CompaRNA - on-line benchmarks of RNA structure prediction methods

Laboratory of Structural Bioinformatics @ Adam Mickiewicz University in Poznan

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Overview

Metric	CentroidHomfold‑LAST		MXScarna(seed)
MCC	0.701	>	0.655
Average MCC ± 95% Confidence Intervals	0.718 ± 0.014	>	0.674 ± 0.016
Sensitivity	0.563	>	0.561
Positive Predictive Value	0.873	>	0.766
Total TP	26449	>	26332
Total TN	24331404	>	24327346
Total FP	5162	<	11196
Total FP CONTRA	597	<	1081
Total FP INCONS	3260	<	6951
Total FP COMP	1305	<	3164
Total FN	20495	<	20612
P-value	3.56938820447e-08

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Performance plots

Comparison of performance of CentroidHomfold-LAST and MXScarna(seed). Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data (individual counts for CentroidHomfold‑LAST and MXScarna(seed)).
Average Matthews Correlation Coefficients (MCC) with 95% confidence intervals (CIs) were plotted for different RNA families, for which at least 3 members were present in the benchmarking dataset. 'n' denotes the number of MCCs used to calculate the average and CI. See tables below for raw data (individual counts for CentroidHomfold‑LAST and MXScarna(seed)).
Comparison of average Matthews Correlation Coefficients (MCCs) for CentroidHomfold-LAST and MXScarna(seed). The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data (individual counts for CentroidHomfold‑LAST and MXScarna(seed)).

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Performance of CentroidHomfold‑LAST - scored higher in this pairwise comparison

1. Total counts & total scores for CentroidHomfold‑LAST

Total Base Pair Counts
Total TP	26449
Total TN	24331404
Total FP	5162
Total FP CONTRA	597
Total FP INCONS	3260
Total FP COMP	1305
Total FN	20495

Total Scores
MCC	0.701
Average MCC ± 95% Confidence Intervals	0.718 ± 0.014
Sensitivity	0.563
Positive Predictive Value	0.873
Nr of predictions	651

