CompaRNA - on-line benchmarks of RNA structure prediction methods

Laboratory of Structural Bioinformatics @ Adam Mickiewicz University in Poznan

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Overview

Metric	CentroidHomfold‑LAST		RSpredict(seed)
MCC	0.699	>	0.236
Average MCC ± 95% Confidence Intervals	0.713 ± 0.014	>	0.223 ± 0.023
Sensitivity	0.561	>	0.105
Positive Predictive Value	0.872	>	0.530
Total TP	25979	>	4876
Total TN	24113292	<	24133896
Total FP	5103	>	4804
Total FP CONTRA	589	>	400
Total FP INCONS	3233	<	3921
Total FP COMP	1281	>	483
Total FN	20327	<	41430
P-value	3.56938820447e-08

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Performance plots

Comparison of performance of CentroidHomfold-LAST and RSpredict(seed). Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data (individual counts for CentroidHomfold‑LAST and RSpredict(seed)).
Average Matthews Correlation Coefficients (MCC) with 95% confidence intervals (CIs) were plotted for different RNA families, for which at least 3 members were present in the benchmarking dataset. 'n' denotes the number of MCCs used to calculate the average and CI. See tables below for raw data (individual counts for CentroidHomfold‑LAST and RSpredict(seed)).
Comparison of average Matthews Correlation Coefficients (MCCs) for CentroidHomfold-LAST and RSpredict(seed). The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data (individual counts for CentroidHomfold‑LAST and RSpredict(seed)).

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Performance of CentroidHomfold‑LAST - scored higher in this pairwise comparison

1. Total counts & total scores for CentroidHomfold‑LAST

Total Base Pair Counts
Total TP	25979
Total TN	24113292
Total FP	5103
Total FP CONTRA	589
Total FP INCONS	3233
Total FP COMP	1281
Total FN	20327

Total Scores
MCC	0.699
Average MCC ± 95% Confidence Intervals	0.713 ± 0.014
Sensitivity	0.561
Positive Predictive Value	0.872
Nr of predictions	632

