CRW_00789	SSU_rRNA_bacteria links to Rfam database...	0.51	0.40	0.65	179	1137510	120	5	92	23	268
CRW_00795	SSU_rRNA_bacteria links to Rfam database...	0.35	0.28	0.44	110	1152672	173	15	124	34	284
CRW_00849	SSU_rRNA_bacteria links to Rfam database...	0.59	0.56	0.62	265	1117830	190	14	151	25	205
CRW_00997	SSU_rRNA_bacteria links to Rfam database...	0.63	0.55	0.72	256	1135921	119	15	86	18	208
CRW_01153	SSU_rRNA_eukarya links to Rfam database...	0.41	0.37	0.45	185	1606114	268	39	190	39	318
CRW_01171	SSU_rRNA_eukarya links to Rfam database...	0.46	0.41	0.52	206	1593608	228	40	151	37	300
CRW_01300	SSU_rRNA_eukarya links to Rfam database...	0.41	0.37	0.45	192	1693289	291	56	183	52	323
CRW_01484	5S_rRNA links to Rfam database...	0.21	0.18	0.26	7	7476	21	2	18	1	32
CRW_01485	5S_rRNA links to Rfam database...	0.52	0.49	0.56	19	7469	16	2	13	1	20
CRW_01487	5S_rRNA links to Rfam database...	0.13	0.12	0.14	5	7467	31	4	27	0	36
CRW_01489	5S_rRNA links to Rfam database...	0.18	0.18	0.18	7	7465	31	2	29	0	32
CRW_01491	5S_rRNA links to Rfam database...	0.77	0.65	0.90	28	8354	4	0	3	1	15
CRW_01492	5S_rRNA links to Rfam database...	0.80	0.79	0.83	33	7586	11	0	7	4	9
CRW_01494	5S_rRNA links to Rfam database...	0.70	0.68	0.73	27	7103	11	0	10	1	13
CRW_01497	5S_rRNA links to Rfam database...	0.60	0.50	0.71	20	7112	13	0	8	5	20
CRW_01498	5S_rRNA links to Rfam database...	0.91	0.84	1.00	36	8092	2	0	0	2	7
CRW_01499	5S_rRNA links to Rfam database...	0.70	0.61	0.81	25	7970	7	0	6	1	16
CRW_01500	5S_rRNA links to Rfam database...	0.17	0.16	0.19	6	7718	26	4	22	0	32
CRW_01501	5S_rRNA links to Rfam database...	0.82	0.80	0.84	36	8472	10	0	7	3	9
CRW_01508	5S_rRNA links to Rfam database...	0.85	0.81	0.89	34	7963	10	0	4	6	8
CRW_01532	5S_rRNA links to Rfam database...	0.78	0.76	0.80	28	7105	13	0	7	6	9
CRW_01533	5S_rRNA links to Rfam database...	0.79	0.78	0.81	29	7104	13	0	7	6	8
CRW_01534	5S_rRNA links to Rfam database...	0.79	0.78	0.81	29	7104	11	0	7	4	8
CRW_01535	5S_rRNA links to Rfam database...	0.82	0.78	0.85	29	7106	7	0	5	2	8
CRW_01536	5S_rRNA links to Rfam database...	0.73	0.65	0.83	24	6992	6	0	5	1	13
CRW_01537	5S_rRNA links to Rfam database...	0.58	0.49	0.69	18	7114	14	0	8	6	19
CRW_01539	5S_rRNA links to Rfam database...	0.80	0.78	0.83	29	7105	12	0	6	6	8
CRW_01540	5S_rRNA links to Rfam database...	0.76	0.76	0.76	28	7103	13	0	9	4	9
CRW_01541	5S_rRNA links to Rfam database...	0.89	0.86	0.91	32	7105	6	0	3	3	5
CRW_01542	5S_rRNA links to Rfam database...	0.66	0.57	0.78	21	7113	6	0	6	0	16
CRW_01544	5S_rRNA links to Rfam database...	0.78	0.76	0.80	28	7105	8	0	7	1	9
CRW_01548	5S_rRNA links to Rfam database...	0.78	0.73	0.84	27	6989	6	0	5	1	10
CRW_01555	5S_rRNA links to Rfam database...	0.78	0.70	0.87	26	9015	10	0	4	6	11
CRW_01556	5S_rRNA links to Rfam database...	0.84	0.78	0.91	29	7108	7	0	3	4	8
CRW_01557	5S_rRNA links to Rfam database...	0.82	0.81	0.83	30	7104	11	0	6	5	7
CRW_01559	5S_rRNA links to Rfam database...	0.79	0.78	0.81	29	7224	13	0	7	6	8
CRW_01562	5S_rRNA links to Rfam database...	0.89	0.84	0.94	31	7107	6	0	2	4	6
CRW_01563	5S_rRNA links to Rfam database...	0.84	0.70	1.00	26	6877	1	0	0	1	11
CRW_01566	5S_rRNA links to Rfam database...	0.32	0.30	0.35	11	7109	20	4	16	0	26
CRW_01568	5S_rRNA links to Rfam database...	0.78	0.78	0.78	29	7103	13	0	8	5	8
CRW_01569	5S_rRNA links to Rfam database...	0.80	0.78	0.83	29	7105	7	0	6	1	8
CRW_01570	5S_rRNA links to Rfam database...	0.83	0.81	0.86	30	7105	12	0	5	7	7
CRW_01572	5S_rRNA links to Rfam database...	0.37	0.27	0.53	10	7002	9	2	7	0	27
CRW_01573	5S_rRNA links to Rfam database...	0.79	0.78	0.81	29	7224	11	0	7	4	8
CRW_01578	5S_rRNA links to Rfam database...	0.82	0.78	0.85	29	7106	10	0	5	5	8
CRW_01580	5S_rRNA links to Rfam database...	0.68	0.57	0.81	21	7114	7	0	5	2	16
CRW_01581	5S_rRNA links to Rfam database...	0.31	0.27	0.37	10	7113	18	0	17	1	27
CRW_01583	5S_rRNA links to Rfam database...	0.84	0.76	0.93	28	7110	3	0	2	1	9
CRW_01584	5S_rRNA links to Rfam database...	0.90	0.89	0.92	33	7104	7	0	3	4	4
CRW_01590	5S_rRNA links to Rfam database...	0.24	0.24	0.25	9	7104	27	3	24	0	28
CRW_01593	5S_rRNA links to Rfam database...	0.79	0.78	0.81	29	7104	12	0	7	5	8
CRW_01595	5S_rRNA links to Rfam database...	0.41	0.32	0.52	12	8492	12	0	11	1	25
CRW_01599	5S_rRNA links to Rfam database...	0.74	0.73	0.75	27	7104	13	0	9	4	10
CRW_01603	5S_rRNA links to Rfam database...	0.84	0.76	0.93	28	7110	3	0	2	1	9
CRW_01605	5S_rRNA links to Rfam database...	0.73	0.70	0.76	26	7106	12	0	8	4	11
CRW_01606	5S_rRNA links to Rfam database...	0.62	0.51	0.76	19	7115	7	0	6	1	18
CRW_01608	5S_rRNA links to Rfam database...	0.85	0.81	0.88	30	8351	6	0	4	2	7
CRW_01616	5S_rRNA links to Rfam database...	0.79	0.78	0.81	29	7104	13	0	7	6	8
CRW_01617	5S_rRNA links to Rfam database...	0.93	0.89	0.97	33	7106	5	0	1	4	4
CRW_01620	5S_rRNA links to Rfam database...	0.89	0.89	0.89	33	6984	5	0	4	1	4
CRW_01621	5S_rRNA links to Rfam database...	0.72	0.70	0.74	26	7105	11	0	9	2	11
CRW_01623	5S_rRNA links to Rfam database...	0.87	0.81	0.94	30	7108	5	0	2	3	7
CRW_01625	5S_rRNA links to Rfam database...	0.79	0.78	0.81	29	7104	8	0	7	1	8
PDB_00012	mir-TAR links to Rfam database...	1.00	1.00	1.00	7	399	3	0	0	3	0
PDB_00070	tRNA links to Rfam database...	0.69	0.67	0.73	16	2828	6	1	5	0	8
PDB_00213	Gammaretro_CES links to Rfam database...	0.94	0.88	1.00	36	5014	0	0	0	0	5
PDB_00229	tRNA links to Rfam database...	0.96	0.91	1.00	21	2754	0	0	0	0	2
PDB_00327	tRNA links to Rfam database...	0.86	0.74	1.00	17	3064	0	0	0	0	6
PDB_00362	tRNA links to Rfam database...	0.91	0.91	0.91	20	2828	2	0	2	0	2
PDB_00402	tRNA links to Rfam database...	0.93	0.91	0.95	21	2753	1	0	1	0	2
PDB_00431	tRNA links to Rfam database...	0.77	0.75	0.79	15	2192	7	0	4	3	5
PDB_00474	tRNA links to Rfam database...	0.29	0.30	0.28	7	2676	18	2	16	0	16
PDB_00553	mir-TAR links to Rfam database...	1.00	1.00	1.00	11	454	0	0	0	0	0
PDB_00571	tRNA links to Rfam database...	0.77	0.64	0.94	16	3304	1	1	0	0	9
PDB_00667	tRNA links to Rfam database...	0.68	0.68	0.68	15	2828	8	4	3	1	7
PDB_00703	SSU_rRNA_bacteria links to Rfam database...	0.55	0.49	0.61	244	1073448	180	13	140	27	251
PDB_00741	Entero_5_CRE links to Rfam database...	0.87	0.76	1.00	13	690	0	0	0	0	4
PDB_00810	s2m links to Rfam database...	0.70	0.59	0.83	10	1069	3	0	2	1	7
PDB_00828	Purine links to Rfam database...	0.88	0.78	1.00	21	2464	0	0	0	0	6
PDB_00829	Purine links to Rfam database...	0.86	0.75	1.00	18	2260	0	0	0	0	6
PDB_00854	SSU_rRNA_bacteria links to Rfam database...	0.53	0.49	0.57	264	1500316	234	15	183	36	271
PDB_00876	HIV_FE links to Rfam database...	0.92	0.90	0.95	18	971	1	0	1	0	2
PDB_01002	tRNA links to Rfam database...	0.95	0.90	1.00	19	2756	2	0	0	2	2
PDB_01020	Purine links to Rfam database...	0.86	0.74	1.00	17	2261	1	0	0	1	6
PDB_01050	UnaL2 links to Rfam database...	0.96	0.92	1.00	12	618	2	0	0	2	1
PDB_01053	tRNA links to Rfam database...	1.00	1.00	1.00	16	1362	0	0	0	0	0
PDB_01073	SAM links to Rfam database...	0.86	0.74	1.00	25	4346	1	0	0	1	9
PDB_01088	SSU_rRNA_bacteria links to Rfam database...	0.46	0.39	0.55	215	1471076	203	25	154	24	332
PDB_01103	SSU_rRNA_bacteria links to Rfam database...	0.57	0.53	0.61	297	1606045	214	20	166	28	265
PDB_01105	SSU_rRNA_bacteria links to Rfam database...	0.62	0.57	0.68	307	1433517	177	8	139	30	233
PDB_01114	TPP links to Rfam database...	0.71	0.63	0.81	17	2829	4	0	4	0	10
PDB_01120	SSU_rRNA_bacteria links to Rfam database...	0.49	0.42	0.59	220	1204752	177	19	137	21	307
PDB_01152	HIV_FS2 links to Rfam database...	0.96	0.93	1.00	13	548	0	0	0	0	1
PDB_01236	ykoK links to Rfam database...	0.69	0.65	0.74	35	11581	15	0	12	3	19
PDB_01273	SSU_rRNA_bacteria links to Rfam database...	0.51	0.47	0.56	229	1117849	211	14	168	29	262
RFA_00389	Hammerhead_3 links to Rfam database...	0.93	0.93	0.93	14	1416	4	0	1	3	1
RFA_00390	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00391	Hammerhead_3 links to Rfam database...	0.73	0.60	0.90	9	1421	3	0	1	2	6
RFA_00396	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	2	0	0	2	1
RFA_00402	Hammerhead_3 links to Rfam database...	0.70	0.60	0.82	9	1420	3	0	2	1	6
RFA_00409	Hammerhead_3 links to Rfam database...	0.73	0.60	0.90	9	1421	2	0	1	1	6
RFA_00416	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1470	3	0	0	3	0
RFA_00433	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00434	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00436	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00440	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1470	3	0	0	3	0
RFA_00442	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00444	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1525	1	0	0	1	0
RFA_00583	Y_RNA links to Rfam database...	0.93	0.93	0.93	14	4935	5	0	1	4	1
RFA_00584	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	2911	12	0	0	12	0
RFA_00585	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4836	2	0	0	2	0
RFA_00586	Y_RNA links to Rfam database...	0.97	0.93	1.00	14	3902	8	0	0	8	1
RFA_00587	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4836	8	0	0	8	0
RFA_00588	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4545	15	0	0	15	0
RFA_00589	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4356	17	0	0	17	0
RFA_00594	Y_RNA links to Rfam database...	0.97	0.93	1.00	14	2761	7	0	0	7	1
RFA_00596	Y_RNA links to Rfam database...	0.00	0.00	0.00	0	5991	13	0	4	9	15
RFA_00599	Telomerase-vert links to Rfam database...	0.73	0.70	0.76	78	101372	49	7	18	24	33
RFA_00601	Telomerase-vert links to Rfam database...	0.34	0.36	0.32	41	99105	97	33	56	8	73
RFA_00602	Telomerase-vert links to Rfam database...	0.67	0.71	0.64	82	101347	54	22	24	8	34
RFA_00658	Hammerhead_1 links to Rfam database...	0.59	0.50	0.70	7	1118	5	0	3	2	7
RFA_00664	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	981	10	0	9	1	14
RFA_00667	Hammerhead_1 links to Rfam database...	0.29	0.29	0.31	4	977	10	1	8	1	10
RFA_00668	Hammerhead_1 links to Rfam database...	0.65	0.43	1.00	6	984	0	0	0	0	8
RFA_00672	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	897	6	0	6	0	13
RFA_00673	Hammerhead_1 links to Rfam database...	0.42	0.36	0.50	5	1118	6	0	5	1	9
RFA_00674	Hammerhead_1 links to Rfam database...	0.09	0.07	0.14	1	1121	6	0	6	0	13
RFA_00675	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	980	11	0	10	1	14
RFA_00677	Hammerhead_1 links to Rfam database...	0.59	0.57	0.62	8	977	7	0	5	2	6
RFA_00678	Hammerhead_1 links to Rfam database...	0.53	0.29	1.00	4	942	0	0	0	0	10
RFA_00680	Hammerhead_1 links to Rfam database...	0.74	0.71	0.77	10	1115	6	0	3	3	4
RFA_00704	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	990	0	0	0	0	14
RFA_00707	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	1030	5	0	5	0	14
RFA_00715	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	937	9	0	9	0	14
RFA_00717	Hammerhead_1 links to Rfam database...	0.80	0.64	1.00	9	894	0	0	0	0	5