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2. Individual counts for CentroidHomfold‑LAST [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00001	RNaseP_arch links to Rfam database...	0.77	0.60	0.98	45	34145	5	0	1	4	30
ASE_00002	RNaseP_arch links to Rfam database...	0.82	0.77	0.88	56	35447	11	1	7	3	17
ASE_00004	RNaseP_bact_a links to Rfam database...	0.66	0.46	0.94	45	47847	3	1	2	0	52
ASE_00005	RNaseP_bact_a links to Rfam database...	0.81	0.67	0.98	78	57890	3	0	2	1	39
ASE_00006	RNaseP_bact_a links to Rfam database...	0.67	0.52	0.87	48	47531	7	1	6	0	45
ASE_00007	RNaseP_bact_a links to Rfam database...	0.79	0.65	0.95	72	59609	9	0	4	5	38
ASE_00009	RNaseP_arch links to Rfam database...	0.56	0.34	0.92	23	26081	3	0	2	1	44
ASE_00010	RNaseP_bact_b links to Rfam database...	0.59	0.37	0.97	30	49739	1	0	1	0	52
ASE_00012	RNaseP_bact_a links to Rfam database...	0.76	0.62	0.94	76	73839	7	2	3	2	47
ASE_00014	RNaseP_arch links to Rfam database...	0.55	0.35	0.86	37	54242	6	1	5	0	69
ASE_00017	RNaseP_nuc links to Rfam database...	0.56	0.38	0.83	24	51011	5	0	5	0	40
ASE_00018	RNaseP_bact_a links to Rfam database...	0.82	0.70	0.95	94	80502	7	0	5	2	40
ASE_00020	RNaseP_bact_a links to Rfam database...	0.66	0.48	0.91	60	73854	7	1	5	1	66
ASE_00021	RNaseP_bact_a links to Rfam database...	0.67	0.47	0.96	75	104118	5	0	3	2	85
ASE_00022	RNaseP_bact_b links to Rfam database...	0.67	0.52	0.87	65	82953	13	0	10	3	59
ASE_00023	RNaseP_bact_a links to Rfam database...	0.63	0.41	0.96	52	84201	4	0	2	2	75
ASE_00025	RNaseP_nuc links to Rfam database...	0.54	0.35	0.83	25	78576	5	0	5	0	46
ASE_00026	RNaseP_bact_a links to Rfam database...	0.67	0.50	0.89	55	59623	8	0	7	1	55
ASE_00028	RNaseP_bact_b links to Rfam database...	0.70	0.53	0.92	67	84593	8	0	6	2	59
ASE_00029	RNaseP_bact_a links to Rfam database...	0.65	0.49	0.86	60	82958	11	0	10	1	62
ASE_00030	RNaseP_bact_a links to Rfam database...	0.53	0.30	0.93	43	85445	3	1	2	0	102
ASE_00031	RNaseP_bact_a links to Rfam database...	0.76	0.59	0.97	74	86660	4	0	2	2	52
ASE_00032	RNaseP_bact_a links to Rfam database...	0.70	0.57	0.87	67	80123	12	0	10	2	51
ASE_00033	RNaseP_bact_a links to Rfam database...	0.78	0.63	0.96	76	64901	4	0	3	1	45
ASE_00035	RNaseP_bact_a links to Rfam database...	0.65	0.44	0.95	52	70445	8	1	2	5	66
ASE_00036	RNaseP_bact_a links to Rfam database...	0.67	0.52	0.87	68	75777	13	3	7	3	64
ASE_00037	RNaseP_bact_a links to Rfam database...	0.78	0.65	0.94	72	59263	8	0	5	3	38
ASE_00038	RNaseP_bact_a links to Rfam database...	0.79	0.66	0.94	67	53557	5	1	3	1	34
ASE_00040	RNaseP_bact_a links to Rfam database...	0.64	0.44	0.94	59	78940	5	2	2	1	74
ASE_00041	RNaseP_bact_a links to Rfam database...	0.73	0.56	0.95	61	57566	7	0	3	4	47
ASE_00042	RNaseP_bact_a links to Rfam database...	0.74	0.58	0.93	84	90010	6	1	5	0	61
ASE_00044	RNaseP_bact_a links to Rfam database...	0.82	0.70	0.97	73	54540	3	0	2	1	32
ASE_00045	RNaseP_bact_b links to Rfam database...	0.53	0.33	0.87	26	47248	4	0	4	0	54
ASE_00046	RNaseP_bact_a links to Rfam database...	0.73	0.56	0.95	58	50342	3	0	3	0	45
ASE_00047	RNaseP_bact_a links to Rfam database...	0.71	0.50	1.00	65	74240	0	0	0	0	65
ASE_00052	RNaseP_bact_a links to Rfam database...	0.53	0.33	0.84	37	61381	7	0	7	0	75
ASE_00053	RNaseP_bact_a links to Rfam database...	0.61	0.44	0.85	58	79333	12	3	7	2	75
ASE_00057	RNaseP_bact_a links to Rfam database...	0.66	0.51	0.87	68	82137	13	5	5	3	66
ASE_00064	RNaseP_bact_a links to Rfam database...	0.75	0.61	0.93	54	45393	8	0	4	4	35
ASE_00066	RNaseP_bact_a links to Rfam database...	0.73	0.53	1.00	69	72321	0	0	0	0	61
ASE_00068	RNaseP_bact_a links to Rfam database...	0.70	0.49	1.00	42	37633	0	0	0	0	43
ASE_00069	RNaseP_bact_a links to Rfam database...	0.70	0.56	0.88	79	82938	14	5	6	3	61
ASE_00074	RNaseP_bact_a links to Rfam database...	0.76	0.62	0.94	74	67817	7	1	4	2	45
ASE_00075	RNaseP_bact_a links to Rfam database...	0.62	0.42	0.93	68	108738	7	1	4	2	94
ASE_00076	RNaseP_bact_a links to Rfam database...	0.60	0.38	0.96	45	68218	2	0	2	0	73
ASE_00077	RNaseP_bact_a links to Rfam database...	0.77	0.65	0.90	56	45088	7	2	4	1	30
ASE_00078	RNaseP_bact_a links to Rfam database...	0.82	0.72	0.94	60	43007	5	1	3	1	23
ASE_00079	RNaseP_bact_a links to Rfam database...	0.63	0.42	0.93	42	55566	4	0	3	1	58
ASE_00080	RNaseP_bact_a links to Rfam database...	0.48	0.30	0.77	37	71583	11	0	11	0	86
ASE_00081	RNaseP_bact_a links to Rfam database...	0.71	0.55	0.93	53	49713	5	1	3	1	44
ASE_00082	RNaseP_bact_a links to Rfam database...	0.44	0.22	0.89	25	70472	3	0	3	0	91
ASE_00083	RNaseP_bact_a links to Rfam database...	0.72	0.56	0.93	62	62414	6	1	4	1	48
ASE_00084	RNaseP_bact_a links to Rfam database...	0.73	0.62	0.87	61	53558	11	2	7	2	38
ASE_00087	RNaseP_bact_a links to Rfam database...	0.58	0.44	0.77	63	88328	21	2	17	2	81
ASE_00090	RNaseP_bact_a links to Rfam database...	0.69	0.60	0.78	61	55533	17	1	16	0	40
ASE_00092	RNaseP_bact_a links to Rfam database...	0.68	0.49	0.96	55	63489	4	0	2	2	58
ASE_00096	RNaseP_bact_a links to Rfam database...	0.51	0.30	0.89	34	63508	5	0	4	1	81
ASE_00099	RNaseP_bact_a links to Rfam database...	0.82	0.68	0.98	82	64536	3	1	1	1	38
ASE_00100	RNaseP_nuc links to Rfam database...	0.54	0.34	0.84	26	82184	6	0	5	1	50
ASE_00102	RNaseP_bact_a links to Rfam database...	0.50	0.27	0.94	45	117807	3	1	2	0	121
ASE_00104	RNaseP_bact_a links to Rfam database...	0.80	0.69	0.93	82	64173	7	1	5	1	37
ASE_00105	RNaseP_bact_a links to Rfam database...	0.61	0.43	0.87	48	64206	9	0	7	2	63
ASE_00107	RNaseP_bact_a links to Rfam database...	0.78	0.72	0.84	91	73045	19	1	16	2	36
ASE_00108	RNaseP_nuc links to Rfam database...	0.59	0.41	0.84	26	46940	5	0	5	0	37
ASE_00111	RNaseP_nuc links to Rfam database...	0.60	0.44	0.83	25	50056	5	0	5	0	32
ASE_00112	RNaseP_bact_a links to Rfam database...	0.79	0.64	0.99	74	75391	4	0	1	3	42
ASE_00114	RNaseP_bact_b links to Rfam database...	0.51	0.36	0.72	28	45412	14	0	11	3	49
ASE_00115	RNaseP_bact_a links to Rfam database...	0.68	0.50	0.93	51	54560	7	0	4	3	50
ASE_00116	RNaseP_arch links to Rfam database...	0.48	0.23	1.00	15	31611	2	0	0	2	51
ASE_00118	RNaseP_bact_a links to Rfam database...	0.52	0.27	1.00	28	60698	2	0	0	2	74
ASE_00119	RNaseP_bact_a links to Rfam database...	0.34	0.13	0.88	14	62819	2	0	2	0	94
ASE_00120	RNaseP_arch links to Rfam database...	0.67	0.53	0.85	50	46912	9	1	8	0	44
ASE_00121	RNaseP_arch links to Rfam database...	0.57	0.39	0.82	36	45106	8	1	7	0	56
ASE_00122	RNaseP_bact_a links to Rfam database...	0.78	0.61	1.00	54	43311	0	0	0	0	34
ASE_00123	RNaseP_bact_a links to Rfam database...	0.64	0.46	0.89	39	38459	6	1	4	1	46
ASE_00125	RNaseP_bact_a links to Rfam database...	0.68	0.50	0.92	44	39292	5	1	3	1	44
ASE_00128	RNaseP_bact_a links to Rfam database...	0.72	0.56	0.93	56	53241	4	1	3	0	44
ASE_00129	RNaseP_bact_a links to Rfam database...	0.74	0.64	0.87	71	62753	13	1	10	2	40
ASE_00131	RNaseP_bact_a links to Rfam database...	0.63	0.45	0.88	38	39297	9	1	4	4	47
ASE_00132	RNaseP_bact_a links to Rfam database...	0.65	0.47	0.88	45	50352	7	2	4	1	50
ASE_00134	RNaseP_bact_a links to Rfam database...	0.74	0.61	0.91	58	50339	7	1	5	1	37
ASE_00135	RNaseP_bact_a links to Rfam database...	0.64	0.46	0.89	50	63134	7	1	5	1	59
ASE_00136	RNaseP_bact_a links to Rfam database...	0.75	0.61	0.92	56	48144	8	1	4	3	36
ASE_00137	RNaseP_bact_a links to Rfam database...	0.80	0.68	0.93	67	48444	5	1	4	0	31
ASE_00138	RNaseP_bact_a links to Rfam database...	0.80	0.65	0.98	53	40416	2	0	1	1	28
ASE_00139	RNaseP_bact_a links to Rfam database...	0.65	0.42	1.00	44	54241	0	0	0	0	60
ASE_00140	RNaseP_bact_a links to Rfam database...	0.66	0.47	0.92	59	70812	7	1	4	2	66
ASE_00142	RNaseP_bact_a links to Rfam database...	0.80	0.70	0.92	85	67069	8	3	4	1	37
ASE_00145	RNaseP_arch links to Rfam database...	0.64	0.50	0.81	56	70056	13	0	13	0	55
ASE_00146	RNaseP_bact_a links to Rfam database...	0.68	0.54	0.86	67	70798	12	1	10	1	57
ASE_00148	RNaseP_arch links to Rfam database...	0.49	0.27	0.89	41	112529	5	0	5	0	113
ASE_00151	RNaseP_bact_a links to Rfam database...	0.73	0.62	0.86	61	51932	10	4	6	0	37
ASE_00153	RNaseP_nuc links to Rfam database...	0.54	0.48	0.60	35	57572	43	2	21	20	38
ASE_00154	RNaseP_arch links to Rfam database...	0.60	0.43	0.85	46	65287	8	0	8	0	61
ASE_00155	RNaseP_arch links to Rfam database...	0.56	0.35	0.88	50	93471	7	0	7	0	92
ASE_00161	RNaseP_bact_b links to Rfam database...	0.71	0.53	0.96	46	53580	2	0	2	0	41
ASE_00163	RNaseP_bact_a links to Rfam database...	0.72	0.54	0.96	50	53249	2	0	2	0	43
ASE_00165	RNaseP_bact_a links to Rfam database...	0.67	0.50	0.89	51	52918	6	1	5	0	50
ASE_00168	RNaseP_nuc links to Rfam database...	0.44	0.25	0.76	16	60705	5	0	5	0	48
ASE_00169	RNaseP_bact_a links to Rfam database...	0.62	0.39	0.98	42	57248	1	0	1	0	65
ASE_00170	RNaseP_bact_a links to Rfam database...	0.70	0.55	0.89	51	48771	6	0	6	0	42
ASE_00171	RNaseP_bact_a links to Rfam database...	0.72	0.57	0.92	54	48457	7	1	4	2	40
ASE_00172	RNaseP_bact_a links to Rfam database...	0.69	0.49	0.98	52	58943	2	0	1	1	54
ASE_00174	RNaseP_bact_a links to Rfam database...	0.66	0.47	0.94	51	61021	3	1	2	0	58
ASE_00175	RNaseP_bact_a links to Rfam database...	0.53	0.42	0.66	45	59963	24	3	20	1	62
ASE_00176	RNaseP_bact_a links to Rfam database...	0.62	0.39	1.00	43	59988	0	0	0	0	67
ASE_00179	RNaseP_bact_a links to Rfam database...	0.71	0.52	0.96	44	44207	2	1	1	0	40
ASE_00180	RNaseP_bact_a links to Rfam database...	0.70	0.53	0.91	53	51302	6	0	5	1	47
ASE_00181	RNaseP_bact_a links to Rfam database...	0.71	0.54	0.95	57	57570	5	0	3	2	49
ASE_00182	RNaseP_bact_a links to Rfam database...	0.55	0.35	0.86	48	84199	8	1	7	0	88
ASE_00183	RNaseP_bact_a links to Rfam database...	0.67	0.47	0.96	53	61370	3	0	2	1	60
ASE_00184	RNaseP_bact_a links to Rfam database...	0.69	0.58	0.83	59	54544	13	2	10	1	43
ASE_00185	RNaseP_bact_a links to Rfam database...	0.62	0.41	0.95	52	73481	4	1	2	1	76
ASE_00186	RNaseP_bact_a links to Rfam database...	0.79	0.73	0.86	96	78892	16	1	14	1	36
ASE_00187	RNaseP_arch links to Rfam database...	0.65	0.44	0.94	51	68581	5	0	3	2	64
ASE_00189	RNaseP_bact_b links to Rfam database...	0.42	0.23	0.77	23	63160	7	0	7	0	79
ASE_00190	RNaseP_bact_b links to Rfam database...	0.46	0.23	0.91	21	45428	3	0	2	1	69
ASE_00191	RNaseP_arch links to Rfam database...	0.53	0.31	0.90	19	29625	2	0	2	0	42
ASE_00192	RNaseP_bact_b links to Rfam database...	0.30	0.09	1.00	12	84654	0	0	0	0	121
ASE_00194	RNaseP_bact_b links to Rfam database...	0.43	0.18	1.00	22	73514	0	0	0	0	97
ASE_00196	RNaseP_arch links to Rfam database...	0.65	0.47	0.90	35	31587	4	0	4	0	40
ASE_00197	RNaseP_bact_a links to Rfam database...	0.74	0.64	0.86	93	89145	15	1	14	0	52
ASE_00198	RNaseP_bact_a links to Rfam database...	0.80	0.68	0.96	69	52578	3	1	2	0	33
ASE_00203	RNaseP_bact_a links to Rfam database...	0.82	0.70	0.96	67	46595	4	1	2	1	29
ASE_00204	RNaseP_bact_b links to Rfam database...	0.33	0.13	0.83	15	67878	3	0	3	0	97
ASE_00205	RNaseP_arch links to Rfam database...	0.68	0.54	0.84	49	45998	12	0	9	3	41
ASE_00209	RNaseP_arch links to Rfam database...	0.63	0.45	0.87	40	43025	6	1	5	0	48
ASE_00210	RNaseP_arch links to Rfam database...	0.79	0.69	0.90	45	27211	5	0	5	0	20
ASE_00212	RNaseP_bact_a links to Rfam database...	0.75	0.65	0.86	96	93849	16	1	15	0	52
ASE_00213	RNaseP_arch links to Rfam database...	0.85	0.77	0.94	51	27207	5	0	3	2	15
ASE_00214	RNaseP_bact_a links to Rfam database...	0.69	0.59	0.80	61	56204	17	2	13	2	42
ASE_00215	RNaseP_bact_a links to Rfam database...	0.62	0.40	0.95	40	48474	3	1	1	1	59
ASE_00216	RNaseP_bact_a links to Rfam database...	0.82	0.71	0.95	58	39279	3	0	3	0	24
ASE_00217	RNaseP_bact_a links to Rfam database...	0.67	0.56	0.82	50	40409	14	1	10	3	40
ASE_00221	RNaseP_bact_a links to Rfam database...	0.75	0.61	0.93	71	64544	6	1	4	1	46
ASE_00222	RNaseP_arch links to Rfam database...	0.52	0.31	0.86	49	112044	8	0	8	0	108
ASE_00227	RNaseP_bact_a links to Rfam database...	0.41	0.18	0.92	24	78977	2	0	2	0	109
ASE_00228	RNaseP_bact_a links to Rfam database...	0.79	0.69	0.92	59	46907	6	2	3	1	27
ASE_00229	RNaseP_bact_a links to Rfam database...	0.79	0.69	0.90	60	42419	7	1	6	0	27
ASE_00231	RNaseP_bact_a links to Rfam database...	0.76	0.63	0.92	60	47830	5	1	4	0	36
ASE_00232	RNaseP_bact_a links to Rfam database...	0.85	0.75	0.95	63	38437	3	2	1	0	21
ASE_00234	RNaseP_bact_a links to Rfam database...	0.61	0.42	0.90	54	75406	8	1	5	2	75
ASE_00237	RNaseP_nuc links to Rfam database...	0.67	0.54	0.83	30	45717	6	0	6	0	26
ASE_00238	RNaseP_bact_a links to Rfam database...	0.57	0.37	0.89	42	64214	5	0	5	0	72
ASE_00240	RNaseP_bact_a links to Rfam database...	0.53	0.30	0.93	28	46635	2	1	1	0	65
ASE_00241	RNaseP_bact_a links to Rfam database...	0.73	0.64	0.84	56	43889	12	2	9	1	31
ASE_00242	RNaseP_bact_a links to Rfam database...	0.81	0.71	0.93	79	60990	7	0	6	1	33
ASE_00245	RNaseP_nuc links to Rfam database...	0.90	0.86	0.94	67	55207	31	0	4	27	11
ASE_00246	RNaseP_nuc links to Rfam database...	0.37	0.22	0.63	15	48181	9	1	8	0	52
ASE_00247	RNaseP_nuc links to Rfam database...	0.67	0.52	0.87	33	54247	5	0	5	0	31
ASE_00248	RNaseP_bact_a links to Rfam database...	0.82	0.71	0.94	81	62395	6	0	5	1	33
ASE_00250	RNaseP_bact_a links to Rfam database...	0.70	0.50	1.00	65	78938	0	0	0	0	66
ASE_00251	RNaseP_nuc links to Rfam database...	0.79	0.67	0.94	29	17735	5	0	2	3	14
ASE_00252	RNaseP_bact_a links to Rfam database...	0.58	0.37	0.93	62	115373	6	0	5	1	106
ASE_00254	RNaseP_bact_a links to Rfam database...	0.84	0.74	0.95	61	36792	4	2	1	1	21
ASE_00255	RNaseP_bact_a links to Rfam database...	0.73	0.57	0.94	74	74612	5	0	5	0	56
ASE_00257	RNaseP_bact_a links to Rfam database...	0.82	0.68	0.99	66	50973	2	0	1	1	31
ASE_00258	RNaseP_nuc links to Rfam database...	0.96	0.93	1.00	50	26746	5	0	0	5	4
ASE_00259	RNaseP_bact_a links to Rfam database...	0.60	0.40	0.91	48	73100	5	0	5	0	73
ASE_00263	RNaseP_bact_a links to Rfam database...	0.69	0.48	0.98	58	70441	2	0	1	1	62
ASE_00264	RNaseP_nuc links to Rfam database...	0.77	0.61	0.98	61	49079	7	0	1	6	39
ASE_00267	RNaseP_bact_a links to Rfam database...	0.72	0.66	0.79	58	45077	17	2	13	2	30
ASE_00270	RNaseP_bact_a links to Rfam database...	0.52	0.27	1.00	35	72355	0	0	0	0	93
ASE_00274	RNaseP_bact_a links to Rfam database...	0.66	0.47	0.92	48	55559	5	0	4	1	55
ASE_00277	RNaseP_bact_a links to Rfam database...	0.64	0.56	0.74	51	48136	21	3	15	3	40
ASE_00279	RNaseP_bact_a links to Rfam database...	0.72	0.58	0.89	59	53235	8	3	4	1	42
ASE_00280	RNaseP_bact_a links to Rfam database...	0.75	0.58	0.97	57	51944	3	0	2	1	41
ASE_00281	RNaseP_bact_a links to Rfam database...	0.81	0.68	0.97	60	44489	2	1	1	0	28
ASE_00282	RNaseP_bact_a links to Rfam database...	0.60	0.40	0.89	51	77758	7	3	3	1	76
ASE_00283	RNaseP_bact_a links to Rfam database...	0.71	0.56	0.91	60	61710	7	2	4	1	47
ASE_00284	RNaseP_bact_a links to Rfam database...	0.68	0.51	0.90	55	58250	7	2	4	1	53
ASE_00285	RNaseP_bact_a links to Rfam database...	0.63	0.44	0.89	54	68945	8	3	4	1	68
ASE_00286	RNaseP_bact_a links to Rfam database...	0.75	0.59	0.95	54	46608	3	1	2	0	38
ASE_00287	RNaseP_bact_a links to Rfam database...	0.66	0.49	0.91	50	54891	6	0	5	1	53
ASE_00288	RNaseP_bact_a links to Rfam database...	0.70	0.51	0.96	47	46007	2	0	2	0	46
ASE_00289	RNaseP_bact_a links to Rfam database...	0.53	0.30	0.94	47	100975	3	0	3	0	110
ASE_00292	RNaseP_bact_a links to Rfam database...	0.55	0.43	0.71	59	81727	25	3	21	1	79
ASE_00294	RNaseP_bact_a links to Rfam database...	0.75	0.60	0.94	103	114372	8	1	5	2	68
ASE_00295	RNaseP_bact_a links to Rfam database...	0.70	0.54	0.91	71	73842	8	1	6	1	60
ASE_00296	RNaseP_bact_a links to Rfam database...	0.71	0.53	0.96	77	91726	4	0	3	1	68
ASE_00297	RNaseP_bact_a links to Rfam database...	0.68	0.47	0.98	46	52928	1	0	1	0	52
ASE_00298	RNaseP_bact_a links to Rfam database...	0.62	0.39	1.00	44	67484	1	0	0	1	69
ASE_00299	RNaseP_bact_a links to Rfam database...	0.74	0.58	0.94	58	49393	8	1	3	4	42
ASE_00303	RNaseP_nuc links to Rfam database...	0.70	0.61	0.81	58	67824	24	0	14	10	37
ASE_00305	RNaseP_bact_b links to Rfam database...	0.81	0.71	0.94	60	54551	11	0	4	7	25
ASE_00313	RNaseP_nuc links to Rfam database...	0.62	0.52	0.74	46	62419	16	2	14	0	43
ASE_00316	RNaseP_nuc links to Rfam database...	0.57	0.41	0.78	40	107829	16	2	9	5	58
ASE_00318	RNaseP_bact_b links to Rfam database...	0.55	0.35	0.87	41	80153	12	0	6	6	77
ASE_00321	RNaseP_bact_b links to Rfam database...	0.81	0.67	0.98	59	54555	4	0	1	3	29
ASE_00327	RNaseP_nuc links to Rfam database...	0.78	0.70	0.87	62	57220	13	3	6	4	27
ASE_00328	RNaseP_bact_b links to Rfam database...	0.80	0.66	0.97	74	72695	9	0	2	7	38
ASE_00329	RNaseP_nuc links to Rfam database...	0.85	0.84	0.87	53	40694	31	6	2	23	10
ASE_00330	RNaseP_nuc links to Rfam database...	0.66	0.46	0.95	41	56237	6	0	2	4	49
ASE_00332	RNaseP_bact_a links to Rfam database...	0.80	0.71	0.89	98	81700	14	1	11	2	40
ASE_00335	RNaseP_bact_b links to Rfam database...	0.80	0.66	0.97	76	75388	8	0	2	6	40
ASE_00337	RNaseP_nuc links to Rfam database...	0.53	0.51	0.55	36	39275	45	5	24	16	35
ASE_00338	RNaseP_nuc links to Rfam database...	0.67	0.61	0.73	60	66348	36	3	19	14	38
ASE_00339	RNaseP_bact_a links to Rfam database...	0.79	0.64	0.97	76	80122	8	0	2	6	43
ASE_00340	RNaseP_bact_a links to Rfam database...	0.63	0.48	0.84	41	46007	11	6	2	3	44
ASE_00342	RNaseP_bact_a links to Rfam database...	0.82	0.75	0.90	86	62385	12	1	9	2	29
ASE_00343	RNaseP_bact_a links to Rfam database...	0.73	0.61	0.88	69	83358	16	0	9	7	44
ASE_00346	RNaseP_arch links to Rfam database...	0.52	0.41	0.67	40	48145	24	3	17	4	57
ASE_00353	RNaseP_bact_a links to Rfam database...	0.79	0.69	0.91	74	57889	7	1	6	0	33
ASE_00359	RNaseP_arch links to Rfam database...	0.44	0.23	0.86	18	42757	3	0	3	0	62
ASE_00360	RNaseP_arch links to Rfam database...	0.64	0.52	0.79	34	29360	9	1	8	0	31
ASE_00361	RNaseP_bact_a links to Rfam database...	0.65	0.43	0.96	55	75409	4	0	2	2	72
ASE_00362	RNaseP_bact_a links to Rfam database...	0.80	0.69	0.93	63	48137	7	1	4	2	28
ASE_00363	RNaseP_bact_a links to Rfam database...	0.75	0.64	0.88	60	51292	9	1	7	1	34
ASE_00364	RNaseP_bact_a links to Rfam database...	0.79	0.67	0.93	70	54210	6	1	4	1	35
ASE_00366	RNaseP_bact_a links to Rfam database...	0.68	0.49	0.94	48	58602	4	0	3	1	50
ASE_00367	RNaseP_bact_a links to Rfam database...	0.78	0.70	0.87	60	43002	11	1	8	2	26
ASE_00369	RNaseP_bact_a links to Rfam database...	0.79	0.64	0.97	68	55875	2	0	2	0	39