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2. Individual counts for CentroidHomfold‑LAST [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00001	RNaseP_arch links to Rfam database...	0.77	0.60	0.98	45	34145	5	0	1	4	30
ASE_00002	RNaseP_arch links to Rfam database...	0.82	0.77	0.88	56	35447	11	1	7	3	17
ASE_00004	RNaseP_bact_a links to Rfam database...	0.66	0.46	0.94	45	47847	3	1	2	0	52
ASE_00005	RNaseP_bact_a links to Rfam database...	0.81	0.67	0.98	78	57890	3	0	2	1	39
ASE_00006	RNaseP_bact_a links to Rfam database...	0.67	0.52	0.87	48	47531	7	1	6	0	45
ASE_00007	RNaseP_bact_a links to Rfam database...	0.79	0.65	0.95	72	59609	9	0	4	5	38
ASE_00009	RNaseP_arch links to Rfam database...	0.56	0.34	0.92	23	26081	3	0	2	1	44
ASE_00010	RNaseP_bact_b links to Rfam database...	0.59	0.37	0.97	30	49739	1	0	1	0	52
ASE_00012	RNaseP_bact_a links to Rfam database...	0.76	0.62	0.94	76	73839	7	2	3	2	47
ASE_00014	RNaseP_arch links to Rfam database...	0.55	0.35	0.86	37	54242	6	1	5	0	69
ASE_00017	RNaseP_nuc links to Rfam database...	0.56	0.38	0.83	24	51011	5	0	5	0	40
ASE_00018	RNaseP_bact_a links to Rfam database...	0.82	0.70	0.95	94	80502	7	0	5	2	40
ASE_00020	RNaseP_bact_a links to Rfam database...	0.66	0.48	0.91	60	73854	7	1	5	1	66
ASE_00021	RNaseP_bact_a links to Rfam database...	0.67	0.47	0.96	75	104118	5	0	3	2	85
ASE_00022	RNaseP_bact_b links to Rfam database...	0.67	0.52	0.87	65	82953	13	0	10	3	59
ASE_00023	RNaseP_bact_a links to Rfam database...	0.63	0.41	0.96	52	84201	4	0	2	2	75
ASE_00025	RNaseP_nuc links to Rfam database...	0.54	0.35	0.83	25	78576	5	0	5	0	46
ASE_00026	RNaseP_bact_a links to Rfam database...	0.67	0.50	0.89	55	59623	8	0	7	1	55
ASE_00028	RNaseP_bact_b links to Rfam database...	0.70	0.53	0.92	67	84593	8	0	6	2	59
ASE_00029	RNaseP_bact_a links to Rfam database...	0.65	0.49	0.86	60	82958	11	0	10	1	62
ASE_00030	RNaseP_bact_a links to Rfam database...	0.53	0.30	0.93	43	85445	3	1	2	0	102
ASE_00031	RNaseP_bact_a links to Rfam database...	0.76	0.59	0.97	74	86660	4	0	2	2	52
ASE_00032	RNaseP_bact_a links to Rfam database...	0.70	0.57	0.87	67	80123	12	0	10	2	51
ASE_00033	RNaseP_bact_a links to Rfam database...	0.78	0.63	0.96	76	64901	4	0	3	1	45
ASE_00035	RNaseP_bact_a links to Rfam database...	0.65	0.44	0.95	52	70445	8	1	2	5	66
ASE_00036	RNaseP_bact_a links to Rfam database...	0.67	0.52	0.87	68	75777	13	3	7	3	64
ASE_00037	RNaseP_bact_a links to Rfam database...	0.78	0.65	0.94	72	59263	8	0	5	3	38
ASE_00038	RNaseP_bact_a links to Rfam database...	0.79	0.66	0.94	67	53557	5	1	3	1	34
ASE_00040	RNaseP_bact_a links to Rfam database...	0.64	0.44	0.94	59	78940	5	2	2	1	74
ASE_00041	RNaseP_bact_a links to Rfam database...	0.73	0.56	0.95	61	57566	7	0	3	4	47
ASE_00042	RNaseP_bact_a links to Rfam database...	0.74	0.58	0.93	84	90010	6	1	5	0	61
ASE_00044	RNaseP_bact_a links to Rfam database...	0.82	0.70	0.97	73	54540	3	0	2	1	32
ASE_00045	RNaseP_bact_b links to Rfam database...	0.53	0.33	0.87	26	47248	4	0	4	0	54
ASE_00046	RNaseP_bact_a links to Rfam database...	0.73	0.56	0.95	58	50342	3	0	3	0	45
ASE_00047	RNaseP_bact_a links to Rfam database...	0.71	0.50	1.00	65	74240	0	0	0	0	65
ASE_00052	RNaseP_bact_a links to Rfam database...	0.53	0.33	0.84	37	61381	7	0	7	0	75
ASE_00053	RNaseP_bact_a links to Rfam database...	0.61	0.44	0.85	58	79333	12	3	7	2	75
ASE_00057	RNaseP_bact_a links to Rfam database...	0.66	0.51	0.87	68	82137	13	5	5	3	66
ASE_00064	RNaseP_bact_a links to Rfam database...	0.75	0.61	0.93	54	45393	8	0	4	4	35
ASE_00066	RNaseP_bact_a links to Rfam database...	0.73	0.53	1.00	69	72321	0	0	0	0	61
ASE_00068	RNaseP_bact_a links to Rfam database...	0.70	0.49	1.00	42	37633	0	0	0	0	43
ASE_00069	RNaseP_bact_a links to Rfam database...	0.70	0.56	0.88	79	82938	14	5	6	3	61
ASE_00074	RNaseP_bact_a links to Rfam database...	0.76	0.62	0.94	74	67817	7	1	4	2	45
ASE_00075	RNaseP_bact_a links to Rfam database...	0.62	0.42	0.93	68	108738	7	1	4	2	94
ASE_00076	RNaseP_bact_a links to Rfam database...	0.60	0.38	0.96	45	68218	2	0	2	0	73
ASE_00077	RNaseP_bact_a links to Rfam database...	0.77	0.65	0.90	56	45088	7	2	4	1	30
ASE_00078	RNaseP_bact_a links to Rfam database...	0.82	0.72	0.94	60	43007	5	1	3	1	23
ASE_00079	RNaseP_bact_a links to Rfam database...	0.63	0.42	0.93	42	55566	4	0	3	1	58
ASE_00080	RNaseP_bact_a links to Rfam database...	0.48	0.30	0.77	37	71583	11	0	11	0	86
ASE_00081	RNaseP_bact_a links to Rfam database...	0.71	0.55	0.93	53	49713	5	1	3	1	44
ASE_00082	RNaseP_bact_a links to Rfam database...	0.44	0.22	0.89	25	70472	3	0	3	0	91
ASE_00083	RNaseP_bact_a links to Rfam database...	0.72	0.56	0.93	62	62414	6	1	4	1	48
ASE_00084	RNaseP_bact_a links to Rfam database...	0.73	0.62	0.87	61	53558	11	2	7	2	38
ASE_00087	RNaseP_bact_a links to Rfam database...	0.58	0.44	0.77	63	88328	21	2	17	2	81
ASE_00090	RNaseP_bact_a links to Rfam database...	0.69	0.60	0.78	61	55533	17	1	16	0	40
ASE_00092	RNaseP_bact_a links to Rfam database...	0.68	0.49	0.96	55	63489	4	0	2	2	58
ASE_00096	RNaseP_bact_a links to Rfam database...	0.51	0.30	0.89	34	63508	5	0	4	1	81
ASE_00099	RNaseP_bact_a links to Rfam database...	0.82	0.68	0.98	82	64536	3	1	1	1	38
ASE_00100	RNaseP_nuc links to Rfam database...	0.54	0.34	0.84	26	82184	6	0	5	1	50
ASE_00102	RNaseP_bact_a links to Rfam database...	0.50	0.27	0.94	45	117807	3	1	2	0	121
ASE_00104	RNaseP_bact_a links to Rfam database...	0.80	0.69	0.93	82	64173	7	1	5	1	37
ASE_00105	RNaseP_bact_a links to Rfam database...	0.61	0.43	0.87	48	64206	9	0	7	2	63
ASE_00107	RNaseP_bact_a links to Rfam database...	0.78	0.72	0.84	91	73045	19	1	16	2	36
ASE_00108	RNaseP_nuc links to Rfam database...	0.59	0.41	0.84	26	46940	5	0	5	0	37
ASE_00111	RNaseP_nuc links to Rfam database...	0.60	0.44	0.83	25	50056	5	0	5	0	32
ASE_00112	RNaseP_bact_a links to Rfam database...	0.79	0.64	0.99	74	75391	4	0	1	3	42
ASE_00114	RNaseP_bact_b links to Rfam database...	0.51	0.36	0.72	28	45412	14	0	11	3	49
ASE_00115	RNaseP_bact_a links to Rfam database...	0.68	0.50	0.93	51	54560	7	0	4	3	50
ASE_00116	RNaseP_arch links to Rfam database...	0.48	0.23	1.00	15	31611	2	0	0	2	51
ASE_00118	RNaseP_bact_a links to Rfam database...	0.52	0.27	1.00	28	60698	2	0	0	2	74
ASE_00119	RNaseP_bact_a links to Rfam database...	0.34	0.13	0.88	14	62819	2	0	2	0	94
ASE_00120	RNaseP_arch links to Rfam database...	0.67	0.53	0.85	50	46912	9	1	8	0	44
ASE_00121	RNaseP_arch links to Rfam database...	0.57	0.39	0.82	36	45106	8	1	7	0	56
ASE_00122	RNaseP_bact_a links to Rfam database...	0.78	0.61	1.00	54	43311	0	0	0	0	34
ASE_00123	RNaseP_bact_a links to Rfam database...	0.64	0.46	0.89	39	38459	6	1	4	1	46
ASE_00125	RNaseP_bact_a links to Rfam database...	0.68	0.50	0.92	44	39292	5	1	3	1	44
ASE_00126	RNaseP_bact_a links to Rfam database...	0.75	0.68	0.82	56	40402	13	1	11	1	26
ASE_00128	RNaseP_bact_a links to Rfam database...	0.72	0.56	0.93	56	53241	4	1	3	0	44
ASE_00129	RNaseP_bact_a links to Rfam database...	0.74	0.64	0.87	71	62753	13	1	10	2	40
ASE_00131	RNaseP_bact_a links to Rfam database...	0.63	0.45	0.88	38	39297	9	1	4	4	47
ASE_00132	RNaseP_bact_a links to Rfam database...	0.65	0.47	0.88	45	50352	7	2	4	1	50
ASE_00134	RNaseP_bact_a links to Rfam database...	0.74	0.61	0.91	58	50339	7	1	5	1	37
ASE_00135	RNaseP_bact_a links to Rfam database...	0.64	0.46	0.89	50	63134	7	1	5	1	59
ASE_00136	RNaseP_bact_a links to Rfam database...	0.75	0.61	0.92	56	48144	8	1	4	3	36
ASE_00137	RNaseP_bact_a links to Rfam database...	0.80	0.68	0.93	67	48444	5	1	4	0	31
ASE_00138	RNaseP_bact_a links to Rfam database...	0.80	0.65	0.98	53	40416	2	0	1	1	28
ASE_00139	RNaseP_bact_a links to Rfam database...	0.65	0.42	1.00	44	54241	0	0	0	0	60
ASE_00140	RNaseP_bact_a links to Rfam database...	0.66	0.47	0.92	59	70812	7	1	4	2	66
ASE_00142	RNaseP_bact_a links to Rfam database...	0.80	0.70	0.92	85	67069	8	3	4	1	37
ASE_00145	RNaseP_arch links to Rfam database...	0.64	0.50	0.81	56	70056	13	0	13	0	55
ASE_00146	RNaseP_bact_a links to Rfam database...	0.68	0.54	0.86	67	70798	12	1	10	1	57
ASE_00148	RNaseP_arch links to Rfam database...	0.49	0.27	0.89	41	112529	5	0	5	0	113
ASE_00151	RNaseP_bact_a links to Rfam database...	0.73	0.62	0.86	61	51932	10	4	6	0	37
ASE_00153	RNaseP_nuc links to Rfam database...	0.54	0.48	0.60	35	57572	43	2	21	20	38
ASE_00154	RNaseP_arch links to Rfam database...	0.60	0.43	0.85	46	65287	8	0	8	0	61
ASE_00155	RNaseP_arch links to Rfam database...	0.56	0.35	0.88	50	93471	7	0	7	0	92
ASE_00161	RNaseP_bact_b links to Rfam database...	0.71	0.53	0.96	46	53580	2	0	2	0	41
ASE_00163	RNaseP_bact_a links to Rfam database...	0.72	0.54	0.96	50	53249	2	0	2	0	43
ASE_00165	RNaseP_bact_a links to Rfam database...	0.67	0.50	0.89	51	52918	6	1	5	0	50
ASE_00168	RNaseP_nuc links to Rfam database...	0.44	0.25	0.76	16	60705	5	0	5	0	48
ASE_00169	RNaseP_bact_a links to Rfam database...	0.62	0.39	0.98	42	57248	1	0	1	0	65
ASE_00170	RNaseP_bact_a links to Rfam database...	0.70	0.55	0.89	51	48771	6	0	6	0	42