RFA_00730	s2m links to Rfam database...	0.63	0.58	0.70	7	893	5	0	3	2	5
RFA_00731	s2m links to Rfam database...	0.83	0.83	0.83	10	891	4	0	2	2	2
RFA_00733	s2m links to Rfam database...	0.83	0.83	0.83	10	891	4	0	2	2	2
RFA_00734	s2m links to Rfam database...	0.83	0.83	0.83	10	891	4	0	2	2	2
RFA_00736	s2m links to Rfam database...	0.83	0.83	0.83	10	891	4	0	2	2	2
RFA_00737	s2m links to Rfam database...	0.78	0.75	0.82	9	892	4	0	2	2	3
RFA_00745	s2m links to Rfam database...	0.60	0.58	0.64	7	935	6	1	3	2	5
RFA_00749	s2m links to Rfam database...	0.83	0.83	0.83	10	891	4	0	2	2	2
RFA_00758	s2m links to Rfam database...	0.86	0.75	1.00	9	894	1	0	0	1	3
RFA_00762	s2m links to Rfam database...	0.64	0.67	0.62	8	890	6	1	4	1	4
RFA_00763	s2m links to Rfam database...	0.78	0.75	0.82	9	892	4	0	2	2	3
RFA_00764	s2m links to Rfam database...	0.83	0.83	0.83	10	891	4	0	2	2	2
RFA_00765	s2m links to Rfam database...	0.78	0.75	0.82	9	892	4	0	2	2	3
RFA_00786	Gammaretro_CES links to Rfam database...	0.47	0.41	0.54	13	5026	11	1	10	0	19
RFA_00791	Gammaretro_CES links to Rfam database...	0.90	0.88	0.93	28	5121	3	1	1	1	4
RFA_00792	Gammaretro_CES links to Rfam database...	0.97	0.94	1.00	30	5020	0	0	0	0	2
RFA_00801	Gammaretro_CES links to Rfam database...	0.81	0.78	0.83	25	5020	6	0	5	1	7
SPR_00007	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00009	tRNA links to Rfam database...	0.05	0.05	0.06	1	2834	15	1	14	0	19
SPR_00010	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00012	tRNA links to Rfam database...	0.23	0.25	0.22	5	2827	18	2	16	0	15
SPR_00013	tRNA links to Rfam database...	0.58	0.45	0.75	9	2838	3	0	3	0	11
SPR_00016	tRNA links to Rfam database...	0.80	0.76	0.84	16	2831	3	0	3	0	5
SPR_00017	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00025	tRNA links to Rfam database...	0.58	0.55	0.61	11	2908	7	1	6	0	9
SPR_00026	tRNA links to Rfam database...	0.90	0.81	1.00	17	2909	0	0	0	0	4
SPR_00027	tRNA links to Rfam database...	0.24	0.19	0.31	4	2913	9	0	9	0	17
SPR_00036	tRNA links to Rfam database...	0.89	0.80	1.00	16	2759	1	0	0	1	4
SPR_00045	tRNA links to Rfam database...	0.95	0.95	0.95	21	2828	2	0	1	1	1
SPR_00064	tRNA links to Rfam database...	0.54	0.57	0.52	12	2827	11	2	9	0	9
SPR_00065	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00066	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00068	tRNA links to Rfam database...	0.74	0.76	0.73	16	2828	7	3	3	1	5
SPR_00070	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00074	tRNA links to Rfam database...	0.87	0.80	0.94	16	2833	2	1	0	1	4
SPR_00079	tRNA links to Rfam database...	0.83	0.68	1.00	13	2472	1	0	0	1	6
SPR_00086	tRNA links to Rfam database...	0.34	0.33	0.35	7	2830	13	4	9	0	14
SPR_00087	tRNA links to Rfam database...	0.73	0.65	0.81	13	2834	3	0	3	0	7
SPR_00088	tRNA links to Rfam database...	0.73	0.65	0.81	13	2834	3	0	3	0	7
SPR_00089	tRNA links to Rfam database...	0.73	0.65	0.81	13	2834	3	0	3	0	7
SPR_00090	tRNA links to Rfam database...	0.95	0.90	1.00	18	2832	0	0	0	0	2
SPR_00091	tRNA links to Rfam database...	0.73	0.65	0.81	13	2834	3	0	3	0	7
SPR_00095	tRNA links to Rfam database...	0.78	0.76	0.80	16	2830	4	2	2	0	5
SPR_00111	tRNA links to Rfam database...	0.98	0.95	1.00	20	2681	0	0	0	0	1
SPR_00112	tRNA links to Rfam database...	1.00	1.00	1.00	21	2680	1	0	0	1	0
SPR_00115	tRNA links to Rfam database...	0.85	0.81	0.89	17	2682	2	0	2	0	4
SPR_00117	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	1	0	0	1	0
SPR_00139	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	1	0	0	1	0
SPR_00153	tRNA links to Rfam database...	0.40	0.38	0.42	8	2907	11	3	8	0	13
SPR_00155	tRNA links to Rfam database...	0.53	0.57	0.50	12	2902	12	3	9	0	9
SPR_00156	tRNA links to Rfam database...	0.51	0.57	0.46	12	2900	14	5	9	0	9
SPR_00176	tRNA links to Rfam database...	0.52	0.55	0.50	11	2828	11	2	9	0	9
SPR_00177	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	2	0	0	2	0
SPR_00178	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00191	tRNA links to Rfam database...	0.18	0.19	0.19	4	2829	17	4	13	0	17
SPR_00200	tRNA links to Rfam database...	0.74	0.76	0.73	16	2828	6	3	3	0	5
SPR_00224	tRNA links to Rfam database...	0.33	0.35	0.32	7	3719	20	5	10	5	13
SPR_00271	tRNA links to Rfam database...	0.71	0.71	0.71	15	2829	6	1	5	0	6
SPR_00273	tRNA links to Rfam database...	0.63	0.57	0.71	12	2833	5	0	5	0	9
SPR_00276	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00277	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	1	0	0	1	0
SPR_00294	tRNA links to Rfam database...	0.80	0.76	0.84	16	2831	3	1	2	0	5
SPR_00295	tRNA links to Rfam database...	0.95	0.95	0.95	20	2754	2	0	1	1	1
SPR_00314	tRNA links to Rfam database...	0.74	0.81	0.68	17	2901	11	0	8	3	4
SPR_00315	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	2	0	0	2	0
SPR_00317	tRNA links to Rfam database...	0.56	0.60	0.52	12	2903	11	7	4	0	8
SPR_00318	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	3	0	0	3	0
SPR_00321	tRNA links to Rfam database...	1.00	1.00	1.00	21	2982	1	0	0	1	0
SPR_00333	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	0	0	0	0	0
SPR_00352	tRNA links to Rfam database...	0.65	0.57	0.75	12	2910	4	0	4	0	9
SPR_00353	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00357	tRNA links to Rfam database...	0.77	0.81	0.74	17	2903	6	1	5	0	4
SPR_00358	tRNA links to Rfam database...	0.95	0.95	0.95	19	2906	2	0	1	1	1
SPR_00370	tRNA links to Rfam database...	0.49	0.52	0.46	11	2751	13	3	10	0	10
SPR_00386	tRNA links to Rfam database...	0.67	0.60	0.75	12	4170	9	0	4	5	8
SPR_00414	tRNA links to Rfam database...	0.82	0.86	0.78	18	3547	5	4	1	0	3
SPR_00415	tRNA links to Rfam database...	0.77	0.86	0.69	18	3544	8	7	1	0	3
SPR_00417	tRNA links to Rfam database...	0.85	0.77	0.94	17	3552	5	0	1	4	5
SPR_00418	tRNA links to Rfam database...	0.88	0.82	0.95	18	3551	4	0	1	3	4
SPR_00434	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	1	0	0	1	0
SPR_00435	tRNA links to Rfam database...	0.71	0.71	0.71	15	2829	7	0	6	1	6
SPR_00436	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	1	0	0	1	0
SPR_00437	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	1	0	0	1	0
SPR_00438	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	0	0	0	0	0
SPR_00452	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00455	tRNA links to Rfam database...	0.73	0.76	0.70	16	2827	7	4	3	0	5
SPR_00456	tRNA links to Rfam database...	0.52	0.57	0.48	12	2825	14	2	11	1	9
SPR_00476	tRNA links to Rfam database...	0.76	0.76	0.76	16	2754	5	1	4	0	5
SPR_00479	tRNA links to Rfam database...	0.63	0.57	0.71	12	2833	6	0	5	1	9
SPR_00482	tRNA links to Rfam database...	0.87	0.81	0.94	17	2683	1	0	1	0	4
SPR_00483	tRNA links to Rfam database...	0.83	0.81	0.85	17	2830	4	0	3	1	4
SPR_00487	tRNA links to Rfam database...	0.88	0.77	1.00	17	2684	0	0	0	0	5
SPR_00493	tRNA links to Rfam database...	0.95	0.95	0.95	21	2753	1	0	1	0	1
SPR_00496	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	0	0	0	0	0
SPR_00497	tRNA links to Rfam database...	0.76	0.76	0.76	16	2754	5	1	4	0	5
SPR_00502	tRNA links to Rfam database...	0.85	0.81	0.89	17	2907	2	0	2	0	4
SPR_00504	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	0	0	0	0	0
SPR_00505	tRNA links to Rfam database...	0.89	0.80	1.00	16	2910	0	0	0	0	4
SPR_00506	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00509	tRNA links to Rfam database...	0.51	0.55	0.48	11	2903	12	0	12	0	9
SPR_00512	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00513	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00518	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00548	tRNA links to Rfam database...	0.86	0.86	0.86	18	3382	3	2	1	0	3
SPR_00557	tRNA links to Rfam database...	0.18	0.19	0.18	4	2828	18	3	15	0	17
SPR_00561	tRNA links to Rfam database...	0.39	0.43	0.36	9	2825	16	1	15	0	12
SPR_00590	tRNA links to Rfam database...	0.95	0.95	0.95	19	2983	2	0	1	1	1
SPR_00593	tRNA links to Rfam database...	0.65	0.63	0.67	12	2757	7	1	5	1	7
SPR_00595	tRNA links to Rfam database...	0.78	0.76	0.80	16	2755	4	2	2	0	5
SPR_00598	tRNA links to Rfam database...	0.78	0.76	0.80	16	2983	5	0	4	1	5
SPR_00610	tRNA links to Rfam database...	0.87	0.81	0.94	17	2538	2	0	1	1	4
SPR_00620	tRNA links to Rfam database...	0.76	0.76	0.76	16	2982	6	3	2	1	5
SPR_00721	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	1	0	0	1	0
SPR_00722	tRNA links to Rfam database...	0.80	0.80	0.80	16	2906	4	3	1	0	4
SPR_00758	tRNA links to Rfam database...	0.48	0.52	0.44	11	2978	15	3	11	1	10
SPR_00760	tRNA links to Rfam database...	0.32	0.33	0.32	7	3548	17	0	15	2	14
SPR_00777	tRNA links to Rfam database...	0.49	0.55	0.44	11	2603	14	5	9	0	9
SPR_00867	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	2	0	0	2	0
SPR_00868	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	3	0	0	3	0
SPR_00943	tRNA links to Rfam database...	1.00	1.00	1.00	20	2536	1	0	0	1	0
SPR_00957	tRNA links to Rfam database...	0.81	0.81	0.81	17	2982	5	0	4	1	4
SPR_01040	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	1	0	0	1	0
SPR_01088	tRNA links to Rfam database...	0.18	0.19	0.19	4	2905	19	0	17	2	17
SPR_01095	tRNA links to Rfam database...	0.76	0.76	0.76	16	2829	6	0	5	1	5
SPR_01106	tRNA links to Rfam database...	0.98	0.95	1.00	20	2536	1	0	0	1	1
SPR_01117	tRNA links to Rfam database...	0.53	0.52	0.55	11	2983	9	0	9	0	10
SPR_01157	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	2	0	0	2	0
SRP_00006	Metazoa_SRP links to Rfam database...	0.94	0.92	0.97	93	45657	6	0	3	3	8
SRP_00008	Bacteria_small_SRP links to Rfam database...	1.00	1.00	1.00	25	2901	0	0	0	0	0
SRP_00011	Plant_SRP links to Rfam database...	0.40	0.38	0.43	39	46270	52	5	46	1	65
SRP_00015	Plant_SRP links to Rfam database...	0.78	0.73	0.83	72	46273	19	2	13	4	27
SRP_00020	Bacteria_small_SRP links to Rfam database...	0.77	0.79	0.76	26	5531	8	1	7	0	7
SRP_00024	Bacteria_large_SRP links to Rfam database...	0.48	0.45	0.53	39	37601	35	5	30	0	48
SRP_00026	Bacteria_large_SRP links to Rfam database...	0.71	0.69	0.73	61	36772	27	4	19	4	27
SRP_00027	Bacteria_large_SRP links to Rfam database...	0.67	0.62	0.73	54	37054	21	0	20	1	33
SRP_00030	Bacteria_large_SRP links to Rfam database...	0.78	0.78	0.78	69	36767	20	3	17	0	19
SRP_00031	Bacteria_large_SRP links to Rfam database...	0.64	0.64	0.63	57	36225	36	5	28	3	32
SRP_00037	Bacteria_large_SRP links to Rfam database...	0.63	0.61	0.65	53	36504	28	3	25	0	34
SRP_00038	Bacteria_small_SRP links to Rfam database...	0.03	0.03	0.03	1	5020	29	2	27	0	32
SRP_00042	Bacteria_small_SRP links to Rfam database...	0.57	0.60	0.56	15	3978	14	1	11	2	10
SRP_00044	Bacteria_small_SRP links to Rfam database...	0.89	0.91	0.88	29	6072	5	1	3	1	3
SRP_00046	Bacteria_small_SRP links to Rfam database...	0.97	0.97	0.97	31	4721	2	0	1	1	1
SRP_00050	Metazoa_SRP links to Rfam database...	0.93	0.91	0.95	90	44755	6	1	4	1	9
SRP_00051	Bacteria_small_SRP links to Rfam database...	0.33	0.30	0.36	9	5435	18	4	12	2	21