ASE_00370	RNaseP_bact_a links to Rfam database...	0.78	0.67	0.90	56	41843	7	1	5	1	28
ASE_00372	RNaseP_bact_a links to Rfam database...	0.70	0.54	0.90	54	51943	6	3	3	0	46
ASE_00374	RNaseP_bact_a links to Rfam database...	0.77	0.64	0.93	56	44790	4	2	2	0	32
ASE_00375	RNaseP_bact_a links to Rfam database...	0.71	0.50	1.00	55	60323	0	0	0	0	55
ASE_00376	RNaseP_bact_a links to Rfam database...	0.65	0.51	0.83	54	56888	15	0	11	4	51
ASE_00377	RNaseP_bact_a links to Rfam database...	0.75	0.62	0.92	66	57558	7	0	6	1	41
ASE_00379	RNaseP_bact_a links to Rfam database...	0.75	0.63	0.90	56	45994	6	2	4	0	33
ASE_00380	RNaseP_bact_a links to Rfam database...	0.69	0.47	1.00	47	54899	0	0	0	0	52
ASE_00382	RNaseP_bact_a links to Rfam database...	0.78	0.69	0.89	58	41840	8	1	6	1	26
ASE_00383	RNaseP_bact_a links to Rfam database...	0.79	0.66	0.95	69	54542	5	1	3	1	36
ASE_00384	RNaseP_bact_a links to Rfam database...	0.78	0.68	0.90	63	48446	8	1	6	1	29
ASE_00385	RNaseP_bact_a links to Rfam database...	0.68	0.53	0.88	43	41856	6	3	3	0	38
ASE_00386	RNaseP_bact_a links to Rfam database...	0.70	0.56	0.87	54	50341	9	1	7	1	42
ASE_00387	RNaseP_bact_a links to Rfam database...	0.63	0.45	0.87	47	55891	8	1	6	1	57
ASE_00388	RNaseP_bact_a links to Rfam database...	0.78	0.69	0.90	61	45685	9	1	6	2	28
ASE_00390	RNaseP_bact_a links to Rfam database...	0.81	0.72	0.91	61	42128	8	1	5	2	24
ASE_00393	RNaseP_bact_a links to Rfam database...	0.70	0.57	0.87	53	47834	9	1	7	1	40
ASE_00394	RNaseP_bact_a links to Rfam database...	0.72	0.62	0.83	58	46901	14	1	11	2	35
ASE_00395	RNaseP_bact_a links to Rfam database...	0.78	0.71	0.86	60	41546	12	1	9	2	24
ASE_00396	RNaseP_bact_a links to Rfam database...	0.78	0.71	0.86	59	41547	12	2	8	2	24
ASE_00397	RNaseP_bact_a links to Rfam database...	0.80	0.69	0.92	72	54537	7	1	5	1	33
ASE_00398	RNaseP_bact_a links to Rfam database...	0.68	0.53	0.87	55	55882	11	1	7	3	49
ASE_00400	RNaseP_bact_a links to Rfam database...	0.67	0.45	0.98	48	57921	1	0	1	0	58
ASE_00401	RNaseP_bact_a links to Rfam database...	0.60	0.37	0.98	47	76980	2	0	1	1	79
ASE_00402	RNaseP_bact_a links to Rfam database...	0.79	0.68	0.91	58	42422	8	1	5	2	27
ASE_00403	RNaseP_bact_a links to Rfam database...	0.75	0.63	0.91	67	55871	7	1	6	0	40
ASE_00404	RNaseP_bact_a links to Rfam database...	0.81	0.69	0.94	59	43008	5	0	4	1	26
ASE_00406	RNaseP_bact_a links to Rfam database...	0.73	0.62	0.85	58	48760	12	1	9	2	36
ASE_00411	RNaseP_bact_a links to Rfam database...	0.64	0.44	0.93	39	49413	3	0	3	0	50
ASE_00412	RNaseP_bact_a links to Rfam database...	0.62	0.40	0.98	42	58268	3	0	1	2	63
ASE_00413	RNaseP_bact_a links to Rfam database...	0.72	0.54	0.96	44	44505	2	0	2	0	37
ASE_00414	RNaseP_bact_a links to Rfam database...	0.62	0.47	0.80	45	46304	11	0	11	0	50
ASE_00415	RNaseP_bact_a links to Rfam database...	0.55	0.34	0.90	35	54907	4	0	4	0	68
ASE_00416	RNaseP_bact_a links to Rfam database...	0.58	0.36	0.92	46	77371	5	1	3	1	81
ASE_00417	RNaseP_arch links to Rfam database...	0.51	0.43	0.61	43	54545	28	1	26	1	57
ASE_00418	RNaseP_arch links to Rfam database...	0.42	0.33	0.53	25	38734	23	1	21	1	50
ASE_00419	RNaseP_bact_a links to Rfam database...	0.67	0.48	0.94	49	54894	3	1	2	0	54
ASE_00420	RNaseP_nuc links to Rfam database...	0.75	0.63	0.89	40	43320	10	0	5	5	23
ASE_00422	RNaseP_bact_a links to Rfam database...	0.72	0.55	0.95	52	46916	4	0	3	1	42
ASE_00423	RNaseP_bact_a links to Rfam database...	0.76	0.59	0.98	64	56888	2	1	0	1	45
ASE_00426	RNaseP_bact_a links to Rfam database...	0.52	0.27	1.00	29	61046	0	0	0	0	79
ASE_00427	RNaseP_nuc links to Rfam database...	0.48	0.43	0.54	20	40718	27	1	16	10	26
ASE_00428	RNaseP_bact_a links to Rfam database...	0.60	0.39	0.91	49	76582	6	1	4	1	76
ASE_00430	RNaseP_bact_a links to Rfam database...	0.77	0.61	0.98	59	46911	3	0	1	2	38
ASE_00431	RNaseP_bact_a links to Rfam database...	0.62	0.49	0.78	47	46300	13	1	12	0	48
ASE_00434	RNaseP_bact_b links to Rfam database...	0.50	0.26	0.94	29	68234	2	0	2	0	81
ASE_00437	RNaseP_bact_a links to Rfam database...	0.55	0.47	0.66	63	79305	35	1	32	2	72
ASE_00438	RNaseP_bact_a links to Rfam database...	0.43	0.18	1.00	21	66045	0	0	0	0	95
ASE_00441	RNaseP_bact_a links to Rfam database...	0.63	0.44	0.91	49	64207	9	0	5	4	63
ASE_00443	RNaseP_nuc links to Rfam database...	0.85	0.76	0.95	38	26756	24	0	2	22	12
ASE_00447	RNaseP_bact_a links to Rfam database...	0.73	0.55	0.97	64	60312	3	0	2	1	52
ASE_00448	RNaseP_bact_a links to Rfam database...	0.75	0.63	0.88	71	64180	11	1	9	1	41
ASE_00451	RNaseP_bact_a links to Rfam database...	0.77	0.72	0.83	90	70768	20	1	17	2	35
ASE_00454	RNaseP_nuc links to Rfam database...	0.46	0.38	0.55	24	43321	30	5	15	10	39
CRW_00013	Intron_gpI links to Rfam database...	0.62	0.42	0.92	48	103688	4	0	4	0	67
CRW_00016	Intron_gpI links to Rfam database...	0.70	0.50	0.97	60	77359	2	0	2	0	60
CRW_00610	Intron_gpI links to Rfam database...	0.66	0.46	0.95	37	36276	2	0	2	0	44
CRW_00613	Intron_gpI links to Rfam database...	0.74	0.55	1.00	43	34937	0	0	0	0	35
CRW_00614	Intron_gpI links to Rfam database...	0.21	0.18	0.25	10	121731	73	7	23	43	47
CRW_00618	Intron_gpI links to Rfam database...	0.38	0.25	0.58	15	56254	20	1	10	9	46
CRW_00633	Intron_gpI links to Rfam database...	0.64	0.42	0.98	45	63500	2	1	0	1	61
CRW_00634	Intron_gpI links to Rfam database...	0.69	0.54	0.88	51	64562	7	1	6	0	43
CRW_00670	Intron_gpI links to Rfam database...	0.69	0.50	0.95	60	70062	3	0	3	0	60
CRW_00671	Intron_gpI links to Rfam database...	0.66	0.48	0.92	56	62774	5	1	4	0	61
CRW_00672	Intron_gpI links to Rfam database...	0.69	0.50	0.96	55	72333	3	0	2	1	56
CRW_00674	Intron_gpI links to Rfam database...	0.76	0.57	1.00	71	83365	1	0	0	1	53
CRW_00676	Intron_gpI links to Rfam database...	0.73	0.55	0.98	63	93464	3	0	1	2	52
CRW_00692	Intron_gpI links to Rfam database...	0.82	0.70	0.95	63	68569	3	0	3	0	27
CRW_01484	5S_rRNA links to Rfam database...	0.88	0.79	0.97	31	7471	2	0	1	1	8
CRW_01499	5S_rRNA links to Rfam database...	0.78	0.63	0.96	26	7974	2	0	1	1	15
CRW_01507	5S_rRNA links to Rfam database...	0.78	0.61	1.00	25	7478	0	0	0	0	16
CRW_01535	5S_rRNA links to Rfam database...	0.79	0.78	0.81	29	7104	12	0	7	5	8
CRW_01590	5S_rRNA links to Rfam database...	0.87	0.84	0.91	31	7106	4	0	3	1	6
CRW_01603	5S_rRNA links to Rfam database...	0.86	0.81	0.91	30	7107	4	0	3	1	7
PDB_00005	Tymo_tRNA-like links to Rfam database...	0.70	0.50	1.00	7	939	0	0	0	0	7
PDB_00012	mir-TAR links to Rfam database...	1.00	1.00	1.00	7	399	1	0	0	1	0
PDB_00213	Gammaretro_CES links to Rfam database...	0.83	0.73	0.94	30	5018	2	0	2	0	11
PDB_00392	tRNA links to Rfam database...	0.79	0.81	0.77	17	2828	5	2	3	0	4
PDB_00553	mir-TAR links to Rfam database...	1.00	1.00	1.00	11	454	0	0	0	0	0
PDB_00716	HDV_ribozyme links to Rfam database...	0.25	0.22	0.29	5	2684	12	0	12	0	18
PDB_00741	Entero_5_CRE links to Rfam database...	0.87	0.76	1.00	13	690	0	0	0	0	4
PDB_00810	s2m links to Rfam database...	0.84	0.71	1.00	12	1069	0	0	0	0	5
PDB_00827	Intron_gpI links to Rfam database...	0.73	0.54	0.98	44	26983	2	0	1	1	37
PDB_00828	Purine links to Rfam database...	0.84	0.70	1.00	19	2466	0	0	0	0	8
PDB_00829	Purine links to Rfam database...	0.84	0.71	1.00	17	2261	0	0	0	0	7
PDB_00876	HIV_FE links to Rfam database...	0.92	0.90	0.95	18	971	1	0	1	0	2
PDB_00919	RNaseP_bact_a links to Rfam database...	0.62	0.40	0.95	41	44210	2	0	2	0	62
PDB_01001	tRNA links to Rfam database...	0.57	0.56	0.59	10	2128	7	3	4	0	8
PDB_01020	Purine links to Rfam database...	0.86	0.74	1.00	17	2261	0	0	0	0	6
PDB_01050	UnaL2 links to Rfam database...	0.78	0.62	1.00	8	622	1	0	0	1	5
PDB_01051	Telomerase-cil links to Rfam database...	0.96	0.92	1.00	12	891	4	0	0	4	1
PDB_01073	SAM links to Rfam database...	0.84	0.71	1.00	24	4347	1	0	0	1	10
PDB_01092	glmS links to Rfam database...	0.74	0.60	0.91	31	10119	5	0	3	2	21
PDB_01114	TPP links to Rfam database...	0.29	0.15	0.57	4	2843	3	0	3	0	23
PDB_01152	HIV_FS2 links to Rfam database...	0.88	0.79	1.00	11	550	0	0	0	0	3
PDB_01236	ykoK links to Rfam database...	0.84	0.72	0.98	39	11588	2	0	1	1	15
RFA_00389	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00390	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00391	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	2	0	0	2	1
RFA_00396	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	2	0	0	2	1
RFA_00402	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	0	0	0	0	0
RFA_00409	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	2	0	0	2	1
RFA_00416	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1470	2	0	0	2	0
RFA_00425	Hammerhead_3 links to Rfam database...	0.64	0.60	0.69	9	1640	9	0	4	5	6
RFA_00427	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1471	3	0	0	3	1
RFA_00433	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00434	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00436	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00440	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1470	2	0	0	2	0
RFA_00442	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00444	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1525	1	0	0	1	0
RFA_00446	Hammerhead_3 links to Rfam database...	0.89	0.80	1.00	12	1473	2	0	0	2	3
RFA_00449	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1471	2	0	0	2	1
RFA_00582	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	5980	17	0	0	17	0
RFA_00583	Y_RNA links to Rfam database...	0.93	0.93	0.93	14	4935	15	0	1	14	1
RFA_00584	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	2911	12	0	0	12	0
RFA_00585	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4836	12	0	0	12	0
RFA_00586	Y_RNA links to Rfam database...	0.97	0.93	1.00	14	3902	9	0	0	9	1
RFA_00587	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4836	15	0	0	15	0
RFA_00588	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4545	8	0	0	8	0
RFA_00589	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4356	17	0	0	17	0
RFA_00594	Y_RNA links to Rfam database...	0.97	0.93	1.00	14	2761	6	0	0	6	1
RFA_00596	Y_RNA links to Rfam database...	0.86	0.73	1.00	11	5984	15	0	0	15	4
RFA_00597	Telomerase-vert links to Rfam database...	0.50	0.25	1.00	27	97876	3	0	0	3	82
RFA_00598	Telomerase-vert links to Rfam database...	0.58	0.34	1.00	34	84632	5	0	0	5	67
RFA_00599	Telomerase-vert links to Rfam database...	0.65	0.46	0.91	51	101419	10	3	2	5	60
RFA_00600	Telomerase-vert links to Rfam database...	0.51	0.29	0.91	29	120263	7	0	3	4	71
RFA_00601	Telomerase-vert links to Rfam database...	0.86	0.82	0.91	93	99133	20	3	6	11	21
RFA_00602	Telomerase-vert links to Rfam database...	0.85	0.80	0.90	93	101372	20	3	7	10	23
RFA_00603	Telomerase-cil links to Rfam database...	0.78	0.71	0.86	25	13501	4	3	1	0	10
RFA_00604	Telomerase-cil links to Rfam database...	0.74	0.63	0.88	22	13505	8	3	0	5	13
RFA_00605	Telomerase-cil links to Rfam database...	0.43	0.34	0.55	12	15203	18	0	10	8	23
RFA_00606	Telomerase-cil links to Rfam database...	0.72	0.69	0.75	27	21285	17	7	2	8	12
RFA_00607	Telomerase-cil links to Rfam database...	0.91	0.83	1.00	30	17736	7	0	0	7	6
RFA_00609	Telomerase-cil links to Rfam database...	0.92	0.89	0.94	33	17920	11	0	2	9	4
RFA_00610	Telomerase-cil links to Rfam database...	0.89	0.84	0.94	31	17172	13	0	2	11	6
RFA_00611	Telomerase-cil links to Rfam database...	0.77	0.69	0.86	24	13013	4	3	1	0	11
RFA_00613	Telomerase-cil links to Rfam database...	0.73	0.66	0.82	23	12852	5	4	1	0	12
RFA_00615	Telomerase-cil links to Rfam database...	0.78	0.71	0.86	25	13337	4	3	1	0	10
RFA_00620	Telomerase-cil links to Rfam database...	0.23	0.15	0.35	6	21928	16	1	10	5	33
RFA_00621	RNase_MRP links to Rfam database...	0.53	0.50	0.56	38	46292	40	1	29	10	38
RFA_00623	RNase_MRP links to Rfam database...	0.53	0.50	0.57	39	43887	40	1	29	10	39
RFA_00624	RNase_MRP links to Rfam database...	0.40	0.16	1.00	10	30125	0	0	0	0	51
RFA_00626	rne5 links to Rfam database...	0.85	0.79	0.92	69	56541	13	1	5	7	18
RFA_00627	rne5 links to Rfam database...	0.86	0.75	0.98	65	56887	13	0	1	12	22
RFA_00628	rne5 links to Rfam database...	0.86	0.78	0.94	67	57220	7	1	3	3	19
RFA_00630	rne5 links to Rfam database...	0.87	0.83	0.92	72	56875	10	1	5	4	15
RFA_00632	HDV_ribozyme links to Rfam database...	0.51	0.50	0.52	14	4068	13	3	10	0	14
RFA_00636	HDV_ribozyme links to Rfam database...	0.64	0.64	0.64	18	3977	10	3	7	0	10
RFA_00639	7SK links to Rfam database...	0.51	0.46	0.56	40	54544	38	3	28	7	47
RFA_00642	Vimentin3 links to Rfam database...	0.00	0.00	0.00	0	2923	3	0	3	0	18
RFA_00643	Vimentin3 links to Rfam database...	0.50	0.33	0.75	6	2203	2	0	2	0	12
RFA_00644	Vimentin3 links to Rfam database...	0.27	0.22	0.33	4	2689	9	3	5	1	14
RFA_00645	Vimentin3 links to Rfam database...	-0.01	0.00	0.00	0	2405	10	2	8	0	18
RFA_00649	Vimentin3 links to Rfam database...	0.75	0.61	0.92	11	2133	1	0	1	0	7
RFA_00651	Vimentin3 links to Rfam database...	0.76	0.72	0.81	13	2064	4	0	3	1	5
RFA_00653	Vimentin3 links to Rfam database...	0.29	0.28	0.31	5	2129	11	3	8	0	13
RFA_00654	Vimentin3 links to Rfam database...	0.62	0.39	1.00	7	2408	0	0	0	0	11
RFA_00658	Hammerhead_1 links to Rfam database...	0.69	0.64	0.75	9	1116	5	0	3	2	5
RFA_00659	Hammerhead_1 links to Rfam database...	0.47	0.36	0.63	5	1120	5	0	3	2	9
RFA_00664	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	983	7	0	7	0	14
RFA_00667	Hammerhead_1 links to Rfam database...	0.30	0.29	0.33	4	978	9	1	7	1	10
RFA_00668	Hammerhead_1 links to Rfam database...	0.44	0.36	0.56	5	981	4	0	4	0	9
RFA_00672	Hammerhead_1 links to Rfam database...	0.68	0.46	1.00	6	897	0	0	0	0	7
RFA_00673	Hammerhead_1 links to Rfam database...	0.44	0.36	0.56	5	1119	5	0	4	1	9
RFA_00674	Hammerhead_1 links to Rfam database...	0.74	0.71	0.77	10	1115	4	0	3	1	4
RFA_00675	Hammerhead_1 links to Rfam database...	0.35	0.29	0.44	4	981	5	0	5	0	10
RFA_00677	Hammerhead_1 links to Rfam database...	0.74	0.71	0.77	10	977	5	0	3	2	4
RFA_00678	Hammerhead_1 links to Rfam database...	0.80	0.64	1.00	9	937	0	0	0	0	5
RFA_00680	Hammerhead_1 links to Rfam database...	0.74	0.71	0.77	10	1115	5	0	3	2	4
RFA_00684	Hammerhead_1 links to Rfam database...	0.84	0.71	1.00	10	980	1	0	0	1	4
RFA_00685	Hammerhead_1 links to Rfam database...	0.53	0.43	0.67	6	981	4	0	3	1	8
RFA_00695	Hammerhead_1 links to Rfam database...	0.43	0.43	0.43	6	7007	28	1	7	20	8
RFA_00703	Hammerhead_1 links to Rfam database...	0.43	0.43	0.43	6	4264	21	1	7	13	8
RFA_00704	Hammerhead_1 links to Rfam database...	0.67	0.57	0.80	8	980	3	0	2	1	6
RFA_00705	Hammerhead_1 links to Rfam database...	0.77	0.71	0.83	10	1023	2	0	2	0	4
RFA_00706	Hammerhead_1 links to Rfam database...	0.33	0.29	0.40	4	1025	6	0	6	0	10
RFA_00707	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	1027	8	0	8	0	14
RFA_00708	Hammerhead_1 links to Rfam database...	0.64	0.57	0.73	8	1024	3	0	3	0	6
RFA_00709	Hammerhead_1 links to Rfam database...	0.50	0.43	0.60	6	980	5	0	4	1	8
RFA_00710	Hammerhead_1 links to Rfam database...	0.70	0.50	1.00	7	983	0	0	0	0	7
RFA_00711	Hammerhead_1 links to Rfam database...	0.59	0.50	0.70	7	1025	3	0	3	0	7
RFA_00715	Hammerhead_1 links to Rfam database...	0.26	0.21	0.33	3	937	6	0	6	0	11
RFA_00716	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	939	7	0	7	0	14
RFA_00717	Hammerhead_1 links to Rfam database...	0.80	0.64	1.00	9	894	0	0	0	0	5
RFA_00730	s2m links to Rfam database...	1.00	1.00	1.00	12	891	1	0	0	1	0
RFA_00731	s2m links to Rfam database...	1.00	1.00	1.00	12	891	1	0	0	1	0
RFA_00733	s2m links to Rfam database...	1.00	1.00	1.00	12	891	1	0	0	1	0
RFA_00734	s2m links to Rfam database...	1.00	1.00	1.00	12	891	0	0	0	0	0
RFA_00736	s2m links to Rfam database...	1.00	1.00	1.00	12	891	1	0	0	1	0
RFA_00737	s2m links to Rfam database...	1.00	1.00	1.00	12	891	1	0	0	1	0
RFA_00745	s2m links to Rfam database...	1.00	1.00	1.00	12	934	1	0	0	1	0
RFA_00749	s2m links to Rfam database...	1.00	1.00	1.00	12	891	1	0	0	1	0
RFA_00758	s2m links to Rfam database...	0.96	0.92	1.00	11	892	0	0	0	0	1
RFA_00762	s2m links to Rfam database...	0.96	0.92	1.00	11	892	0	0	0	0	1
RFA_00763	s2m links to Rfam database...	1.00	1.00	1.00	12	891	1	0	0	1	0
RFA_00764	s2m links to Rfam database...	1.00	1.00	1.00	12	891	1	0	0	1	0
RFA_00765	s2m links to Rfam database...	1.00	1.00	1.00	12	891	1	0	0	1	0
RFA_00767	Corona_pk3 links to Rfam database...	0.66	0.44	1.00	8	1883	0	0	0	0	10
RFA_00768	Corona_pk3 links to Rfam database...	0.66	0.44	1.00	8	1883	0	0	0	0	10
RFA_00769	Corona_pk3 links to Rfam database...	0.54	0.56	0.53	10	1934	9	4	5	0	8
RFA_00770	Corona_pk3 links to Rfam database...	0.58	0.39	0.88	7	2008	1	0	1	0	11
RFA_00773	Corona_pk3 links to Rfam database...	0.55	0.56	0.56	10	1935	8	3	5	0	8
RFA_00779	Corona_pk3 links to Rfam database...	0.59	0.56	0.63	10	1937	6	2	4	0	8
RFA_00781	Gammaretro_CES links to Rfam database...	0.92	0.94	0.91	30	5017	3	2	1	0	2
RFA_00786	Gammaretro_CES links to Rfam database...	0.92	0.91	0.94	29	5019	2	2	0	0	3
RFA_00791	Gammaretro_CES links to Rfam database...	0.95	0.91	1.00	29	5122	1	0	0	1	3
RFA_00792	Gammaretro_CES links to Rfam database...	0.97	0.94	1.00	30	5020	0	0	0	0	2
RFA_00801	Gammaretro_CES links to Rfam database...	0.87	0.81	0.93	26	5022	3	0	2	1	6
RFA_00808	RydC links to Rfam database...	0.75	0.56	1.00	9	2007	0	0	0	0	7
RFA_00809	RydC links to Rfam database...	0.47	0.38	0.60	6	2135	4	0	4	0	10
RFA_00814	R2_retro_el links to Rfam database...	0.96	0.93	1.00	38	25162	6	0	0	6	3
RFA_00815	R2_retro_el links to Rfam database...	0.92	0.85	1.00	35	24496	1	0	0	1	6
RFA_00816	R2_retro_el links to Rfam database...	0.80	0.63	1.00	26	23194	1	0	0	1	15
RFA_00817	R2_retro_el links to Rfam database...	0.68	0.59	0.80	24	21915	9	2	4	3	17
RFA_00818	R2_retro_el links to Rfam database...	0.57	0.54	0.61	22	20265	18	8	6	4	19
RFA_00819	R2_retro_el links to Rfam database...	0.95	0.93	0.97	38	27927	15	0	1	14	3
SPR_00020	tRNA links to Rfam database...	0.92	0.85	1.00	17	2684	1	0	0	1	3
SPR_00023	tRNA links to Rfam database...	0.93	0.86	1.00	18	2832	0	0	0	0	3
SPR_00064	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00111	tRNA links to Rfam database...	1.00	1.00	1.00	21	2680	0	0	0	0	0
SPR_00113	tRNA links to Rfam database...	1.00	1.00	1.00	20	2755	1	0	0	1	0
SPR_00137	tRNA links to Rfam database...	0.93	0.86	1.00	18	2908	1	0	0	1	3
SPR_00273	tRNA links to Rfam database...	0.76	0.76	0.76	16	2829	5	0	5	0	5
SPR_00277	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00279	tRNA links to Rfam database...	0.82	0.67	1.00	14	2912	0	0	0	0	7