ASE_00171	RNaseP_bact_a links to Rfam database...	0.72	0.57	0.92	54	48457	7	1	4	2	40
ASE_00172	RNaseP_bact_a links to Rfam database...	0.69	0.49	0.98	52	58943	2	0	1	1	54
ASE_00174	RNaseP_bact_a links to Rfam database...	0.66	0.47	0.94	51	61021	3	1	2	0	58
ASE_00175	RNaseP_bact_a links to Rfam database...	0.53	0.42	0.66	45	59963	24	3	20	1	62
ASE_00176	RNaseP_bact_a links to Rfam database...	0.62	0.39	1.00	43	59988	0	0	0	0	67
ASE_00179	RNaseP_bact_a links to Rfam database...	0.71	0.52	0.96	44	44207	2	1	1	0	40
ASE_00180	RNaseP_bact_a links to Rfam database...	0.70	0.53	0.91	53	51302	6	0	5	1	47
ASE_00181	RNaseP_bact_a links to Rfam database...	0.71	0.54	0.95	57	57570	5	0	3	2	49
ASE_00182	RNaseP_bact_a links to Rfam database...	0.55	0.35	0.86	48	84199	8	1	7	0	88
ASE_00184	RNaseP_bact_a links to Rfam database...	0.69	0.58	0.83	59	54544	13	2	10	1	43
ASE_00185	RNaseP_bact_a links to Rfam database...	0.62	0.41	0.95	52	73481	4	1	2	1	76
ASE_00186	RNaseP_bact_a links to Rfam database...	0.79	0.73	0.86	96	78892	16	1	14	1	36
ASE_00187	RNaseP_arch links to Rfam database...	0.65	0.44	0.94	51	68581	5	0	3	2	64
ASE_00189	RNaseP_bact_b links to Rfam database...	0.42	0.23	0.77	23	63160	7	0	7	0	79
ASE_00190	RNaseP_bact_b links to Rfam database...	0.46	0.23	0.91	21	45428	3	0	2	1	69
ASE_00191	RNaseP_arch links to Rfam database...	0.53	0.31	0.90	19	29625	2	0	2	0	42
ASE_00192	RNaseP_bact_b links to Rfam database...	0.30	0.09	1.00	12	84654	0	0	0	0	121
ASE_00194	RNaseP_bact_b links to Rfam database...	0.43	0.18	1.00	22	73514	0	0	0	0	97
ASE_00196	RNaseP_arch links to Rfam database...	0.65	0.47	0.90	35	31587	4	0	4	0	40
ASE_00197	RNaseP_bact_a links to Rfam database...	0.74	0.64	0.86	93	89145	15	1	14	0	52
ASE_00198	RNaseP_bact_a links to Rfam database...	0.80	0.68	0.96	69	52578	3	1	2	0	33
ASE_00203	RNaseP_bact_a links to Rfam database...	0.82	0.70	0.96	67	46595	4	1	2	1	29
ASE_00204	RNaseP_bact_b links to Rfam database...	0.33	0.13	0.83	15	67878	3	0	3	0	97
ASE_00205	RNaseP_arch links to Rfam database...	0.68	0.54	0.84	49	45998	12	0	9	3	41
ASE_00209	RNaseP_arch links to Rfam database...	0.63	0.45	0.87	40	43025	6	1	5	0	48
ASE_00210	RNaseP_arch links to Rfam database...	0.79	0.69	0.90	45	27211	5	0	5	0	20
ASE_00212	RNaseP_bact_a links to Rfam database...	0.75	0.65	0.86	96	93849	16	1	15	0	52
ASE_00213	RNaseP_arch links to Rfam database...	0.85	0.77	0.94	51	27207	5	0	3	2	15
ASE_00214	RNaseP_bact_a links to Rfam database...	0.69	0.59	0.80	61	56204	17	2	13	2	42
ASE_00215	RNaseP_bact_a links to Rfam database...	0.62	0.40	0.95	40	48474	3	1	1	1	59
ASE_00216	RNaseP_bact_a links to Rfam database...	0.82	0.71	0.95	58	39279	3	0	3	0	24
ASE_00217	RNaseP_bact_a links to Rfam database...	0.67	0.56	0.82	50	40409	14	1	10	3	40
ASE_00221	RNaseP_bact_a links to Rfam database...	0.75	0.61	0.93	71	64544	6	1	4	1	46
ASE_00222	RNaseP_arch links to Rfam database...	0.52	0.31	0.86	49	112044	8	0	8	0	108
ASE_00227	RNaseP_bact_a links to Rfam database...	0.41	0.18	0.92	24	78977	2	0	2	0	109
ASE_00228	RNaseP_bact_a links to Rfam database...	0.79	0.69	0.92	59	46907	6	2	3	1	27
ASE_00229	RNaseP_bact_a links to Rfam database...	0.79	0.69	0.90	60	42419	7	1	6	0	27
ASE_00231	RNaseP_bact_a links to Rfam database...	0.76	0.63	0.92	60	47830	5	1	4	0	36
ASE_00232	RNaseP_bact_a links to Rfam database...	0.85	0.75	0.95	63	38437	3	2	1	0	21
ASE_00234	RNaseP_bact_a links to Rfam database...	0.61	0.42	0.90	54	75406	8	1	5	2	75
ASE_00237	RNaseP_nuc links to Rfam database...	0.67	0.54	0.83	30	45717	6	0	6	0	26
ASE_00238	RNaseP_bact_a links to Rfam database...	0.57	0.37	0.89	42	64214	5	0	5	0	72
ASE_00240	RNaseP_bact_a links to Rfam database...	0.53	0.30	0.93	28	46635	2	1	1	0	65
ASE_00241	RNaseP_bact_a links to Rfam database...	0.73	0.64	0.84	56	43889	12	2	9	1	31
ASE_00242	RNaseP_bact_a links to Rfam database...	0.81	0.71	0.93	79	60990	7	0	6	1	33
ASE_00245	RNaseP_nuc links to Rfam database...	0.90	0.86	0.94	67	55207	31	0	4	27	11
ASE_00246	RNaseP_nuc links to Rfam database...	0.37	0.22	0.63	15	48181	9	1	8	0	52
ASE_00247	RNaseP_nuc links to Rfam database...	0.67	0.52	0.87	33	54247	5	0	5	0	31
ASE_00248	RNaseP_bact_a links to Rfam database...	0.82	0.71	0.94	81	62395	6	0	5	1	33
ASE_00250	RNaseP_bact_a links to Rfam database...	0.70	0.50	1.00	65	78938	0	0	0	0	66
ASE_00251	RNaseP_nuc links to Rfam database...	0.79	0.67	0.94	29	17735	5	0	2	3	14
ASE_00252	RNaseP_bact_a links to Rfam database...	0.58	0.37	0.93	62	115373	6	0	5	1	106
ASE_00254	RNaseP_bact_a links to Rfam database...	0.84	0.74	0.95	61	36792	4	2	1	1	21
ASE_00255	RNaseP_bact_a links to Rfam database...	0.73	0.57	0.94	74	74612	5	0	5	0	56
ASE_00257	RNaseP_bact_a links to Rfam database...	0.82	0.68	0.99	66	50973	2	0	1	1	31
ASE_00258	RNaseP_nuc links to Rfam database...	0.96	0.93	1.00	50	26746	5	0	0	5	4
ASE_00259	RNaseP_bact_a links to Rfam database...	0.60	0.40	0.91	48	73100	5	0	5	0	73
ASE_00263	RNaseP_bact_a links to Rfam database...	0.69	0.48	0.98	58	70441	2	0	1	1	62
ASE_00264	RNaseP_nuc links to Rfam database...	0.77	0.61	0.98	61	49079	7	0	1	6	39
ASE_00267	RNaseP_bact_a links to Rfam database...	0.72	0.66	0.79	58	45077	17	2	13	2	30
ASE_00270	RNaseP_bact_a links to Rfam database...	0.52	0.27	1.00	35	72355	0	0	0	0	93
ASE_00274	RNaseP_bact_a links to Rfam database...	0.66	0.47	0.92	48	55559	5	0	4	1	55
ASE_00277	RNaseP_bact_a links to Rfam database...	0.64	0.56	0.74	51	48136	21	3	15	3	40
ASE_00279	RNaseP_bact_a links to Rfam database...	0.72	0.58	0.89	59	53235	8	3	4	1	42
ASE_00280	RNaseP_bact_a links to Rfam database...	0.75	0.58	0.97	57	51944	3	0	2	1	41
ASE_00281	RNaseP_bact_a links to Rfam database...	0.81	0.68	0.97	60	44489	2	1	1	0	28
ASE_00282	RNaseP_bact_a links to Rfam database...	0.60	0.40	0.89	51	77758	7	3	3	1	76
ASE_00283	RNaseP_bact_a links to Rfam database...	0.71	0.56	0.91	60	61710	7	2	4	1	47
ASE_00284	RNaseP_bact_a links to Rfam database...	0.68	0.51	0.90	55	58250	7	2	4	1	53
ASE_00285	RNaseP_bact_a links to Rfam database...	0.63	0.44	0.89	54	68945	8	3	4	1	68
ASE_00286	RNaseP_bact_a links to Rfam database...	0.75	0.59	0.95	54	46608	3	1	2	0	38
ASE_00287	RNaseP_bact_a links to Rfam database...	0.66	0.49	0.91	50	54891	6	0	5	1	53
ASE_00288	RNaseP_bact_a links to Rfam database...	0.70	0.51	0.96	47	46007	2	0	2	0	46
ASE_00289	RNaseP_bact_a links to Rfam database...	0.53	0.30	0.94	47	100975	3	0	3	0	110
ASE_00292	RNaseP_bact_a links to Rfam database...	0.55	0.43	0.71	59	81727	25	3	21	1	79
ASE_00294	RNaseP_bact_a links to Rfam database...	0.75	0.60	0.94	103	114372	8	1	5	2	68
ASE_00295	RNaseP_bact_a links to Rfam database...	0.70	0.54	0.91	71	73842	8	1	6	1	60
ASE_00296	RNaseP_bact_a links to Rfam database...	0.71	0.53	0.96	77	91726	4	0	3	1	68
ASE_00297	RNaseP_bact_a links to Rfam database...	0.68	0.47	0.98	46	52928	1	0	1	0	52
ASE_00298	RNaseP_bact_a links to Rfam database...	0.62	0.39	1.00	44	67484	1	0	0	1	69
ASE_00299	RNaseP_bact_a links to Rfam database...	0.74	0.58	0.94	58	49393	8	1	3	4	42
ASE_00303	RNaseP_nuc links to Rfam database...	0.70	0.61	0.81	58	67824	24	0	14	10	37
ASE_00305	RNaseP_bact_b links to Rfam database...	0.81	0.71	0.94	60	54551	11	0	4	7	25
ASE_00313	RNaseP_nuc links to Rfam database...	0.62	0.52	0.74	46	62419	16	2	14	0	43
ASE_00316	RNaseP_nuc links to Rfam database...	0.57	0.41	0.78	40	107829	16	2	9	5	58
ASE_00318	RNaseP_bact_b links to Rfam database...	0.55	0.35	0.87	41	80153	12	0	6	6	77
ASE_00321	RNaseP_bact_b links to Rfam database...	0.81	0.67	0.98	59	54555	4	0	1	3	29
ASE_00327	RNaseP_nuc links to Rfam database...	0.78	0.70	0.87	62	57220	13	3	6	4	27
ASE_00328	RNaseP_bact_b links to Rfam database...	0.80	0.66	0.97	74	72695	9	0	2	7	38
ASE_00329	RNaseP_nuc links to Rfam database...	0.85	0.84	0.87	53	40694	31	6	2	23	10
ASE_00330	RNaseP_nuc links to Rfam database...	0.66	0.46	0.95	41	56237	6	0	2	4	49
ASE_00332	RNaseP_bact_a links to Rfam database...	0.80	0.71	0.89	98	81700	14	1	11	2	40
ASE_00335	RNaseP_bact_b links to Rfam database...	0.80	0.66	0.97	76	75388	8	0	2	6	40
ASE_00337	RNaseP_nuc links to Rfam database...	0.53	0.51	0.55	36	39275	45	5	24	16	35
ASE_00338	RNaseP_nuc links to Rfam database...	0.67	0.61	0.73	60	66348	36	3	19	14	38
ASE_00339	RNaseP_bact_a links to Rfam database...	0.79	0.64	0.97	76	80122	8	0	2	6	43
ASE_00340	RNaseP_bact_a links to Rfam database...	0.63	0.48	0.84	41	46007	11	6	2	3	44
ASE_00342	RNaseP_bact_a links to Rfam database...	0.82	0.75	0.90	86	62385	12	1	9	2	29
ASE_00343	RNaseP_bact_a links to Rfam database...	0.73	0.61	0.88	69	83358	16	0	9	7	44
ASE_00346	RNaseP_arch links to Rfam database...	0.52	0.41	0.67	40	48145	24	3	17	4	57
ASE_00353	RNaseP_bact_a links to Rfam database...	0.79	0.69	0.91	74	57889	7	1	6	0	33
ASE_00359	RNaseP_arch links to Rfam database...	0.44	0.23	0.86	18	42757	3	0	3	0	62
ASE_00360	RNaseP_arch links to Rfam database...	0.64	0.52	0.79	34	29360	9	1	8	0	31
ASE_00361	RNaseP_bact_a links to Rfam database...	0.65	0.43	0.96	55	75409	4	0	2	2	72