SRP_00054	Bacteria_small_SRP links to Rfam database...	0.26	0.25	0.28	8	5536	21	3	18	0	24
SRP_00057	Bacteria_small_SRP links to Rfam database...	0.79	0.80	0.78	28	6292	9	1	7	1	7
SRP_00058	Bacteria_small_SRP links to Rfam database...	0.87	0.88	0.86	30	5743	9	1	4	4	4
SRP_00066	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	45359	92	8	84	0	100
SRP_00072	Bacteria_small_SRP links to Rfam database...	0.31	0.31	0.31	9	6299	21	1	19	1	20
SRP_00074	Bacteria_small_SRP links to Rfam database...	0.16	0.17	0.16	5	6523	31	4	23	4	24
SRP_00075	Bacteria_small_SRP links to Rfam database...	0.58	0.59	0.57	20	5530	17	2	13	2	14
SRP_00077	Bacteria_small_SRP links to Rfam database...	0.34	0.32	0.36	12	6637	21	2	19	0	25
SRP_00081	Bacteria_small_SRP links to Rfam database...	0.64	0.68	0.60	21	5530	14	1	13	0	10
SRP_00084	Bacteria_small_SRP links to Rfam database...	0.78	0.79	0.77	27	5425	8	1	7	0	7
SRP_00086	Metazoa_SRP links to Rfam database...	0.72	0.71	0.72	71	44155	29	1	26	2	29
SRP_00088	Bacteria_large_SRP links to Rfam database...	0.75	0.71	0.80	63	34112	16	3	13	0	26
SRP_00089	Bacteria_large_SRP links to Rfam database...	0.91	0.89	0.94	80	35693	5	1	4	0	10
SRP_00090	Bacteria_large_SRP links to Rfam database...	0.83	0.81	0.85	73	35425	15	0	13	2	17
SRP_00094	Bacteria_small_SRP links to Rfam database...	0.84	0.88	0.81	21	4069	6	1	4	1	3
SRP_00095	Bacteria_small_SRP links to Rfam database...	0.40	0.40	0.42	10	3981	14	5	9	0	15
SRP_00098	Bacteria_small_SRP links to Rfam database...	0.76	0.78	0.74	29	6402	12	1	9	2	8
SRP_00102	Metazoa_SRP links to Rfam database...	0.78	0.75	0.81	76	44457	18	0	18	0	25
SRP_00103	Metazoa_SRP links to Rfam database...	0.57	0.53	0.61	54	45362	37	3	32	2	48
SRP_00105	Bacteria_small_SRP links to Rfam database...	0.17	0.15	0.20	5	5540	20	2	18	0	29
SRP_00107	Bacteria_small_SRP links to Rfam database...	0.14	0.16	0.13	3	3632	22	6	14	2	16
SRP_00121	Bacteria_small_SRP links to Rfam database...	0.80	0.80	0.80	20	4253	6	0	5	1	5
SRP_00128	Bacteria_small_SRP links to Rfam database...	0.76	0.81	0.73	29	6746	12	1	10	1	7
SRP_00132	Bacteria_small_SRP links to Rfam database...	0.69	0.72	0.66	21	4819	14	0	11	3	8
SRP_00134	Bacteria_large_SRP links to Rfam database...	0.61	0.66	0.58	19	5962	18	3	11	4	10
SRP_00141	Bacteria_small_SRP links to Rfam database...	0.74	0.71	0.78	29	6291	8	1	7	0	12
SRP_00152	Plant_SRP links to Rfam database...	0.54	0.49	0.61	50	45671	32	8	24	0	53
SRP_00161	Bacteria_small_SRP links to Rfam database...	0.86	0.86	0.86	19	2828	3	0	3	0	3
SRP_00162	Bacteria_small_SRP links to Rfam database...	0.89	0.91	0.88	21	2902	5	0	3	2	2
SRP_00163	Bacteria_small_SRP links to Rfam database...	0.86	0.85	0.88	22	3461	3	0	3	0	4
SRP_00164	Bacteria_small_SRP links to Rfam database...	0.39	0.40	0.38	14	6866	23	3	20	0	21
SRP_00170	Bacteria_small_SRP links to Rfam database...	0.72	0.68	0.77	17	4073	6	1	4	1	8
SRP_00171	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	45405	46	8	38	0	88
SRP_00173	Bacteria_large_SRP links to Rfam database...	0.79	0.78	0.80	70	38138	20	3	15	2	20
SRP_00174	Bacteria_large_SRP links to Rfam database...	0.78	0.76	0.81	65	38701	19	4	11	4	21
SRP_00178	Plant_SRP links to Rfam database...	0.77	0.73	0.82	74	45663	18	6	10	2	28
SRP_00179	Plant_SRP links to Rfam database...	0.81	0.75	0.88	79	45966	15	4	7	4	26
SRP_00181	Plant_SRP links to Rfam database...	0.53	0.45	0.62	46	45982	28	4	24	0	56
SRP_00182	Plant_SRP links to Rfam database...	0.58	0.56	0.61	57	45962	40	10	27	3	44
SRP_00184	Plant_SRP links to Rfam database...	0.60	0.53	0.69	53	45979	28	6	18	4	47
SRP_00188	Plant_SRP links to Rfam database...	0.22	0.22	0.23	17	31050	58	7	51	0	62
SRP_00194	Bacteria_small_SRP links to Rfam database...	0.77	0.81	0.74	17	3217	10	0	6	4	4
SRP_00200	Bacteria_small_SRP links to Rfam database...	0.79	0.81	0.78	29	6866	9	1	7	1	7
SRP_00209	Bacteria_small_SRP links to Rfam database...	0.58	0.59	0.57	16	4628	13	1	11	1	11
SRP_00213	Bacteria_small_SRP links to Rfam database...	0.71	0.68	0.74	17	4163	6	1	5	0	8
SRP_00215	Bacteria_small_SRP links to Rfam database...	0.82	0.80	0.83	20	3216	4	0	4	0	5
SRP_00227	Bacteria_small_SRP links to Rfam database...	0.92	0.94	0.91	29	5119	3	1	2	0	2
SRP_00228	Metazoa_SRP links to Rfam database...	0.93	0.92	0.94	87	45358	12	0	6	6	8
SRP_00231	Bacteria_small_SRP links to Rfam database...	0.90	0.91	0.89	31	5425	4	1	3	0	3
SRP_00233	Bacteria_small_SRP links to Rfam database...	0.90	0.82	1.00	27	5124	0	0	0	0	6
SRP_00234	Bacteria_large_SRP links to Rfam database...	0.80	0.79	0.82	68	36232	21	0	15	6	18
SRP_00243	Bacteria_small_SRP links to Rfam database...	0.97	0.94	1.00	29	5122	1	0	0	1	2
SRP_00244	Bacteria_small_SRP links to Rfam database...	0.60	0.51	0.71	20	6875	8	0	8	0	19
SRP_00250	Bacteria_small_SRP links to Rfam database...	0.77	0.81	0.74	29	6747	12	1	9	2	7
SRP_00251	Bacteria_small_SRP links to Rfam database...	0.74	0.78	0.70	28	6981	12	1	11	0	8
SRP_00266	Bacteria_small_SRP links to Rfam database...	0.77	0.69	0.87	20	4633	4	0	3	1	9
SRP_00268	Bacteria_small_SRP links to Rfam database...	0.86	0.81	0.92	22	4162	2	1	1	0	5
SRP_00269	Bacteria_small_SRP links to Rfam database...	0.45	0.42	0.48	14	5021	15	2	13	0	19
SRP_00270	Bacteria_small_SRP links to Rfam database...	0.43	0.45	0.41	14	4622	20	2	18	0	17
SRP_00271	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	3215	25	4	21	0	24
SRP_00273	Bacteria_small_SRP links to Rfam database...	0.81	0.83	0.80	33	6745	9	1	7	1	7
SRP_00274	Bacteria_small_SRP links to Rfam database...	0.93	0.95	0.92	36	6864	3	1	2	0	2
SRP_00295	Bacteria_small_SRP links to Rfam database...	0.96	0.97	0.95	37	6864	4	1	1	2	1
SRP_00303	Bacteria_small_SRP links to Rfam database...	0.81	0.84	0.77	27	6635	8	1	7	0	5
SRP_00308	Bacteria_large_SRP links to Rfam database...	0.69	0.67	0.71	59	36232	27	5	19	3	29
SRP_00310	Bacteria_small_SRP links to Rfam database...	0.89	0.91	0.88	21	2902	4	0	3	1	2
SRP_00312	Bacteria_small_SRP links to Rfam database...	0.38	0.37	0.40	10	4161	15	3	12	0	17
SRP_00315	Bacteria_small_SRP links to Rfam database...	0.87	0.87	0.87	20	2903	3	0	3	0	3
SRP_00317	Metazoa_SRP links to Rfam database...	0.79	0.77	0.82	75	45058	23	0	17	6	23
SRP_00318	Bacteria_small_SRP links to Rfam database...	0.87	0.87	0.87	20	2980	3	0	3	0	3
SRP_00325	Bacteria_small_SRP links to Rfam database...	0.98	0.97	1.00	32	4339	0	0	0	0	1
SRP_00326	Bacteria_small_SRP links to Rfam database...	0.56	0.58	0.55	18	5017	15	3	12	0	13
SRP_00333	Bacteria_small_SRP links to Rfam database...	0.86	0.85	0.88	29	5118	4	0	4	0	5
SRP_00335	Bacteria_large_SRP links to Rfam database...	0.32	0.44	0.23	17	35172	76	26	30	20	22
SRP_00337	Bacteria_large_SRP links to Rfam database...	0.76	0.77	0.76	70	35419	25	2	20	3	21
SRP_00338	Bacteria_small_SRP links to Rfam database...	0.97	0.97	0.97	35	5424	1	0	1	0	1
SRP_00341	Bacteria_small_SRP links to Rfam database...	0.42	0.42	0.42	13	4722	18	0	18	0	18
SRP_00342	Bacteria_small_SRP links to Rfam database...	0.61	0.64	0.59	16	3978	16	1	10	5	9
SRP_00347	Metazoa_SRP links to Rfam database...	0.75	0.71	0.80	68	46580	19	4	13	2	28
SRP_00350	Bacteria_small_SRP links to Rfam database...	0.44	0.37	0.53	10	3897	9	1	8	0	17
SRP_00356	Bacteria_small_SRP links to Rfam database...	0.83	0.80	0.86	24	5022	4	0	4	0	6
SRP_00357	Bacteria_small_SRP links to Rfam database...	0.96	0.97	0.95	35	5319	3	1	1	1	1
SRP_00358	Bacteria_small_SRP links to Rfam database...	0.96	0.97	0.94	34	6292	3	1	1	1	1
SRP_00367	Bacteria_small_SRP links to Rfam database...	0.96	0.97	0.94	34	6750	2	1	1	0	1
SRP_00368	Metazoa_SRP links to Rfam database...	0.71	0.67	0.75	66	43868	25	5	17	3	32
SRP_00369	Bacteria_small_SRP links to Rfam database...	0.96	0.97	0.94	34	5742	3	1	1	1	1
SRP_00383	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	3222	18	1	17	0	24
TMR_00017	tmRNA links to Rfam database...	0.55	0.41	0.74	42	67104	19	0	15	4	60
TMR_00018	tmRNA links to Rfam database...	0.45	0.38	0.52	35	64553	36	10	22	4	57
TMR_00038	tmRNA links to Rfam database...	0.27	0.25	0.28	28	71153	78	14	58	6	82
TMR_00042	tmRNA links to Rfam database...	0.38	0.34	0.42	33	62757	48	6	39	3	65
TMR_00046	tmRNA links to Rfam database...	0.60	0.56	0.64	54	62750	37	4	27	6	42
TMR_00048	tmRNA links to Rfam database...	0.48	0.46	0.49	44	64890	55	8	38	9	51
TMR_00080	tmRNA links to Rfam database...	0.42	0.36	0.49	35	70428	37	7	30	0	61
TMR_00082	tmRNA links to Rfam database...	0.29	0.26	0.32	25	67818	53	9	44	0	71
TMR_00123	tmRNA links to Rfam database...	0.56	0.50	0.63	50	66350	35	3	27	5	51
TMR_00137	tmRNA links to Rfam database...	0.34	0.27	0.43	24	61019	40	3	29	8	65
TMR_00142	tmRNA links to Rfam database...	0.61	0.58	0.64	59	70784	46	8	25	13	43
TMR_00207	tmRNA links to Rfam database...	0.46	0.38	0.55	39	72319	37	4	28	5	64
TMR_00257	tmRNA links to Rfam database...	0.26	0.20	0.33	20	67101	45	1	39	5	78
TMR_00271	tmRNA links to Rfam database...	0.62	0.57	0.68	52	64184	36	6	19	11	39
TMR_00332	tmRNA links to Rfam database...	0.43	0.35	0.53	35	67095	36	1	30	5	64
TMR_00366	tmRNA links to Rfam database...	0.52	0.45	0.59	45	67820	42	11	20	11	55
TMR_00378	tmRNA links to Rfam database...	0.36	0.30	0.44	29	67830	47	8	29	10	68
TMR_00399	tmRNA links to Rfam database...	0.41	0.35	0.47	33	64910	43	11	26	6	61
TMR_00404	tmRNA links to Rfam database...	0.60	0.58	0.62	53	67443	49	6	26	17	39
TMR_00427	tmRNA links to Rfam database...	0.44	0.34	0.56	33	67469	31	8	18	5	64
TMR_00443	tmRNA links to Rfam database...	0.62	0.50	0.76	52	67093	23	6	10	7	52
TMR_00451	tmRNA links to Rfam database...	0.23	0.19	0.27	17	63483	50	12	34	4	72
TMR_00458	tmRNA links to Rfam database...	0.35	0.29	0.42	27	63481	45	8	30	7	66
TMR_00469	tmRNA links to Rfam database...	0.57	0.52	0.63	52	64537	35	10	21	4	48
TMR_00472	tmRNA links to Rfam database...	0.52	0.42	0.63	41	64555	29	6	18	5	56
TMR_00519	tmRNA links to Rfam database...	0.40	0.31	0.54	29	63136	38	5	20	13	66
TMR_00520	tmRNA links to Rfam database...	0.50	0.42	0.60	42	63120	38	4	24	10	57
TMR_00522	tmRNA links to Rfam database...	0.41	0.35	0.47	34	63118	47	8	30	9	63
TMR_00528	tmRNA links to Rfam database...	0.41	0.36	0.46	35	63114	51	12	29	10	62
TMR_00540	tmRNA links to Rfam database...	0.37	0.34	0.40	35	73449	60	7	45	8	69
TMR_00568	tmRNA links to Rfam database...	0.53	0.49	0.56	49	60639	44	4	34	6	50
TMR_00571	tmRNA links to Rfam database...	0.61	0.53	0.70	52	60652	30	6	16	8	47
TMR_00580	tmRNA links to Rfam database...	0.44	0.41	0.47	41	60638	50	10	37	3	59
TMR_00584	tmRNA links to Rfam database...	0.67	0.61	0.75	59	60996	30	1	19	10	38
TMR_00586	tmRNA links to Rfam database...	0.42	0.41	0.43	40	60981	59	10	44	5	57
TMR_00616	tmRNA links to Rfam database...	0.45	0.41	0.49	41	67078	50	9	33	8	58
TMR_00699	tmRNA links to Rfam database...	0.54	0.46	0.63	47	67086	33	3	25	5	55
TMR_00702	tmRNA links to Rfam database...	0.35	0.27	0.46	27	67102	39	5	27	7	73
TMR_00703	tmRNA links to Rfam database...	0.56	0.48	0.64	48	67453	34	5	22	7	51