SPR_00314	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	1	0	0	1	0
SPR_00394	tRNA links to Rfam database...	0.62	0.57	0.67	12	3637	9	5	1	3	9
SPR_00402	tRNA links to Rfam database...	0.87	0.76	1.00	16	2540	0	0	0	0	5
SPR_00434	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00452	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00595	tRNA links to Rfam database...	0.78	0.76	0.80	16	2755	4	2	2	0	5
SPR_00721	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	1	0	0	1	0
SPR_00816	tRNA links to Rfam database...	0.34	0.35	0.33	7	3465	17	3	11	3	13
SPR_00867	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00912	tRNA links to Rfam database...	0.85	0.76	0.94	16	2986	2	0	1	1	5
SPR_01157	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	1	0	0	1	0
SRP_00001	Bacteria_large_SRP links to Rfam database...	0.84	0.75	0.94	30	6754	2	1	1	0	10
SRP_00002	Metazoa_SRP links to Rfam database...	0.95	0.91	0.99	93	45056	3	0	1	2	9
SRP_00006	Metazoa_SRP links to Rfam database...	0.96	0.92	1.00	93	45660	2	0	0	2	8
SRP_00008	Bacteria_small_SRP links to Rfam database...	0.94	0.88	1.00	22	2904	0	0	0	0	3
SRP_00009	Plant_SRP links to Rfam database...	0.85	0.77	0.93	79	46580	8	0	6	2	23
SRP_00011	Plant_SRP links to Rfam database...	0.81	0.77	0.86	80	46267	13	0	13	0	24
SRP_00012	Plant_SRP links to Rfam database...	0.92	0.86	0.99	87	46272	2	0	1	1	14
SRP_00015	Plant_SRP links to Rfam database...	0.92	0.86	0.99	85	46274	2	0	1	1	14
SRP_00016	Archaea_SRP links to Rfam database...	0.67	0.47	0.96	51	47842	3	0	2	1	58
SRP_00018	Fungi_SRP links to Rfam database...	0.63	0.57	0.70	46	38437	27	6	14	7	35
SRP_00019	Fungi_SRP links to Rfam database...	0.42	0.32	0.56	29	35994	24	6	17	1	62
SRP_00020	Bacteria_small_SRP links to Rfam database...	0.89	0.91	0.88	30	5531	4	1	3	0	3
SRP_00024	Bacteria_large_SRP links to Rfam database...	0.56	0.34	0.91	30	37642	3	0	3	0	57
SRP_00026	Bacteria_large_SRP links to Rfam database...	0.56	0.34	0.91	30	36823	3	0	3	0	58
SRP_00027	Bacteria_large_SRP links to Rfam database...	0.56	0.34	0.91	30	37095	3	0	3	0	57
SRP_00030	Bacteria_large_SRP links to Rfam database...	0.57	0.35	0.91	31	36822	3	0	3	0	57
SRP_00031	Bacteria_large_SRP links to Rfam database...	0.55	0.34	0.91	30	36282	3	0	3	0	59
SRP_00037	Bacteria_large_SRP links to Rfam database...	0.57	0.36	0.91	31	36551	3	0	3	0	56
SRP_00038	Bacteria_small_SRP links to Rfam database...	0.52	0.48	0.57	16	5022	12	0	12	0	17
SRP_00040	Bacteria_small_SRP links to Rfam database...	0.65	0.65	0.67	20	5535	11	1	9	1	11
SRP_00042	Bacteria_small_SRP links to Rfam database...	0.88	0.84	0.91	21	3982	3	1	1	1	4
SRP_00043	Bacteria_small_SRP links to Rfam database...	0.64	0.41	1.00	12	5038	1	0	0	1	17
SRP_00044	Bacteria_small_SRP links to Rfam database...	0.87	0.88	0.88	28	6073	5	1	3	1	4
SRP_00046	Bacteria_small_SRP links to Rfam database...	0.95	0.94	0.97	30	4722	2	0	1	1	2
SRP_00050	Metazoa_SRP links to Rfam database...	0.97	0.96	0.99	95	44754	5	0	1	4	4
SRP_00051	Bacteria_small_SRP links to Rfam database...	0.55	0.50	0.60	15	5435	10	1	9	0	15
SRP_00053	Metazoa_SRP links to Rfam database...	0.90	0.87	0.92	82	45061	16	0	7	9	12
SRP_00054	Bacteria_small_SRP links to Rfam database...	0.42	0.41	0.43	13	5535	17	0	17	0	19
SRP_00056	Bacteria_small_SRP links to Rfam database...	0.70	0.62	0.79	23	6412	6	1	5	0	14
SRP_00057	Bacteria_small_SRP links to Rfam database...	0.79	0.74	0.84	26	6297	6	1	4	1	9
SRP_00058	Bacteria_small_SRP links to Rfam database...	0.87	0.88	0.86	30	5743	6	1	4	1	4
SRP_00060	Metazoa_SRP links to Rfam database...	0.95	0.94	0.97	94	44454	8	0	3	5	6
SRP_00061	Metazoa_SRP links to Rfam database...	0.95	0.93	0.97	93	44754	9	0	3	6	7
SRP_00066	Metazoa_SRP links to Rfam database...	0.82	0.76	0.89	76	45366	11	0	9	2	24
SRP_00067	Bacteria_small_SRP links to Rfam database...	0.89	0.84	0.94	32	5744	2	1	1	0	6
SRP_00069	Fungi_SRP links to Rfam database...	0.50	0.34	0.73	29	34413	13	1	10	2	56
SRP_00072	Bacteria_small_SRP links to Rfam database...	0.95	0.90	1.00	26	6302	0	0	0	0	3
SRP_00073	Fungi_SRP links to Rfam database...	0.67	0.63	0.70	45	38996	34	4	15	15	26
SRP_00074	Bacteria_small_SRP links to Rfam database...	0.49	0.28	0.89	8	6546	1	0	1	0	21
SRP_00075	Bacteria_small_SRP links to Rfam database...	0.87	0.76	1.00	26	5539	0	0	0	0	8
SRP_00077	Bacteria_small_SRP links to Rfam database...	0.52	0.27	1.00	10	6660	0	0	0	0	27
SRP_00079	Plant_SRP links to Rfam database...	0.73	0.67	0.79	59	41830	21	3	13	5	29
SRP_00081	Bacteria_small_SRP links to Rfam database...	0.71	0.74	0.68	23	5531	11	1	10	0	8
SRP_00084	Bacteria_small_SRP links to Rfam database...	0.90	0.91	0.89	31	5425	4	1	3	0	3
SRP_00085	Plant_SRP links to Rfam database...	0.88	0.78	0.99	79	45371	3	0	1	2	22
SRP_00086	Metazoa_SRP links to Rfam database...	0.93	0.93	0.94	93	44154	10	0	6	4	7
SRP_00087	Fungi_SRP links to Rfam database...	0.16	0.17	0.16	10	37338	59	18	35	6	48
SRP_00088	Bacteria_large_SRP links to Rfam database...	0.56	0.35	0.91	31	34157	3	0	3	0	58
SRP_00089	Bacteria_large_SRP links to Rfam database...	0.55	0.33	0.91	30	35745	3	0	3	0	60
SRP_00090	Bacteria_large_SRP links to Rfam database...	0.56	0.34	0.91	31	35477	3	0	3	0	59
SRP_00091	Fungi_SRP links to Rfam database...	0.71	0.68	0.73	65	52886	26	4	20	2	30
SRP_00094	Bacteria_small_SRP links to Rfam database...	0.84	0.88	0.81	21	4069	5	1	4	0	3
SRP_00095	Bacteria_small_SRP links to Rfam database...	0.85	0.88	0.81	22	3978	5	1	4	0	3
SRP_00098	Bacteria_small_SRP links to Rfam database...	0.64	0.59	0.69	22	6409	11	1	9	1	15
SRP_00099	Plant_SRP links to Rfam database...	0.65	0.55	0.78	52	44783	16	3	12	1	43
SRP_00102	Metazoa_SRP links to Rfam database...	0.82	0.79	0.85	80	44457	17	5	9	3	21
SRP_00103	Metazoa_SRP links to Rfam database...	0.85	0.81	0.89	83	45358	12	1	9	2	19
SRP_00104	Fungi_SRP links to Rfam database...	0.36	0.36	0.35	25	34382	49	5	41	3	44
SRP_00105	Bacteria_small_SRP links to Rfam database...	0.87	0.76	1.00	26	5539	0	0	0	0	8
SRP_00106	Bacteria_large_SRP links to Rfam database...	0.57	0.44	0.73	11	5238	6	2	2	2	14
SRP_00107	Bacteria_small_SRP links to Rfam database...	0.43	0.47	0.39	9	3632	14	2	12	0	10
SRP_00117	Metazoa_SRP links to Rfam database...	0.96	0.92	1.00	94	45357	2	0	0	2	8
SRP_00121	Bacteria_small_SRP links to Rfam database...	0.81	0.76	0.86	19	4256	4	0	3	1	6
SRP_00123	Metazoa_SRP links to Rfam database...	0.73	0.56	0.94	51	36531	3	0	3	0	40
SRP_00124	Metazoa_SRP links to Rfam database...	0.39	0.18	0.88	15	37111	2	0	2	0	70
SRP_00127	Fungi_SRP links to Rfam database...	0.73	0.71	0.76	84	72280	27	5	21	1	35
SRP_00128	Bacteria_small_SRP links to Rfam database...	0.84	0.81	0.88	29	6753	5	1	3	1	7
SRP_00130	Archaea_SRP links to Rfam database...	0.57	0.38	0.86	37	49727	7	0	6	1	60
SRP_00132	Bacteria_small_SRP links to Rfam database...	0.70	0.72	0.68	21	4820	13	0	10	3	8
SRP_00134	Bacteria_large_SRP links to Rfam database...	0.65	0.66	0.66	19	5966	13	0	10	3	10
SRP_00136	Fungi_SRP links to Rfam database...	0.39	0.37	0.41	26	44190	43	11	26	6	45
SRP_00137	Bacteria_small_SRP links to Rfam database...	0.75	0.84	0.68	21	4155	10	4	6	0	4
SRP_00141	Bacteria_small_SRP links to Rfam database...	0.83	0.76	0.91	31	6294	4	1	2	1	10
SRP_00142	Archaea_SRP links to Rfam database...	0.80	0.73	0.87	68	45978	12	0	10	2	25
SRP_00143	Archaea_SRP links to Rfam database...	0.83	0.75	0.93	76	49688	10	0	6	4	25
SRP_00144	Archaea_SRP links to Rfam database...	0.86	0.79	0.94	74	46586	8	0	5	3	20
SRP_00145	Bacteria_small_SRP links to Rfam database...	0.90	0.85	0.94	34	6292	2	1	1	0	6
SRP_00146	Bacteria_small_SRP links to Rfam database...	0.89	0.86	0.91	31	5219	3	1	2	0	5
SRP_00148	Fungi_SRP links to Rfam database...	0.47	0.43	0.52	37	50015	44	2	32	10	50
SRP_00152	Plant_SRP links to Rfam database...	0.93	0.89	0.98	92	45659	3	0	2	1	11
SRP_00153	Plant_SRP links to Rfam database...	0.89	0.83	0.95	89	46877	6	0	5	1	18
SRP_00157	Fungi_SRP links to Rfam database...	0.32	0.32	0.32	23	44182	54	14	34	6	49
SRP_00158	Fungi_SRP links to Rfam database...	0.34	0.35	0.33	40	124131	85	33	47	5	75
SRP_00160	Fungi_SRP links to Rfam database...	0.38	0.28	0.51	37	86248	35	0	35	0	93
SRP_00161	Bacteria_small_SRP links to Rfam database...	0.89	0.91	0.87	20	2827	3	0	3	0	2
SRP_00162	Bacteria_small_SRP links to Rfam database...	0.89	0.91	0.88	21	2902	4	0	3	1	2
SRP_00163	Bacteria_small_SRP links to Rfam database...	0.91	0.92	0.89	24	3459	3	0	3	0	2
SRP_00164	Bacteria_small_SRP links to Rfam database...	0.82	0.74	0.90	26	6874	4	1	2	1	9
SRP_00170	Bacteria_small_SRP links to Rfam database...	0.94	0.96	0.92	24	4069	3	1	1	1	1
SRP_00171	Metazoa_SRP links to Rfam database...	0.56	0.45	0.69	40	45393	18	1	17	0	48
SRP_00173	Bacteria_large_SRP links to Rfam database...	0.54	0.32	0.91	29	38194	3	0	3	0	61
SRP_00174	Bacteria_large_SRP links to Rfam database...	0.56	0.35	0.91	30	38748	3	0	3	0	56
SRP_00175	Fungi_SRP links to Rfam database...	0.32	0.23	0.46	19	44510	27	3	19	5	65
SRP_00178	Plant_SRP links to Rfam database...	0.88	0.81	0.95	83	45666	6	0	4	2	19
SRP_00179	Plant_SRP links to Rfam database...	0.89	0.81	0.98	85	45969	6	0	2	4	20
SRP_00181	Plant_SRP links to Rfam database...	0.80	0.73	0.88	74	45972	12	0	10	2	28
SRP_00182	Plant_SRP links to Rfam database...	0.83	0.75	0.93	76	45974	8	0	6	2	25
SRP_00184	Plant_SRP links to Rfam database...	0.78	0.70	0.86	70	45975	15	0	11	4	30
SRP_00188	Plant_SRP links to Rfam database...	0.84	0.76	0.94	60	31061	6	0	4	2	19
SRP_00194	Bacteria_small_SRP links to Rfam database...	0.74	0.76	0.73	16	3218	6	0	6	0	5
SRP_00197	Archaea_SRP links to Rfam database...	0.70	0.51	0.96	52	49401	2	0	2	0	49
SRP_00198	Archaea_SRP links to Rfam database...	0.72	0.54	0.97	56	50982	2	0	2	0	47
SRP_00199	Archaea_SRP links to Rfam database...	0.68	0.50	0.95	52	50985	3	0	3	0	53
SRP_00200	Bacteria_small_SRP links to Rfam database...	0.81	0.78	0.85	28	6870	5	1	4	0	8
SRP_00201	Archaea_SRP links to Rfam database...	0.71	0.52	0.97	58	47835	3	0	2	1	53
SRP_00202	Archaea_SRP links to Rfam database...	0.77	0.62	0.95	73	54208	6	0	4	2	44
SRP_00203	Archaea_SRP links to Rfam database...	0.71	0.61	0.83	64	48751	18	0	13	5	41
SRP_00204	Archaea_SRP links to Rfam database...	0.73	0.59	0.91	60	49075	7	0	6	1	42
SRP_00206	Archaea_SRP links to Rfam database...	0.79	0.65	0.97	70	47823	3	0	2	1	38
SRP_00208	Archaea_SRP links to Rfam database...	0.81	0.66	0.99	67	46597	2	0	1	1	34
SRP_00209	Bacteria_small_SRP links to Rfam database...	0.95	0.96	0.93	26	4628	2	1	1	0	1
SRP_00213	Bacteria_small_SRP links to Rfam database...	0.94	0.96	0.92	24	4160	2	1	1	0	1
SRP_00215	Bacteria_small_SRP links to Rfam database...	0.83	0.80	0.87	20	3217	3	0	3	0	5
SRP_00216	Bacteria_small_SRP links to Rfam database...	0.91	0.89	0.92	24	3377	3	1	1	1	3
SRP_00217	Bacteria_small_SRP links to Rfam database...	0.94	0.96	0.92	23	3296	3	0	2	1	1
SRP_00219	Bacteria_small_SRP links to Rfam database...	0.94	0.96	0.92	22	3297	3	0	2	1	1
SRP_00222	Bacteria_small_SRP links to Rfam database...	0.94	0.96	0.92	24	3055	3	1	1	1	1
SRP_00227	Bacteria_small_SRP links to Rfam database...	0.92	0.94	0.91	29	5119	3	1	2	0	2
SRP_00228	Metazoa_SRP links to Rfam database...	0.95	0.93	0.98	88	45361	8	0	2	6	7
SRP_00229	Bacteria_small_SRP links to Rfam database...	0.37	0.37	0.37	10	5226	17	5	12	0	17
SRP_00230	Fungi_SRP links to Rfam database...	0.68	0.58	0.81	52	39557	14	0	12	2	38
SRP_00231	Bacteria_small_SRP links to Rfam database...	0.91	0.91	0.91	31	5426	3	1	2	0	3
SRP_00233	Bacteria_small_SRP links to Rfam database...	0.95	0.94	0.97	31	5119	1	0	1	0	2
SRP_00234	Bacteria_large_SRP links to Rfam database...	0.55	0.34	0.91	29	36283	3	0	3	0	57
SRP_00239	Plant_SRP links to Rfam database...	0.54	0.45	0.64	42	50337	25	2	22	1	51
SRP_00240	Plant_SRP links to Rfam database...	0.83	0.75	0.93	76	48123	8	0	6	2	26
SRP_00241	Plant_SRP links to Rfam database...	0.65	0.51	0.82	42	46005	10	0	9	1	40
SRP_00243	Bacteria_small_SRP links to Rfam database...	0.82	0.68	1.00	21	5130	1	0	0	1	10
SRP_00244	Bacteria_small_SRP links to Rfam database...	0.83	0.74	0.94	29	6872	3	1	1	1	10
SRP_00247	Metazoa_SRP links to Rfam database...	0.59	0.57	0.62	50	47197	34	4	27	3	37
SRP_00250	Bacteria_small_SRP links to Rfam database...	0.84	0.81	0.88	29	6753	4	1	3	0	7
SRP_00251	Bacteria_small_SRP links to Rfam database...	0.81	0.78	0.85	28	6988	5	1	4	0	8
SRP_00252	Metazoa_SRP links to Rfam database...	0.56	0.52	0.61	46	49066	31	5	24	2	43
SRP_00253	Metazoa_SRP links to Rfam database...	0.63	0.63	0.63	57	49364	39	6	28	5	33
SRP_00254	Fungi_SRP links to Rfam database...	0.44	0.39	0.49	24	32336	30	7	18	5	37
SRP_00255	Archaea_SRP links to Rfam database...	0.55	0.31	0.97	29	47556	3	0	1	2	65
SRP_00257	Metazoa_SRP links to Rfam database...	0.83	0.74	0.93	80	50954	8	3	3	2	28
SRP_00260	Metazoa_SRP links to Rfam database...	0.76	0.74	0.78	74	47800	23	4	17	2	26
SRP_00265	Fungi_SRP links to Rfam database...	0.45	0.38	0.54	28	41276	34	7	17	10	45
SRP_00266	Bacteria_small_SRP links to Rfam database...	0.59	0.55	0.64	16	4631	10	1	8	1	13
SRP_00267	Metazoa_SRP links to Rfam database...	0.94	0.93	0.96	89	44458	8	0	4	4	7
SRP_00268	Bacteria_small_SRP links to Rfam database...	0.95	0.96	0.93	26	4158	2	1	1	0	1
SRP_00269	Bacteria_small_SRP links to Rfam database...	0.95	0.91	1.00	30	5020	0	0	0	0	3
SRP_00270	Bacteria_small_SRP links to Rfam database...	0.95	0.94	0.97	29	4626	1	0	1	0	2
SRP_00271	Bacteria_small_SRP links to Rfam database...	0.94	0.92	0.96	22	3217	1	0	1	0	2
SRP_00273	Bacteria_small_SRP links to Rfam database...	0.82	0.75	0.91	30	6753	4	1	2	1	10
SRP_00274	Bacteria_small_SRP links to Rfam database...	0.85	0.79	0.91	30	6870	4	1	2	1	8
SRP_00276	Archaea_SRP links to Rfam database...	0.82	0.69	0.97	76	50643	3	0	2	1	34
SRP_00278	Archaea_SRP links to Rfam database...	0.57	0.34	0.95	36	46018	3	0	2	1	69
SRP_00282	Metazoa_SRP links to Rfam database...	0.34	0.40	0.29	25	43278	70	20	42	8	38
SRP_00285	Bacteria_small_SRP links to Rfam database...	0.95	0.93	0.97	28	3712	1	0	1	0	2
SRP_00290	Fungi_SRP links to Rfam database...	0.63	0.58	0.68	78	100462	39	2	34	3	57
SRP_00295	Bacteria_small_SRP links to Rfam database...	0.86	0.79	0.94	30	6871	3	1	1	1	8
SRP_00299	Metazoa_SRP links to Rfam database...	0.91	0.83	1.00	82	44171	3	0	0	3	17
SRP_00300	Metazoa_SRP links to Rfam database...	0.96	0.93	0.99	87	44165	4	0	1	3	7
SRP_00301	Fungi_SRP links to Rfam database...	0.64	0.57	0.72	49	32572	23	2	17	4	37
SRP_00302	Fungi_SRP links to Rfam database...	0.33	0.26	0.42	21	41566	34	3	26	5	60
SRP_00303	Bacteria_small_SRP links to Rfam database...	0.76	0.75	0.77	24	6639	8	1	6	1	8
SRP_00308	Bacteria_large_SRP links to Rfam database...	0.56	0.34	0.91	30	36282	3	0	3	0	58
SRP_00310	Bacteria_small_SRP links to Rfam database...	0.87	0.87	0.87	20	2903	3	0	3	0	3
SRP_00312	Bacteria_small_SRP links to Rfam database...	0.95	0.96	0.93	26	4158	2	1	1	0	1
SRP_00315	Bacteria_small_SRP links to Rfam database...	0.87	0.87	0.87	20	2903	3	0	3	0	3
SRP_00317	Metazoa_SRP links to Rfam database...	0.94	0.91	0.97	89	45058	10	0	3	7	9
SRP_00318	Bacteria_small_SRP links to Rfam database...	0.87	0.87	0.87	20	2980	3	0	3	0	3
SRP_00321	Archaea_SRP links to Rfam database...	0.70	0.52	0.93	56	47526	5	0	4	1	52
SRP_00322	Archaea_SRP links to Rfam database...	0.87	0.82	0.94	89	48421	7	0	6	1	20
SRP_00323	Archaea_SRP links to Rfam database...	0.88	0.83	0.93	89	47182	10	0	7	3	18
SRP_00324	Bacteria_small_SRP links to Rfam database...	0.53	0.34	0.83	10	5344	2	0	2	0	19
SRP_00325	Bacteria_small_SRP links to Rfam database...	0.95	0.94	0.97	31	4339	1	0	1	0	2
SRP_00326	Bacteria_small_SRP links to Rfam database...	0.95	0.94	0.97	29	5020	1	0	1	0	2
SRP_00328	Metazoa_SRP links to Rfam database...	0.67	0.66	0.69	56	39540	29	7	18	4	29
SRP_00329	Metazoa_SRP links to Rfam database...	0.64	0.61	0.68	52	39826	28	4	21	3	33
SRP_00330	Archaea_SRP links to Rfam database...	0.78	0.65	0.94	62	50020	6	0	4	2	33
SRP_00331	Metazoa_SRP links to Rfam database...	0.60	0.53	0.69	46	37608	21	1	20	0	41
SRP_00332	Archaea_SRP links to Rfam database...	0.85	0.75	0.96	79	50321	4	0	3	1	27
SRP_00333	Bacteria_small_SRP links to Rfam database...	0.94	0.91	0.97	31	5119	1	0	1	0	3
SRP_00335	Bacteria_large_SRP links to Rfam database...	0.51	0.44	0.59	17	35216	17	7	5	5	22
SRP_00337	Bacteria_large_SRP links to Rfam database...	0.55	0.33	0.91	30	35478	4	0	3	1	61
SRP_00338	Bacteria_small_SRP links to Rfam database...	0.96	0.94	0.97	34	5425	1	0	1	0	2
SRP_00339	Archaea_SRP links to Rfam database...	0.86	0.84	0.89	79	44462	13	0	10	3	15
SRP_00340	Metazoa_SRP links to Rfam database...	0.61	0.39	0.97	32	41295	1	0	1	0	50
SRP_00341	Bacteria_small_SRP links to Rfam database...	0.46	0.39	0.55	12	4731	10	0	10	0	19
SRP_00342	Bacteria_small_SRP links to Rfam database...	0.66	0.44	1.00	11	3994	0	0	0	0	14
SRP_00347	Metazoa_SRP links to Rfam database...	0.94	0.92	0.97	88	46574	8	0	3	5	8
SRP_00350	Bacteria_small_SRP links to Rfam database...	0.67	0.59	0.76	16	3895	5	3	2	0	11
SRP_00356	Bacteria_small_SRP links to Rfam database...	0.78	0.70	0.88	21	5026	3	0	3	0	9
SRP_00357	Bacteria_small_SRP links to Rfam database...	0.90	0.86	0.94	31	5323	3	1	1	1	5
SRP_00358	Bacteria_small_SRP links to Rfam database...	0.90	0.86	0.94	30	6296	3	1	1	1	5
SRP_00361	Plant_SRP links to Rfam database...	0.82	0.81	0.82	73	41816	24	2	14	8	17
SRP_00363	Bacteria_small_SRP links to Rfam database...	0.95	0.97	0.94	29	4722	4	0	2	2	1
SRP_00365	Bacteria_small_SRP links to Rfam database...	0.92	0.89	0.96	24	3378	1	0	1	0	3
SRP_00367	Bacteria_small_SRP links to Rfam database...	0.88	0.83	0.94	29	6755	2	1	1	0	6
SRP_00368	Metazoa_SRP links to Rfam database...	0.91	0.89	0.94	87	43863	9	0	6	3	11
SRP_00369	Bacteria_small_SRP links to Rfam database...	0.86	0.80	0.93	28	5748	2	1	1	0	7
SRP_00371	Fungi_SRP links to Rfam database...	0.68	0.60	0.77	49	36251	16	2	13	1	33
SRP_00383	Bacteria_small_SRP links to Rfam database...	0.87	0.83	0.91	20	3218	2	0	2	0	4
TMR_00173	tmRNA links to Rfam database...	0.58	0.33	1.00	14	42181	0	0	0	0	28
TMR_00357	tmRNA links to Rfam database...	0.44	0.23	0.84	21	83003	4	0	4	0	71
TMR_00601	tmRNA links to Rfam database...	0.80	0.69	0.94	29	58965	10	0	2	8	13
TMR_00603	tmRNA links to Rfam database...	0.82	0.72	0.94	31	60345	12	1	1	10	12
TMR_00611	tmRNA links to Rfam database...	0.68	0.60	0.77	61	61346	20	4	14	2	41
TMR_00696	tmRNA links to Rfam database...	0.46	0.28	0.76	32	85036	10	2	8	0	82