ASE_00362	RNaseP_bact_a links to Rfam database...	0.80	0.69	0.93	63	48137	7	1	4	2	28
ASE_00363	RNaseP_bact_a links to Rfam database...	0.75	0.64	0.88	60	51292	9	1	7	1	34
ASE_00364	RNaseP_bact_a links to Rfam database...	0.79	0.67	0.93	70	54210	6	1	4	1	35
ASE_00366	RNaseP_bact_a links to Rfam database...	0.68	0.49	0.94	48	58602	4	0	3	1	50
ASE_00367	RNaseP_bact_a links to Rfam database...	0.78	0.70	0.87	60	43002	11	1	8	2	26
ASE_00369	RNaseP_bact_a links to Rfam database...	0.79	0.64	0.97	68	55875	2	0	2	0	39
ASE_00370	RNaseP_bact_a links to Rfam database...	0.78	0.67	0.90	56	41843	7	1	5	1	28
ASE_00372	RNaseP_bact_a links to Rfam database...	0.70	0.54	0.90	54	51943	6	3	3	0	46
ASE_00374	RNaseP_bact_a links to Rfam database...	0.77	0.64	0.93	56	44790	4	2	2	0	32
ASE_00375	RNaseP_bact_a links to Rfam database...	0.71	0.50	1.00	55	60323	0	0	0	0	55
ASE_00376	RNaseP_bact_a links to Rfam database...	0.65	0.51	0.83	54	56888	15	0	11	4	51
ASE_00377	RNaseP_bact_a links to Rfam database...	0.75	0.62	0.92	66	57558	7	0	6	1	41
ASE_00379	RNaseP_bact_a links to Rfam database...	0.75	0.63	0.90	56	45994	6	2	4	0	33
ASE_00380	RNaseP_bact_a links to Rfam database...	0.69	0.47	1.00	47	54899	0	0	0	0	52
ASE_00382	RNaseP_bact_a links to Rfam database...	0.78	0.69	0.89	58	41840	8	1	6	1	26
ASE_00383	RNaseP_bact_a links to Rfam database...	0.79	0.66	0.95	69	54542	5	1	3	1	36
ASE_00384	RNaseP_bact_a links to Rfam database...	0.78	0.68	0.90	63	48446	8	1	6	1	29
ASE_00385	RNaseP_bact_a links to Rfam database...	0.68	0.53	0.88	43	41856	6	3	3	0	38
ASE_00386	RNaseP_bact_a links to Rfam database...	0.70	0.56	0.87	54	50341	9	1	7	1	42
ASE_00387	RNaseP_bact_a links to Rfam database...	0.63	0.45	0.87	47	55891	8	1	6	1	57
ASE_00388	RNaseP_bact_a links to Rfam database...	0.78	0.69	0.90	61	45685	9	1	6	2	28
ASE_00390	RNaseP_bact_a links to Rfam database...	0.81	0.72	0.91	61	42128	8	1	5	2	24
ASE_00393	RNaseP_bact_a links to Rfam database...	0.70	0.57	0.87	53	47834	9	1	7	1	40
ASE_00394	RNaseP_bact_a links to Rfam database...	0.72	0.62	0.83	58	46901	14	1	11	2	35
ASE_00395	RNaseP_bact_a links to Rfam database...	0.78	0.71	0.86	60	41546	12	1	9	2	24
ASE_00396	RNaseP_bact_a links to Rfam database...	0.78	0.71	0.86	59	41547	12	2	8	2	24
ASE_00397	RNaseP_bact_a links to Rfam database...	0.80	0.69	0.92	72	54537	7	1	5	1	33
ASE_00398	RNaseP_bact_a links to Rfam database...	0.68	0.53	0.87	55	55882	11	1	7	3	49
ASE_00400	RNaseP_bact_a links to Rfam database...	0.67	0.45	0.98	48	57921	1	0	1	0	58
ASE_00401	RNaseP_bact_a links to Rfam database...	0.60	0.37	0.98	47	76980	2	0	1	1	79
ASE_00402	RNaseP_bact_a links to Rfam database...	0.79	0.68	0.91	58	42422	8	1	5	2	27
ASE_00403	RNaseP_bact_a links to Rfam database...	0.75	0.63	0.91	67	55871	7	1	6	0	40
ASE_00404	RNaseP_bact_a links to Rfam database...	0.81	0.69	0.94	59	43008	5	0	4	1	26
ASE_00406	RNaseP_bact_a links to Rfam database...	0.73	0.62	0.85	58	48760	12	1	9	2	36
ASE_00411	RNaseP_bact_a links to Rfam database...	0.64	0.44	0.93	39	49413	3	0	3	0	50
ASE_00412	RNaseP_bact_a links to Rfam database...	0.62	0.40	0.98	42	58268	3	0	1	2	63
ASE_00413	RNaseP_bact_a links to Rfam database...	0.72	0.54	0.96	44	44505	2	0	2	0	37
ASE_00414	RNaseP_bact_a links to Rfam database...	0.62	0.47	0.80	45	46304	11	0	11	0	50
ASE_00415	RNaseP_bact_a links to Rfam database...	0.55	0.34	0.90	35	54907	4	0	4	0	68
ASE_00416	RNaseP_bact_a links to Rfam database...	0.58	0.36	0.92	46	77371	5	1	3	1	81
ASE_00417	RNaseP_arch links to Rfam database...	0.51	0.43	0.61	43	54545	28	1	26	1	57
ASE_00418	RNaseP_arch links to Rfam database...	0.42	0.33	0.53	25	38734	23	1	21	1	50
ASE_00419	RNaseP_bact_a links to Rfam database...	0.67	0.48	0.94	49	54894	3	1	2	0	54
ASE_00420	RNaseP_nuc links to Rfam database...	0.75	0.63	0.89	40	43320	10	0	5	5	23
ASE_00422	RNaseP_bact_a links to Rfam database...	0.72	0.55	0.95	52	46916	4	0	3	1	42
ASE_00423	RNaseP_bact_a links to Rfam database...	0.76	0.59	0.98	64	56888	2	1	0	1	45
ASE_00426	RNaseP_bact_a links to Rfam database...	0.52	0.27	1.00	29	61046	0	0	0	0	79
ASE_00427	RNaseP_nuc links to Rfam database...	0.48	0.43	0.54	20	40718	27	1	16	10	26
ASE_00428	RNaseP_bact_a links to Rfam database...	0.60	0.39	0.91	49	76582	6	1	4	1	76
ASE_00430	RNaseP_bact_a links to Rfam database...	0.77	0.61	0.98	59	46911	3	0	1	2	38
ASE_00431	RNaseP_bact_a links to Rfam database...	0.62	0.49	0.78	47	46300	13	1	12	0	48
ASE_00434	RNaseP_bact_b links to Rfam database...	0.50	0.26	0.94	29	68234	2	0	2	0	81
ASE_00437	RNaseP_bact_a links to Rfam database...	0.55	0.47	0.66	63	79305	35	1	32	2	72
ASE_00438	RNaseP_bact_a links to Rfam database...	0.43	0.18	1.00	21	66045	0	0	0	0	95
ASE_00441	RNaseP_bact_a links to Rfam database...	0.63	0.44	0.91	49	64207	9	0	5	4	63
ASE_00443	RNaseP_nuc links to Rfam database...	0.85	0.76	0.95	38	26756	24	0	2	22	12
ASE_00447	RNaseP_bact_a links to Rfam database...	0.73	0.55	0.97	64	60312	3	0	2	1	52
ASE_00448	RNaseP_bact_a links to Rfam database...	0.75	0.63	0.88	71	64180	11	1	9	1	41
ASE_00451	RNaseP_bact_a links to Rfam database...	0.77	0.72	0.83	90	70768	20	1	17	2	35
ASE_00454	RNaseP_nuc links to Rfam database...	0.46	0.38	0.55	24	43321	30	5	15	10	39
CRW_00013	Intron_gpI links to Rfam database...	0.62	0.42	0.92	48	103688	4	0	4	0	67
CRW_00016	Intron_gpI links to Rfam database...	0.70	0.50	0.97	60	77359	2	0	2	0	60
CRW_00610	Intron_gpI links to Rfam database...	0.66	0.46	0.95	37	36276	2	0	2	0	44
CRW_00613	Intron_gpI links to Rfam database...	0.74	0.55	1.00	43	34937	0	0	0	0	35
CRW_00614	Intron_gpI links to Rfam database...	0.21	0.18	0.25	10	121731	73	7	23	43	47
CRW_00618	Intron_gpI links to Rfam database...	0.38	0.25	0.58	15	56254	20	1	10	9	46
CRW_00633	Intron_gpI links to Rfam database...	0.64	0.42	0.98	45	63500	2	1	0	1	61
CRW_00634	Intron_gpI links to Rfam database...	0.69	0.54	0.88	51	64562	7	1	6	0	43
CRW_00670	Intron_gpI links to Rfam database...	0.69	0.50	0.95	60	70062	3	0	3	0	60
CRW_00671	Intron_gpI links to Rfam database...	0.66	0.48	0.92	56	62774	5	1	4	0	61
CRW_00672	Intron_gpI links to Rfam database...	0.69	0.50	0.96	55	72333	3	0	2	1	56
CRW_00674	Intron_gpI links to Rfam database...	0.76	0.57	1.00	71	83365	1	0	0	1	53
CRW_00676	Intron_gpI links to Rfam database...	0.73	0.55	0.98	63	93464	3	0	1	2	52
CRW_00692	Intron_gpI links to Rfam database...	0.82	0.70	0.95	63	68569	3	0	3	0	27
PDB_00005	Tymo_tRNA-like links to Rfam database...	0.70	0.50	1.00	7	939	0	0	0	0	7
PDB_00012	mir-TAR links to Rfam database...	1.00	1.00	1.00	7	399	1	0	0	1	0
PDB_00213	Gammaretro_CES links to Rfam database...	0.83	0.73	0.94	30	5018	2	0	2	0	11
PDB_00553	mir-TAR links to Rfam database...	1.00	1.00	1.00	11	454	0	0	0	0	0
PDB_00716	HDV_ribozyme links to Rfam database...	0.25	0.22	0.29	5	2684	12	0	12	0	18
PDB_00741	Entero_5_CRE links to Rfam database...	0.87	0.76	1.00	13	690	0	0	0	0	4
PDB_00810	s2m links to Rfam database...	0.84	0.71	1.00	12	1069	0	0	0	0	5
PDB_00827	Intron_gpI links to Rfam database...	0.73	0.54	0.98	44	26983	2	0	1	1	37
PDB_00828	Purine links to Rfam database...	0.84	0.70	1.00	19	2466	0	0	0	0	8
PDB_00829	Purine links to Rfam database...	0.84	0.71	1.00	17	2261	0	0	0	0	7
PDB_00876	HIV_FE links to Rfam database...	0.92	0.90	0.95	18	971	1	0	1	0	2
PDB_00919	RNaseP_bact_a links to Rfam database...	0.62	0.40	0.95	41	44210	2	0	2	0	62
PDB_01001	tRNA links to Rfam database...	0.57	0.56	0.59	10	2128	7	3	4	0	8
PDB_01020	Purine links to Rfam database...	0.86	0.74	1.00	17	2261	0	0	0	0	6
PDB_01050	UnaL2 links to Rfam database...	0.78	0.62	1.00	8	622	1	0	0	1	5
PDB_01051	Telomerase-cil links to Rfam database...	0.96	0.92	1.00	12	891	4	0	0	4	1
PDB_01073	SAM links to Rfam database...	0.84	0.71	1.00	24	4347	1	0	0	1	10
PDB_01092	glmS links to Rfam database...	0.74	0.60	0.91	31	10119	5	0	3	2	21
PDB_01114	TPP links to Rfam database...	0.29	0.15	0.57	4	2843	3	0	3	0	23
PDB_01152	HIV_FS2 links to Rfam database...	0.88	0.79	1.00	11	550	0	0	0	0	3
PDB_01236	ykoK links to Rfam database...	0.84	0.72	0.98	39	11588	2	0	1	1	15
RFA_00389	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00390	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00391	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	2	0	0	2	1
RFA_00396	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	2	0	0	2	1
RFA_00402	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	0	0	0	0	0
RFA_00409	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	2	0	0	2	1
RFA_00416	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1470	2	0	0	2	0
RFA_00425	Hammerhead_3 links to Rfam database...	0.64	0.60	0.69	9	1640	9	0	4	5	6
RFA_00427	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1471	3	0	0	3	1
RFA_00433	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00434	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00436	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00440	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1470	2	0	0	2	0