^top

Performance of RSpredict(20) - scored lower in this pairwise comparison

1. Total counts & total scores for RSpredict(20)

Total Base Pair Counts
Total TP	28233
Total TN	117667311
Total FP	22098
Total FP CONTRA	3030
Total FP INCONS	16156
Total FP COMP	2912
Total FN	41467

Total Scores
MCC	0.491
Average MCC ± 95% Confidence Intervals	0.590 ± 0.024
Sensitivity	0.405
Positive Predictive Value	0.595
Nr of predictions	641

^top

2. Individual counts for RSpredict(20) [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00004	RNaseP_bact_a links to Rfam database...	0.66	0.49	0.89	48	47841	10	0	6	4	49
ASE_00005	RNaseP_bact_a links to Rfam database...	0.35	0.19	0.67	22	57937	11	0	11	0	95
ASE_00006	RNaseP_bact_a links to Rfam database...	0.28	0.13	0.60	12	47566	8	0	8	0	81
ASE_00007	RNaseP_bact_a links to Rfam database...	0.25	0.10	0.65	11	59668	6	0	6	0	99
ASE_00012	RNaseP_bact_a links to Rfam database...	0.16	0.07	0.42	8	73901	14	0	11	3	115
ASE_00018	RNaseP_bact_a links to Rfam database...	0.15	0.07	0.30	10	80568	23	0	23	0	124
ASE_00020	RNaseP_bact_a links to Rfam database...	0.32	0.21	0.50	26	73868	28	6	20	2	100
ASE_00021	RNaseP_bact_a links to Rfam database...	0.16	0.08	0.32	12	104159	28	0	25	3	148
ASE_00022	RNaseP_bact_b links to Rfam database...	0.51	0.44	0.61	54	82939	41	5	30	6	70
ASE_00028	RNaseP_bact_b links to Rfam database...	0.68	0.59	0.80	74	84573	27	1	18	8	52
ASE_00035	RNaseP_bact_a links to Rfam database...	0.50	0.37	0.68	44	70435	26	3	18	5	74
ASE_00037	RNaseP_bact_a links to Rfam database...	0.27	0.17	0.43	19	59296	27	1	24	2	91
ASE_00038	RNaseP_bact_a links to Rfam database...	0.10	0.05	0.19	5	53602	21	3	18	0	96
ASE_00040	RNaseP_bact_a links to Rfam database...	0.20	0.09	0.46	12	78977	14	0	14	0	121
ASE_00041	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	57611	19	1	18	0	108
ASE_00042	RNaseP_bact_a links to Rfam database...	0.23	0.12	0.47	17	90064	20	1	18	1	128
ASE_00044	RNaseP_bact_a links to Rfam database...	0.21	0.08	0.57	8	54601	9	0	6	3	97
ASE_00045	RNaseP_bact_b links to Rfam database...	0.61	0.53	0.71	42	47219	20	2	15	3	38
ASE_00064	RNaseP_bact_a links to Rfam database...	0.19	0.11	0.33	10	45421	22	3	17	2	79
ASE_00068	RNaseP_bact_a links to Rfam database...	0.37	0.25	0.57	21	37638	21	1	15	5	64
ASE_00074	RNaseP_bact_a links to Rfam database...	0.23	0.13	0.41	15	67859	24	0	22	2	104
ASE_00075	RNaseP_bact_a links to Rfam database...	0.10	0.05	0.20	8	108771	32	1	31	0	154
ASE_00077	RNaseP_bact_a links to Rfam database...	0.09	0.03	0.21	3	45136	14	1	10	3	83
ASE_00078	RNaseP_bact_a links to Rfam database...	0.57	0.39	0.84	32	43033	8	1	5	2	51
ASE_00080	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	71612	21	2	17	2	123
ASE_00081	RNaseP_bact_a links to Rfam database...	0.14	0.06	0.33	6	49752	13	1	11	1	91
ASE_00082	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	70476	25	3	21	1	116
ASE_00083	RNaseP_bact_a links to Rfam database...	0.14	0.06	0.32	7	62459	17	0	15	2	103
ASE_00084	RNaseP_bact_a links to Rfam database...	0.12	0.06	0.24	6	53603	21	0	19	2	93
ASE_00087	RNaseP_bact_a links to Rfam database...	0.39	0.26	0.59	37	88347	28	1	25	2	107
ASE_00090	RNaseP_bact_a links to Rfam database...	0.39	0.27	0.56	27	55563	23	3	18	2	74
ASE_00092	RNaseP_bact_a links to Rfam database...	0.15	0.07	0.31	8	63520	19	2	16	1	105
ASE_00099	RNaseP_bact_a links to Rfam database...	0.45	0.27	0.76	32	64578	12	1	9	2	88
ASE_00104	RNaseP_bact_a links to Rfam database...	0.23	0.11	0.50	13	64235	14	0	13	1	106
ASE_00105	RNaseP_bact_a links to Rfam database...	0.15	0.06	0.35	7	64241	17	0	13	4	104
ASE_00107	RNaseP_bact_a links to Rfam database...	0.74	0.61	0.89	78	73065	15	3	7	5	49
ASE_00114	RNaseP_bact_b links to Rfam database...	0.45	0.38	0.54	29	45397	38	1	24	13	48
ASE_00115	RNaseP_bact_a links to Rfam database...	0.39	0.27	0.56	27	54567	23	0	21	2	74
ASE_00118	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	60705	22	0	21	1	102
ASE_00119	RNaseP_bact_a links to Rfam database...	0.09	0.04	0.22	4	62817	17	1	13	3	104
ASE_00123	RNaseP_bact_a links to Rfam database...	0.11	0.04	0.38	3	38495	7	0	5	2	82
ASE_00125	RNaseP_bact_a links to Rfam database...	0.36	0.16	0.82	14	39323	4	0	3	1	74
ASE_00126	RNaseP_bact_a links to Rfam database...	0.29	0.15	0.57	12	40449	11	1	8	2	70
ASE_00128	RNaseP_bact_a links to Rfam database...	0.23	0.12	0.43	12	53273	17	1	15	1	88
ASE_00129	RNaseP_bact_a links to Rfam database...	0.17	0.07	0.40	8	62815	14	1	11	2	103
ASE_00131	RNaseP_bact_a links to Rfam database...	0.34	0.22	0.51	19	39303	24	0	18	6	66
ASE_00134	RNaseP_bact_a links to Rfam database...	0.47	0.34	0.67	32	50355	17	3	13	1	63
ASE_00135	RNaseP_bact_a links to Rfam database...	0.36	0.24	0.53	26	63141	25	1	22	2	83
ASE_00136	RNaseP_bact_a links to Rfam database...	0.34	0.20	0.60	18	48175	15	0	12	3	74
ASE_00137	RNaseP_bact_a links to Rfam database...	0.04	0.02	0.08	2	48491	24	2	21	1	96
ASE_00138	RNaseP_bact_a links to Rfam database...	0.68	0.59	0.79	48	40409	18	2	11	5	33
ASE_00140	RNaseP_bact_a links to Rfam database...	0.53	0.42	0.65	53	70795	33	3	25	5	72
ASE_00142	RNaseP_bact_a links to Rfam database...	0.33	0.18	0.59	22	67124	17	1	14	2	100
ASE_00146	RNaseP_bact_a links to Rfam database...	0.19	0.08	0.43	10	70853	14	2	11	1	114
ASE_00153	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	57614	24	5	11	8	73
ASE_00161	RNaseP_bact_b links to Rfam database...	0.60	0.55	0.66	48	53555	33	3	22	8	39
ASE_00163	RNaseP_bact_a links to Rfam database...	0.03	0.01	0.09	1	53290	14	1	9	4	92
ASE_00165	RNaseP_bact_a links to Rfam database...	0.17	0.09	0.35	9	52949	18	4	13	1	92
ASE_00170	RNaseP_bact_a links to Rfam database...	0.47	0.33	0.67	31	48782	17	1	14	2	62
ASE_00171	RNaseP_bact_a links to Rfam database...	0.20	0.09	0.47	8	48499	12	2	7	3	86
ASE_00172	RNaseP_bact_a links to Rfam database...	0.41	0.23	0.73	24	58963	11	1	8	2	82
ASE_00174	RNaseP_bact_a links to Rfam database...	0.16	0.07	0.35	8	61052	16	1	14	1	101
ASE_00175	RNaseP_bact_a links to Rfam database...	0.41	0.25	0.68	27	59991	15	1	12	2	80
ASE_00179	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	44238	16	2	13	1	84
ASE_00180	RNaseP_bact_a links to Rfam database...	0.21	0.09	0.50	9	51342	13	1	8	4	91
ASE_00181	RNaseP_bact_a links to Rfam database...	0.32	0.16	0.63	17	57603	10	0	10	0	89
ASE_00182	RNaseP_bact_a links to Rfam database...	0.15	0.09	0.27	12	84210	35	3	30	2	124
ASE_00183	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	61405	20	0	20	0	113
ASE_00184	RNaseP_bact_a links to Rfam database...	0.17	0.06	0.50	6	54603	8	0	6	2	96
ASE_00185	RNaseP_bact_a links to Rfam database...	0.13	0.07	0.26	9	73501	29	0	26	3	119
ASE_00186	RNaseP_bact_a links to Rfam database...	0.24	0.13	0.46	17	78966	22	1	19	2	115
ASE_00190	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	45434	18	4	13	1	90
ASE_00197	RNaseP_bact_a links to Rfam database...	0.04	0.02	0.10	3	89222	28	0	28	0	142
ASE_00198	RNaseP_bact_a links to Rfam database...	0.06	0.02	0.18	2	52639	10	0	9	1	100
ASE_00203	RNaseP_bact_a links to Rfam database...	0.16	0.06	0.43	6	46651	8	0	8	0	90
ASE_00212	RNaseP_bact_a links to Rfam database...	0.21	0.11	0.40	17	93918	26	4	22	0	131
ASE_00214	RNaseP_bact_a links to Rfam database...	0.18	0.09	0.38	9	56256	18	0	15	3	94
ASE_00215	RNaseP_bact_a links to Rfam database...	0.22	0.15	0.31	15	48468	34	1	32	1	84
ASE_00216	RNaseP_bact_a links to Rfam database...	0.19	0.09	0.41	7	39323	10	0	10	0	75
ASE_00217	RNaseP_bact_a links to Rfam database...	0.11	0.04	0.27	4	40455	11	0	11	0	86
ASE_00221	RNaseP_bact_a links to Rfam database...	0.26	0.13	0.54	15	64592	14	0	13	1	102
ASE_00228	RNaseP_bact_a links to Rfam database...	0.72	0.63	0.82	54	46905	18	3	9	6	32
ASE_00229	RNaseP_bact_a links to Rfam database...	0.56	0.39	0.81	34	42444	9	2	6	1	53
ASE_00231	RNaseP_bact_a links to Rfam database...	0.18	0.08	0.40	8	47875	15	0	12	3	88
ASE_00232	RNaseP_bact_a links to Rfam database...	0.82	0.71	0.94	60	38439	9	1	3	5	24
ASE_00234	RNaseP_bact_a links to Rfam database...	0.30	0.19	0.47	24	75415	28	4	23	1	105
ASE_00238	RNaseP_bact_a links to Rfam database...	0.02	0.01	0.04	1	64236	27	1	23	3	113
ASE_00241	RNaseP_bact_a links to Rfam database...	0.67	0.60	0.75	52	43887	22	2	15	5	35
ASE_00242	RNaseP_bact_a links to Rfam database...	0.29	0.14	0.57	16	61047	14	0	12	2	96
ASE_00248	RNaseP_bact_a links to Rfam database...	0.30	0.16	0.58	18	62450	16	0	13	3	96
ASE_00254	RNaseP_bact_a links to Rfam database...	0.29	0.12	0.71	10	36842	6	0	4	2	72
ASE_00255	RNaseP_bact_a links to Rfam database...	0.29	0.15	0.59	19	74659	16	1	12	3	111
ASE_00257	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	51014	29	3	23	3	97
ASE_00263	RNaseP_bact_a links to Rfam database...	0.33	0.23	0.46	28	70439	34	2	31	1	92
ASE_00267	RNaseP_bact_a links to Rfam database...	0.45	0.32	0.65	28	45107	17	1	14	2	60
ASE_00270	RNaseP_bact_a links to Rfam database...	0.24	0.14	0.42	18	72347	26	1	24	1	110
ASE_00274	RNaseP_bact_a links to Rfam database...	0.18	0.07	0.47	7	55596	11	1	7	3	96
ASE_00277	RNaseP_bact_a links to Rfam database...	0.11	0.05	0.24	5	48184	18	4	12	2	86
ASE_00279	RNaseP_bact_a links to Rfam database...	0.61	0.48	0.79	48	53240	18	2	11	5	53
ASE_00280	RNaseP_bact_a links to Rfam database...	0.63	0.54	0.74	53	51931	23	0	19	4	45
ASE_00281	RNaseP_bact_a links to Rfam database...	0.23	0.09	0.57	8	44537	8	0	6	2	80
ASE_00282	RNaseP_bact_a links to Rfam database...	0.14	0.06	0.31	8	77789	20	2	16	2	119
ASE_00283	RNaseP_bact_a links to Rfam database...	0.66	0.50	0.86	54	61713	13	0	9	4	53
ASE_00284	RNaseP_bact_a links to Rfam database...	0.27	0.14	0.54	15	58283	16	0	13	3	93
ASE_00285	RNaseP_bact_a links to Rfam database...	0.39	0.25	0.60	31	68954	22	3	18	1	91
ASE_00286	RNaseP_bact_a links to Rfam database...	0.24	0.11	0.53	10	46646	12	0	9	3	82
ASE_00287	RNaseP_bact_a links to Rfam database...	0.16	0.08	0.33	8	54922	16	4	12	0	95
ASE_00292	RNaseP_bact_a links to Rfam database...	0.20	0.11	0.37	15	81769	28	1	25	2	123
ASE_00294	RNaseP_bact_a links to Rfam database...	0.15	0.08	0.29	14	114432	37	1	34	2	157
ASE_00296	RNaseP_bact_a links to Rfam database...	0.12	0.06	0.22	9	91765	32	2	30	0	136
ASE_00297	RNaseP_bact_a links to Rfam database...	0.21	0.10	0.45	10	52953	14	0	12	2	88
ASE_00298	RNaseP_bact_a links to Rfam database...	0.24	0.12	0.50	13	67502	15	1	12	2	100
ASE_00305	RNaseP_bact_b links to Rfam database...	0.70	0.67	0.73	57	54537	38	1	20	17	28
ASE_00318	RNaseP_bact_b links to Rfam database...	0.60	0.48	0.74	57	80123	31	2	18	11	61
ASE_00321	RNaseP_bact_b links to Rfam database...	0.62	0.58	0.67	51	54539	36	2	23	11	37
ASE_00328	RNaseP_bact_b links to Rfam database...	0.63	0.56	0.71	63	72682	35	1	25	9	49
ASE_00332	RNaseP_bact_a links to Rfam database...	0.24	0.12	0.49	17	81775	19	0	18	1	121
ASE_00335	RNaseP_bact_b links to Rfam database...	0.68	0.61	0.76	71	75372	32	2	21	9	45
ASE_00340	RNaseP_bact_a links to Rfam database...	0.59	0.41	0.83	35	46014	10	2	5	3	50