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Performance of MXScarna(seed) - scored lower in this pairwise comparison

1. Total counts & total scores for MXScarna(seed)

Total Base Pair Counts
Total TP	26332
Total TN	24327346
Total FP	11196
Total FP CONTRA	1081
Total FP INCONS	6951
Total FP COMP	3164
Total FN	20612

Total Scores
MCC	0.655
Average MCC ± 95% Confidence Intervals	0.674 ± 0.016
Sensitivity	0.561
Positive Predictive Value	0.766
Nr of predictions	651

^top

2. Individual counts for MXScarna(seed) [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00001	RNaseP_arch links to Rfam database...	0.67	0.51	0.88	38	34148	6	0	5	1	37
ASE_00002	RNaseP_arch links to Rfam database...	0.68	0.53	0.87	39	35466	7	1	5	1	34
ASE_00004	RNaseP_bact_a links to Rfam database...	0.52	0.41	0.65	40	47833	24	4	18	2	57
ASE_00005	RNaseP_bact_a links to Rfam database...	0.72	0.57	0.92	67	57897	8	2	4	2	50
ASE_00006	RNaseP_bact_a links to Rfam database...	0.51	0.41	0.63	38	47526	25	3	19	3	55
ASE_00007	RNaseP_bact_a links to Rfam database...	0.82	0.75	0.90	83	59593	12	4	5	3	27
ASE_00009	RNaseP_arch links to Rfam database...	0.68	0.57	0.81	38	26059	10	1	8	1	29
ASE_00010	RNaseP_bact_b links to Rfam database...	0.70	0.63	0.76	52	49702	27	4	12	11	30
ASE_00012	RNaseP_bact_a links to Rfam database...	0.64	0.55	0.75	68	73829	26	4	19	3	55
ASE_00014	RNaseP_arch links to Rfam database...	0.67	0.52	0.87	55	54222	9	0	8	1	51
ASE_00017	RNaseP_nuc links to Rfam database...	0.49	0.41	0.59	26	50996	36	2	16	18	38
ASE_00018	RNaseP_bact_a links to Rfam database...	0.77	0.64	0.91	86	80507	11	2	6	3	48
ASE_00020	RNaseP_bact_a links to Rfam database...	0.50	0.36	0.71	45	73857	21	6	12	3	81
ASE_00021	RNaseP_bact_a links to Rfam database...	0.49	0.36	0.66	57	104110	34	4	25	5	103
ASE_00022	RNaseP_bact_b links to Rfam database...	0.66	0.58	0.75	72	82932	31	5	19	7	52
ASE_00023	RNaseP_bact_a links to Rfam database...	0.27	0.20	0.37	25	84188	47	2	40	5	102
ASE_00025	RNaseP_nuc links to Rfam database...	0.53	0.42	0.67	30	78561	28	0	15	13	41
ASE_00026	RNaseP_bact_a links to Rfam database...	0.74	0.65	0.85	72	59600	18	5	8	5	38
ASE_00028	RNaseP_bact_b links to Rfam database...	0.69	0.60	0.78	76	84569	29	5	16	8	50
ASE_00029	RNaseP_bact_a links to Rfam database...	0.24	0.18	0.32	22	82960	50	6	40	4	100
ASE_00030	RNaseP_bact_a links to Rfam database...	0.65	0.46	0.91	67	85417	9	3	4	2	78
ASE_00031	RNaseP_bact_a links to Rfam database...	0.31	0.23	0.43	29	86668	41	3	36	2	97
ASE_00032	RNaseP_bact_a links to Rfam database...	0.20	0.15	0.28	18	80135	55	0	47	8	100
ASE_00033	RNaseP_bact_a links to Rfam database...	0.77	0.67	0.89	81	64889	14	3	7	4	40
ASE_00035	RNaseP_bact_a links to Rfam database...	0.75	0.66	0.86	78	70409	18	3	10	5	40
ASE_00036	RNaseP_bact_a links to Rfam database...	0.60	0.50	0.73	66	75764	28	3	22	3	66
ASE_00037	RNaseP_bact_a links to Rfam database...	0.86	0.79	0.94	87	59247	9	2	4	3	23
ASE_00038	RNaseP_bact_a links to Rfam database...	0.69	0.56	0.84	57	53560	14	1	10	3	44
ASE_00040	RNaseP_bact_a links to Rfam database...	0.69	0.59	0.80	78	78906	22	4	15	3	55
ASE_00041	RNaseP_bact_a links to Rfam database...	0.80	0.72	0.90	78	57543	12	2	7	3	30
ASE_00042	RNaseP_bact_a links to Rfam database...	0.68	0.52	0.87	76	90013	14	1	10	3	69
ASE_00044	RNaseP_bact_a links to Rfam database...	0.85	0.78	0.93	82	54527	9	3	3	3	23
ASE_00045	RNaseP_bact_b links to Rfam database...	0.64	0.58	0.72	46	47214	28	4	14	10	34
ASE_00046	RNaseP_bact_a links to Rfam database...	0.76	0.66	0.87	68	50325	13	1	9	3	35
ASE_00047	RNaseP_bact_a links to Rfam database...	0.74	0.60	0.92	78	74220	8	2	5	1	52
ASE_00052	RNaseP_bact_a links to Rfam database...	0.64	0.55	0.75	62	61342	24	3	18	3	50
ASE_00053	RNaseP_bact_a links to Rfam database...	0.60	0.47	0.76	63	79318	24	4	16	4	70
ASE_00057	RNaseP_bact_a links to Rfam database...	0.71	0.57	0.88	77	82127	14	4	7	3	57
ASE_00064	RNaseP_bact_a links to Rfam database...	0.82	0.71	0.94	63	45384	7	1	3	3	26
ASE_00066	RNaseP_bact_a links to Rfam database...	0.71	0.57	0.88	74	72306	11	3	7	1	56
ASE_00068	RNaseP_bact_a links to Rfam database...	0.67	0.52	0.88	44	37625	8	1	5	2	41
ASE_00069	RNaseP_bact_a links to Rfam database...	0.62	0.49	0.79	69	82941	22	3	15	4	71
ASE_00074	RNaseP_bact_a links to Rfam database...	0.81	0.70	0.94	83	67808	9	2	3	4	36
ASE_00075	RNaseP_bact_a links to Rfam database...	0.49	0.35	0.69	56	108730	31	3	22	6	106
ASE_00076	RNaseP_bact_a links to Rfam database...	0.42	0.32	0.55	38	68196	33	2	29	2	80
ASE_00077	RNaseP_bact_a links to Rfam database...	0.77	0.70	0.85	60	45079	14	4	7	3	26
ASE_00078	RNaseP_bact_a links to Rfam database...	0.79	0.72	0.87	60	43002	13	2	7	4	23
ASE_00079	RNaseP_bact_a links to Rfam database...	0.41	0.33	0.52	33	55548	32	1	29	2	67
ASE_00080	RNaseP_bact_a links to Rfam database...	0.37	0.30	0.47	37	71552	44	6	36	2	86
ASE_00081	RNaseP_bact_a links to Rfam database...	0.76	0.67	0.87	65	49695	13	2	8	3	32
ASE_00082	RNaseP_bact_a links to Rfam database...	0.35	0.24	0.50	28	70444	31	1	27	3	88
ASE_00083	RNaseP_bact_a links to Rfam database...	0.71	0.56	0.89	62	62411	11	1	7	3	48
ASE_00084	RNaseP_bact_a links to Rfam database...	0.71	0.59	0.85	58	53560	14	1	9	4	41
ASE_00087	RNaseP_bact_a links to Rfam database...	0.31	0.21	0.46	30	88345	36	0	35	1	114
ASE_00090	RNaseP_bact_a links to Rfam database...	0.66	0.54	0.81	55	55543	16	2	11	3	46
ASE_00092	RNaseP_bact_a links to Rfam database...	0.56	0.43	0.73	49	63479	21	2	16	3	64
ASE_00096	RNaseP_bact_a links to Rfam database...	0.41	0.30	0.55	35	63482	31	1	28	2	80
ASE_00099	RNaseP_bact_a links to Rfam database...	0.83	0.73	0.96	87	64529	7	2	2	3	33
ASE_00100	RNaseP_nuc links to Rfam database...	0.54	0.41	0.70	31	82171	27	1	12	14	45
ASE_00102	RNaseP_bact_a links to Rfam database...	0.47	0.34	0.63	57	117765	36	5	28	3	109
ASE_00104	RNaseP_bact_a links to Rfam database...	0.82	0.73	0.93	87	64167	10	2	5	3	32
ASE_00105	RNaseP_bact_a links to Rfam database...	0.51	0.38	0.70	42	64201	21	5	13	3	69
ASE_00107	RNaseP_bact_a links to Rfam database...	0.78	0.68	0.91	86	73058	12	2	7	3	41
ASE_00108	RNaseP_nuc links to Rfam database...	0.54	0.43	0.68	27	46931	25	0	13	12	36
ASE_00111	RNaseP_nuc links to Rfam database...	0.68	0.54	0.86	31	50050	23	0	5	18	26
ASE_00112	RNaseP_bact_a links to Rfam database...	0.32	0.25	0.42	29	75397	42	7	33	2	87
ASE_00114	RNaseP_bact_b links to Rfam database...	0.50	0.45	0.55	35	45387	40	4	25	11	42
ASE_00115	RNaseP_bact_a links to Rfam database...	0.54	0.43	0.68	43	54552	23	1	19	3	58
ASE_00116	RNaseP_arch links to Rfam database...	0.35	0.27	0.46	18	31587	22	1	20	1	48
ASE_00118	RNaseP_bact_a links to Rfam database...	0.39	0.30	0.50	31	60664	34	3	28	3	71
ASE_00119	RNaseP_bact_a links to Rfam database...	0.30	0.24	0.38	26	62767	43	2	40	1	82
ASE_00120	RNaseP_arch links to Rfam database...	0.72	0.57	0.92	54	46912	7	0	5	2	40
ASE_00121	RNaseP_arch links to Rfam database...	0.77	0.63	0.94	58	45088	5	0	4	1	34
ASE_00122	RNaseP_bact_a links to Rfam database...	0.66	0.58	0.75	51	43297	20	1	16	3	37
ASE_00123	RNaseP_bact_a links to Rfam database...	0.67	0.53	0.85	45	38450	10	2	6	2	40
ASE_00125	RNaseP_bact_a links to Rfam database...	0.68	0.51	0.90	45	39290	7	1	4	2	43
ASE_00128	RNaseP_bact_a links to Rfam database...	0.66	0.54	0.82	54	53235	15	1	11	3	46
ASE_00129	RNaseP_bact_a links to Rfam database...	0.68	0.53	0.88	59	62768	11	1	7	3	52
ASE_00131	RNaseP_bact_a links to Rfam database...	0.63	0.47	0.83	40	39292	10	1	7	2	45
ASE_00132	RNaseP_bact_a links to Rfam database...	0.48	0.40	0.57	38	50336	31	4	25	2	57
ASE_00134	RNaseP_bact_a links to Rfam database...	0.73	0.62	0.86	59	50334	13	1	9	3	36
ASE_00135	RNaseP_bact_a links to Rfam database...	0.40	0.32	0.51	35	63121	35	4	30	1	74
ASE_00136	RNaseP_bact_a links to Rfam database...	0.78	0.67	0.91	62	48137	9	1	5	3	30
ASE_00137	RNaseP_bact_a links to Rfam database...	0.53	0.43	0.66	42	48452	25	2	20	3	56
ASE_00138	RNaseP_bact_a links to Rfam database...	0.73	0.63	0.85	51	40410	13	3	6	4	30
ASE_00139	RNaseP_bact_a links to Rfam database...	0.48	0.35	0.67	36	54231	19	0	18	1	68
ASE_00140	RNaseP_bact_a links to Rfam database...	0.47	0.34	0.65	42	70811	26	3	20	3	83
ASE_00142	RNaseP_bact_a links to Rfam database...	0.79	0.70	0.89	86	67064	14	3	8	3	36
ASE_00145	RNaseP_arch links to Rfam database...	0.58	0.40	0.85	44	70073	9	0	8	1	67
ASE_00146	RNaseP_bact_a links to Rfam database...	0.78	0.66	0.92	82	70787	10	2	5	3	42
ASE_00148	RNaseP_arch links to Rfam database...	0.47	0.28	0.80	43	112521	12	0	11	1	111
ASE_00151	RNaseP_bact_a links to Rfam database...	0.79	0.71	0.88	70	51923	13	7	3	3	28
ASE_00153	RNaseP_nuc links to Rfam database...	0.60	0.48	0.76	35	57584	26	0	11	15	38
ASE_00154	RNaseP_arch links to Rfam database...	0.61	0.50	0.76	53	65271	18	4	13	1	54
ASE_00155	RNaseP_arch links to Rfam database...	0.54	0.35	0.83	50	93468	12	0	10	2	92
ASE_00161	RNaseP_bact_b links to Rfam database...	0.69	0.64	0.75	56	53553	29	4	15	10	31
ASE_00163	RNaseP_bact_a links to Rfam database...	0.79	0.70	0.89	65	53228	11	2	6	3	28
ASE_00165	RNaseP_bact_a links to Rfam database...	0.56	0.43	0.74	43	52917	19	1	14	4	58
ASE_00168	RNaseP_nuc links to Rfam database...	0.59	0.48	0.72	31	60683	27	0	12	15	33
ASE_00169	RNaseP_bact_a links to Rfam database...	0.47	0.34	0.65	36	57236	22	1	18	3	71
ASE_00170	RNaseP_bact_a links to Rfam database...	0.71	0.62	0.82	58	48757	16	2	11	3	35
ASE_00171	RNaseP_bact_a links to Rfam database...	0.59	0.49	0.71	46	48451	22	1	18	3	48
ASE_00172	RNaseP_bact_a links to Rfam database...	0.59	0.46	0.75	49	58931	19	4	12	3	57
ASE_00174	RNaseP_bact_a links to Rfam database...	0.54	0.42	0.69	46	61008	24	3	18	3	63
ASE_00175	RNaseP_bact_a links to Rfam database...	0.71	0.55	0.91	59	59966	9	1	5	3	48
ASE_00176	RNaseP_bact_a links to Rfam database...	0.46	0.35	0.60	38	59968	27	1	24	2	72
ASE_00179	RNaseP_bact_a links to Rfam database...	0.57	0.49	0.66	41	44191	24	4	17	3	43
ASE_00180	RNaseP_bact_a links to Rfam database...	0.72	0.61	0.85	61	51288	14	2	9	3	39
ASE_00181	RNaseP_bact_a links to Rfam database...	0.59	0.45	0.76	48	57567	19	3	12	4	58
ASE_00182	RNaseP_bact_a links to Rfam database...	0.35	0.24	0.51	33	84190	33	3	29	1	103
ASE_00183	RNaseP_bact_a links to Rfam database...	0.65	0.52	0.81	59	61352	17	0	14	3	54
ASE_00184	RNaseP_bact_a links to Rfam database...	0.69	0.55	0.86	56	54550	12	0	9	3	46
ASE_00185	RNaseP_bact_a links to Rfam database...	0.23	0.16	0.32	21	73470	46	8	37	1	107
ASE_00186	RNaseP_bact_a links to Rfam database...	0.72	0.62	0.84	82	78905	21	2	14	5	50
ASE_00187	RNaseP_arch links to Rfam database...	0.58	0.43	0.78	49	68572	17	1	13	3	66
ASE_00189	RNaseP_bact_b links to Rfam database...	0.63	0.57	0.70	58	63107	35	5	20	10	44
ASE_00190	RNaseP_bact_b links to Rfam database...	0.53	0.42	0.67	38	45394	23	5	14	4	52
ASE_00191	RNaseP_arch links to Rfam database...	0.82	0.70	0.96	43	29601	4	0	2	2	18
ASE_00192	RNaseP_bact_b links to Rfam database...	0.29	0.23	0.38	30	84588	51	6	42	3	103
ASE_00194	RNaseP_bact_b links to Rfam database...	0.60	0.50	0.71	60	73452	32	5	19	8	59
ASE_00196	RNaseP_arch links to Rfam database...	0.66	0.52	0.85	39	31580	9	0	7	2	36
ASE_00197	RNaseP_bact_a links to Rfam database...	0.67	0.55	0.82	80	89156	20	2	15	3	65
ASE_00198	RNaseP_bact_a links to Rfam database...	0.75	0.61	0.93	62	52583	8	1	4	3	40
ASE_00203	RNaseP_bact_a links to Rfam database...	0.56	0.47	0.68	45	46599	24	1	20	3	51
ASE_00204	RNaseP_bact_b links to Rfam database...	0.62	0.53	0.72	59	67814	30	6	17	7	53
ASE_00205	RNaseP_arch links to Rfam database...	0.71	0.59	0.85	53	45994	12	0	9	3	37
ASE_00209	RNaseP_arch links to Rfam database...	0.77	0.65	0.92	57	43009	7	0	5	2	31
ASE_00210	RNaseP_arch links to Rfam database...	0.69	0.54	0.90	35	27222	5	0	4	1	30
ASE_00212	RNaseP_bact_a links to Rfam database...	0.67	0.54	0.82	80	93864	20	2	15	3	68
ASE_00213	RNaseP_arch links to Rfam database...	0.65	0.48	0.86	32	27224	6	0	5	1	34
ASE_00214	RNaseP_bact_a links to Rfam database...	0.74	0.63	0.87	65	56205	13	2	8	3	38
ASE_00215	RNaseP_bact_a links to Rfam database...	0.38	0.26	0.54	26	48468	23	2	20	1	73
ASE_00216	RNaseP_bact_a links to Rfam database...	0.69	0.59	0.81	48	39281	14	3	8	3	34
ASE_00217	RNaseP_bact_a links to Rfam database...	0.81	0.71	0.93	64	40401	8	2	3	3	26
ASE_00221	RNaseP_bact_a links to Rfam database...	0.78	0.69	0.89	81	64529	13	2	8	3	36
ASE_00222	RNaseP_arch links to Rfam database...	0.47	0.27	0.82	42	112050	10	0	9	1	115
ASE_00227	RNaseP_bact_a links to Rfam database...	0.28	0.21	0.38	28	78930	47	1	44	2	105
ASE_00228	RNaseP_bact_a links to Rfam database...	0.62	0.51	0.76	44	46913	18	2	12	4	42
ASE_00229	RNaseP_bact_a links to Rfam database...	0.72	0.62	0.84	54	42422	13	1	9	3	33
ASE_00231	RNaseP_bact_a links to Rfam database...	0.49	0.40	0.60	38	47832	27	5	20	2	58
ASE_00232	RNaseP_bact_a links to Rfam database...	0.63	0.57	0.71	48	38435	23	4	16	3	36
ASE_00234	RNaseP_bact_a links to Rfam database...	0.23	0.17	0.32	22	75398	48	3	43	2	107
ASE_00237	RNaseP_nuc links to Rfam database...	0.56	0.48	0.66	27	45712	30	2	12	16	29
ASE_00238	RNaseP_bact_a links to Rfam database...	0.54	0.39	0.76	44	64203	17	3	11	3	70
ASE_00240	RNaseP_bact_a links to Rfam database...	0.61	0.49	0.74	46	46603	19	1	15	3	47
ASE_00241	RNaseP_bact_a links to Rfam database...	0.80	0.72	0.89	63	43885	11	2	6	3	24
ASE_00242	RNaseP_bact_a links to Rfam database...	0.82	0.75	0.90	84	60982	12	2	7	3	28
ASE_00245	RNaseP_nuc links to Rfam database...	0.17	0.09	0.33	7	55257	20	3	11	6	71
ASE_00246	RNaseP_nuc links to Rfam database...	0.60	0.48	0.74	32	48162	25	0	11	14	35
ASE_00247	RNaseP_nuc links to Rfam database...	0.59	0.48	0.72	31	54242	28	0	12	16	33
ASE_00248	RNaseP_bact_a links to Rfam database...	0.81	0.72	0.92	82	62392	11	2	5	4	32
ASE_00250	RNaseP_bact_a links to Rfam database...	0.60	0.49	0.73	64	78915	25	4	20	1	67
ASE_00251	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	17757	12	1	8	3	43
ASE_00252	RNaseP_bact_a links to Rfam database...	0.47	0.35	0.64	58	115350	37	4	28	5	110
ASE_00254	RNaseP_bact_a links to Rfam database...	0.67	0.59	0.77	48	36794	17	1	13	3	34
ASE_00255	RNaseP_bact_a links to Rfam database...	0.61	0.50	0.74	65	74603	26	5	18	3	65