RFA_00442	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00444	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1525	1	0	0	1	0
RFA_00446	Hammerhead_3 links to Rfam database...	0.89	0.80	1.00	12	1473	2	0	0	2	3
RFA_00449	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1471	2	0	0	2	1
RFA_00582	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	5980	17	0	0	17	0
RFA_00583	Y_RNA links to Rfam database...	0.93	0.93	0.93	14	4935	15	0	1	14	1
RFA_00584	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	2911	12	0	0	12	0
RFA_00585	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4836	12	0	0	12	0
RFA_00586	Y_RNA links to Rfam database...	0.97	0.93	1.00	14	3902	9	0	0	9	1
RFA_00587	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4836	15	0	0	15	0
RFA_00588	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4545	8	0	0	8	0
RFA_00589	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4356	17	0	0	17	0
RFA_00594	Y_RNA links to Rfam database...	0.97	0.93	1.00	14	2761	6	0	0	6	1
RFA_00596	Y_RNA links to Rfam database...	0.86	0.73	1.00	11	5984	15	0	0	15	4
RFA_00597	Telomerase-vert links to Rfam database...	0.50	0.25	1.00	27	97876	3	0	0	3	82
RFA_00598	Telomerase-vert links to Rfam database...	0.58	0.34	1.00	34	84632	5	0	0	5	67
RFA_00599	Telomerase-vert links to Rfam database...	0.65	0.46	0.91	51	101419	10	3	2	5	60
RFA_00600	Telomerase-vert links to Rfam database...	0.51	0.29	0.91	29	120263	7	0	3	4	71
RFA_00601	Telomerase-vert links to Rfam database...	0.86	0.82	0.91	93	99133	20	3	6	11	21
RFA_00602	Telomerase-vert links to Rfam database...	0.85	0.80	0.90	93	101372	20	3	7	10	23
RFA_00603	Telomerase-cil links to Rfam database...	0.78	0.71	0.86	25	13501	4	3	1	0	10
RFA_00604	Telomerase-cil links to Rfam database...	0.74	0.63	0.88	22	13505	8	3	0	5	13
RFA_00605	Telomerase-cil links to Rfam database...	0.43	0.34	0.55	12	15203	18	0	10	8	23
RFA_00606	Telomerase-cil links to Rfam database...	0.72	0.69	0.75	27	21285	17	7	2	8	12
RFA_00607	Telomerase-cil links to Rfam database...	0.91	0.83	1.00	30	17736	7	0	0	7	6
RFA_00609	Telomerase-cil links to Rfam database...	0.92	0.89	0.94	33	17920	11	0	2	9	4
RFA_00610	Telomerase-cil links to Rfam database...	0.89	0.84	0.94	31	17172	13	0	2	11	6
RFA_00611	Telomerase-cil links to Rfam database...	0.77	0.69	0.86	24	13013	4	3	1	0	11
RFA_00613	Telomerase-cil links to Rfam database...	0.73	0.66	0.82	23	12852	5	4	1	0	12
RFA_00615	Telomerase-cil links to Rfam database...	0.78	0.71	0.86	25	13337	4	3	1	0	10
RFA_00620	Telomerase-cil links to Rfam database...	0.23	0.15	0.35	6	21928	16	1	10	5	33
RFA_00621	RNase_MRP links to Rfam database...	0.53	0.50	0.56	38	46292	40	1	29	10	38
RFA_00623	RNase_MRP links to Rfam database...	0.53	0.50	0.57	39	43887	40	1	29	10	39
RFA_00624	RNase_MRP links to Rfam database...	0.40	0.16	1.00	10	30125	0	0	0	0	51
RFA_00626	rne5 links to Rfam database...	0.85	0.79	0.92	69	56541	13	1	5	7	18
RFA_00627	rne5 links to Rfam database...	0.86	0.75	0.98	65	56887	13	0	1	12	22
RFA_00628	rne5 links to Rfam database...	0.86	0.78	0.94	67	57220	7	1	3	3	19
RFA_00630	rne5 links to Rfam database...	0.87	0.83	0.92	72	56875	10	1	5	4	15
RFA_00632	HDV_ribozyme links to Rfam database...	0.51	0.50	0.52	14	4068	13	3	10	0	14
RFA_00636	HDV_ribozyme links to Rfam database...	0.64	0.64	0.64	18	3977	10	3	7	0	10
RFA_00639	7SK links to Rfam database...	0.51	0.46	0.56	40	54544	38	3	28	7	47
RFA_00642	Vimentin3 links to Rfam database...	0.00	0.00	0.00	0	2923	3	0	3	0	18
RFA_00643	Vimentin3 links to Rfam database...	0.50	0.33	0.75	6	2203	2	0	2	0	12
RFA_00644	Vimentin3 links to Rfam database...	0.27	0.22	0.33	4	2689	9	3	5	1	14
RFA_00645	Vimentin3 links to Rfam database...	-0.01	0.00	0.00	0	2405	10	2	8	0	18
RFA_00649	Vimentin3 links to Rfam database...	0.75	0.61	0.92	11	2133	1	0	1	0	7
RFA_00651	Vimentin3 links to Rfam database...	0.76	0.72	0.81	13	2064	4	0	3	1	5
RFA_00653	Vimentin3 links to Rfam database...	0.29	0.28	0.31	5	2129	11	3	8	0	13
RFA_00654	Vimentin3 links to Rfam database...	0.62	0.39	1.00	7	2408	0	0	0	0	11
RFA_00658	Hammerhead_1 links to Rfam database...	0.69	0.64	0.75	9	1116	5	0	3	2	5
RFA_00659	Hammerhead_1 links to Rfam database...	0.47	0.36	0.63	5	1120	5	0	3	2	9
RFA_00664	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	983	7	0	7	0	14
RFA_00667	Hammerhead_1 links to Rfam database...	0.30	0.29	0.33	4	978	9	1	7	1	10
RFA_00668	Hammerhead_1 links to Rfam database...	0.44	0.36	0.56	5	981	4	0	4	0	9
RFA_00672	Hammerhead_1 links to Rfam database...	0.68	0.46	1.00	6	897	0	0	0	0	7
RFA_00673	Hammerhead_1 links to Rfam database...	0.44	0.36	0.56	5	1119	5	0	4	1	9
RFA_00674	Hammerhead_1 links to Rfam database...	0.74	0.71	0.77	10	1115	4	0	3	1	4
RFA_00675	Hammerhead_1 links to Rfam database...	0.35	0.29	0.44	4	981	5	0	5	0	10
RFA_00677	Hammerhead_1 links to Rfam database...	0.74	0.71	0.77	10	977	5	0	3	2	4
RFA_00678	Hammerhead_1 links to Rfam database...	0.80	0.64	1.00	9	937	0	0	0	0	5
RFA_00680	Hammerhead_1 links to Rfam database...	0.74	0.71	0.77	10	1115	5	0	3	2	4
RFA_00684	Hammerhead_1 links to Rfam database...	0.84	0.71	1.00	10	980	1	0	0	1	4
RFA_00685	Hammerhead_1 links to Rfam database...	0.53	0.43	0.67	6	981	4	0	3	1	8
RFA_00695	Hammerhead_1 links to Rfam database...	0.43	0.43	0.43	6	7007	28	1	7	20	8
RFA_00703	Hammerhead_1 links to Rfam database...	0.43	0.43	0.43	6	4264	21	1	7	13	8
RFA_00704	Hammerhead_1 links to Rfam database...	0.67	0.57	0.80	8	980	3	0	2	1	6
RFA_00705	Hammerhead_1 links to Rfam database...	0.77	0.71	0.83	10	1023	2	0	2	0	4
RFA_00706	Hammerhead_1 links to Rfam database...	0.33	0.29	0.40	4	1025	6	0	6	0	10
RFA_00707	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	1027	8	0	8	0	14
RFA_00708	Hammerhead_1 links to Rfam database...	0.64	0.57	0.73	8	1024	3	0	3	0	6
RFA_00709	Hammerhead_1 links to Rfam database...	0.50	0.43	0.60	6	980	5	0	4	1	8
RFA_00710	Hammerhead_1 links to Rfam database...	0.70	0.50	1.00	7	983	0	0	0	0	7
RFA_00711	Hammerhead_1 links to Rfam database...	0.59	0.50	0.70	7	1025	3	0	3	0	7
RFA_00715	Hammerhead_1 links to Rfam database...	0.26	0.21	0.33	3	937	6	0	6	0	11
RFA_00716	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	939	7	0	7	0	14
RFA_00717	Hammerhead_1 links to Rfam database...	0.80	0.64	1.00	9	894	0	0	0	0	5
RFA_00730	s2m links to Rfam database...	1.00	1.00	1.00	12	891	1	0	0	1	0
RFA_00731	s2m links to Rfam database...	1.00	1.00	1.00	12	891	1	0	0	1	0
RFA_00733	s2m links to Rfam database...	1.00	1.00	1.00	12	891	1	0	0	1	0
RFA_00734	s2m links to Rfam database...	1.00	1.00	1.00	12	891	0	0	0	0	0
RFA_00736	s2m links to Rfam database...	1.00	1.00	1.00	12	891	1	0	0	1	0
RFA_00737	s2m links to Rfam database...	1.00	1.00	1.00	12	891	1	0	0	1	0
RFA_00745	s2m links to Rfam database...	1.00	1.00	1.00	12	934	1	0	0	1	0
RFA_00749	s2m links to Rfam database...	1.00	1.00	1.00	12	891	1	0	0	1	0
RFA_00758	s2m links to Rfam database...	0.96	0.92	1.00	11	892	0	0	0	0	1
RFA_00762	s2m links to Rfam database...	0.96	0.92	1.00	11	892	0	0	0	0	1
RFA_00763	s2m links to Rfam database...	1.00	1.00	1.00	12	891	1	0	0	1	0
RFA_00764	s2m links to Rfam database...	1.00	1.00	1.00	12	891	1	0	0	1	0
RFA_00765	s2m links to Rfam database...	1.00	1.00	1.00	12	891	1	0	0	1	0
RFA_00767	Corona_pk3 links to Rfam database...	0.66	0.44	1.00	8	1883	0	0	0	0	10
RFA_00768	Corona_pk3 links to Rfam database...	0.66	0.44	1.00	8	1883	0	0	0	0	10
RFA_00769	Corona_pk3 links to Rfam database...	0.54	0.56	0.53	10	1934	9	4	5	0	8
RFA_00770	Corona_pk3 links to Rfam database...	0.58	0.39	0.88	7	2008	1	0	1	0	11
RFA_00773	Corona_pk3 links to Rfam database...	0.55	0.56	0.56	10	1935	8	3	5	0	8
RFA_00779	Corona_pk3 links to Rfam database...	0.59	0.56	0.63	10	1937	6	2	4	0	8
RFA_00781	Gammaretro_CES links to Rfam database...	0.92	0.94	0.91	30	5017	3	2	1	0	2
RFA_00786	Gammaretro_CES links to Rfam database...	0.92	0.91	0.94	29	5019	2	2	0	0	3
RFA_00791	Gammaretro_CES links to Rfam database...	0.95	0.91	1.00	29	5122	1	0	0	1	3
RFA_00792	Gammaretro_CES links to Rfam database...	0.97	0.94	1.00	30	5020	0	0	0	0	2
RFA_00801	Gammaretro_CES links to Rfam database...	0.87	0.81	0.93	26	5022	3	0	2	1	6
RFA_00808	RydC links to Rfam database...	0.75	0.56	1.00	9	2007	0	0	0	0	7
RFA_00809	RydC links to Rfam database...	0.47	0.38	0.60	6	2135	4	0	4	0	10
RFA_00814	R2_retro_el links to Rfam database...	0.96	0.93	1.00	38	25162	6	0	0	6	3
RFA_00815	R2_retro_el links to Rfam database...	0.92	0.85	1.00	35	24496	1	0	0	1	6
RFA_00816	R2_retro_el links to Rfam database...	0.80	0.63	1.00	26	23194	1	0	0	1	15
RFA_00817	R2_retro_el links to Rfam database...	0.68	0.59	0.80	24	21915	9	2	4	3	17
RFA_00818	R2_retro_el links to Rfam database...	0.57	0.54	0.61	22	20265	18	8	6	4	19
RFA_00819	R2_retro_el links to Rfam database...	0.95	0.93	0.97	38	27927	15	0	1	14	3
SPR_00020	tRNA links to Rfam database...	0.92	0.85	1.00	17	2684	1	0	0	1	3
SPR_00023	tRNA links to Rfam database...	0.93	0.86	1.00	18	2832	0	0	0	0	3
SPR_00137	tRNA links to Rfam database...	0.93	0.86	1.00	18	2908	1	0	0	1	3