ASE_00342	RNaseP_bact_a links to Rfam database...	0.57	0.39	0.83	45	62427	11	2	7	2	70
ASE_00353	RNaseP_bact_a links to Rfam database...	0.29	0.12	0.68	13	57951	8	0	6	2	94
ASE_00361	RNaseP_bact_a links to Rfam database...	0.03	0.01	0.10	1	75456	11	0	9	2	126
ASE_00362	RNaseP_bact_a links to Rfam database...	0.17	0.08	0.37	7	48186	14	0	12	2	84
ASE_00363	RNaseP_bact_a links to Rfam database...	0.39	0.26	0.60	24	51320	18	1	15	2	70
ASE_00364	RNaseP_bact_a links to Rfam database...	0.08	0.04	0.17	4	54262	19	0	19	0	101
ASE_00366	RNaseP_bact_a links to Rfam database...	0.06	0.03	0.10	3	58624	26	4	22	0	95
ASE_00367	RNaseP_bact_a links to Rfam database...	0.27	0.15	0.50	13	43045	15	2	11	2	73
ASE_00369	RNaseP_bact_a links to Rfam database...	0.43	0.26	0.72	28	55906	15	0	11	4	79
ASE_00370	RNaseP_bact_a links to Rfam database...	0.13	0.06	0.29	5	41888	13	1	11	1	79
ASE_00372	RNaseP_bact_a links to Rfam database...	0.44	0.29	0.67	29	51960	15	2	12	1	71
ASE_00374	RNaseP_bact_a links to Rfam database...	0.03	0.01	0.07	1	44836	19	0	13	6	87
ASE_00376	RNaseP_bact_a links to Rfam database...	0.43	0.25	0.76	26	56919	10	0	8	2	79
ASE_00377	RNaseP_bact_a links to Rfam database...	0.18	0.09	0.36	10	57602	19	1	17	1	97
ASE_00379	RNaseP_bact_a links to Rfam database...	0.47	0.29	0.74	26	46021	11	1	8	2	63
ASE_00382	RNaseP_bact_a links to Rfam database...	0.57	0.42	0.78	35	41860	12	1	9	2	49
ASE_00383	RNaseP_bact_a links to Rfam database...	0.17	0.08	0.38	8	54594	15	2	11	2	97
ASE_00384	RNaseP_bact_a links to Rfam database...	0.19	0.10	0.38	9	48492	18	1	14	3	83
ASE_00386	RNaseP_bact_a links to Rfam database...	0.13	0.05	0.33	5	50388	11	0	10	1	91
ASE_00387	RNaseP_bact_a links to Rfam database...	0.24	0.12	0.50	12	55921	15	1	11	3	92
ASE_00388	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	45739	14	1	13	0	89
ASE_00390	RNaseP_bact_a links to Rfam database...	0.50	0.35	0.71	30	42153	16	1	11	4	55
ASE_00393	RNaseP_bact_a links to Rfam database...	0.36	0.22	0.61	20	47862	15	1	12	2	73
ASE_00394	RNaseP_bact_a links to Rfam database...	0.71	0.60	0.84	56	46904	17	2	9	6	37
ASE_00395	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	41595	22	1	20	1	84
ASE_00396	RNaseP_bact_a links to Rfam database...	0.02	0.01	0.05	1	41597	20	0	18	2	82
ASE_00397	RNaseP_bact_a links to Rfam database...	0.31	0.17	0.55	18	54582	17	2	13	2	87
ASE_00398	RNaseP_bact_a links to Rfam database...	0.15	0.08	0.30	8	55918	22	0	19	3	96
ASE_00400	RNaseP_bact_a links to Rfam database...	0.28	0.15	0.53	16	57940	18	1	13	4	90
ASE_00401	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	77010	20	0	18	2	126
ASE_00402	RNaseP_bact_a links to Rfam database...	0.12	0.05	0.31	4	42473	11	0	9	2	81
ASE_00403	RNaseP_bact_a links to Rfam database...	0.44	0.27	0.73	29	55905	13	3	8	2	78
ASE_00404	RNaseP_bact_a links to Rfam database...	0.08	0.04	0.19	3	43055	18	1	12	5	82
ASE_00406	RNaseP_bact_a links to Rfam database...	0.30	0.18	0.49	17	48793	19	3	15	1	77
ASE_00411	RNaseP_bact_a links to Rfam database...	0.21	0.10	0.43	9	49434	15	1	11	3	80
ASE_00412	RNaseP_bact_a links to Rfam database...	0.15	0.08	0.30	8	58284	21	2	17	2	97
ASE_00413	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	44533	19	1	17	1	81
ASE_00415	RNaseP_bact_a links to Rfam database...	0.13	0.06	0.30	6	54926	14	2	12	0	97
ASE_00416	RNaseP_bact_a links to Rfam database...	0.08	0.02	0.27	3	77410	8	0	8	0	124
ASE_00419	RNaseP_bact_a links to Rfam database...	0.24	0.12	0.48	12	54921	14	2	11	1	91
ASE_00422	RNaseP_bact_a links to Rfam database...	0.04	0.02	0.07	2	46944	27	0	25	2	92
ASE_00423	RNaseP_bact_a links to Rfam database...	0.45	0.23	0.89	25	56925	6	0	3	3	84
ASE_00427	RNaseP_nuc links to Rfam database...	0.29	0.33	0.26	15	40697	47	22	21	4	31
ASE_00428	RNaseP_bact_a links to Rfam database...	0.04	0.02	0.13	2	76620	15	1	13	1	123
ASE_00430	RNaseP_bact_a links to Rfam database...	0.20	0.09	0.45	9	46951	11	0	11	0	88
ASE_00437	RNaseP_bact_a links to Rfam database...	0.57	0.41	0.81	55	79333	18	2	11	5	80
ASE_00441	RNaseP_bact_a links to Rfam database...	0.28	0.16	0.47	18	64223	24	1	19	4	94
ASE_00448	RNaseP_bact_a links to Rfam database...	0.58	0.46	0.74	51	64192	22	2	16	4	61
ASE_00451	RNaseP_bact_a links to Rfam database...	0.41	0.25	0.67	31	70830	17	1	14	2	94
CRW_00024	SSU_rRNA_archaea links to Rfam database...	0.78	0.76	0.80	349	1085166	117	16	70	31	109
CRW_00034	SSU_rRNA_bacteria links to Rfam database...	0.60	0.50	0.71	239	1141980	119	16	81	22	235
CRW_00048	SSU_rRNA_bacteria links to Rfam database...	0.74	0.71	0.78	332	1170788	124	21	74	29	138
CRW_00054	SSU_rRNA_bacteria links to Rfam database...	0.72	0.68	0.76	308	1107412	121	17	79	25	148
CRW_00059	SSU_rRNA_bacteria links to Rfam database...	0.73	0.68	0.78	320	1172336	118	19	71	28	153
CRW_00061	SSU_rRNA_bacteria links to Rfam database...	0.63	0.55	0.72	260	1181590	123	18	85	20	216
CRW_00068	SSU_rRNA_bacteria links to Rfam database...	0.73	0.69	0.77	314	1108895	119	18	78	23	143
CRW_00096	SSU_rRNA_bacteria links to Rfam database...	0.73	0.69	0.78	320	1178470	123	16	74	33	145
CRW_00140	SSU_rRNA_bacteria links to Rfam database...	0.73	0.68	0.79	316	1135876	116	15	71	30	147
CRW_00141	SSU_rRNA_bacteria links to Rfam database...	0.72	0.67	0.77	320	1201607	124	19	79	26	156
CRW_00150	SSU_rRNA_bacteria links to Rfam database...	0.73	0.68	0.79	315	1152520	110	20	66	24	151
CRW_00152	SSU_rRNA_bacteria links to Rfam database...	0.71	0.65	0.77	308	1180015	120	17	76	27	163
CRW_00166	SSU_rRNA_bacteria links to Rfam database...	0.73	0.68	0.79	317	1190796	115	15	68	32	151
CRW_00173	SSU_rRNA_bacteria links to Rfam database...	0.68	0.63	0.74	281	1082274	126	20	81	25	164
CRW_00177	SSU_rRNA_bacteria links to Rfam database...	0.66	0.60	0.74	283	1178495	122	22	80	20	190
CRW_00196	SSU_rRNA_bacteria links to Rfam database...	0.71	0.67	0.76	316	1207819	125	23	77	25	159
CRW_00230	SSU_rRNA_bacteria links to Rfam database...	0.72	0.67	0.77	319	1198513	119	20	74	25	159
CRW_00245	SSU_rRNA_bacteria links to Rfam database...	0.70	0.63	0.78	285	1105963	105	14	66	25	168
CRW_00248	SSU_rRNA_bacteria links to Rfam database...	0.71	0.67	0.76	322	1218719	127	19	81	27	162
CRW_00250	SSU_rRNA_bacteria links to Rfam database...	0.72	0.66	0.78	317	1198517	119	19	73	27	161
CRW_00256	SSU_rRNA_bacteria links to Rfam database...	0.71	0.62	0.81	292	1192380	91	18	50	23	176
CRW_00270	SSU_rRNA_bacteria links to Rfam database...	0.68	0.60	0.77	272	1111934	101	13	67	21	183
CRW_00271	SSU_rRNA_bacteria links to Rfam database...	0.70	0.65	0.75	301	1122349	125	21	80	24	161
CRW_00273	SSU_rRNA_bacteria links to Rfam database...	0.67	0.60	0.76	266	1085250	106	16	69	21	180
CRW_00275	SSU_rRNA_bacteria links to Rfam database...	0.73	0.69	0.77	315	1114864	116	18	74	24	142
CRW_00277	SSU_rRNA_bacteria links to Rfam database...	0.62	0.54	0.71	244	1110451	120	17	83	20	209
CRW_00278	SSU_rRNA_bacteria links to Rfam database...	0.60	0.51	0.71	231	1129930	115	14	81	20	219
CRW_00279	SSU_rRNA_bacteria links to Rfam database...	0.71	0.66	0.75	308	1180005	131	20	83	28	156
CRW_00280	SSU_rRNA_bacteria links to Rfam database...	0.71	0.66	0.75	300	1117861	125	19	80	26	153
CRW_00281	SSU_rRNA_bacteria links to Rfam database...	0.72	0.67	0.77	311	1144937	123	15	78	30	153
CRW_00284	SSU_rRNA_bacteria links to Rfam database...	0.71	0.66	0.77	301	1131370	113	18	71	24	155
CRW_00285	SSU_rRNA_bacteria links to Rfam database...	0.64	0.55	0.73	254	1117913	115	15	78	22	204
CRW_00289	SSU_rRNA_bacteria links to Rfam database...	0.70	0.66	0.76	312	1189241	126	19	81	26	164
CRW_00298	SSU_rRNA_eukarya links to Rfam database...	0.01	0.01	0.01	3	1620508	410	63	326	21	491
CRW_00301	SSU_rRNA_eukarya links to Rfam database...	0.33	0.31	0.36	161	1762053	322	46	243	33	358
CRW_00306	SSU_rRNA_eukarya links to Rfam database...	0.37	0.34	0.39	158	1445446	293	34	212	47	304
CRW_00310	SSU_rRNA_eukarya links to Rfam database...	0.02	0.02	0.02	8	1805520	442	63	359	20	513
CRW_00326	SSU_rRNA_eukarya links to Rfam database...	0.36	0.34	0.38	172	1627656	314	50	232	32	330
CRW_00330	SSU_rRNA_eukarya links to Rfam database...	0.02	0.02	0.02	8	1988575	477	82	350	45	509
CRW_00332	SSU_rRNA_eukarya links to Rfam database...	0.01	0.01	0.01	3	1769654	389	59	305	25	474
CRW_00333	SSU_rRNA_eukarya links to Rfam database...	0.00	0.00	0.00	1	1892051	454	80	353	21	513
CRW_00345	SSU_rRNA_eukarya links to Rfam database...	0.02	0.02	0.02	8	1586488	384	57	318	9	490
CRW_00346	SSU_rRNA_eukarya links to Rfam database...	0.35	0.31	0.39	156	1584690	293	33	211	49	345
CRW_00348	SSU_rRNA_eukarya links to Rfam database...	0.00	0.00	0.00	0	1615104	410	69	330	11	503
CRW_00358	SSU_rRNA_eukarya links to Rfam database...	0.00	0.00	0.00	0	1674979	406	62	324	20	507
CRW_00366	SSU_rRNA_eukarya links to Rfam database...	0.01	0.01	0.01	4	1579393	371	66	290	15	478
CRW_00370	SSU_rRNA_eukarya links to Rfam database...	0.39	0.37	0.42	186	1640327	297	32	221	44	320
CRW_00371	SSU_rRNA_eukarya links to Rfam database...	0.02	0.02	0.02	8	1611495	424	63	344	17	488
CRW_00372	SSU_rRNA_eukarya links to Rfam database...	0.02	0.02	0.02	8	1625926	390	51	321	18	490
CRW_00386	SSU_rRNA_eukarya links to Rfam database...	0.02	0.02	0.02	8	1750835	427	65	348	14	507
CRW_00403	SSU_rRNA_eukarya links to Rfam database...	0.00	0.00	0.00	0	1606168	385	68	292	25	464
CRW_00411	SSU_rRNA_eukarya links to Rfam database...	0.00	0.00	0.00	0	1615135	382	74	294	14	496
CRW_00414	SSU_rRNA_eukarya links to Rfam database...	0.33	0.31	0.36	152	1665808	305	45	220	40	343
CRW_00466	SSU_rRNA_bacteria links to Rfam database...	0.64	0.56	0.73	258	1116413	115	15	79	21	200
CRW_00548	5S_rRNA links to Rfam database...	0.86	0.79	0.94	30	7349	3	0	2	1	8
CRW_00552	5S_rRNA links to Rfam database...	0.85	0.74	0.97	29	7110	5	0	1	4	10
CRW_00555	5S_rRNA links to Rfam database...	0.78	0.68	0.90	27	7596	4	0	3	1	13
CRW_00567	5S_rRNA links to Rfam database...	0.50	0.40	0.64	16	7478	11	0	9	2	24
CRW_00570	5S_rRNA links to Rfam database...	0.92	0.86	0.97	32	6870	3	0	1	2	5
CRW_00573	5S_rRNA links to Rfam database...	0.73	0.68	0.79	27	7106	7	0	7	0	13
CRW_00589	SSU_rRNA_bacteria links to Rfam database...	0.64	0.55	0.75	244	1094136	105	9	71	25	201
CRW_00590	SSU_rRNA_bacteria links to Rfam database...	0.63	0.55	0.73	249	1119415	115	6	86	23	203
CRW_00591	SSU_rRNA_bacteria links to Rfam database...	0.70	0.63	0.76	283	1098533	118	13	74	31	163
CRW_00598	SSU_rRNA_eukarya links to Rfam database...	0.30	0.27	0.33	134	1665821	312	37	233	42	357
CRW_00758	SSU_rRNA_eukarya links to Rfam database...	0.00	0.00	0.00	0	1640340	444	79	347	18	483
CRW_00759	SSU_rRNA_eukarya links to Rfam database...	0.02	0.02	0.02	9	1636732	429	64	340	25	472
CRW_00760	SSU_rRNA_eukarya links to Rfam database...	0.00	0.00	0.00	0	1638553	425	77	325	23	486
CRW_00772	SSU_rRNA_bacteria links to Rfam database...	0.59	0.49	0.71	196	945723	109	10	71	28	208
CRW_00789	SSU_rRNA_bacteria links to Rfam database...	0.65	0.57	0.75	254	1137446	113	13	73	27	193