ASE_00257	RNaseP_bact_a links to Rfam database...	0.72	0.58	0.90	56	50978	9	4	2	3	41
ASE_00258	RNaseP_nuc links to Rfam database...	0.15	0.11	0.21	6	26768	24	4	18	2	48
ASE_00259	RNaseP_bact_a links to Rfam database...	0.59	0.48	0.73	58	73073	28	1	21	6	63
ASE_00263	RNaseP_bact_a links to Rfam database...	0.52	0.39	0.68	47	70431	25	3	19	3	73
ASE_00264	RNaseP_nuc links to Rfam database...	0.28	0.14	0.56	14	49116	15	0	11	4	86
ASE_00267	RNaseP_bact_a links to Rfam database...	0.75	0.65	0.86	57	45084	12	2	7	3	31
ASE_00270	RNaseP_bact_a links to Rfam database...	0.39	0.27	0.56	35	72328	32	0	27	5	93
ASE_00274	RNaseP_bact_a links to Rfam database...	0.60	0.48	0.77	49	55547	18	1	14	3	54
ASE_00277	RNaseP_bact_a links to Rfam database...	0.60	0.48	0.75	44	48146	19	1	14	4	47
ASE_00279	RNaseP_bact_a links to Rfam database...	0.78	0.65	0.93	66	53230	8	2	3	3	35
ASE_00280	RNaseP_bact_a links to Rfam database...	0.73	0.62	0.85	61	51931	14	1	10	3	37
ASE_00281	RNaseP_bact_a links to Rfam database...	0.79	0.68	0.91	60	44485	9	2	4	3	28
ASE_00282	RNaseP_bact_a links to Rfam database...	0.48	0.35	0.65	45	77746	26	3	21	2	82
ASE_00283	RNaseP_bact_a links to Rfam database...	0.68	0.56	0.82	60	61703	16	2	11	3	47
ASE_00284	RNaseP_bact_a links to Rfam database...	0.67	0.54	0.84	58	58242	14	2	9	3	50
ASE_00285	RNaseP_bact_a links to Rfam database...	0.51	0.40	0.64	49	68930	30	2	25	3	73
ASE_00286	RNaseP_bact_a links to Rfam database...	0.68	0.58	0.82	53	46600	15	1	11	3	39
ASE_00287	RNaseP_bact_a links to Rfam database...	0.67	0.54	0.84	56	54879	14	2	9	3	47
ASE_00288	RNaseP_bact_a links to Rfam database...	0.64	0.54	0.77	50	45991	18	2	13	3	43
ASE_00289	RNaseP_bact_a links to Rfam database...	0.54	0.42	0.70	66	100931	31	3	25	3	91
ASE_00292	RNaseP_bact_a links to Rfam database...	0.77	0.65	0.92	90	81712	11	3	5	3	48
ASE_00294	RNaseP_bact_a links to Rfam database...	0.67	0.51	0.87	88	114380	16	2	11	3	83
ASE_00295	RNaseP_bact_a links to Rfam database...	0.76	0.63	0.92	82	73831	10	2	5	3	49
ASE_00296	RNaseP_bact_a links to Rfam database...	0.68	0.54	0.87	78	91716	15	3	9	3	67
ASE_00297	RNaseP_bact_a links to Rfam database...	0.62	0.50	0.77	49	52911	18	0	15	3	49
ASE_00298	RNaseP_bact_a links to Rfam database...	0.55	0.42	0.72	47	67463	21	4	14	3	66
ASE_00299	RNaseP_bact_a links to Rfam database...	0.32	0.24	0.42	24	49398	34	1	32	1	76
ASE_00303	RNaseP_nuc links to Rfam database...	0.29	0.20	0.43	19	67852	30	7	18	5	76
ASE_00305	RNaseP_bact_b links to Rfam database...	0.73	0.68	0.77	58	54540	28	4	13	11	27
ASE_00313	RNaseP_nuc links to Rfam database...	0.39	0.20	0.75	18	62457	17	0	6	11	71
ASE_00316	RNaseP_nuc links to Rfam database...	0.27	0.17	0.41	17	107839	35	3	21	11	81
ASE_00318	RNaseP_bact_b links to Rfam database...	0.63	0.54	0.74	64	80113	37	6	17	14	54
ASE_00321	RNaseP_bact_b links to Rfam database...	0.74	0.69	0.79	61	54538	25	4	12	9	27
ASE_00327	RNaseP_nuc links to Rfam database...	0.28	0.18	0.43	16	57254	24	1	20	3	73
ASE_00328	RNaseP_bact_b links to Rfam database...	0.73	0.66	0.80	74	72679	31	5	13	13	38
ASE_00329	RNaseP_nuc links to Rfam database...	0.34	0.24	0.48	15	40724	21	11	5	5	48
ASE_00330	RNaseP_nuc links to Rfam database...	0.28	0.17	0.47	15	56248	24	0	17	7	75
ASE_00332	RNaseP_bact_a links to Rfam database...	0.74	0.63	0.88	87	81711	15	2	10	3	51
ASE_00335	RNaseP_bact_b links to Rfam database...	0.72	0.66	0.78	76	75369	33	6	15	12	40
ASE_00337	RNaseP_nuc links to Rfam database...	0.35	0.24	0.50	17	39306	24	2	15	7	54
ASE_00338	RNaseP_nuc links to Rfam database...	0.31	0.19	0.50	19	66392	21	2	17	2	79
ASE_00339	RNaseP_bact_a links to Rfam database...	0.44	0.34	0.58	40	80131	37	3	26	8	79
ASE_00340	RNaseP_bact_a links to Rfam database...	0.51	0.45	0.59	38	45992	31	3	23	5	47
ASE_00342	RNaseP_bact_a links to Rfam database...	0.81	0.72	0.91	83	62390	11	3	5	3	32
ASE_00343	RNaseP_bact_a links to Rfam database...	0.27	0.20	0.35	23	83371	49	4	38	7	90
ASE_00346	RNaseP_arch links to Rfam database...	0.61	0.49	0.75	48	48141	18	2	14	2	49
ASE_00353	RNaseP_bact_a links to Rfam database...	0.69	0.56	0.86	60	57900	13	1	9	3	47
ASE_00359	RNaseP_arch links to Rfam database...	0.37	0.26	0.51	21	42737	24	1	19	4	59
ASE_00360	RNaseP_arch links to Rfam database...	0.78	0.63	0.98	41	29361	2	0	1	1	24
ASE_00361	RNaseP_bact_a links to Rfam database...	0.66	0.46	0.94	59	75403	7	1	3	3	68
ASE_00362	RNaseP_bact_a links to Rfam database...	0.76	0.66	0.88	60	48137	12	2	6	4	31
ASE_00363	RNaseP_bact_a links to Rfam database...	0.77	0.63	0.94	59	51297	7	1	3	3	35
ASE_00364	RNaseP_bact_a links to Rfam database...	0.70	0.57	0.87	60	54216	12	1	8	3	45
ASE_00366	RNaseP_bact_a links to Rfam database...	0.58	0.48	0.70	47	58586	23	6	14	3	51
ASE_00367	RNaseP_bact_a links to Rfam database...	0.79	0.71	0.88	61	43002	11	2	6	3	25
ASE_00369	RNaseP_bact_a links to Rfam database...	0.71	0.58	0.86	62	55873	13	1	9	3	45
ASE_00370	RNaseP_bact_a links to Rfam database...	0.81	0.71	0.92	60	41840	8	1	4	3	24
ASE_00372	RNaseP_bact_a links to Rfam database...	0.57	0.45	0.71	45	51940	21	2	16	3	55
ASE_00374	RNaseP_bact_a links to Rfam database...	0.79	0.68	0.91	60	44784	9	2	4	3	28
ASE_00375	RNaseP_bact_a links to Rfam database...	0.50	0.39	0.64	43	60311	26	1	23	2	67
ASE_00376	RNaseP_bact_a links to Rfam database...	0.65	0.55	0.76	58	56877	21	2	16	3	47
ASE_00377	RNaseP_bact_a links to Rfam database...	0.72	0.58	0.89	62	57560	11	1	7	3	45
ASE_00379	RNaseP_bact_a links to Rfam database...	0.76	0.66	0.87	59	45988	12	2	7	3	30
ASE_00380	RNaseP_bact_a links to Rfam database...	0.51	0.40	0.65	40	54884	24	1	21	2	59
ASE_00382	RNaseP_bact_a links to Rfam database...	0.79	0.71	0.88	60	41837	11	2	6	3	24
ASE_00383	RNaseP_bact_a links to Rfam database...	0.78	0.67	0.91	70	54538	10	2	5	3	35
ASE_00384	RNaseP_bact_a links to Rfam database...	0.72	0.61	0.85	56	48450	13	1	9	3	36
ASE_00385	RNaseP_bact_a links to Rfam database...	0.55	0.47	0.64	38	41846	24	3	18	3	43
ASE_00386	RNaseP_bact_a links to Rfam database...	0.75	0.61	0.92	59	50339	8	1	4	3	37
ASE_00387	RNaseP_bact_a links to Rfam database...	0.60	0.50	0.71	52	55872	25	2	19	4	52
ASE_00388	RNaseP_bact_a links to Rfam database...	0.74	0.64	0.85	57	45686	14	2	8	4	32
ASE_00390	RNaseP_bact_a links to Rfam database...	0.78	0.68	0.89	58	42130	10	2	5	3	27
ASE_00393	RNaseP_bact_a links to Rfam database...	0.68	0.57	0.82	53	47830	15	1	11	3	40
ASE_00394	RNaseP_bact_a links to Rfam database...	0.73	0.62	0.87	58	46904	12	1	8	3	35
ASE_00395	RNaseP_bact_a links to Rfam database...	0.82	0.71	0.94	60	41552	7	1	3	3	24
ASE_00396	RNaseP_bact_a links to Rfam database...	0.75	0.66	0.85	55	41551	12	2	8	2	28
ASE_00397	RNaseP_bact_a links to Rfam database...	0.74	0.61	0.90	64	54544	10	2	5	3	41
ASE_00398	RNaseP_bact_a links to Rfam database...	0.65	0.52	0.82	54	55879	15	0	12	3	50
ASE_00400	RNaseP_bact_a links to Rfam database...	0.45	0.37	0.56	39	57900	33	2	29	2	67
ASE_00401	RNaseP_bact_a links to Rfam database...	0.55	0.40	0.76	51	76961	19	0	16	3	75
ASE_00402	RNaseP_bact_a links to Rfam database...	0.83	0.74	0.94	63	42419	7	1	3	3	22
ASE_00403	RNaseP_bact_a links to Rfam database...	0.71	0.57	0.90	61	55877	10	1	6	3	46
ASE_00404	RNaseP_bact_a links to Rfam database...	0.78	0.67	0.90	57	43008	10	2	4	4	28
ASE_00406	RNaseP_bact_a links to Rfam database...	0.79	0.68	0.93	64	48759	8	2	3	3	30
ASE_00411	RNaseP_bact_a links to Rfam database...	0.59	0.48	0.72	43	49395	20	2	15	3	46
ASE_00412	RNaseP_bact_a links to Rfam database...	0.55	0.42	0.72	44	58250	20	1	16	3	61
ASE_00413	RNaseP_bact_a links to Rfam database...	0.68	0.57	0.82	46	44495	14	1	9	4	35
ASE_00414	RNaseP_bact_a links to Rfam database...	0.19	0.16	0.24	15	46298	48	3	44	1	80
ASE_00415	RNaseP_bact_a links to Rfam database...	0.39	0.31	0.48	32	54880	36	3	31	2	71
ASE_00416	RNaseP_bact_a links to Rfam database...	0.69	0.60	0.80	76	77326	23	3	16	4	51
ASE_00417	RNaseP_arch links to Rfam database...	0.78	0.63	0.95	63	54549	5	0	3	2	37
ASE_00418	RNaseP_arch links to Rfam database...	0.71	0.55	0.91	41	38736	6	0	4	2	34
ASE_00419	RNaseP_bact_a links to Rfam database...	0.59	0.49	0.72	50	54877	20	3	16	1	53
ASE_00420	RNaseP_nuc links to Rfam database...	0.16	0.11	0.23	7	43335	29	5	18	6	56
ASE_00422	RNaseP_bact_a links to Rfam database...	0.58	0.49	0.69	46	46904	24	3	18	3	48
ASE_00423	RNaseP_bact_a links to Rfam database...	0.81	0.72	0.90	79	56865	13	3	6	4	30
ASE_00426	RNaseP_bact_a links to Rfam database...	0.42	0.36	0.48	39	60994	42	3	39	0	69
ASE_00427	RNaseP_nuc links to Rfam database...	0.56	0.41	0.76	19	40730	18	1	5	12	27
ASE_00428	RNaseP_bact_a links to Rfam database...	0.69	0.60	0.80	75	76542	22	5	14	3	50
ASE_00430	RNaseP_bact_a links to Rfam database...	0.55	0.45	0.68	44	46906	24	1	20	3	53
ASE_00431	RNaseP_bact_a links to Rfam database...	0.27	0.22	0.34	21	46299	40	8	32	0	74
ASE_00434	RNaseP_bact_b links to Rfam database...	0.62	0.55	0.71	60	68180	34	5	20	9	50
ASE_00437	RNaseP_bact_a links to Rfam database...	0.58	0.50	0.69	67	79304	33	2	28	3	68
ASE_00438	RNaseP_bact_a links to Rfam database...	0.41	0.32	0.54	37	65997	33	6	26	1	79
ASE_00441	RNaseP_bact_a links to Rfam database...	0.32	0.24	0.43	27	64198	40	4	32	4	85
ASE_00443	RNaseP_nuc links to Rfam database...	0.15	0.08	0.27	4	26781	18	0	11	7	46
ASE_00447	RNaseP_bact_a links to Rfam database...	0.80	0.72	0.90	83	60286	12	2	7	3	33
ASE_00448	RNaseP_bact_a links to Rfam database...	0.80	0.72	0.88	81	64169	14	2	9	3	31
ASE_00451	RNaseP_bact_a links to Rfam database...	0.77	0.66	0.88	83	70782	14	2	9	3	42
ASE_00454	RNaseP_nuc links to Rfam database...	0.05	0.03	0.09	2	43342	25	1	20	4	61
CRW_00013	Intron_gpI links to Rfam database...	0.33	0.21	0.53	24	103695	23	4	17	2	91
CRW_00016	Intron_gpI links to Rfam database...	0.31	0.19	0.51	23	77376	24	7	15	2	97
CRW_00610	Intron_gpI links to Rfam database...	0.16	0.09	0.32	7	36293	15	1	14	0	74
CRW_00613	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	34956	24	7	17	0	78
CRW_00614	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	121749	22	4	18	0	57
CRW_00618	Intron_gpI links to Rfam database...	0.18	0.10	0.32	6	56261	13	1	12	0	55
CRW_00633	Intron_gpI links to Rfam database...	0.45	0.27	0.74	29	63507	14	0	10	4	77
CRW_00634	Intron_gpI links to Rfam database...	0.47	0.30	0.74	28	64582	18	0	10	8	66
CRW_00670	Intron_gpI links to Rfam database...	0.47	0.26	0.86	31	70089	7	0	5	2	89
CRW_00671	Intron_gpI links to Rfam database...	0.56	0.37	0.84	43	62784	10	0	8	2	74
CRW_00672	Intron_gpI links to Rfam database...	0.43	0.28	0.67	31	72344	17	0	15	2	80
CRW_00674	Intron_gpI links to Rfam database...	0.22	0.14	0.37	17	83390	29	5	24	0	107
CRW_00676	Intron_gpI links to Rfam database...	0.03	0.02	0.07	2	93500	31	4	22	5	113
CRW_00692	Intron_gpI links to Rfam database...	0.03	0.01	0.06	1	68619	22	0	15	7	89
CRW_01484	5S_rRNA links to Rfam database...	0.75	0.69	0.82	27	7470	10	0	6	4	12
CRW_01499	5S_rRNA links to Rfam database...	0.66	0.61	0.71	25	7966	12	0	10	2	16
CRW_01507	5S_rRNA links to Rfam database...	0.78	0.73	0.83	30	7467	9	0	6	3	11
CRW_01535	5S_rRNA links to Rfam database...	0.89	0.89	0.89	33	7103	8	0	4	4	4
CRW_01590	5S_rRNA links to Rfam database...	0.92	0.92	0.92	34	7103	7	0	3	4	3
CRW_01603	5S_rRNA links to Rfam database...	0.89	0.89	0.89	33	7103	8	0	4	4	4
PDB_00005	Tymo_tRNA-like links to Rfam database...	0.59	0.36	1.00	5	941	0	0	0	0	9
PDB_00012	mir-TAR links to Rfam database...	1.00	1.00	1.00	7	399	3	0	0	3	0
PDB_00213	Gammaretro_CES links to Rfam database...	0.81	0.73	0.91	30	5017	3	0	3	0	11
PDB_00392	tRNA links to Rfam database...	0.90	0.90	0.90	19	2829	2	0	2	0	2
PDB_00553	mir-TAR links to Rfam database...	0.90	0.82	1.00	9	456	0	0	0	0	2
PDB_00716	HDV_ribozyme links to Rfam database...	-0.01	0.00	0.00	0	2681	21	1	19	1	23
PDB_00741	Entero_5_CRE links to Rfam database...	0.87	0.76	1.00	13	690	0	0	0	0	4
PDB_00810	s2m links to Rfam database...	0.77	0.65	0.92	11	1069	2	0	1	1	6
PDB_00827	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	27011	17	1	16	0	81
PDB_00828	Purine links to Rfam database...	0.82	0.67	1.00	18	2467	0	0	0	0	9
PDB_00829	Purine links to Rfam database...	0.86	0.75	1.00	18	2260	0	0	0	0	6
PDB_00876	HIV_FE links to Rfam database...	0.57	0.55	0.61	11	972	7	0	7	0	9
PDB_00919	RNaseP_bact_a links to Rfam database...	0.27	0.21	0.35	22	44191	40	3	37	0	81
PDB_01001	tRNA links to Rfam database...	0.61	0.56	0.67	10	2130	6	3	2	1	8
PDB_01020	Purine links to Rfam database...	0.83	0.70	1.00	16	2262	0	0	0	0	7
PDB_01050	UnaL2 links to Rfam database...	0.78	0.62	1.00	8	622	2	0	0	2	5
PDB_01051	Telomerase-cil links to Rfam database...	0.64	0.54	0.78	7	894	5	0	2	3	6
PDB_01073	SAM links to Rfam database...	0.81	0.74	0.89	25	4343	4	1	2	1	9
PDB_01092	glmS links to Rfam database...	0.70	0.63	0.79	33	10111	12	2	7	3	19
PDB_01114	TPP links to Rfam database...	0.53	0.48	0.59	13	2828	11	0	9	2	14
PDB_01152	HIV_FS2 links to Rfam database...	0.85	0.79	0.92	11	549	1	0	1	0	3
PDB_01236	ykoK links to Rfam database...	0.87	0.81	0.94	44	11581	8	0	3	5	10
RFA_00389	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	1	0	0	1	1
RFA_00390	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	1	0	0	1	1
RFA_00391	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	1	0	0	1	1
RFA_00396	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	1	0	0	1	1
RFA_00402	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	1	0	0	1	1
RFA_00409	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	1	0	0	1	1
RFA_00416	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1471	1	0	0	1	1
RFA_00425	Hammerhead_3 links to Rfam database...	0.93	0.87	1.00	13	1640	1	0	0	1	2
RFA_00427	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1471	1	0	0	1	1
RFA_00433	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	1	0	0	1	0
RFA_00434	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	1	0	0	1	1
RFA_00436	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	1	0	0	1	1
RFA_00440	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1471	1	0	0	1	1
RFA_00442	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	1	0	0	1	1
RFA_00444	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1526	2	0	0	2	1