SPR_00273	tRNA links to Rfam database...	0.76	0.76	0.76	16	2829	5	0	5	0	5
SPR_00277	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00394	tRNA links to Rfam database...	0.62	0.57	0.67	12	3637	9	5	1	3	9
SPR_00402	tRNA links to Rfam database...	0.87	0.76	1.00	16	2540	0	0	0	0	5
SPR_00721	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	1	0	0	1	0
SPR_00816	tRNA links to Rfam database...	0.34	0.35	0.33	7	3465	17	3	11	3	13
SPR_01157	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	1	0	0	1	0
SRP_00001	Bacteria_large_SRP links to Rfam database...	0.84	0.75	0.94	30	6754	2	1	1	0	10
SRP_00002	Metazoa_SRP links to Rfam database...	0.95	0.91	0.99	93	45056	3	0	1	2	9
SRP_00006	Metazoa_SRP links to Rfam database...	0.96	0.92	1.00	93	45660	2	0	0	2	8
SRP_00008	Bacteria_small_SRP links to Rfam database...	0.94	0.88	1.00	22	2904	0	0	0	0	3
SRP_00009	Plant_SRP links to Rfam database...	0.85	0.77	0.93	79	46580	8	0	6	2	23
SRP_00011	Plant_SRP links to Rfam database...	0.81	0.77	0.86	80	46267	13	0	13	0	24
SRP_00012	Plant_SRP links to Rfam database...	0.92	0.86	0.99	87	46272	2	0	1	1	14
SRP_00015	Plant_SRP links to Rfam database...	0.92	0.86	0.99	85	46274	2	0	1	1	14
SRP_00016	Archaea_SRP links to Rfam database...	0.67	0.47	0.96	51	47842	3	0	2	1	58
SRP_00018	Fungi_SRP links to Rfam database...	0.63	0.57	0.70	46	38437	27	6	14	7	35
SRP_00019	Fungi_SRP links to Rfam database...	0.42	0.32	0.56	29	35994	24	6	17	1	62
SRP_00020	Bacteria_small_SRP links to Rfam database...	0.89	0.91	0.88	30	5531	4	1	3	0	3
SRP_00024	Bacteria_large_SRP links to Rfam database...	0.56	0.34	0.91	30	37642	3	0	3	0	57
SRP_00026	Bacteria_large_SRP links to Rfam database...	0.56	0.34	0.91	30	36823	3	0	3	0	58
SRP_00027	Bacteria_large_SRP links to Rfam database...	0.56	0.34	0.91	30	37095	3	0	3	0	57
SRP_00030	Bacteria_large_SRP links to Rfam database...	0.57	0.35	0.91	31	36822	3	0	3	0	57
SRP_00031	Bacteria_large_SRP links to Rfam database...	0.55	0.34	0.91	30	36282	3	0	3	0	59
SRP_00037	Bacteria_large_SRP links to Rfam database...	0.57	0.36	0.91	31	36551	3	0	3	0	56
SRP_00038	Bacteria_small_SRP links to Rfam database...	0.52	0.48	0.57	16	5022	12	0	12	0	17
SRP_00040	Bacteria_small_SRP links to Rfam database...	0.65	0.65	0.67	20	5535	11	1	9	1	11
SRP_00042	Bacteria_small_SRP links to Rfam database...	0.88	0.84	0.91	21	3982	3	1	1	1	4
SRP_00043	Bacteria_small_SRP links to Rfam database...	0.64	0.41	1.00	12	5038	1	0	0	1	17
SRP_00044	Bacteria_small_SRP links to Rfam database...	0.87	0.88	0.88	28	6073	5	1	3	1	4
SRP_00046	Bacteria_small_SRP links to Rfam database...	0.95	0.94	0.97	30	4722	2	0	1	1	2
SRP_00050	Metazoa_SRP links to Rfam database...	0.97	0.96	0.99	95	44754	5	0	1	4	4
SRP_00051	Bacteria_small_SRP links to Rfam database...	0.55	0.50	0.60	15	5435	10	1	9	0	15
SRP_00053	Metazoa_SRP links to Rfam database...	0.90	0.87	0.92	82	45061	16	0	7	9	12
SRP_00054	Bacteria_small_SRP links to Rfam database...	0.42	0.41	0.43	13	5535	17	0	17	0	19
SRP_00056	Bacteria_small_SRP links to Rfam database...	0.70	0.62	0.79	23	6412	6	1	5	0	14
SRP_00057	Bacteria_small_SRP links to Rfam database...	0.79	0.74	0.84	26	6297	6	1	4	1	9
SRP_00058	Bacteria_small_SRP links to Rfam database...	0.87	0.88	0.86	30	5743	6	1	4	1	4
SRP_00060	Metazoa_SRP links to Rfam database...	0.95	0.94	0.97	94	44454	8	0	3	5	6
SRP_00061	Metazoa_SRP links to Rfam database...	0.95	0.93	0.97	93	44754	9	0	3	6	7
SRP_00066	Metazoa_SRP links to Rfam database...	0.82	0.76	0.89	76	45366	11	0	9	2	24
SRP_00067	Bacteria_small_SRP links to Rfam database...	0.89	0.84	0.94	32	5744	2	1	1	0	6
SRP_00069	Fungi_SRP links to Rfam database...	0.50	0.34	0.73	29	34413	13	1	10	2	56
SRP_00072	Bacteria_small_SRP links to Rfam database...	0.95	0.90	1.00	26	6302	0	0	0	0	3
SRP_00073	Fungi_SRP links to Rfam database...	0.67	0.63	0.70	45	38996	34	4	15	15	26
SRP_00074	Bacteria_small_SRP links to Rfam database...	0.49	0.28	0.89	8	6546	1	0	1	0	21
SRP_00075	Bacteria_small_SRP links to Rfam database...	0.87	0.76	1.00	26	5539	0	0	0	0	8
SRP_00077	Bacteria_small_SRP links to Rfam database...	0.52	0.27	1.00	10	6660	0	0	0	0	27
SRP_00079	Plant_SRP links to Rfam database...	0.73	0.67	0.79	59	41830	21	3	13	5	29
SRP_00081	Bacteria_small_SRP links to Rfam database...	0.71	0.74	0.68	23	5531	11	1	10	0	8
SRP_00084	Bacteria_small_SRP links to Rfam database...	0.90	0.91	0.89	31	5425	4	1	3	0	3
SRP_00085	Plant_SRP links to Rfam database...	0.88	0.78	0.99	79	45371	3	0	1	2	22
SRP_00086	Metazoa_SRP links to Rfam database...	0.93	0.93	0.94	93	44154	10	0	6	4	7
SRP_00087	Fungi_SRP links to Rfam database...	0.16	0.17	0.16	10	37338	59	18	35	6	48
SRP_00088	Bacteria_large_SRP links to Rfam database...	0.56	0.35	0.91	31	34157	3	0	3	0	58
SRP_00089	Bacteria_large_SRP links to Rfam database...	0.55	0.33	0.91	30	35745	3	0	3	0	60
SRP_00090	Bacteria_large_SRP links to Rfam database...	0.56	0.34	0.91	31	35477	3	0	3	0	59
SRP_00091	Fungi_SRP links to Rfam database...	0.71	0.68	0.73	65	52886	26	4	20	2	30
SRP_00094	Bacteria_small_SRP links to Rfam database...	0.84	0.88	0.81	21	4069	5	1	4	0	3
SRP_00095	Bacteria_small_SRP links to Rfam database...	0.85	0.88	0.81	22	3978	5	1	4	0	3
SRP_00098	Bacteria_small_SRP links to Rfam database...	0.64	0.59	0.69	22	6409	11	1	9	1	15
SRP_00099	Plant_SRP links to Rfam database...	0.65	0.55	0.78	52	44783	16	3	12	1	43
SRP_00102	Metazoa_SRP links to Rfam database...	0.82	0.79	0.85	80	44457	17	5	9	3	21
SRP_00103	Metazoa_SRP links to Rfam database...	0.85	0.81	0.89	83	45358	12	1	9	2	19
SRP_00104	Fungi_SRP links to Rfam database...	0.36	0.36	0.35	25	34382	49	5	41	3	44
SRP_00105	Bacteria_small_SRP links to Rfam database...	0.87	0.76	1.00	26	5539	0	0	0	0	8
SRP_00106	Bacteria_large_SRP links to Rfam database...	0.57	0.44	0.73	11	5238	6	2	2	2	14
SRP_00107	Bacteria_small_SRP links to Rfam database...	0.43	0.47	0.39	9	3632	14	2	12	0	10
SRP_00117	Metazoa_SRP links to Rfam database...	0.96	0.92	1.00	94	45357	2	0	0	2	8
SRP_00121	Bacteria_small_SRP links to Rfam database...	0.81	0.76	0.86	19	4256	4	0	3	1	6
SRP_00123	Metazoa_SRP links to Rfam database...	0.73	0.56	0.94	51	36531	3	0	3	0	40
SRP_00124	Metazoa_SRP links to Rfam database...	0.39	0.18	0.88	15	37111	2	0	2	0	70
SRP_00127	Fungi_SRP links to Rfam database...	0.73	0.71	0.76	84	72280	27	5	21	1	35
SRP_00128	Bacteria_small_SRP links to Rfam database...	0.84	0.81	0.88	29	6753	5	1	3	1	7
SRP_00130	Archaea_SRP links to Rfam database...	0.57	0.38	0.86	37	49727	7	0	6	1	60
SRP_00132	Bacteria_small_SRP links to Rfam database...	0.70	0.72	0.68	21	4820	13	0	10	3	8
SRP_00134	Bacteria_large_SRP links to Rfam database...	0.65	0.66	0.66	19	5966	13	0	10	3	10
SRP_00136	Fungi_SRP links to Rfam database...	0.39	0.37	0.41	26	44190	43	11	26	6	45
SRP_00137	Bacteria_small_SRP links to Rfam database...	0.75	0.84	0.68	21	4155	10	4	6	0	4
SRP_00141	Bacteria_small_SRP links to Rfam database...	0.83	0.76	0.91	31	6294	4	1	2	1	10
SRP_00142	Archaea_SRP links to Rfam database...	0.80	0.73	0.87	68	45978	12	0	10	2	25
SRP_00143	Archaea_SRP links to Rfam database...	0.83	0.75	0.93	76	49688	10	0	6	4	25
SRP_00144	Archaea_SRP links to Rfam database...	0.86	0.79	0.94	74	46586	8	0	5	3	20
SRP_00145	Bacteria_small_SRP links to Rfam database...	0.90	0.85	0.94	34	6292	2	1	1	0	6
SRP_00146	Bacteria_small_SRP links to Rfam database...	0.89	0.86	0.91	31	5219	3	1	2	0	5
SRP_00148	Fungi_SRP links to Rfam database...	0.47	0.43	0.52	37	50015	44	2	32	10	50
SRP_00152	Plant_SRP links to Rfam database...	0.93	0.89	0.98	92	45659	3	0	2	1	11
SRP_00153	Plant_SRP links to Rfam database...	0.89	0.83	0.95	89	46877	6	0	5	1	18
SRP_00157	Fungi_SRP links to Rfam database...	0.32	0.32	0.32	23	44182	54	14	34	6	49
SRP_00158	Fungi_SRP links to Rfam database...	0.34	0.35	0.33	40	124131	85	33	47	5	75
SRP_00160	Fungi_SRP links to Rfam database...	0.38	0.28	0.51	37	86248	35	0	35	0	93
SRP_00161	Bacteria_small_SRP links to Rfam database...	0.89	0.91	0.87	20	2827	3	0	3	0	2
SRP_00162	Bacteria_small_SRP links to Rfam database...	0.89	0.91	0.88	21	2902	4	0	3	1	2
SRP_00163	Bacteria_small_SRP links to Rfam database...	0.91	0.92	0.89	24	3459	3	0	3	0	2
SRP_00164	Bacteria_small_SRP links to Rfam database...	0.82	0.74	0.90	26	6874	4	1	2	1	9
SRP_00170	Bacteria_small_SRP links to Rfam database...	0.94	0.96	0.92	24	4069	3	1	1	1	1
SRP_00171	Metazoa_SRP links to Rfam database...	0.56	0.45	0.69	40	45393	18	1	17	0	48
SRP_00173	Bacteria_large_SRP links to Rfam database...	0.54	0.32	0.91	29	38194	3	0	3	0	61
SRP_00174	Bacteria_large_SRP links to Rfam database...	0.56	0.35	0.91	30	38748	3	0	3	0	56
SRP_00175	Fungi_SRP links to Rfam database...	0.32	0.23	0.46	19	44510	27	3	19	5	65
SRP_00178	Plant_SRP links to Rfam database...	0.88	0.81	0.95	83	45666	6	0	4	2	19
SRP_00179	Plant_SRP links to Rfam database...	0.89	0.81	0.98	85	45969	6	0	2	4	20
SRP_00181	Plant_SRP links to Rfam database...	0.80	0.73	0.88	74	45972	12	0	10	2	28
SRP_00182	Plant_SRP links to Rfam database...	0.83	0.75	0.93	76	45974	8	0	6	2	25