CRW_00795	SSU_rRNA_bacteria links to Rfam database...	0.63	0.53	0.75	209	1152644	114	10	58	46	185
CRW_00849	SSU_rRNA_bacteria links to Rfam database...	0.61	0.51	0.72	241	1117925	111	14	80	17	229
CRW_00997	SSU_rRNA_bacteria links to Rfam database...	0.73	0.69	0.77	319	1135862	125	18	79	28	145
CRW_01153	SSU_rRNA_eukarya links to Rfam database...	0.35	0.31	0.40	155	1606145	262	44	184	34	348
CRW_01171	SSU_rRNA_eukarya links to Rfam database...	0.02	0.01	0.02	7	1593610	403	61	327	15	499
CRW_01300	SSU_rRNA_eukarya links to Rfam database...	0.00	0.00	0.00	0	1693285	445	62	373	10	515
CRW_01484	5S_rRNA links to Rfam database...	0.88	0.79	0.97	31	7471	2	0	1	1	8
CRW_01485	5S_rRNA links to Rfam database...	0.85	0.74	0.97	29	7473	1	0	1	0	10
CRW_01487	5S_rRNA links to Rfam database...	0.85	0.73	1.00	30	7473	0	0	0	0	11
CRW_01489	5S_rRNA links to Rfam database...	0.77	0.67	0.90	26	7474	4	0	3	1	13
CRW_01491	5S_rRNA links to Rfam database...	0.71	0.58	0.86	25	8356	4	0	4	0	18
CRW_01492	5S_rRNA links to Rfam database...	0.77	0.64	0.93	27	7597	2	0	2	0	15
CRW_01494	5S_rRNA links to Rfam database...	0.68	0.55	0.85	22	7114	4	0	4	0	18
CRW_01497	5S_rRNA links to Rfam database...	0.74	0.60	0.92	24	7114	3	0	2	1	16
CRW_01498	5S_rRNA links to Rfam database...	0.79	0.67	0.94	29	8097	2	0	2	0	14
CRW_01499	5S_rRNA links to Rfam database...	0.78	0.66	0.93	27	7972	2	0	2	0	14
CRW_01500	5S_rRNA links to Rfam database...	0.80	0.68	0.93	26	7722	3	0	2	1	12
CRW_01501	5S_rRNA links to Rfam database...	0.63	0.53	0.75	24	8483	8	0	8	0	21
CRW_01508	5S_rRNA links to Rfam database...	0.78	0.67	0.90	28	7970	4	0	3	1	14
CRW_01532	5S_rRNA links to Rfam database...	0.81	0.73	0.90	27	7110	7	0	3	4	10
CRW_01533	5S_rRNA links to Rfam database...	0.92	0.86	0.97	32	7107	3	0	1	2	5
CRW_01534	5S_rRNA links to Rfam database...	0.84	0.76	0.93	28	7110	6	0	2	4	9
CRW_01535	5S_rRNA links to Rfam database...	0.80	0.65	1.00	24	7116	2	0	0	2	13
CRW_01536	5S_rRNA links to Rfam database...	0.92	0.89	0.94	33	6986	4	0	2	2	4
CRW_01537	5S_rRNA links to Rfam database...	0.89	0.84	0.94	31	7107	6	0	2	4	6
CRW_01539	5S_rRNA links to Rfam database...	0.90	0.86	0.94	32	7106	6	0	2	4	5
CRW_01540	5S_rRNA links to Rfam database...	0.92	0.86	0.97	32	7107	4	0	1	3	5
CRW_01541	5S_rRNA links to Rfam database...	0.80	0.76	0.85	28	7107	7	0	5	2	9
CRW_01542	5S_rRNA links to Rfam database...	0.92	0.86	0.97	32	7107	4	0	1	3	5
CRW_01544	5S_rRNA links to Rfam database...	0.80	0.73	0.87	27	7109	5	0	4	1	10
CRW_01548	5S_rRNA links to Rfam database...	0.87	0.81	0.94	30	6989	4	0	2	2	7
CRW_01555	5S_rRNA links to Rfam database...	0.84	0.73	0.96	27	9017	1	0	1	0	10
CRW_01556	5S_rRNA links to Rfam database...	0.86	0.78	0.94	29	7109	5	0	2	3	8
CRW_01557	5S_rRNA links to Rfam database...	0.86	0.81	0.91	30	7107	6	0	3	3	7
CRW_01559	5S_rRNA links to Rfam database...	0.90	0.86	0.94	32	7226	5	0	2	3	5
CRW_01562	5S_rRNA links to Rfam database...	0.64	0.54	0.77	20	7114	8	0	6	2	17
CRW_01563	5S_rRNA links to Rfam database...	0.81	0.76	0.88	28	6871	6	0	4	2	9
CRW_01566	5S_rRNA links to Rfam database...	0.74	0.57	0.95	21	7118	4	0	1	3	16
CRW_01568	5S_rRNA links to Rfam database...	0.75	0.70	0.81	26	7108	6	0	6	0	11
CRW_01569	5S_rRNA links to Rfam database...	0.85	0.81	0.88	30	7106	5	0	4	1	7
CRW_01570	5S_rRNA links to Rfam database...	0.87	0.81	0.94	30	7108	5	0	2	3	7
CRW_01572	5S_rRNA links to Rfam database...	0.79	0.68	0.93	25	6994	6	0	2	4	12
CRW_01573	5S_rRNA links to Rfam database...	0.85	0.81	0.88	30	7226	6	0	4	2	7
CRW_01578	5S_rRNA links to Rfam database...	0.92	0.89	0.94	33	7105	5	0	2	3	4
CRW_01580	5S_rRNA links to Rfam database...	0.89	0.84	0.94	31	7107	3	0	2	1	6
CRW_01581	5S_rRNA links to Rfam database...	0.89	0.81	0.97	30	7109	2	0	1	1	7
CRW_01583	5S_rRNA links to Rfam database...	0.87	0.81	0.94	30	7108	6	0	2	4	7
CRW_01584	5S_rRNA links to Rfam database...	0.72	0.59	0.88	22	7115	5	0	3	2	15
CRW_01590	5S_rRNA links to Rfam database...	0.83	0.78	0.88	29	7107	7	0	4	3	8
CRW_01593	5S_rRNA links to Rfam database...	0.90	0.86	0.94	32	7106	5	0	2	3	5
CRW_01595	5S_rRNA links to Rfam database...	0.90	0.86	0.94	32	8481	6	0	2	4	5
CRW_01599	5S_rRNA links to Rfam database...	0.89	0.86	0.91	32	7105	7	0	3	4	5
CRW_01603	5S_rRNA links to Rfam database...	0.73	0.65	0.83	24	7111	8	0	5	3	13
CRW_01605	5S_rRNA links to Rfam database...	0.72	0.65	0.80	24	7110	10	0	6	4	13
CRW_01606	5S_rRNA links to Rfam database...	0.35	0.24	0.50	9	7122	10	0	9	1	28
CRW_01608	5S_rRNA links to Rfam database...	0.89	0.84	0.94	31	8352	4	0	2	2	6
CRW_01616	5S_rRNA links to Rfam database...	0.78	0.68	0.89	25	7112	5	0	3	2	12
CRW_01617	5S_rRNA links to Rfam database...	0.86	0.81	0.91	30	7107	4	0	3	1	7
CRW_01620	5S_rRNA links to Rfam database...	0.92	0.92	0.92	34	6984	7	0	3	4	3
CRW_01621	5S_rRNA links to Rfam database...	0.70	0.62	0.79	23	7111	7	0	6	1	14
CRW_01623	5S_rRNA links to Rfam database...	0.90	0.86	0.94	32	7106	4	0	2	2	5
CRW_01625	5S_rRNA links to Rfam database...	0.59	0.51	0.68	19	7112	11	0	9	2	18
PDB_00012	mir-TAR links to Rfam database...	1.00	1.00	1.00	7	399	2	0	0	2	0
PDB_00070	tRNA links to Rfam database...	0.09	0.04	0.20	1	2845	4	0	4	0	23
PDB_00213	Gammaretro_CES links to Rfam database...	0.56	0.49	0.65	20	5019	11	0	11	0	21
PDB_00229	tRNA links to Rfam database...	0.34	0.22	0.56	5	2766	4	0	4	0	18
PDB_00327	tRNA links to Rfam database...	0.96	0.91	1.00	21	3060	0	0	0	0	2
PDB_00362	tRNA links to Rfam database...	0.62	0.50	0.79	11	2836	3	0	3	0	11
PDB_00402	tRNA links to Rfam database...	0.96	0.91	1.00	21	2754	0	0	0	0	2
PDB_00431	tRNA links to Rfam database...	0.97	0.95	1.00	19	2192	0	0	0	0	1
PDB_00474	tRNA links to Rfam database...	0.72	0.52	1.00	12	2689	0	0	0	0	11
PDB_00553	mir-TAR links to Rfam database...	0.90	0.82	1.00	9	456	0	0	0	0	2
PDB_00571	tRNA links to Rfam database...	0.66	0.56	0.78	14	3303	5	0	4	1	11
PDB_00667	tRNA links to Rfam database...	0.91	0.86	0.95	19	2830	2	0	1	1	3
PDB_00703	SSU_rRNA_bacteria links to Rfam database...	0.67	0.60	0.75	297	1073447	132	13	88	31	198
PDB_00741	Entero_5_CRE links to Rfam database...	0.84	0.71	1.00	12	691	0	0	0	0	5
PDB_00810	s2m links to Rfam database...	0.64	0.47	0.89	8	1072	1	0	1	0	9
PDB_00828	Purine links to Rfam database...	0.82	0.74	0.91	20	2463	2	2	0	0	7
PDB_00829	Purine links to Rfam database...	0.70	0.63	0.79	15	2259	4	2	2	0	9
PDB_00854	SSU_rRNA_bacteria links to Rfam database...	0.62	0.50	0.76	266	1500430	124	10	72	42	269
PDB_00876	HIV_FE links to Rfam database...	0.55	0.50	0.63	10	974	6	0	6	0	10
PDB_01002	tRNA links to Rfam database...	0.90	0.86	0.95	18	2756	3	0	1	2	3
PDB_01020	Purine links to Rfam database...	0.84	0.78	0.90	18	2258	3	2	0	1	5
PDB_01050	UnaL2 links to Rfam database...	0.68	0.54	0.88	7	622	3	0	1	2	6
PDB_01053	tRNA links to Rfam database...	1.00	1.00	1.00	16	1362	0	0	0	0	0
PDB_01073	SAM links to Rfam database...	0.34	0.18	0.67	6	4362	3	0	3	0	28
PDB_01088	SSU_rRNA_bacteria links to Rfam database...	0.62	0.49	0.77	268	1471123	123	8	71	44	279
PDB_01103	SSU_rRNA_bacteria links to Rfam database...	0.63	0.49	0.80	278	1606180	104	12	58	34	284
PDB_01105	SSU_rRNA_bacteria links to Rfam database...	0.61	0.50	0.75	270	1433609	124	8	84	32	270
PDB_01114	TPP links to Rfam database...	0.77	0.59	1.00	16	2834	0	0	0	0	11
PDB_01120	SSU_rRNA_bacteria links to Rfam database...	0.64	0.54	0.76	282	1204758	129	8	80	41	245
PDB_01152	HIV_FS2 links to Rfam database...	0.88	0.79	1.00	11	550	0	0	0	0	3
PDB_01236	ykoK links to Rfam database...	0.76	0.61	0.94	33	11593	5	1	1	3	21
PDB_01273	SSU_rRNA_bacteria links to Rfam database...	0.69	0.62	0.77	305	1117865	121	14	76	31	186
RFA_00389	Hammerhead_3 links to Rfam database...	0.90	0.87	0.93	13	1417	4	0	1	3	2
RFA_00390	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	3	0	0	3	0
RFA_00391	Hammerhead_3 links to Rfam database...	0.83	0.80	0.86	12	1417	5	0	2	3	3
RFA_00396	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	3	0	0	3	1
RFA_00402	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	1	0	0	1	0
RFA_00409	Hammerhead_3 links to Rfam database...	0.83	0.80	0.86	12	1417	5	0	2	3	3
RFA_00416	Hammerhead_3 links to Rfam database...	0.87	0.87	0.87	13	1470	5	0	2	3	2
RFA_00433	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	3	0	0	3	0
RFA_00434	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	3	0	0	3	0
RFA_00436	Hammerhead_3 links to Rfam database...	0.87	0.87	0.87	13	1416	5	0	2	3	2
RFA_00440	Hammerhead_3 links to Rfam database...	0.82	0.67	1.00	10	1475	3	0	0	3	5
RFA_00442	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	3	0	0	3	0
RFA_00444	Hammerhead_3 links to Rfam database...	0.78	0.67	0.91	10	1529	2	0	1	1	5
RFA_00583	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4935	6	0	0	6	0
RFA_00584	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	2911	5	0	0	5	0
RFA_00585	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4836	3	0	0	3	0
RFA_00586	Y_RNA links to Rfam database...	0.97	0.93	1.00	14	3902	3	0	0	3	1
RFA_00587	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4836	7	0	0	7	0
RFA_00588	Y_RNA links to Rfam database...	0.97	0.93	1.00	14	4546	8	0	0	8	1
RFA_00589	Y_RNA links to Rfam database...	0.97	0.93	1.00	14	4357	2	0	0	2	1
RFA_00594	Y_RNA links to Rfam database...	0.97	0.93	1.00	14	2761	9	0	0	9	1
RFA_00596	Y_RNA links to Rfam database...	0.39	0.33	0.45	5	5984	13	0	6	7	10
RFA_00599	Telomerase-vert links to Rfam database...	0.44	0.32	0.61	36	101416	35	2	21	12	75
RFA_00601	Telomerase-vert links to Rfam database...	0.53	0.35	0.80	40	99185	20	0	10	10	74
RFA_00602	Telomerase-vert links to Rfam database...	0.44	0.29	0.65	34	101423	27	1	17	9	82
RFA_00658	Hammerhead_1 links to Rfam database...	0.69	0.64	0.75	9	1116	4	0	3	1	5
RFA_00664	Hammerhead_1 links to Rfam database...	0.64	0.57	0.73	8	979	4	0	3	1	6
RFA_00667	Hammerhead_1 links to Rfam database...	0.64	0.57	0.73	8	979	4	0	3	1	6
RFA_00668	Hammerhead_1 links to Rfam database...	0.47	0.36	0.63	5	982	4	0	3	1	9
RFA_00672	Hammerhead_1 links to Rfam database...	0.61	0.54	0.70	7	893	3	0	3	0	6
RFA_00673	Hammerhead_1 links to Rfam database...	0.59	0.50	0.70	7	1118	4	0	3	1	7
RFA_00674	Hammerhead_1 links to Rfam database...	0.69	0.64	0.75	9	1116	4	0	3	1	5
RFA_00675	Hammerhead_1 links to Rfam database...	0.62	0.50	0.78	7	981	3	0	2	1	7
RFA_00677	Hammerhead_1 links to Rfam database...	0.69	0.64	0.75	9	978	4	0	3	1	5
RFA_00678	Hammerhead_1 links to Rfam database...	0.72	0.64	0.82	9	935	3	0	2	1	5
RFA_00680	Hammerhead_1 links to Rfam database...	0.74	0.71	0.77	10	1115	4	0	3	1	4
RFA_00704	Hammerhead_1 links to Rfam database...	0.42	0.36	0.50	5	980	6	0	5	1	9
RFA_00707	Hammerhead_1 links to Rfam database...	0.72	0.64	0.82	9	1024	3	0	2	1	5
RFA_00715	Hammerhead_1 links to Rfam database...	0.60	0.43	0.86	6	939	2	0	1	1	8
RFA_00717	Hammerhead_1 links to Rfam database...	0.48	0.43	0.55	6	892	5	0	5	0	8
RFA_00730	s2m links to Rfam database...	0.91	0.83	1.00	10	893	1	0	0	1	2
RFA_00731	s2m links to Rfam database...	0.91	0.83	1.00	10	893	0	0	0	0	2
RFA_00733	s2m links to Rfam database...	0.91	0.83	1.00	10	893	0	0	0	0	2