RFA_00446	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1471	1	0	0	1	1
RFA_00449	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1471	1	0	0	1	1
RFA_00582	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	5980	19	0	0	19	0
RFA_00583	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4935	19	0	0	19	0
RFA_00584	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	2911	11	0	0	11	0
RFA_00585	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4836	19	0	0	19	0
RFA_00586	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	3901	16	0	0	16	0
RFA_00587	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4836	19	0	0	19	0
RFA_00588	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4545	15	0	0	15	0
RFA_00589	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4356	17	0	0	17	0
RFA_00594	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	2760	11	0	0	11	0
RFA_00596	Y_RNA links to Rfam database...	0.93	0.87	1.00	13	5982	19	0	0	19	2
RFA_00597	Telomerase-vert links to Rfam database...	0.71	0.66	0.76	72	97808	43	8	15	20	37
RFA_00598	Telomerase-vert links to Rfam database...	0.72	0.68	0.77	69	84576	40	5	16	19	32
RFA_00599	Telomerase-vert links to Rfam database...	0.54	0.51	0.57	57	101375	62	5	38	19	54
RFA_00600	Telomerase-vert links to Rfam database...	0.53	0.49	0.57	49	120209	62	10	27	25	51
RFA_00601	Telomerase-vert links to Rfam database...	0.74	0.73	0.75	83	99124	49	4	24	21	31
RFA_00602	Telomerase-vert links to Rfam database...	0.69	0.68	0.69	79	101361	50	5	30	15	37
RFA_00603	Telomerase-cil links to Rfam database...	0.74	0.74	0.74	26	13495	17	3	6	8	9
RFA_00604	Telomerase-cil links to Rfam database...	0.72	0.63	0.81	22	13503	13	3	2	8	13
RFA_00605	Telomerase-cil links to Rfam database...	0.26	0.23	0.30	8	15198	22	5	14	3	27
RFA_00606	Telomerase-cil links to Rfam database...	0.53	0.51	0.56	20	21285	25	4	12	9	19
RFA_00607	Telomerase-cil links to Rfam database...	0.77	0.72	0.81	26	17734	16	1	5	10	10
RFA_00609	Telomerase-cil links to Rfam database...	0.67	0.65	0.69	24	17920	19	2	9	8	13
RFA_00610	Telomerase-cil links to Rfam database...	0.76	0.76	0.76	28	17168	19	1	8	10	9
RFA_00611	Telomerase-cil links to Rfam database...	0.75	0.74	0.76	26	13007	13	4	4	5	9
RFA_00613	Telomerase-cil links to Rfam database...	0.76	0.71	0.81	25	12849	11	4	2	5	10
RFA_00615	Telomerase-cil links to Rfam database...	0.75	0.74	0.76	26	13332	15	4	4	7	9
RFA_00620	Telomerase-cil links to Rfam database...	0.20	0.18	0.23	7	21915	33	7	16	10	32
RFA_00621	RNase_MRP links to Rfam database...	0.34	0.18	0.64	14	46338	14	0	8	6	62
RFA_00623	RNase_MRP links to Rfam database...	0.42	0.23	0.75	18	43932	10	1	5	4	60
RFA_00624	RNase_MRP links to Rfam database...	0.27	0.18	0.39	11	30107	20	0	17	3	50
RFA_00626	rne5 links to Rfam database...	0.89	0.87	0.92	76	56533	29	2	5	22	11
RFA_00627	rne5 links to Rfam database...	0.83	0.79	0.87	69	56874	36	1	9	26	18
RFA_00628	rne5 links to Rfam database...	0.85	0.81	0.89	70	57212	38	2	7	29	16
RFA_00630	rne5 links to Rfam database...	0.82	0.78	0.86	68	56874	33	2	9	22	19
RFA_00632	HDV_ribozyme links to Rfam database...	0.25	0.25	0.27	7	4069	19	1	18	0	21
RFA_00636	HDV_ribozyme links to Rfam database...	0.35	0.36	0.36	10	3977	18	2	16	0	18
RFA_00639	7SK links to Rfam database...	0.31	0.31	0.31	27	54527	69	10	51	8	60
RFA_00642	Vimentin3 links to Rfam database...	0.56	0.50	0.64	9	2912	7	0	5	2	9
RFA_00643	Vimentin3 links to Rfam database...	0.69	0.61	0.79	11	2197	5	0	3	2	7
RFA_00644	Vimentin3 links to Rfam database...	0.69	0.61	0.79	11	2687	5	0	3	2	7
RFA_00645	Vimentin3 links to Rfam database...	0.30	0.28	0.33	5	2400	11	0	10	1	13
RFA_00649	Vimentin3 links to Rfam database...	0.73	0.67	0.80	12	2130	5	0	3	2	6
RFA_00651	Vimentin3 links to Rfam database...	0.73	0.67	0.80	12	2065	5	0	3	2	6
RFA_00653	Vimentin3 links to Rfam database...	0.67	0.61	0.73	11	2130	6	0	4	2	7
RFA_00654	Vimentin3 links to Rfam database...	0.73	0.67	0.80	12	2400	5	0	3	2	6
RFA_00658	Hammerhead_1 links to Rfam database...	0.61	0.57	0.67	8	1116	5	0	4	1	6
RFA_00659	Hammerhead_1 links to Rfam database...	0.46	0.43	0.50	6	1116	7	0	6	1	8
RFA_00664	Hammerhead_1 links to Rfam database...	0.69	0.64	0.75	9	978	4	0	3	1	5
RFA_00667	Hammerhead_1 links to Rfam database...	0.69	0.64	0.75	9	978	4	0	3	1	5
RFA_00668	Hammerhead_1 links to Rfam database...	0.69	0.64	0.75	9	978	4	0	3	1	5
RFA_00672	Hammerhead_1 links to Rfam database...	0.72	0.69	0.75	9	891	4	0	3	1	4
RFA_00673	Hammerhead_1 links to Rfam database...	0.61	0.57	0.67	8	1116	5	0	4	1	6
RFA_00674	Hammerhead_1 links to Rfam database...	0.69	0.64	0.75	9	1116	4	0	3	1	5
RFA_00675	Hammerhead_1 links to Rfam database...	0.69	0.64	0.75	9	978	4	0	3	1	5
RFA_00677	Hammerhead_1 links to Rfam database...	0.69	0.64	0.75	9	978	4	0	3	1	5
RFA_00678	Hammerhead_1 links to Rfam database...	0.66	0.64	0.69	9	933	5	0	4	1	5
RFA_00680	Hammerhead_1 links to Rfam database...	0.61	0.57	0.67	8	1116	5	0	4	1	6
RFA_00684	Hammerhead_1 links to Rfam database...	0.66	0.64	0.69	9	977	5	0	4	1	5
RFA_00685	Hammerhead_1 links to Rfam database...	0.69	0.64	0.75	9	978	4	0	3	1	5
RFA_00695	Hammerhead_1 links to Rfam database...	0.62	0.57	0.67	8	7009	22	1	3	18	6
RFA_00703	Hammerhead_1 links to Rfam database...	0.62	0.57	0.67	8	4266	8	1	3	4	6
RFA_00704	Hammerhead_1 links to Rfam database...	0.69	0.64	0.75	9	978	4	0	3	1	5
RFA_00705	Hammerhead_1 links to Rfam database...	0.66	0.64	0.69	9	1022	5	0	4	1	5
RFA_00706	Hammerhead_1 links to Rfam database...	0.69	0.64	0.75	9	1023	4	0	3	1	5
RFA_00707	Hammerhead_1 links to Rfam database...	0.69	0.64	0.75	9	1023	4	0	3	1	5
RFA_00708	Hammerhead_1 links to Rfam database...	0.64	0.57	0.73	8	1024	4	0	3	1	6
RFA_00709	Hammerhead_1 links to Rfam database...	0.69	0.64	0.75	9	978	4	0	3	1	5
RFA_00710	Hammerhead_1 links to Rfam database...	0.69	0.64	0.75	9	978	4	0	3	1	5
RFA_00711	Hammerhead_1 links to Rfam database...	0.69	0.64	0.75	9	1023	4	0	3	1	5
RFA_00715	Hammerhead_1 links to Rfam database...	0.56	0.50	0.64	7	935	5	0	4	1	7
RFA_00716	Hammerhead_1 links to Rfam database...	0.48	0.43	0.55	6	935	6	0	5	1	8
RFA_00717	Hammerhead_1 links to Rfam database...	0.69	0.64	0.75	9	891	3	0	3	0	5
RFA_00730	s2m links to Rfam database...	1.00	1.00	1.00	12	891	1	0	0	1	0
RFA_00731	s2m links to Rfam database...	1.00	1.00	1.00	12	891	1	0	0	1	0
RFA_00733	s2m links to Rfam database...	1.00	1.00	1.00	12	891	1	0	0	1	0
RFA_00734	s2m links to Rfam database...	1.00	1.00	1.00	12	891	1	0	0	1	0
RFA_00736	s2m links to Rfam database...	1.00	1.00	1.00	12	891	1	0	0	1	0
RFA_00737	s2m links to Rfam database...	1.00	1.00	1.00	12	891	1	0	0	1	0
RFA_00745	s2m links to Rfam database...	1.00	1.00	1.00	12	934	1	0	0	1	0
RFA_00749	s2m links to Rfam database...	1.00	1.00	1.00	12	891	1	0	0	1	0
RFA_00758	s2m links to Rfam database...	1.00	1.00	1.00	12	891	1	0	0	1	0
RFA_00762	s2m links to Rfam database...	1.00	1.00	1.00	12	891	1	0	0	1	0
RFA_00763	s2m links to Rfam database...	1.00	1.00	1.00	12	891	1	0	0	1	0
RFA_00764	s2m links to Rfam database...	1.00	1.00	1.00	12	891	1	0	0	1	0
RFA_00765	s2m links to Rfam database...	1.00	1.00	1.00	12	891	1	0	0	1	0
RFA_00767	Corona_pk3 links to Rfam database...	0.59	0.56	0.63	10	1875	6	2	4	0	8
RFA_00768	Corona_pk3 links to Rfam database...	0.59	0.56	0.63	10	1875	6	2	4	0	8
RFA_00769	Corona_pk3 links to Rfam database...	0.55	0.56	0.56	10	1935	8	3	5	0	8
RFA_00770	Corona_pk3 links to Rfam database...	0.57	0.56	0.59	10	1999	7	2	5	0	8
RFA_00773	Corona_pk3 links to Rfam database...	0.55	0.56	0.56	10	1935	8	3	5	0	8
RFA_00779	Corona_pk3 links to Rfam database...	0.57	0.56	0.59	10	1936	7	2	5	0	8
RFA_00781	Gammaretro_CES links to Rfam database...	0.92	0.91	0.94	29	5019	3	2	0	1	3
RFA_00786	Gammaretro_CES links to Rfam database...	0.92	0.91	0.94	29	5019	3	2	0	1	3
RFA_00791	Gammaretro_CES links to Rfam database...	0.87	0.88	0.88	28	5119	5	2	2	1	4
RFA_00792	Gammaretro_CES links to Rfam database...	0.92	0.91	0.94	29	5019	3	2	0	1	3
RFA_00801	Gammaretro_CES links to Rfam database...	0.91	0.91	0.91	29	5018	4	2	1	1	3
RFA_00808	RydC links to Rfam database...	-0.01	0.00	0.00	0	2000	19	2	14	3	16
RFA_00809	RydC links to Rfam database...	0.30	0.31	0.29	5	2128	12	1	11	0	11
RFA_00814	R2_retro_el links to Rfam database...	0.95	0.93	0.97	38	25161	22	0	1	21	3
RFA_00815	R2_retro_el links to Rfam database...	0.96	0.93	1.00	38	24493	15	0	0	15	3
RFA_00816	R2_retro_el links to Rfam database...	0.96	0.93	1.00	38	23182	15	0	0	15	3
RFA_00817	R2_retro_el links to Rfam database...	0.94	0.88	1.00	36	21909	12	0	0	12	5
RFA_00818	R2_retro_el links to Rfam database...	0.64	0.68	0.61	28	20255	30	11	7	12	13
RFA_00819	R2_retro_el links to Rfam database...	0.94	0.90	0.97	37	27928	26	0	1	25	4
SPR_00020	tRNA links to Rfam database...	0.97	0.95	1.00	19	2682	1	0	0	1	1
SPR_00023	tRNA links to Rfam database...	0.77	0.71	0.83	15	2832	4	0	3	1	6
SPR_00064	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00111	tRNA links to Rfam database...	0.98	0.95	1.00	20	2681	0	0	0	0	1
SPR_00113	tRNA links to Rfam database...	0.31	0.25	0.38	5	2762	9	0	8	1	15
SPR_00137	tRNA links to Rfam database...	0.82	0.76	0.89	16	2908	4	0	2	2	5
SPR_00273	tRNA links to Rfam database...	0.58	0.57	0.60	12	2830	8	0	8	0	9
SPR_00277	tRNA links to Rfam database...	0.98	0.95	1.00	20	2906	0	0	0	0	1
SPR_00279	tRNA links to Rfam database...	0.95	0.90	1.00	19	2907	1	0	0	1	2
SPR_00314	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00394	tRNA links to Rfam database...	0.73	0.71	0.75	15	3635	5	0	5	0	6
SPR_00402	tRNA links to Rfam database...	0.98	0.95	1.00	20	2536	0	0	0	0	1
SPR_00434	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00452	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00595	tRNA links to Rfam database...	0.98	0.95	1.00	20	2755	0	0	0	0	1
SPR_00721	tRNA links to Rfam database...	0.98	0.95	1.00	20	2906	0	0	0	0	1
SPR_00816	tRNA links to Rfam database...	0.52	0.50	0.56	10	3468	9	0	8	1	10
SPR_00867	tRNA links to Rfam database...	0.98	0.95	1.00	20	2906	0	0	0	0	1
SPR_00912	tRNA links to Rfam database...	1.00	1.00	1.00	21	2982	0	0	0	0	0
SPR_01157	tRNA links to Rfam database...	0.98	0.95	1.00	20	2755	0	0	0	0	1
SRP_00001	Bacteria_large_SRP links to Rfam database...	0.77	0.70	0.85	28	6753	6	1	4	1	12
SRP_00002	Metazoa_SRP links to Rfam database...	0.84	0.82	0.87	84	45053	19	0	13	6	18
SRP_00006	Metazoa_SRP links to Rfam database...	0.84	0.82	0.86	83	45657	22	0	13	9	18
SRP_00008	Bacteria_small_SRP links to Rfam database...	0.55	0.52	0.59	13	2904	10	0	9	1	12
SRP_00009	Plant_SRP links to Rfam database...	0.82	0.80	0.83	82	46566	28	0	17	11	20
SRP_00011	Plant_SRP links to Rfam database...	0.77	0.77	0.78	80	46257	31	0	23	8	24
SRP_00012	Plant_SRP links to Rfam database...	0.86	0.84	0.89	85	46264	26	0	11	15	16
SRP_00015	Plant_SRP links to Rfam database...	0.87	0.85	0.89	84	46266	25	0	10	15	15
SRP_00016	Archaea_SRP links to Rfam database...	0.92	0.89	0.95	97	47793	15	0	5	10	12
SRP_00018	Fungi_SRP links to Rfam database...	0.84	0.74	0.95	60	38440	16	0	3	13	21
SRP_00019	Fungi_SRP links to Rfam database...	0.76	0.65	0.88	59	35979	18	0	8	10	32
SRP_00020	Bacteria_small_SRP links to Rfam database...	0.89	0.91	0.88	30	5531	5	1	3	1	3
SRP_00024	Bacteria_large_SRP links to Rfam database...	0.81	0.75	0.88	65	37601	13	0	9	4	22
SRP_00026	Bacteria_large_SRP links to Rfam database...	0.80	0.73	0.88	64	36783	15	0	9	6	24
SRP_00027	Bacteria_large_SRP links to Rfam database...	0.83	0.76	0.90	66	37055	14	0	7	7	21
SRP_00030	Bacteria_large_SRP links to Rfam database...	0.84	0.78	0.91	69	36780	11	0	7	4	19
SRP_00031	Bacteria_large_SRP links to Rfam database...	0.84	0.78	0.91	69	36239	11	0	7	4	20
SRP_00037	Bacteria_large_SRP links to Rfam database...	0.84	0.77	0.92	67	36512	13	0	6	7	20
SRP_00038	Bacteria_small_SRP links to Rfam database...	0.73	0.70	0.77	23	5020	9	0	7	2	10
SRP_00040	Bacteria_small_SRP links to Rfam database...	0.53	0.52	0.55	16	5536	16	1	12	3	15
SRP_00042	Bacteria_small_SRP links to Rfam database...	0.54	0.52	0.57	13	3982	13	1	9	3	12
SRP_00043	Bacteria_small_SRP links to Rfam database...	0.44	0.41	0.48	12	5025	14	2	11	1	17
SRP_00044	Bacteria_small_SRP links to Rfam database...	0.82	0.81	0.84	26	6074	9	1	4	4	6
SRP_00046	Bacteria_small_SRP links to Rfam database...	0.95	0.94	0.97	30	4722	3	0	1	2	2
SRP_00050	Metazoa_SRP links to Rfam database...	0.92	0.91	0.94	90	44754	20	0	6	14	9
SRP_00051	Bacteria_small_SRP links to Rfam database...	0.76	0.73	0.79	22	5432	10	0	6	4	8
SRP_00053	Metazoa_SRP links to Rfam database...	0.89	0.87	0.90	82	45059	25	0	9	16	12
SRP_00054	Bacteria_small_SRP links to Rfam database...	0.76	0.75	0.77	24	5534	9	0	7	2	8
SRP_00056	Bacteria_small_SRP links to Rfam database...	0.73	0.65	0.83	24	6412	8	1	4	3	13
SRP_00057	Bacteria_small_SRP links to Rfam database...	0.72	0.66	0.79	23	6299	10	1	5	4	12
SRP_00058	Bacteria_small_SRP links to Rfam database...	0.83	0.82	0.85	28	5745	7	1	4	2	6
SRP_00060	Metazoa_SRP links to Rfam database...	0.93	0.91	0.95	91	44455	15	0	5	10	9
SRP_00061	Metazoa_SRP links to Rfam database...	0.93	0.91	0.95	91	44754	15	0	5	10	9
SRP_00066	Metazoa_SRP links to Rfam database...	0.85	0.83	0.86	83	45355	25	0	13	12	17
SRP_00067	Bacteria_small_SRP links to Rfam database...	0.80	0.71	0.90	27	5748	5	1	2	2	11
SRP_00069	Fungi_SRP links to Rfam database...	0.66	0.58	0.77	49	34389	25	3	12	10	36
SRP_00072	Bacteria_small_SRP links to Rfam database...	0.46	0.41	0.52	12	6305	13	0	11	2	17
SRP_00073	Fungi_SRP links to Rfam database...	0.66	0.61	0.72	43	39000	31	4	13	14	28
SRP_00074	Bacteria_small_SRP links to Rfam database...	0.42	0.41	0.43	12	6527	21	2	14	5	17
SRP_00075	Bacteria_small_SRP links to Rfam database...	0.86	0.82	0.90	28	5534	5	0	3	2	6
SRP_00077	Bacteria_small_SRP links to Rfam database...	0.69	0.62	0.77	23	6640	10	0	7	3	14
SRP_00079	Plant_SRP links to Rfam database...	0.68	0.66	0.71	58	41823	39	0	24	15	30
SRP_00081	Bacteria_small_SRP links to Rfam database...	0.51	0.52	0.50	16	5533	17	2	14	1	15
SRP_00084	Bacteria_small_SRP links to Rfam database...	0.93	0.94	0.91	32	5425	3	1	2	0	2
SRP_00085	Plant_SRP links to Rfam database...	0.81	0.79	0.82	80	45354	30	0	17	13	21
SRP_00086	Metazoa_SRP links to Rfam database...	0.91	0.90	0.93	90	44156	17	0	7	10	10