SRP_00184	Plant_SRP links to Rfam database...	0.78	0.70	0.86	70	45975	15	0	11	4	30
SRP_00188	Plant_SRP links to Rfam database...	0.84	0.76	0.94	60	31061	6	0	4	2	19
SRP_00194	Bacteria_small_SRP links to Rfam database...	0.74	0.76	0.73	16	3218	6	0	6	0	5
SRP_00197	Archaea_SRP links to Rfam database...	0.70	0.51	0.96	52	49401	2	0	2	0	49
SRP_00198	Archaea_SRP links to Rfam database...	0.72	0.54	0.97	56	50982	2	0	2	0	47
SRP_00199	Archaea_SRP links to Rfam database...	0.68	0.50	0.95	52	50985	3	0	3	0	53
SRP_00200	Bacteria_small_SRP links to Rfam database...	0.81	0.78	0.85	28	6870	5	1	4	0	8
SRP_00201	Archaea_SRP links to Rfam database...	0.71	0.52	0.97	58	47835	3	0	2	1	53
SRP_00202	Archaea_SRP links to Rfam database...	0.77	0.62	0.95	73	54208	6	0	4	2	44
SRP_00203	Archaea_SRP links to Rfam database...	0.71	0.61	0.83	64	48751	18	0	13	5	41
SRP_00204	Archaea_SRP links to Rfam database...	0.73	0.59	0.91	60	49075	7	0	6	1	42
SRP_00206	Archaea_SRP links to Rfam database...	0.79	0.65	0.97	70	47823	3	0	2	1	38
SRP_00208	Archaea_SRP links to Rfam database...	0.81	0.66	0.99	67	46597	2	0	1	1	34
SRP_00209	Bacteria_small_SRP links to Rfam database...	0.95	0.96	0.93	26	4628	2	1	1	0	1
SRP_00213	Bacteria_small_SRP links to Rfam database...	0.94	0.96	0.92	24	4160	2	1	1	0	1
SRP_00215	Bacteria_small_SRP links to Rfam database...	0.83	0.80	0.87	20	3217	3	0	3	0	5
SRP_00216	Bacteria_small_SRP links to Rfam database...	0.91	0.89	0.92	24	3377	3	1	1	1	3
SRP_00217	Bacteria_small_SRP links to Rfam database...	0.94	0.96	0.92	23	3296	3	0	2	1	1
SRP_00219	Bacteria_small_SRP links to Rfam database...	0.94	0.96	0.92	22	3297	3	0	2	1	1
SRP_00222	Bacteria_small_SRP links to Rfam database...	0.94	0.96	0.92	24	3055	3	1	1	1	1
SRP_00227	Bacteria_small_SRP links to Rfam database...	0.92	0.94	0.91	29	5119	3	1	2	0	2
SRP_00228	Metazoa_SRP links to Rfam database...	0.95	0.93	0.98	88	45361	8	0	2	6	7
SRP_00229	Bacteria_small_SRP links to Rfam database...	0.37	0.37	0.37	10	5226	17	5	12	0	17
SRP_00230	Fungi_SRP links to Rfam database...	0.68	0.58	0.81	52	39557	14	0	12	2	38
SRP_00231	Bacteria_small_SRP links to Rfam database...	0.91	0.91	0.91	31	5426	3	1	2	0	3
SRP_00233	Bacteria_small_SRP links to Rfam database...	0.95	0.94	0.97	31	5119	1	0	1	0	2
SRP_00234	Bacteria_large_SRP links to Rfam database...	0.55	0.34	0.91	29	36283	3	0	3	0	57
SRP_00239	Plant_SRP links to Rfam database...	0.54	0.45	0.64	42	50337	25	2	22	1	51
SRP_00240	Plant_SRP links to Rfam database...	0.83	0.75	0.93	76	48123	8	0	6	2	26
SRP_00241	Plant_SRP links to Rfam database...	0.65	0.51	0.82	42	46005	10	0	9	1	40
SRP_00243	Bacteria_small_SRP links to Rfam database...	0.82	0.68	1.00	21	5130	1	0	0	1	10
SRP_00244	Bacteria_small_SRP links to Rfam database...	0.83	0.74	0.94	29	6872	3	1	1	1	10
SRP_00247	Metazoa_SRP links to Rfam database...	0.59	0.57	0.62	50	47197	34	4	27	3	37
SRP_00250	Bacteria_small_SRP links to Rfam database...	0.84	0.81	0.88	29	6753	4	1	3	0	7
SRP_00251	Bacteria_small_SRP links to Rfam database...	0.81	0.78	0.85	28	6988	5	1	4	0	8
SRP_00252	Metazoa_SRP links to Rfam database...	0.56	0.52	0.61	46	49066	31	5	24	2	43
SRP_00253	Metazoa_SRP links to Rfam database...	0.63	0.63	0.63	57	49364	39	6	28	5	33
SRP_00254	Fungi_SRP links to Rfam database...	0.44	0.39	0.49	24	32336	30	7	18	5	37
SRP_00255	Archaea_SRP links to Rfam database...	0.55	0.31	0.97	29	47556	3	0	1	2	65
SRP_00257	Metazoa_SRP links to Rfam database...	0.83	0.74	0.93	80	50954	8	3	3	2	28
SRP_00260	Metazoa_SRP links to Rfam database...	0.76	0.74	0.78	74	47800	23	4	17	2	26
SRP_00265	Fungi_SRP links to Rfam database...	0.45	0.38	0.54	28	41276	34	7	17	10	45
SRP_00266	Bacteria_small_SRP links to Rfam database...	0.59	0.55	0.64	16	4631	10	1	8	1	13
SRP_00267	Metazoa_SRP links to Rfam database...	0.94	0.93	0.96	89	44458	8	0	4	4	7
SRP_00268	Bacteria_small_SRP links to Rfam database...	0.95	0.96	0.93	26	4158	2	1	1	0	1
SRP_00269	Bacteria_small_SRP links to Rfam database...	0.95	0.91	1.00	30	5020	0	0	0	0	3
SRP_00270	Bacteria_small_SRP links to Rfam database...	0.95	0.94	0.97	29	4626	1	0	1	0	2
SRP_00271	Bacteria_small_SRP links to Rfam database...	0.94	0.92	0.96	22	3217	1	0	1	0	2
SRP_00273	Bacteria_small_SRP links to Rfam database...	0.82	0.75	0.91	30	6753	4	1	2	1	10
SRP_00274	Bacteria_small_SRP links to Rfam database...	0.85	0.79	0.91	30	6870	4	1	2	1	8
SRP_00276	Archaea_SRP links to Rfam database...	0.82	0.69	0.97	76	50643	3	0	2	1	34
SRP_00278	Archaea_SRP links to Rfam database...	0.57	0.34	0.95	36	46018	3	0	2	1	69
SRP_00282	Metazoa_SRP links to Rfam database...	0.34	0.40	0.29	25	43278	70	20	42	8	38
SRP_00285	Bacteria_small_SRP links to Rfam database...	0.95	0.93	0.97	28	3712	1	0	1	0	2
SRP_00290	Fungi_SRP links to Rfam database...	0.63	0.58	0.68	78	100462	39	2	34	3	57
SRP_00295	Bacteria_small_SRP links to Rfam database...	0.86	0.79	0.94	30	6871	3	1	1	1	8
SRP_00299	Metazoa_SRP links to Rfam database...	0.91	0.83	1.00	82	44171	3	0	0	3	17
SRP_00300	Metazoa_SRP links to Rfam database...	0.96	0.93	0.99	87	44165	4	0	1	3	7
SRP_00301	Fungi_SRP links to Rfam database...	0.64	0.57	0.72	49	32572	23	2	17	4	37
SRP_00302	Fungi_SRP links to Rfam database...	0.33	0.26	0.42	21	41566	34	3	26	5	60
SRP_00303	Bacteria_small_SRP links to Rfam database...	0.76	0.75	0.77	24	6639	8	1	6	1	8
SRP_00308	Bacteria_large_SRP links to Rfam database...	0.56	0.34	0.91	30	36282	3	0	3	0	58
SRP_00310	Bacteria_small_SRP links to Rfam database...	0.87	0.87	0.87	20	2903	3	0	3	0	3
SRP_00312	Bacteria_small_SRP links to Rfam database...	0.95	0.96	0.93	26	4158	2	1	1	0	1
SRP_00315	Bacteria_small_SRP links to Rfam database...	0.87	0.87	0.87	20	2903	3	0	3	0	3
SRP_00317	Metazoa_SRP links to Rfam database...	0.94	0.91	0.97	89	45058	10	0	3	7	9
SRP_00318	Bacteria_small_SRP links to Rfam database...	0.87	0.87	0.87	20	2980	3	0	3	0	3
SRP_00321	Archaea_SRP links to Rfam database...	0.70	0.52	0.93	56	47526	5	0	4	1	52
SRP_00322	Archaea_SRP links to Rfam database...	0.87	0.82	0.94	89	48421	7	0	6	1	20
SRP_00323	Archaea_SRP links to Rfam database...	0.88	0.83	0.93	89	47182	10	0	7	3	18
SRP_00324	Bacteria_small_SRP links to Rfam database...	0.53	0.34	0.83	10	5344	2	0	2	0	19
SRP_00325	Bacteria_small_SRP links to Rfam database...	0.95	0.94	0.97	31	4339	1	0	1	0	2
SRP_00326	Bacteria_small_SRP links to Rfam database...	0.95	0.94	0.97	29	5020	1	0	1	0	2
SRP_00328	Metazoa_SRP links to Rfam database...	0.67	0.66	0.69	56	39540	29	7	18	4	29
SRP_00329	Metazoa_SRP links to Rfam database...	0.64	0.61	0.68	52	39826	28	4	21	3	33
SRP_00330	Archaea_SRP links to Rfam database...	0.78	0.65	0.94	62	50020	6	0	4	2	33
SRP_00331	Metazoa_SRP links to Rfam database...	0.60	0.53	0.69	46	37608	21	1	20	0	41
SRP_00332	Archaea_SRP links to Rfam database...	0.85	0.75	0.96	79	50321	4	0	3	1	27
SRP_00333	Bacteria_small_SRP links to Rfam database...	0.94	0.91	0.97	31	5119	1	0	1	0	3
SRP_00335	Bacteria_large_SRP links to Rfam database...	0.51	0.44	0.59	17	35216	17	7	5	5	22
SRP_00337	Bacteria_large_SRP links to Rfam database...	0.55	0.33	0.91	30	35478	4	0	3	1	61
SRP_00338	Bacteria_small_SRP links to Rfam database...	0.96	0.94	0.97	34	5425	1	0	1	0	2
SRP_00339	Archaea_SRP links to Rfam database...	0.86	0.84	0.89	79	44462	13	0	10	3	15
SRP_00340	Metazoa_SRP links to Rfam database...	0.61	0.39	0.97	32	41295	1	0	1	0	50
SRP_00341	Bacteria_small_SRP links to Rfam database...	0.46	0.39	0.55	12	4731	10	0	10	0	19
SRP_00342	Bacteria_small_SRP links to Rfam database...	0.66	0.44	1.00	11	3994	0	0	0	0	14
SRP_00347	Metazoa_SRP links to Rfam database...	0.94	0.92	0.97	88	46574	8	0	3	5	8
SRP_00350	Bacteria_small_SRP links to Rfam database...	0.67	0.59	0.76	16	3895	5	3	2	0	11
SRP_00356	Bacteria_small_SRP links to Rfam database...	0.78	0.70	0.88	21	5026	3	0	3	0	9
SRP_00357	Bacteria_small_SRP links to Rfam database...	0.90	0.86	0.94	31	5323	3	1	1	1	5
SRP_00358	Bacteria_small_SRP links to Rfam database...	0.90	0.86	0.94	30	6296	3	1	1	1	5
SRP_00361	Plant_SRP links to Rfam database...	0.82	0.81	0.82	73	41816	24	2	14	8	17
SRP_00363	Bacteria_small_SRP links to Rfam database...	0.95	0.97	0.94	29	4722	4	0	2	2	1
SRP_00365	Bacteria_small_SRP links to Rfam database...	0.92	0.89	0.96	24	3378	1	0	1	0	3
SRP_00367	Bacteria_small_SRP links to Rfam database...	0.88	0.83	0.94	29	6755	2	1	1	0	6
SRP_00368	Metazoa_SRP links to Rfam database...	0.91	0.89	0.94	87	43863	9	0	6	3	11
SRP_00369	Bacteria_small_SRP links to Rfam database...	0.86	0.80	0.93	28	5748	2	1	1	0	7
SRP_00371	Fungi_SRP links to Rfam database...	0.68	0.60	0.77	49	36251	16	2	13	1	33
SRP_00383	Bacteria_small_SRP links to Rfam database...	0.87	0.83	0.91	20	3218	2	0	2	0	4
TMR_00173	tmRNA links to Rfam database...	0.58	0.33	1.00	14	42181	0	0	0	0	28
TMR_00357	tmRNA links to Rfam database...	0.44	0.23	0.84	21	83003	4	0	4	0	71
TMR_00601	tmRNA links to Rfam database...	0.80	0.69	0.94	29	58965	10	0	2	8	13
TMR_00696	tmRNA links to Rfam database...	0.46	0.28	0.76	32	85036	10	2	8	0	82