RFA_00734	s2m links to Rfam database...	0.91	0.83	1.00	10	893	0	0	0	0	2
RFA_00736	s2m links to Rfam database...	0.91	0.83	1.00	10	893	0	0	0	0	2
RFA_00737	s2m links to Rfam database...	0.91	0.83	1.00	10	893	0	0	0	0	2
RFA_00745	s2m links to Rfam database...	0.91	0.83	1.00	10	936	1	0	0	1	2
RFA_00749	s2m links to Rfam database...	0.91	0.83	1.00	10	893	0	0	0	0	2
RFA_00758	s2m links to Rfam database...	0.86	0.75	1.00	9	894	0	0	0	0	3
RFA_00762	s2m links to Rfam database...	0.91	0.83	1.00	10	893	0	0	0	0	2
RFA_00763	s2m links to Rfam database...	0.91	0.83	1.00	10	893	1	0	0	1	2
RFA_00764	s2m links to Rfam database...	0.91	0.83	1.00	10	893	0	0	0	0	2
RFA_00765	s2m links to Rfam database...	0.91	0.83	1.00	10	893	0	0	0	0	2
RFA_00786	Gammaretro_CES links to Rfam database...	0.81	0.78	0.83	25	5020	5	1	4	0	7
RFA_00791	Gammaretro_CES links to Rfam database...	0.77	0.72	0.82	23	5123	6	1	4	1	9
RFA_00792	Gammaretro_CES links to Rfam database...	0.64	0.63	0.67	20	5020	11	2	8	1	12
RFA_00801	Gammaretro_CES links to Rfam database...	0.59	0.56	0.62	18	5021	12	2	9	1	14
SPR_00007	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00009	tRNA links to Rfam database...	0.77	0.75	0.79	15	2831	4	0	4	0	5
SPR_00010	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00012	tRNA links to Rfam database...	0.95	0.95	0.95	19	2830	1	0	1	0	1
SPR_00013	tRNA links to Rfam database...	0.84	0.80	0.89	16	2832	2	0	2	0	4
SPR_00016	tRNA links to Rfam database...	0.95	0.95	0.95	20	2829	1	0	1	0	1
SPR_00017	tRNA links to Rfam database...	0.90	0.90	0.90	19	2829	2	0	2	0	2
SPR_00025	tRNA links to Rfam database...	0.90	0.90	0.90	18	2906	3	0	2	1	2
SPR_00026	tRNA links to Rfam database...	0.95	0.95	0.95	20	2905	1	0	1	0	1
SPR_00027	tRNA links to Rfam database...	0.90	0.90	0.90	19	2905	2	0	2	0	2
SPR_00036	tRNA links to Rfam database...	0.95	0.90	1.00	18	2757	0	0	0	0	2
SPR_00045	tRNA links to Rfam database...	0.93	0.91	0.95	20	2829	1	0	1	0	2
SPR_00064	tRNA links to Rfam database...	0.63	0.48	0.83	10	2838	2	0	2	0	11
SPR_00065	tRNA links to Rfam database...	0.90	0.90	0.90	19	2829	2	0	2	0	2
SPR_00066	tRNA links to Rfam database...	0.63	0.48	0.83	10	2838	2	0	2	0	11
SPR_00068	tRNA links to Rfam database...	0.69	0.52	0.92	11	2838	1	0	1	0	10
SPR_00070	tRNA links to Rfam database...	0.88	0.86	0.90	18	2830	2	0	2	0	3
SPR_00074	tRNA links to Rfam database...	0.92	0.90	0.95	18	2831	1	0	1	0	2
SPR_00079	tRNA links to Rfam database...	0.95	0.95	0.95	18	2466	1	0	1	0	1
SPR_00086	tRNA links to Rfam database...	0.95	0.95	0.95	20	2829	1	0	1	0	1
SPR_00087	tRNA links to Rfam database...	0.95	0.95	0.95	19	2830	1	0	1	0	1
SPR_00088	tRNA links to Rfam database...	0.67	0.50	0.91	10	2839	1	0	1	0	10
SPR_00089	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	0	0	0	0	0
SPR_00090	tRNA links to Rfam database...	0.87	0.80	0.94	16	2833	1	0	1	0	4
SPR_00091	tRNA links to Rfam database...	0.67	0.50	0.91	10	2839	1	0	1	0	10
SPR_00095	tRNA links to Rfam database...	0.95	0.95	0.95	20	2829	1	0	1	0	1
SPR_00111	tRNA links to Rfam database...	0.72	0.52	1.00	11	2690	0	0	0	0	10
SPR_00112	tRNA links to Rfam database...	0.75	0.57	1.00	12	2689	0	0	0	0	9
SPR_00115	tRNA links to Rfam database...	1.00	1.00	1.00	21	2680	0	0	0	0	0
SPR_00117	tRNA links to Rfam database...	0.93	0.90	0.95	19	2830	2	0	1	1	2
SPR_00139	tRNA links to Rfam database...	0.31	0.24	0.42	5	2914	8	0	7	1	16
SPR_00153	tRNA links to Rfam database...	0.93	0.90	0.95	19	2906	1	0	1	0	2
SPR_00155	tRNA links to Rfam database...	0.90	0.90	0.90	19	2905	2	0	2	0	2
SPR_00156	tRNA links to Rfam database...	0.95	0.95	0.95	20	2905	1	0	1	0	1
SPR_00176	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	0	0	0	0	0
SPR_00177	tRNA links to Rfam database...	0.95	0.95	0.95	20	2829	1	0	1	0	1
SPR_00178	tRNA links to Rfam database...	0.93	0.90	0.95	19	2830	1	0	1	0	2
SPR_00191	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00200	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00224	tRNA links to Rfam database...	0.90	0.90	0.90	18	3721	3	0	2	1	2
SPR_00271	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00273	tRNA links to Rfam database...	0.90	0.90	0.90	19	2829	2	0	2	0	2
SPR_00276	tRNA links to Rfam database...	0.95	0.95	0.95	20	2905	1	0	1	0	1
SPR_00277	tRNA links to Rfam database...	0.95	0.95	0.95	20	2905	1	0	1	0	1
SPR_00294	tRNA links to Rfam database...	0.29	0.19	0.44	4	2841	5	0	5	0	17
SPR_00295	tRNA links to Rfam database...	0.55	0.38	0.80	8	2765	2	0	2	0	13
SPR_00314	tRNA links to Rfam database...	0.98	0.95	1.00	20	2906	0	0	0	0	1
SPR_00315	tRNA links to Rfam database...	0.98	0.95	1.00	20	2906	0	0	0	0	1
SPR_00317	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00318	tRNA links to Rfam database...	0.93	0.90	0.95	19	2906	1	0	1	0	2
SPR_00321	tRNA links to Rfam database...	0.66	0.48	0.91	10	2992	1	0	1	0	11
SPR_00333	tRNA links to Rfam database...	0.90	0.86	0.95	18	2756	1	0	1	0	3
SPR_00352	tRNA links to Rfam database...	0.85	0.81	0.89	17	2907	2	0	2	0	4
SPR_00353	tRNA links to Rfam database...	0.95	0.95	0.95	20	2829	1	0	1	0	1
SPR_00357	tRNA links to Rfam database...	0.93	0.90	0.95	19	2906	1	0	1	0	2
SPR_00358	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00370	tRNA links to Rfam database...	0.69	0.52	0.92	11	2763	1	0	1	0	10
SPR_00386	tRNA links to Rfam database...	0.95	0.95	0.95	19	4166	3	0	1	2	1
SPR_00414	tRNA links to Rfam database...	1.00	1.00	1.00	21	3549	4	0	0	4	0
SPR_00415	tRNA links to Rfam database...	0.95	0.95	0.95	20	3549	5	0	1	4	1
SPR_00417	tRNA links to Rfam database...	0.83	0.73	0.94	16	3553	5	0	1	4	6
SPR_00418	tRNA links to Rfam database...	0.80	0.68	0.94	15	3554	5	0	1	4	7
SPR_00434	tRNA links to Rfam database...	0.95	0.95	0.95	20	2829	1	0	1	0	1
SPR_00435	tRNA links to Rfam database...	0.69	0.52	0.92	11	2838	1	0	1	0	10
SPR_00436	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00437	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	0	0	0	0	0
SPR_00438	tRNA links to Rfam database...	0.95	0.95	0.95	20	2754	1	0	1	0	1
SPR_00452	tRNA links to Rfam database...	0.69	0.52	0.92	11	2838	1	0	1	0	10
SPR_00455	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00456	tRNA links to Rfam database...	0.88	0.86	0.90	18	2830	2	0	2	0	3
SPR_00476	tRNA links to Rfam database...	0.95	0.95	0.95	20	2754	1	0	1	0	1
SPR_00479	tRNA links to Rfam database...	0.93	0.90	0.95	19	2830	1	0	1	0	2
SPR_00482	tRNA links to Rfam database...	1.00	1.00	1.00	21	2680	0	0	0	0	0
SPR_00483	tRNA links to Rfam database...	0.72	0.67	0.78	14	2832	4	0	4	0	7
SPR_00487	tRNA links to Rfam database...	0.78	0.73	0.84	16	2682	3	0	3	0	6
SPR_00493	tRNA links to Rfam database...	0.60	0.41	0.90	9	2765	1	0	1	0	13
SPR_00496	tRNA links to Rfam database...	0.00	0.00	0.00	0	2771	4	0	4	0	21
SPR_00497	tRNA links to Rfam database...	0.95	0.95	0.95	20	2754	1	0	1	0	1
SPR_00502	tRNA links to Rfam database...	0.90	0.86	0.95	18	2907	1	0	1	0	3
SPR_00504	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	0	0	0	0	0
SPR_00505	tRNA links to Rfam database...	0.74	0.55	1.00	11	2915	0	0	0	0	9
SPR_00506	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00509	tRNA links to Rfam database...	0.64	0.50	0.83	10	2914	2	0	2	0	10
SPR_00512	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00513	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00518	tRNA links to Rfam database...	0.74	0.55	1.00	11	2915	0	0	0	0	9
SPR_00548	tRNA links to Rfam database...	0.90	0.86	0.95	18	3384	4	0	1	3	3
SPR_00557	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00561	tRNA links to Rfam database...	0.72	0.52	1.00	11	2839	0	0	0	0	10
SPR_00590	tRNA links to Rfam database...	0.92	0.90	0.95	18	2984	2	0	1	1	2
SPR_00593	tRNA links to Rfam database...	0.95	0.95	0.95	18	2756	2	0	1	1	1
SPR_00595	tRNA links to Rfam database...	0.95	0.95	0.95	20	2754	1	0	1	0	1
SPR_00598	tRNA links to Rfam database...	0.66	0.52	0.85	11	2990	2	0	2	0	10
SPR_00610	tRNA links to Rfam database...	1.00	1.00	1.00	21	2535	0	0	0	0	0
SPR_00620	tRNA links to Rfam database...	0.93	0.90	0.95	19	2983	1	0	1	0	2
SPR_00721	tRNA links to Rfam database...	0.95	0.95	0.95	20	2905	1	0	1	0	1
SPR_00722	tRNA links to Rfam database...	0.95	0.95	0.95	19	2906	1	0	1	0	1
SPR_00758	tRNA links to Rfam database...	0.95	0.95	0.95	20	2982	1	0	1	0	1
SPR_00760	tRNA links to Rfam database...	0.64	0.52	0.79	11	3556	3	0	3	0	10
SPR_00777	tRNA links to Rfam database...	1.00	1.00	1.00	20	2608	1	0	0	1	0
SPR_00867	tRNA links to Rfam database...	0.88	0.86	0.90	18	2906	2	0	2	0	3
SPR_00868	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00943	tRNA links to Rfam database...	1.00	1.00	1.00	20	2536	0	0	0	0	0
SPR_00957	tRNA links to Rfam database...	0.95	0.95	0.95	20	2982	2	0	1	1	1
SPR_01040	tRNA links to Rfam database...	0.69	0.52	0.92	11	2763	1	0	1	0	10
SPR_01088	tRNA links to Rfam database...	0.82	0.71	0.94	15	2910	1	0	1	0	6
SPR_01095	tRNA links to Rfam database...	0.72	0.52	1.00	11	2839	0	0	0	0	10
SPR_01106	tRNA links to Rfam database...	1.00	1.00	1.00	21	2535	0	0	0	0	0
SPR_01117	tRNA links to Rfam database...	0.49	0.29	0.86	6	2996	1	0	1	0	15
SPR_01157	tRNA links to Rfam database...	0.79	0.71	0.88	15	2758	3	0	2	1	6
SRP_00006	Metazoa_SRP links to Rfam database...	0.95	0.90	1.00	91	45662	1	0	0	1	10
SRP_00008	Bacteria_small_SRP links to Rfam database...	0.50	0.40	0.63	10	2910	7	0	6	1	15
SRP_00011	Plant_SRP links to Rfam database...	0.68	0.61	0.77	63	46278	20	0	19	1	41
SRP_00015	Plant_SRP links to Rfam database...	0.83	0.75	0.93	74	46280	8	0	6	2	25
SRP_00020	Bacteria_small_SRP links to Rfam database...	0.90	0.85	0.97	28	5536	1	0	1	0	5
SRP_00024	Bacteria_large_SRP links to Rfam database...	0.70	0.62	0.78	54	37606	15	5	10	0	33
SRP_00026	Bacteria_large_SRP links to Rfam database...	0.76	0.72	0.82	63	36779	15	0	14	1	25
SRP_00027	Bacteria_large_SRP links to Rfam database...	0.69	0.64	0.75	56	37053	20	2	17	1	31
SRP_00030	Bacteria_large_SRP links to Rfam database...	0.70	0.65	0.75	57	36780	19	4	15	0	31
SRP_00031	Bacteria_large_SRP links to Rfam database...	0.67	0.63	0.72	56	36237	23	4	18	1	33
SRP_00037	Bacteria_large_SRP links to Rfam database...	0.71	0.64	0.78	56	36513	16	2	14	0	31
SRP_00038	Bacteria_small_SRP links to Rfam database...	0.86	0.82	0.90	27	5020	3	0	3	0	6
SRP_00042	Bacteria_small_SRP links to Rfam database...	0.73	0.60	0.88	15	3988	3	0	2	1	10
SRP_00044	Bacteria_small_SRP links to Rfam database...	0.89	0.84	0.93	27	6076	4	0	2	2	5
SRP_00046	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	4749	4	1	3	0	32
SRP_00050	Metazoa_SRP links to Rfam database...	0.77	0.73	0.82	72	44762	16	1	15	0	27
SRP_00051	Bacteria_small_SRP links to Rfam database...	0.82	0.67	1.00	20	5440	0	0	0	0	10
SRP_00054	Bacteria_small_SRP links to Rfam database...	0.82	0.75	0.89	24	5538	3	0	3	0	8
SRP_00057	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6327	1	1	0	0	35
SRP_00058	Bacteria_small_SRP links to Rfam database...	0.91	0.85	0.97	29	5748	1	0	1	0	5
SRP_00066	Metazoa_SRP links to Rfam database...	0.69	0.64	0.75	64	45366	22	4	17	1	36