SRP_00087	Fungi_SRP links to Rfam database...	0.32	0.34	0.31	20	37336	53	16	29	8	38
SRP_00088	Bacteria_large_SRP links to Rfam database...	0.77	0.69	0.86	61	34120	13	1	9	3	28
SRP_00089	Bacteria_large_SRP links to Rfam database...	0.80	0.73	0.88	66	35703	13	1	8	4	24
SRP_00090	Bacteria_large_SRP links to Rfam database...	0.78	0.71	0.86	64	35437	14	1	9	4	26
SRP_00091	Fungi_SRP links to Rfam database...	0.59	0.48	0.73	46	52912	29	3	14	12	49
SRP_00094	Bacteria_small_SRP links to Rfam database...	0.62	0.58	0.67	14	4074	12	1	6	5	10
SRP_00095	Bacteria_small_SRP links to Rfam database...	0.65	0.60	0.71	15	3984	10	1	5	4	10
SRP_00098	Bacteria_small_SRP links to Rfam database...	0.80	0.73	0.87	27	6410	6	1	3	2	10
SRP_00099	Plant_SRP links to Rfam database...	0.55	0.56	0.55	53	44753	48	3	41	4	42
SRP_00102	Metazoa_SRP links to Rfam database...	0.90	0.88	0.93	89	44455	16	0	7	9	12
SRP_00103	Metazoa_SRP links to Rfam database...	0.91	0.89	0.92	91	45352	17	0	8	9	11
SRP_00104	Fungi_SRP links to Rfam database...	0.53	0.49	0.57	34	34393	37	5	21	11	35
SRP_00105	Bacteria_small_SRP links to Rfam database...	0.80	0.74	0.86	25	5536	8	0	4	4	9
SRP_00106	Bacteria_large_SRP links to Rfam database...	0.67	0.72	0.62	18	5224	14	4	7	3	7
SRP_00107	Bacteria_small_SRP links to Rfam database...	0.26	0.26	0.26	5	3636	16	2	12	2	14
SRP_00117	Metazoa_SRP links to Rfam database...	0.81	0.78	0.83	80	45355	24	0	16	8	22
SRP_00121	Bacteria_small_SRP links to Rfam database...	0.60	0.64	0.57	16	4250	13	4	8	1	9
SRP_00123	Metazoa_SRP links to Rfam database...	0.78	0.76	0.81	69	36500	24	3	13	8	22
SRP_00124	Metazoa_SRP links to Rfam database...	0.60	0.55	0.64	47	37055	30	6	20	4	38
SRP_00127	Fungi_SRP links to Rfam database...	0.55	0.42	0.71	50	72320	24	3	17	4	69
SRP_00128	Bacteria_small_SRP links to Rfam database...	0.82	0.78	0.88	28	6754	7	1	3	3	8
SRP_00130	Archaea_SRP links to Rfam database...	0.74	0.70	0.77	68	49682	35	1	19	15	29
SRP_00132	Bacteria_small_SRP links to Rfam database...	0.63	0.62	0.64	18	4823	14	0	10	4	11
SRP_00134	Bacteria_large_SRP links to Rfam database...	0.65	0.69	0.63	20	5963	14	2	10	2	9
SRP_00136	Fungi_SRP links to Rfam database...	0.57	0.54	0.61	38	44191	37	9	15	13	33
SRP_00137	Bacteria_small_SRP links to Rfam database...	0.60	0.64	0.57	16	4158	13	3	9	1	9
SRP_00141	Bacteria_small_SRP links to Rfam database...	0.81	0.73	0.91	30	6295	5	1	2	2	11
SRP_00142	Archaea_SRP links to Rfam database...	0.89	0.87	0.90	81	45966	25	0	9	16	12
SRP_00143	Archaea_SRP links to Rfam database...	0.84	0.83	0.85	84	49671	26	0	15	11	17
SRP_00144	Archaea_SRP links to Rfam database...	0.87	0.86	0.87	81	46572	28	0	12	16	13
SRP_00145	Bacteria_small_SRP links to Rfam database...	0.74	0.68	0.82	27	6295	8	1	5	2	13
SRP_00146	Bacteria_small_SRP links to Rfam database...	0.82	0.75	0.90	27	5223	5	1	2	2	9
SRP_00148	Fungi_SRP links to Rfam database...	0.60	0.51	0.72	44	50025	27	0	17	10	43
SRP_00152	Plant_SRP links to Rfam database...	0.88	0.86	0.89	89	45653	21	0	11	10	14
SRP_00153	Plant_SRP links to Rfam database...	0.86	0.85	0.88	91	46867	22	0	13	9	16
SRP_00157	Fungi_SRP links to Rfam database...	0.56	0.53	0.60	38	44190	39	5	20	14	34
SRP_00158	Fungi_SRP links to Rfam database...	0.25	0.18	0.35	21	124191	44	8	31	5	94
SRP_00160	Fungi_SRP links to Rfam database...	0.42	0.32	0.54	42	86242	46	0	36	10	88
SRP_00161	Bacteria_small_SRP links to Rfam database...	0.84	0.86	0.83	19	2827	6	0	4	2	3
SRP_00162	Bacteria_small_SRP links to Rfam database...	0.89	0.91	0.88	21	2902	5	0	3	2	2
SRP_00163	Bacteria_small_SRP links to Rfam database...	0.87	0.88	0.85	23	3459	6	0	4	2	3
SRP_00164	Bacteria_small_SRP links to Rfam database...	0.75	0.66	0.85	23	6876	7	1	3	3	12
SRP_00170	Bacteria_small_SRP links to Rfam database...	0.51	0.48	0.55	12	4073	14	1	9	4	13
SRP_00171	Metazoa_SRP links to Rfam database...	0.83	0.83	0.84	73	45364	36	0	14	22	15
SRP_00173	Bacteria_large_SRP links to Rfam database...	0.78	0.70	0.86	63	38153	15	0	10	5	27
SRP_00174	Bacteria_large_SRP links to Rfam database...	0.77	0.71	0.84	61	38708	15	0	12	3	25
SRP_00175	Fungi_SRP links to Rfam database...	0.58	0.49	0.69	41	44492	33	2	16	15	43
SRP_00178	Plant_SRP links to Rfam database...	0.89	0.88	0.89	90	45652	23	0	11	12	12
SRP_00179	Plant_SRP links to Rfam database...	0.87	0.86	0.88	90	45954	23	0	12	11	15
SRP_00181	Plant_SRP links to Rfam database...	0.80	0.79	0.80	81	45955	30	0	20	10	21
SRP_00182	Plant_SRP links to Rfam database...	0.84	0.83	0.85	84	45957	25	0	15	10	17
SRP_00184	Plant_SRP links to Rfam database...	0.78	0.77	0.79	77	45958	34	0	21	13	23
SRP_00188	Plant_SRP links to Rfam database...	0.54	0.51	0.58	40	31056	32	7	22	3	39
SRP_00194	Bacteria_small_SRP links to Rfam database...	0.74	0.76	0.73	16	3218	9	0	6	3	5
SRP_00197	Archaea_SRP links to Rfam database...	0.92	0.90	0.94	91	49358	24	0	6	18	10
SRP_00198	Archaea_SRP links to Rfam database...	0.90	0.87	0.92	90	50942	24	0	8	16	13
SRP_00199	Archaea_SRP links to Rfam database...	0.89	0.88	0.91	92	50939	21	0	9	12	13
SRP_00200	Bacteria_small_SRP links to Rfam database...	0.72	0.67	0.77	24	6872	10	1	6	3	12
SRP_00201	Archaea_SRP links to Rfam database...	0.94	0.93	0.96	103	47788	11	0	4	7	8
SRP_00202	Archaea_SRP links to Rfam database...	0.89	0.85	0.93	100	54178	16	0	7	9	17
SRP_00203	Archaea_SRP links to Rfam database...	0.83	0.83	0.83	87	48723	25	0	18	7	18
SRP_00204	Archaea_SRP links to Rfam database...	0.87	0.85	0.88	87	49042	25	0	12	13	15
SRP_00206	Archaea_SRP links to Rfam database...	0.94	0.93	0.96	100	47791	14	0	4	10	8
SRP_00208	Archaea_SRP links to Rfam database...	0.91	0.88	0.95	89	46571	20	0	5	15	12
SRP_00209	Bacteria_small_SRP links to Rfam database...	0.43	0.41	0.46	11	4632	15	1	12	2	16
SRP_00213	Bacteria_small_SRP links to Rfam database...	0.66	0.56	0.78	14	4168	9	1	3	5	11
SRP_00215	Bacteria_small_SRP links to Rfam database...	0.88	0.88	0.88	22	3215	4	0	3	1	3
SRP_00216	Bacteria_small_SRP links to Rfam database...	0.76	0.70	0.83	19	3380	6	1	3	2	8
SRP_00217	Bacteria_small_SRP links to Rfam database...	0.74	0.71	0.77	17	3299	7	0	5	2	7
SRP_00219	Bacteria_small_SRP links to Rfam database...	0.82	0.83	0.83	19	3298	7	0	4	3	4
SRP_00222	Bacteria_small_SRP links to Rfam database...	0.83	0.76	0.90	19	3060	4	1	1	2	6
SRP_00227	Bacteria_small_SRP links to Rfam database...	0.81	0.81	0.81	25	5120	7	1	5	1	6
SRP_00228	Metazoa_SRP links to Rfam database...	0.89	0.87	0.90	83	45359	23	0	9	14	12
SRP_00229	Bacteria_small_SRP links to Rfam database...	0.40	0.41	0.41	11	5226	20	0	16	4	16
SRP_00230	Fungi_SRP links to Rfam database...	0.68	0.57	0.81	51	39558	23	3	9	11	39
SRP_00231	Bacteria_small_SRP links to Rfam database...	0.90	0.91	0.89	31	5425	4	1	3	0	3
SRP_00233	Bacteria_small_SRP links to Rfam database...	0.87	0.82	0.93	27	5122	3	0	2	1	6
SRP_00234	Bacteria_large_SRP links to Rfam database...	0.84	0.76	0.93	65	36245	14	0	5	9	21
SRP_00239	Plant_SRP links to Rfam database...	0.49	0.52	0.48	48	50302	62	6	47	9	45
SRP_00240	Plant_SRP links to Rfam database...	0.76	0.75	0.77	77	48105	33	3	20	10	25
SRP_00241	Plant_SRP links to Rfam database...	0.50	0.51	0.49	42	45970	54	8	36	10	40
SRP_00243	Bacteria_small_SRP links to Rfam database...	0.78	0.74	0.82	23	5123	6	0	5	1	8
SRP_00244	Bacteria_small_SRP links to Rfam database...	0.71	0.64	0.78	25	6871	10	1	6	3	14
SRP_00247	Metazoa_SRP links to Rfam database...	0.51	0.54	0.49	47	47182	55	8	41	6	40
SRP_00250	Bacteria_small_SRP links to Rfam database...	0.76	0.72	0.81	26	6754	9	1	5	3	10
SRP_00251	Bacteria_small_SRP links to Rfam database...	0.76	0.72	0.81	26	6989	9	2	4	3	10
SRP_00252	Metazoa_SRP links to Rfam database...	0.65	0.63	0.67	56	49057	40	2	26	12	33
SRP_00253	Metazoa_SRP links to Rfam database...	0.62	0.62	0.62	56	49364	48	5	30	13	34
SRP_00254	Fungi_SRP links to Rfam database...	0.35	0.36	0.34	22	32321	49	10	32	7	39
SRP_00255	Archaea_SRP links to Rfam database...	0.74	0.76	0.73	71	47489	40	1	25	14	23
SRP_00257	Metazoa_SRP links to Rfam database...	0.62	0.55	0.69	59	50955	29	4	22	3	49
SRP_00260	Metazoa_SRP links to Rfam database...	0.50	0.47	0.53	47	47806	44	6	36	2	53
SRP_00265	Fungi_SRP links to Rfam database...	0.63	0.59	0.68	43	41265	35	7	13	15	30
SRP_00266	Bacteria_small_SRP links to Rfam database...	0.57	0.59	0.57	17	4626	14	2	11	1	12
SRP_00267	Metazoa_SRP links to Rfam database...	0.89	0.89	0.90	85	44457	21	0	9	12	11
SRP_00268	Bacteria_small_SRP links to Rfam database...	0.57	0.56	0.60	15	4161	12	1	9	2	12
SRP_00269	Bacteria_small_SRP links to Rfam database...	0.87	0.82	0.93	27	5021	3	0	2	1	6
SRP_00270	Bacteria_small_SRP links to Rfam database...	0.93	0.87	1.00	27	4629	4	0	0	4	4
SRP_00271	Bacteria_small_SRP links to Rfam database...	0.57	0.50	0.67	12	3222	6	0	6	0	12
SRP_00273	Bacteria_small_SRP links to Rfam database...	0.74	0.65	0.84	26	6755	8	1	4	3	14
SRP_00274	Bacteria_small_SRP links to Rfam database...	0.79	0.71	0.87	27	6872	7	1	3	3	11
SRP_00276	Archaea_SRP links to Rfam database...	0.93	0.91	0.94	100	50615	13	0	6	7	10
SRP_00278	Archaea_SRP links to Rfam database...	0.73	0.69	0.77	72	45963	26	0	21	5	33
SRP_00282	Metazoa_SRP links to Rfam database...	0.27	0.32	0.23	20	43279	76	19	47	10	43
SRP_00285	Bacteria_small_SRP links to Rfam database...	0.86	0.80	0.92	24	3715	3	0	2	1	6
SRP_00290	Fungi_SRP links to Rfam database...	0.48	0.35	0.65	47	100504	36	2	23	11	88
SRP_00295	Bacteria_small_SRP links to Rfam database...	0.80	0.71	0.90	27	6873	8	1	2	5	11
SRP_00299	Metazoa_SRP links to Rfam database...	0.78	0.77	0.80	76	44158	28	0	19	9	23
SRP_00300	Metazoa_SRP links to Rfam database...	0.88	0.86	0.90	81	44163	23	0	9	14	13
SRP_00301	Fungi_SRP links to Rfam database...	0.58	0.47	0.73	40	32585	26	2	13	11	46
SRP_00302	Fungi_SRP links to Rfam database...	0.51	0.44	0.58	36	41554	39	3	23	13	45
SRP_00303	Bacteria_small_SRP links to Rfam database...	0.71	0.69	0.73	22	6640	13	1	7	5	10
SRP_00308	Bacteria_large_SRP links to Rfam database...	0.82	0.73	0.91	64	36245	15	0	6	9	24
SRP_00310	Bacteria_small_SRP links to Rfam database...	0.76	0.78	0.75	18	2902	7	0	6	1	5
SRP_00312	Bacteria_small_SRP links to Rfam database...	0.44	0.41	0.48	11	4163	15	1	11	3	16
SRP_00315	Bacteria_small_SRP links to Rfam database...	0.75	0.78	0.72	18	2901	7	0	7	0	5
SRP_00317	Metazoa_SRP links to Rfam database...	0.89	0.87	0.92	85	45058	22	0	7	15	13
SRP_00318	Bacteria_small_SRP links to Rfam database...	0.71	0.70	0.73	16	2981	6	0	6	0	7
SRP_00321	Archaea_SRP links to Rfam database...	0.76	0.75	0.78	81	47482	30	0	23	7	27
SRP_00322	Archaea_SRP links to Rfam database...	0.79	0.75	0.83	82	48417	26	0	17	9	27
SRP_00323	Archaea_SRP links to Rfam database...	0.85	0.83	0.87	89	47176	22	0	13	9	18
SRP_00324	Bacteria_small_SRP links to Rfam database...	0.47	0.48	0.47	14	5326	16	3	13	0	15
SRP_00325	Bacteria_small_SRP links to Rfam database...	0.92	0.85	1.00	28	4343	2	0	0	2	5
SRP_00326	Bacteria_small_SRP links to Rfam database...	0.90	0.84	0.96	26	5023	4	0	1	3	5
SRP_00328	Metazoa_SRP links to Rfam database...	0.64	0.60	0.69	51	39547	31	4	19	8	34
SRP_00329	Metazoa_SRP links to Rfam database...	0.63	0.60	0.65	51	39825	35	4	23	8	34
SRP_00330	Archaea_SRP links to Rfam database...	0.80	0.80	0.81	76	49992	29	2	16	11	19
SRP_00331	Metazoa_SRP links to Rfam database...	0.55	0.48	0.64	42	37609	30	1	23	6	45
SRP_00332	Archaea_SRP links to Rfam database...	0.95	0.93	0.97	99	50301	15	0	3	12	7
SRP_00333	Bacteria_small_SRP links to Rfam database...	0.92	0.88	0.97	30	5120	2	0	1	1	4
SRP_00335	Bacteria_large_SRP links to Rfam database...	0.35	0.44	0.29	17	35186	58	21	21	16	22
SRP_00337	Bacteria_large_SRP links to Rfam database...	0.78	0.71	0.84	65	35434	14	1	11	2	26
SRP_00338	Bacteria_small_SRP links to Rfam database...	0.75	0.72	0.79	26	5427	8	0	7	1	10
SRP_00339	Archaea_SRP links to Rfam database...	0.78	0.78	0.78	73	44458	27	4	16	7	21
SRP_00340	Metazoa_SRP links to Rfam database...	0.58	0.56	0.60	46	41251	43	4	27	12	36
SRP_00341	Bacteria_small_SRP links to Rfam database...	0.46	0.45	0.47	14	4723	16	0	16	0	17
SRP_00342	Bacteria_small_SRP links to Rfam database...	0.71	0.68	0.74	17	3982	8	1	5	2	8
SRP_00347	Metazoa_SRP links to Rfam database...	0.93	0.93	0.94	89	46570	18	0	6	12	7
SRP_00350	Bacteria_small_SRP links to Rfam database...	0.37	0.33	0.43	9	3895	14	1	11	2	18
SRP_00356	Bacteria_small_SRP links to Rfam database...	0.57	0.50	0.65	15	5027	11	0	8	3	15
SRP_00357	Bacteria_small_SRP links to Rfam database...	0.85	0.81	0.91	29	5324	5	1	2	2	7
SRP_00358	Bacteria_small_SRP links to Rfam database...	0.83	0.77	0.90	27	6298	6	1	2	3	8
SRP_00361	Plant_SRP links to Rfam database...	0.77	0.77	0.77	69	41815	33	5	16	12	21
SRP_00363	Bacteria_small_SRP links to Rfam database...	0.91	0.90	0.93	27	4724	6	0	2	4	3
SRP_00365	Bacteria_small_SRP links to Rfam database...	0.82	0.74	0.91	20	3381	4	0	2	2	7
SRP_00367	Bacteria_small_SRP links to Rfam database...	0.72	0.66	0.79	23	6757	11	1	5	5	12
SRP_00368	Metazoa_SRP links to Rfam database...	0.90	0.88	0.92	86	43863	19	0	7	12	12
SRP_00369	Bacteria_small_SRP links to Rfam database...	0.75	0.69	0.83	24	5749	11	1	4	6	11
SRP_00371	Fungi_SRP links to Rfam database...	0.76	0.71	0.82	58	36244	22	2	11	9	24
SRP_00383	Bacteria_small_SRP links to Rfam database...	0.75	0.67	0.84	16	3221	5	0	3	2	8
TMR_00173	tmRNA links to Rfam database...	0.41	0.31	0.54	13	42171	18	2	9	7	29
TMR_00357	tmRNA links to Rfam database...	0.19	0.13	0.28	12	82985	38	4	27	7	80
TMR_00601	tmRNA links to Rfam database...	0.67	0.62	0.72	26	58960	30	1	9	20	16
TMR_00603	tmRNA links to Rfam database...	0.78	0.70	0.88	30	60344	30	0	4	26	13
TMR_00611	tmRNA links to Rfam database...	0.48	0.35	0.65	36	61370	19	4	15	0	66
TMR_00696	tmRNA links to Rfam database...	0.35	0.25	0.51	28	85023	34	3	24	7	86

^top

Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.

Table of contents:

Overview

Performance plots

Performance of CentroidHomfold‑LAST - scored higher in this pairwise comparison

1. Total counts & total scores for CentroidHomfold‑LAST

2. Individual counts for CentroidHomfold‑LAST [ download as .csv ]

Performance of MXScarna(seed) - scored lower in this pairwise comparison

1. Total counts & total scores for MXScarna(seed)

2. Individual counts for MXScarna(seed) [ download as .csv ]