SRP_00072	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6325	3	0	3	0	29
SRP_00074	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6553	2	2	0	0	29
SRP_00075	Bacteria_small_SRP links to Rfam database...	0.44	0.35	0.55	12	5543	10	1	9	0	22
SRP_00077	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6663	7	1	6	0	37
SRP_00081	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	5562	3	2	1	0	31
SRP_00084	Bacteria_small_SRP links to Rfam database...	0.84	0.74	0.96	25	5434	1	0	1	0	9
SRP_00086	Metazoa_SRP links to Rfam database...	0.89	0.85	0.92	85	44161	8	1	6	1	15
SRP_00088	Bacteria_large_SRP links to Rfam database...	0.70	0.64	0.76	57	34116	18	3	15	0	32
SRP_00089	Bacteria_large_SRP links to Rfam database...	0.61	0.52	0.72	47	35713	19	3	15	1	43
SRP_00090	Bacteria_large_SRP links to Rfam database...	0.65	0.57	0.75	51	35443	17	2	15	0	39
SRP_00094	Bacteria_small_SRP links to Rfam database...	0.56	0.46	0.69	11	4079	6	1	4	1	13
SRP_00095	Bacteria_small_SRP links to Rfam database...	0.89	0.84	0.95	21	3983	2	0	1	1	4
SRP_00098	Bacteria_small_SRP links to Rfam database...	0.51	0.43	0.62	16	6415	11	0	10	1	21
SRP_00102	Metazoa_SRP links to Rfam database...	0.82	0.76	0.88	77	44463	12	1	10	1	24
SRP_00103	Metazoa_SRP links to Rfam database...	0.88	0.84	0.92	86	45358	7	1	6	0	16
SRP_00105	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	5561	4	0	4	0	34
SRP_00107	Bacteria_small_SRP links to Rfam database...	0.55	0.53	0.59	10	3638	8	2	5	1	9
SRP_00121	Bacteria_small_SRP links to Rfam database...	0.73	0.60	0.88	15	4261	2	0	2	0	10
SRP_00128	Bacteria_small_SRP links to Rfam database...	0.87	0.75	1.00	27	6759	0	0	0	0	9
SRP_00132	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	4848	3	0	3	0	29
SRP_00134	Bacteria_large_SRP links to Rfam database...	0.71	0.69	0.74	20	5968	8	0	7	1	9
SRP_00141	Bacteria_small_SRP links to Rfam database...	0.72	0.56	0.92	23	6303	2	0	2	0	18
SRP_00152	Plant_SRP links to Rfam database...	0.88	0.82	0.94	84	45664	9	0	5	4	19
SRP_00161	Bacteria_small_SRP links to Rfam database...	0.91	0.86	0.95	19	2830	1	0	1	0	3
SRP_00162	Bacteria_small_SRP links to Rfam database...	0.44	0.30	0.64	7	2915	4	1	3	0	16
SRP_00163	Bacteria_small_SRP links to Rfam database...	0.74	0.65	0.85	17	3466	3	1	2	0	9
SRP_00164	Bacteria_small_SRP links to Rfam database...	0.83	0.69	1.00	24	6879	0	0	0	0	11
SRP_00170	Bacteria_small_SRP links to Rfam database...	0.85	0.76	0.95	19	4075	2	0	1	1	6
SRP_00171	Metazoa_SRP links to Rfam database...	0.56	0.55	0.58	48	45368	36	3	32	1	40
SRP_00173	Bacteria_large_SRP links to Rfam database...	0.61	0.51	0.73	46	38163	19	2	15	2	44
SRP_00174	Bacteria_large_SRP links to Rfam database...	0.74	0.65	0.85	56	38715	11	1	9	1	30
SRP_00178	Plant_SRP links to Rfam database...	0.81	0.75	0.87	76	45666	12	0	11	1	26
SRP_00179	Plant_SRP links to Rfam database...	0.79	0.71	0.88	75	45971	11	0	10	1	30
SRP_00181	Plant_SRP links to Rfam database...	0.84	0.78	0.90	80	45967	11	0	9	2	22
SRP_00182	Plant_SRP links to Rfam database...	0.79	0.70	0.89	71	45976	10	0	9	1	30
SRP_00184	Plant_SRP links to Rfam database...	0.79	0.75	0.84	75	45967	17	1	13	3	25
SRP_00188	Plant_SRP links to Rfam database...	0.77	0.67	0.88	53	31065	8	0	7	1	26
SRP_00194	Bacteria_small_SRP links to Rfam database...	0.58	0.48	0.71	10	3226	4	0	4	0	11
SRP_00200	Bacteria_small_SRP links to Rfam database...	0.82	0.69	0.96	25	6877	2	0	1	1	11
SRP_00209	Bacteria_small_SRP links to Rfam database...	0.85	0.85	0.85	23	4629	5	0	4	1	4
SRP_00213	Bacteria_small_SRP links to Rfam database...	0.87	0.80	0.95	20	4165	2	0	1	1	5
SRP_00215	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	3237	3	0	3	0	25
SRP_00227	Bacteria_small_SRP links to Rfam database...	0.95	0.90	1.00	28	5123	0	0	0	0	3
SRP_00228	Metazoa_SRP links to Rfam database...	0.76	0.66	0.88	63	45379	15	1	8	6	32
SRP_00231	Bacteria_small_SRP links to Rfam database...	0.95	0.91	1.00	31	5429	0	0	0	0	3
SRP_00233	Bacteria_small_SRP links to Rfam database...	0.74	0.61	0.91	20	5129	2	0	2	0	13
SRP_00234	Bacteria_large_SRP links to Rfam database...	0.69	0.64	0.75	55	36242	19	2	16	1	31
SRP_00243	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	5147	4	3	1	0	31
SRP_00244	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6899	4	2	2	0	39
SRP_00250	Bacteria_small_SRP links to Rfam database...	0.83	0.72	0.96	26	6759	1	0	1	0	10
SRP_00251	Bacteria_small_SRP links to Rfam database...	0.82	0.69	0.96	25	6995	1	0	1	0	11
SRP_00266	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	4651	5	2	3	0	29
SRP_00268	Bacteria_small_SRP links to Rfam database...	0.84	0.74	0.95	20	4165	2	0	1	1	7
SRP_00269	Bacteria_small_SRP links to Rfam database...	0.78	0.67	0.92	22	5026	2	0	2	0	11
SRP_00270	Bacteria_small_SRP links to Rfam database...	0.82	0.68	1.00	21	4635	0	0	0	0	10
SRP_00271	Bacteria_small_SRP links to Rfam database...	0.93	0.88	1.00	21	3219	0	0	0	0	3
SRP_00273	Bacteria_small_SRP links to Rfam database...	0.79	0.65	0.96	26	6759	1	0	1	0	14
SRP_00274	Bacteria_small_SRP links to Rfam database...	0.84	0.71	1.00	27	6876	0	0	0	0	11
SRP_00295	Bacteria_small_SRP links to Rfam database...	0.83	0.68	1.00	26	6877	0	0	0	0	12
SRP_00303	Bacteria_small_SRP links to Rfam database...	0.68	0.59	0.79	19	6646	6	0	5	1	13
SRP_00308	Bacteria_large_SRP links to Rfam database...	0.62	0.52	0.73	46	36252	17	1	16	0	42
SRP_00310	Bacteria_small_SRP links to Rfam database...	0.82	0.78	0.86	18	2905	3	0	3	0	5
SRP_00312	Bacteria_small_SRP links to Rfam database...	0.79	0.67	0.95	18	4167	2	0	1	1	9
SRP_00315	Bacteria_small_SRP links to Rfam database...	0.84	0.83	0.86	19	2904	3	0	3	0	4
SRP_00317	Metazoa_SRP links to Rfam database...	0.80	0.73	0.87	72	45067	15	0	11	4	26
SRP_00318	Bacteria_small_SRP links to Rfam database...	0.87	0.87	0.87	20	2980	3	0	3	0	3
SRP_00325	Bacteria_small_SRP links to Rfam database...	0.94	0.88	1.00	29	4342	0	0	0	0	4
SRP_00326	Bacteria_small_SRP links to Rfam database...	0.73	0.65	0.83	20	5026	4	0	4	0	11
SRP_00333	Bacteria_small_SRP links to Rfam database...	0.92	0.85	1.00	29	5122	0	0	0	0	5
SRP_00335	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	35232	13	3	10	0	39
SRP_00337	Bacteria_large_SRP links to Rfam database...	0.65	0.62	0.68	56	35429	28	4	22	2	35
SRP_00338	Bacteria_small_SRP links to Rfam database...	0.56	0.36	0.87	13	5445	2	0	2	0	23
SRP_00341	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	4751	2	1	1	0	31
SRP_00342	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	4001	4	0	4	0	25
SRP_00347	Metazoa_SRP links to Rfam database...	0.77	0.71	0.83	68	46583	18	1	13	4	28
SRP_00350	Bacteria_small_SRP links to Rfam database...	0.84	0.74	0.95	20	3895	2	0	1	1	7
SRP_00356	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	5048	2	0	2	0	30
SRP_00357	Bacteria_small_SRP links to Rfam database...	0.87	0.75	1.00	27	5329	0	0	0	0	9
SRP_00358	Bacteria_small_SRP links to Rfam database...	0.74	0.57	0.95	20	6307	1	0	1	0	15
SRP_00367	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6780	6	3	3	0	35
SRP_00368	Metazoa_SRP links to Rfam database...	0.87	0.82	0.92	80	43869	8	1	6	1	18
SRP_00369	Bacteria_small_SRP links to Rfam database...	0.48	0.37	0.62	13	5757	9	1	7	1	22
SRP_00383	Bacteria_small_SRP links to Rfam database...	0.82	0.67	1.00	16	3224	0	0	0	0	8
TMR_00017	tmRNA links to Rfam database...	0.39	0.35	0.42	36	67076	53	12	37	4	66
TMR_00018	tmRNA links to Rfam database...	0.57	0.54	0.60	50	64537	36	14	19	3	42
TMR_00038	tmRNA links to Rfam database...	0.47	0.30	0.73	33	71208	14	4	8	2	77
TMR_00042	tmRNA links to Rfam database...	0.58	0.46	0.74	45	62774	17	5	11	1	53
TMR_00046	tmRNA links to Rfam database...	0.54	0.50	0.59	48	62753	36	12	22	2	48
TMR_00048	tmRNA links to Rfam database...	0.49	0.44	0.54	42	64902	40	10	26	4	53
TMR_00080	tmRNA links to Rfam database...	0.39	0.34	0.44	33	70425	44	11	31	2	63
TMR_00082	tmRNA links to Rfam database...	0.59	0.55	0.64	53	67813	33	13	17	3	43
TMR_00123	tmRNA links to Rfam database...	0.67	0.61	0.73	62	66345	28	8	15	5	39
TMR_00137	tmRNA links to Rfam database...	0.48	0.38	0.60	34	61018	24	7	16	1	55
TMR_00142	tmRNA links to Rfam database...	0.45	0.39	0.51	40	70798	38	9	29	0	62
TMR_00207	tmRNA links to Rfam database...	0.51	0.47	0.56	48	72304	45	12	26	7	55
TMR_00257	tmRNA links to Rfam database...	0.61	0.53	0.69	52	67086	26	3	20	3	46
TMR_00271	tmRNA links to Rfam database...	0.30	0.22	0.40	20	64211	34	5	25	4	71
TMR_00332	tmRNA links to Rfam database...	0.66	0.61	0.71	60	67077	31	8	16	7	39
TMR_00366	tmRNA links to Rfam database...	0.41	0.41	0.41	41	67795	61	13	47	1	59
TMR_00378	tmRNA links to Rfam database...	0.40	0.40	0.40	39	67798	60	13	46	1	58
TMR_00399	tmRNA links to Rfam database...	0.27	0.16	0.47	15	64948	18	5	12	1	79
TMR_00404	tmRNA links to Rfam database...	0.44	0.37	0.52	34	67463	31	6	25	0	58
TMR_00427	tmRNA links to Rfam database...	0.60	0.53	0.69	51	67454	27	6	17	4	46
TMR_00443	tmRNA links to Rfam database...	0.68	0.64	0.73	67	67069	28	11	14	3	37
TMR_00451	tmRNA links to Rfam database...	0.37	0.34	0.42	30	63474	47	14	28	5	59
TMR_00458	tmRNA links to Rfam database...	0.55	0.47	0.64	44	63477	26	6	19	1	49
TMR_00469	tmRNA links to Rfam database...	0.52	0.40	0.69	40	64562	22	7	11	4	60
TMR_00472	tmRNA links to Rfam database...	0.64	0.58	0.71	56	64541	26	11	12	3	41
TMR_00519	tmRNA links to Rfam database...	0.22	0.15	0.34	14	63149	29	5	22	2	81
TMR_00520	tmRNA links to Rfam database...	0.54	0.51	0.57	50	63102	40	11	27	2	49
TMR_00522	tmRNA links to Rfam database...	0.43	0.39	0.48	38	63111	43	11	30	2	59
TMR_00528	tmRNA links to Rfam database...	0.42	0.38	0.46	37	63110	44	14	29	1	60
TMR_00540	tmRNA links to Rfam database...	0.53	0.45	0.62	47	73460	32	10	19	3	57
TMR_00568	tmRNA links to Rfam database...	0.32	0.28	0.35	28	60647	51	10	41	0	71
TMR_00571	tmRNA links to Rfam database...	0.43	0.40	0.47	40	60640	46	10	36	0	59
TMR_00580	tmRNA links to Rfam database...	0.62	0.59	0.66	59	60636	37	8	23	6	41
TMR_00584	tmRNA links to Rfam database...	0.43	0.38	0.48	37	60998	40	11	29	0	60
TMR_00586	tmRNA links to Rfam database...	0.37	0.36	0.37	35	60981	59	20	39	0	62
TMR_00616	tmRNA links to Rfam database...	0.56	0.45	0.68	45	67095	24	4	17	3	54
TMR_00699	tmRNA links to Rfam database...	0.68	0.63	0.74	64	67074	25	8	15	2	38
TMR_00702	tmRNA links to Rfam database...	0.64	0.59	0.70	59	67077	28	7	18	3	41
TMR_00703	tmRNA links to Rfam database...	0.69	0.64	0.76	63	67445	23	4	16	3	36

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Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.

Table of contents:

Overview

Performance plots

Performance of CentroidFold - scored higher in this pairwise comparison

1. Total counts & total scores for CentroidFold

2. Individual counts for CentroidFold [ download as .csv ]

Performance of RSpredict(20) - scored lower in this pairwise comparison

1. Total counts & total scores for RSpredict(20)

2. Individual counts for RSpredict(20) [ download as .csv ]