^top

Performance of RSpredict(seed) - scored lower in this pairwise comparison

1. Total counts & total scores for RSpredict(seed)

Total Base Pair Counts
Total TP	4876
Total TN	24133896
Total FP	4804
Total FP CONTRA	400
Total FP INCONS	3921
Total FP COMP	483
Total FN	41430

Total Scores
MCC	0.236
Average MCC ± 95% Confidence Intervals	0.223 ± 0.023
Sensitivity	0.105
Positive Predictive Value	0.530
Nr of predictions	632

^top

2. Individual counts for RSpredict(seed) [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00001	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	34191	0	0	0	0	75
ASE_00002	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	35511	0	0	0	0	73
ASE_00004	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	47894	2	0	1	1	97
ASE_00005	RNaseP_bact_a links to Rfam database...	0.14	0.03	0.57	4	57963	3	0	3	0	113
ASE_00006	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	47583	3	0	3	0	93
ASE_00007	RNaseP_bact_a links to Rfam database...	0.16	0.05	0.56	5	59676	4	0	4	0	105
ASE_00009	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	26106	0	0	0	0	67
ASE_00010	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	49754	16	4	12	0	82
ASE_00012	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	73914	6	0	6	0	123
ASE_00014	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	54285	0	0	0	0	106
ASE_00017	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	51038	2	0	2	0	64
ASE_00018	RNaseP_bact_a links to Rfam database...	0.13	0.04	0.35	6	80584	11	0	11	0	128
ASE_00020	RNaseP_bact_a links to Rfam database...	0.04	0.01	0.25	1	73916	3	0	3	0	125
ASE_00021	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	104189	7	1	6	0	160
ASE_00022	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	83008	21	3	17	1	124
ASE_00023	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	84246	9	0	9	0	127
ASE_00025	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	78605	1	0	1	0	71
ASE_00026	RNaseP_bact_a links to Rfam database...	0.07	0.02	0.25	2	59677	6	1	5	0	108
ASE_00028	RNaseP_bact_b links to Rfam database...	0.02	0.01	0.05	1	84646	22	5	14	3	125
ASE_00029	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	83024	4	0	4	0	122
ASE_00030	RNaseP_bact_a links to Rfam database...	0.11	0.03	0.44	4	85482	5	0	5	0	141
ASE_00031	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	86724	12	2	10	0	126
ASE_00032	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	80196	5	0	4	1	118
ASE_00033	RNaseP_bact_a links to Rfam database...	0.12	0.03	0.44	4	64971	5	0	5	0	117
ASE_00035	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	70496	6	0	4	2	118
ASE_00036	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	75845	10	0	10	0	132
ASE_00037	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	59335	5	0	5	0	110
ASE_00038	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	53623	5	0	5	0	101
ASE_00040	RNaseP_bact_a links to Rfam database...	0.02	0.01	0.07	1	78989	13	0	13	0	132
ASE_00041	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	57624	6	0	6	0	108
ASE_00042	RNaseP_bact_a links to Rfam database...	0.09	0.03	0.29	4	90086	10	0	10	0	141
ASE_00044	RNaseP_bact_a links to Rfam database...	0.03	0.01	0.10	1	54605	9	0	9	0	104
ASE_00045	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	47271	9	0	7	2	80
ASE_00046	RNaseP_bact_a links to Rfam database...	0.11	0.03	0.43	3	50396	4	0	4	0	100
ASE_00047	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	74303	2	0	2	0	130
ASE_00052	RNaseP_bact_a links to Rfam database...	0.18	0.04	0.71	5	61418	2	0	2	0	107
ASE_00053	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	79398	3	0	3	0	133
ASE_00057	RNaseP_bact_a links to Rfam database...	0.05	0.01	0.17	2	82203	11	0	10	1	132
ASE_00064	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	45448	3	0	3	0	89
ASE_00066	RNaseP_bact_a links to Rfam database...	0.16	0.03	0.80	4	72385	1	0	1	0	126
ASE_00068	RNaseP_bact_a links to Rfam database...	0.05	0.01	0.25	1	37671	3	0	3	0	84
ASE_00069	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	83022	6	1	5	0	140
ASE_00074	RNaseP_bact_a links to Rfam database...	0.21	0.07	0.67	8	67884	4	0	4	0	111
ASE_00075	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	108804	8	0	7	1	162
ASE_00076	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	68256	9	0	9	0	118
ASE_00077	RNaseP_bact_a links to Rfam database...	0.09	0.02	0.33	2	45144	4	1	3	0	84
ASE_00078	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	43071	0	0	0	0	83
ASE_00079	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	55606	5	0	5	0	100
ASE_00080	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	71623	9	2	6	1	123
ASE_00081	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	49768	2	0	2	0	97
ASE_00082	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	70494	6	0	6	0	116
ASE_00083	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	62477	5	0	4	1	110
ASE_00084	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	53625	4	0	3	1	99
ASE_00087	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	88406	4	0	4	0	144
ASE_00090	RNaseP_bact_a links to Rfam database...	0.04	0.01	0.17	1	55605	5	0	5	0	100
ASE_00092	RNaseP_bact_a links to Rfam database...	0.04	0.01	0.20	1	63541	4	0	4	0	112
ASE_00096	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	63542	4	0	4	0	115
ASE_00099	RNaseP_bact_a links to Rfam database...	0.20	0.07	0.62	8	64607	5	0	5	0	112
ASE_00100	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	82213	2	1	1	0	76
ASE_00102	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	117845	10	0	10	0	166
ASE_00104	RNaseP_bact_a links to Rfam database...	0.10	0.03	0.31	4	64248	9	0	9	0	115
ASE_00105	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	64254	7	0	7	0	111
ASE_00107	RNaseP_bact_a links to Rfam database...	0.13	0.03	0.50	4	73145	4	0	4	0	123
ASE_00108	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	46969	2	2	0	0	63
ASE_00111	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	50084	2	2	0	0	57
ASE_00112	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	75461	5	1	4	0	116
ASE_00114	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	45440	14	0	11	3	77
ASE_00115	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	54615	0	0	0	0	101
ASE_00116	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	31626	0	0	0	0	66
ASE_00118	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	60722	6	0	4	2	102
ASE_00119	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	62834	3	0	1	2	108
ASE_00120	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	46970	1	0	1	0	94
ASE_00121	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	45150	0	0	0	0	92
ASE_00122	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	43360	6	0	5	1	88
ASE_00123	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	38499	4	0	4	0	85
ASE_00125	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	39337	3	0	3	0	88
ASE_00126	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	40468	2	0	2	0	82
ASE_00128	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	53297	4	1	3	0	100
ASE_00129	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	62821	18	1	13	4	111
ASE_00131	RNaseP_bact_a links to Rfam database...	0.30	0.15	0.59	13	39318	15	0	9	6	72
ASE_00132	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	50401	3	0	2	1	95
ASE_00134	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	50397	6	0	6	0	95
ASE_00135	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	63187	3	0	3	0	109
ASE_00136	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	48202	4	0	3	1	92
ASE_00137	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	48512	4	0	4	0	98
ASE_00138	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	40467	3	0	3	0	81
ASE_00139	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	54280	5	0	5	0	104
ASE_00140	RNaseP_bact_a links to Rfam database...	0.04	0.01	0.20	1	70871	4	1	3	0	124
ASE_00142	RNaseP_bact_a links to Rfam database...	0.06	0.02	0.25	2	67153	6	0	6	0	120
ASE_00145	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	70125	0	0	0	0	111
ASE_00146	RNaseP_bact_a links to Rfam database...	0.09	0.02	0.38	3	70868	5	0	5	0	121
ASE_00148	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	112574	1	1	0	0	154
ASE_00151	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	52000	4	1	2	1	98
ASE_00153	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	57629	1	1	0	0	73
ASE_00154	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	65341	0	0	0	0	107
ASE_00155	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	93528	0	0	0	0	142
ASE_00161	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	53619	12	2	7	3	87
ASE_00163	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	53297	4	1	3	0	93
ASE_00165	RNaseP_bact_a links to Rfam database...	0.11	0.02	0.67	2	52972	1	0	1	0	99
ASE_00168	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	60725	1	1	0	0	64
ASE_00169	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	57287	4	0	4	0	107
ASE_00170	RNaseP_bact_a links to Rfam database...	0.04	0.01	0.17	1	48822	5	0	5	0	92
ASE_00171	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	48513	4	0	3	1	94
ASE_00172	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	58988	8	0	8	0	106
ASE_00174	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	61075	0	0	0	0	109
ASE_00175	RNaseP_bact_a links to Rfam database...	0.05	0.02	0.14	2	60017	14	0	12	2	105
ASE_00176	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	60020	11	3	8	0	110
ASE_00179	RNaseP_bact_a links to Rfam database...	0.09	0.04	0.23	3	44240	12	1	9	2	81
ASE_00180	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	51355	5	3	2	0	100
ASE_00181	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	57627	3	0	3	0	106
ASE_00182	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	84254	1	0	1	0	136
ASE_00184	RNaseP_bact_a links to Rfam database...	0.09	0.03	0.30	3	54605	7	0	7	0	99
ASE_00185	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	73531	5	0	5	0	128
ASE_00186	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	78994	9	1	8	0	132
ASE_00187	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	68630	5	3	2	0	115
ASE_00189	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	63180	13	1	9	3	102
ASE_00190	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	45437	15	3	11	1	90
ASE_00191	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	29646	0	0	0	0	61
ASE_00192	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	84653	14	3	10	1	133
ASE_00194	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	73523	15	0	13	2	119
ASE_00196	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	31626	0	0	0	0	75
ASE_00197	RNaseP_bact_a links to Rfam database...	0.03	0.01	0.13	1	89245	7	0	7	0	144
ASE_00198	RNaseP_bact_a links to Rfam database...	0.15	0.04	0.57	4	52643	3	0	3	0	98
ASE_00203	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46663	2	0	2	0	96
ASE_00204	RNaseP_bact_b links to Rfam database...	0.06	0.03	0.13	3	67873	20	6	14	0	109
ASE_00205	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	46056	0	0	0	0	90
ASE_00209	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	43071	0	0	0	0	88
ASE_00210	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	27261	0	0	0	0	65
ASE_00212	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	93956	5	0	5	0	148
ASE_00213	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	27261	0	0	0	0	66
ASE_00214	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	56271	9	0	9	0	103
ASE_00215	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	48513	3	0	3	0	99
ASE_00216	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	39338	2	0	2	0	82
ASE_00217	RNaseP_bact_a links to Rfam database...	0.16	0.04	0.57	4	40463	3	0	3	0	86
ASE_00221	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	64617	3	0	3	0	117
ASE_00222	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	112101	0	0	0	0	157
ASE_00227	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	78993	10	3	7	0	133
ASE_00228	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46967	4	0	4	0	86
ASE_00229	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	42482	4	1	3	0	87
ASE_00231	RNaseP_bact_a links to Rfam database...	0.07	0.02	0.22	2	47886	8	2	5	1	94
ASE_00232	RNaseP_bact_a links to Rfam database...	0.09	0.02	0.33	2	38497	4	0	4	0	82
ASE_00234	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	75463	3	1	2	0	129
ASE_00237	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	45751	2	0	2	0	56
ASE_00238	RNaseP_bact_a links to Rfam database...	0.07	0.01	0.50	1	64259	1	0	1	0	113
ASE_00240	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46660	5	0	5	0	93
ASE_00241	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	43954	2	0	2	0	87
ASE_00242	RNaseP_bact_a links to Rfam database...	0.12	0.04	0.40	4	61065	6	0	6	0	108
ASE_00245	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	55278	2	0	0	2	78
ASE_00246	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	48202	3	0	3	0	67
ASE_00247	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	54284	1	1	0	0	64
ASE_00248	RNaseP_bact_a links to Rfam database...	0.11	0.03	0.43	3	62474	4	0	4	0	111
ASE_00250	RNaseP_bact_a links to Rfam database...	0.08	0.02	0.30	3	78993	7	0	7	0	128
ASE_00251	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	17766	0	0	0	0	43
ASE_00252	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	115437	4	0	3	1	168
ASE_00254	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	36850	6	1	5	0	82
ASE_00255	RNaseP_bact_a links to Rfam database...	0.12	0.03	0.50	4	74683	4	0	4	0	126
ASE_00257	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	51035	5	0	5	0	97
ASE_00258	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	26796	0	0	0	0	54
ASE_00259	RNaseP_bact_a links to Rfam database...	0.11	0.02	0.50	3	73147	3	0	3	0	118
ASE_00263	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	70490	10	0	10	0	120
ASE_00264	RNaseP_nuc links to Rfam database...	0.12	0.02	0.67	2	49138	3	0	1	2	98
ASE_00267	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	45145	6	0	5	1	88
ASE_00270	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	72388	3	0	2	1	128
ASE_00274	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	55608	3	0	3	0	103
ASE_00277	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	48203	2	0	2	0	91
ASE_00279	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	53299	2	0	2	0	101
ASE_00280	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	52001	2	0	2	0	98
ASE_00281	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	44548	3	0	3	0	88
ASE_00282	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	77811	4	0	4	0	127
ASE_00283	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	61769	7	0	7	0	107
ASE_00284	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	58309	2	1	1	0	108
ASE_00285	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	69000	6	0	6	0	122
ASE_00286	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46659	6	0	6	0	92
ASE_00287	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	54939	7	0	7	0	103
ASE_00288	RNaseP_bact_a links to Rfam database...	0.10	0.02	0.50	2	46052	2	0	2	0	91
ASE_00289	RNaseP_bact_a links to Rfam database...	0.05	0.01	0.18	2	101014	10	1	8	1	155
ASE_00292	RNaseP_bact_a links to Rfam database...	0.15	0.04	0.50	6	81798	6	0	6	0	132
ASE_00294	RNaseP_bact_a links to Rfam database...	0.08	0.02	0.31	4	114468	9	0	9	0	167
ASE_00295	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	73909	11	0	11	0	131
ASE_00296	RNaseP_bact_a links to Rfam database...	0.09	0.03	0.29	4	91792	10	1	9	0	141
ASE_00297	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	52972	3	0	3	0	98
ASE_00298	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	67525	3	1	2	0	113
ASE_00299	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	49451	5	0	4	1	100
ASE_00303	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	67895	1	0	1	0	95
ASE_00305	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	54596	22	4	15	3	85
ASE_00313	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	62479	4	0	2	2	89
ASE_00316	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	107880	0	0	0	0	98
ASE_00318	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	80184	21	0	16	5	118
ASE_00321	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	54597	21	1	17	3	88
ASE_00327	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	57285	6	1	5	0	89
ASE_00328	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	72760	15	0	11	4	112
ASE_00329	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	40755	0	0	0	0	63
ASE_00330	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	56277	3	0	3	0	90
ASE_00332	RNaseP_bact_a links to Rfam database...	0.15	0.04	0.50	6	81798	6	0	6	0	132
ASE_00335	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	75451	19	1	14	4	116
ASE_00337	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	39340	2	0	0	2	71
ASE_00338	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	66427	3	0	3	0	98
ASE_00339	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	80192	8	0	8	0	119
ASE_00340	RNaseP_bact_a links to Rfam database...	0.04	0.01	0.14	1	46049	6	0	6	0	84
ASE_00342	RNaseP_bact_a links to Rfam database...	0.09	0.03	0.30	3	62471	7	0	7	0	112
ASE_00343	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	83429	8	1	6	1	113
ASE_00346	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	48205	0	0	0	0	97
ASE_00353	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	57968	2	0	2	0	107
ASE_00359	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	42778	0	0	0	0	80
ASE_00360	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	29403	0	0	0	0	65
ASE_00361	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	75463	3	0	3	0	127
ASE_00362	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	48200	5	0	5	0	91
ASE_00363	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	51354	6	0	6	0	94
ASE_00364	RNaseP_bact_a links to Rfam database...	0.11	0.02	0.67	2	54282	1	0	1	0	103
ASE_00366	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	58652	1	0	1	0	98
ASE_00367	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	43067	5	0	4	1	86
ASE_00369	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	55939	6	1	5	0	107
ASE_00370	RNaseP_bact_a links to Rfam database...	0.10	0.02	0.40	2	41900	3	0	3	0	82
ASE_00372	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	51997	6	0	6	0	100
ASE_00374	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	44843	7	0	7	0	88
ASE_00375	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	60373	5	0	5	0	110
ASE_00376	RNaseP_bact_a links to Rfam database...	0.04	0.01	0.17	1	56947	5	0	5	0	104
ASE_00377	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	57628	2	0	2	0	107
ASE_00379	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46050	7	0	6	1	89
ASE_00380	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	54942	4	2	2	0	99
ASE_00382	RNaseP_bact_a links to Rfam database...	0.06	0.01	0.33	1	41902	3	0	2	1	83
ASE_00383	RNaseP_bact_a links to Rfam database...	0.06	0.01	0.33	1	54612	2	0	2	0	104
ASE_00384	RNaseP_bact_a links to Rfam database...	0.05	0.01	0.20	1	48511	4	0	4	0	91
ASE_00385	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	41902	3	0	3	0	81
ASE_00386	RNaseP_bact_a links to Rfam database...	0.10	0.03	0.33	3	50394	7	0	6	1	93
ASE_00387	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	55940	5	0	5	0	104
ASE_00388	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	45749	5	0	4	1	89
ASE_00390	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	42192	4	0	3	1	85
ASE_00393	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	47891	4	0	4	0	93
ASE_00394	RNaseP_bact_a links to Rfam database...	0.03	0.01	0.07	1	46956	15	0	14	1	92
ASE_00395	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	41612	6	0	4	2	84
ASE_00396	RNaseP_bact_a links to Rfam database...	0.15	0.04	0.60	3	41611	2	0	2	0	80
ASE_00397	RNaseP_bact_a links to Rfam database...	0.04	0.01	0.17	1	54609	5	1	4	0	104
ASE_00398	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	55934	11	0	11	0	104
ASE_00400	RNaseP_bact_a links to Rfam database...	0.08	0.02	0.33	2	57964	4	3	1	0	104
ASE_00401	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	77015	13	0	13	0	126
ASE_00402	RNaseP_bact_a links to Rfam database...	0.05	0.01	0.25	1	42482	3	0	3	0	84
ASE_00403	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	55941	4	0	4	0	107
ASE_00404	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	43065	9	0	6	3	85
ASE_00406	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	48823	6	0	5	1	94
ASE_00411	RNaseP_bact_a links to Rfam database...	0.11	0.02	0.50	2	49451	2	0	2	0	87
ASE_00412	RNaseP_bact_a links to Rfam database...	0.04	0.01	0.17	1	58305	5	1	4	0	104
ASE_00413	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	44546	5	0	5	0	81
ASE_00414	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46359	1	0	1	0	95
ASE_00415	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	54941	5	1	4	0	103
ASE_00416	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	77412	9	0	9	0	127
ASE_00417	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	54615	0	0	0	0	100
ASE_00418	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	38781	0	0	0	0	75
ASE_00419	RNaseP_bact_a links to Rfam database...	0.10	0.03	0.33	3	54937	6	0	6	0	100
ASE_00420	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	43365	0	0	0	0	63
ASE_00422	RNaseP_bact_a links to Rfam database...	0.05	0.02	0.12	2	46954	19	1	14	4	92
ASE_00423	RNaseP_bact_a links to Rfam database...	0.14	0.04	0.50	4	56945	4	0	4	0	105
ASE_00426	RNaseP_bact_a links to Rfam database...	0.11	0.04	0.31	4	61062	9	0	9	0	104
ASE_00427	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	40755	0	0	0	0	46
ASE_00428	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	76629	8	0	7	1	125
ASE_00430	RNaseP_bact_a links to Rfam database...	0.07	0.02	0.25	2	46963	6	0	6	0	95
ASE_00431	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46358	2	0	2	0	95
ASE_00434	RNaseP_bact_b links to Rfam database...	0.04	0.02	0.11	2	68246	20	1	16	3	108
ASE_00437	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	79395	7	0	6	1	135
ASE_00438	RNaseP_bact_a links to Rfam database...	0.02	0.01	0.07	1	66052	13	2	11	0	115
ASE_00441	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	64258	3	0	3	0	112
ASE_00443	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	26794	2	0	2	0	50
ASE_00447	RNaseP_bact_a links to Rfam database...	0.15	0.03	0.67	4	60372	2	0	2	0	112
ASE_00448	RNaseP_bact_a links to Rfam database...	0.04	0.01	0.14	1	64254	6	1	5	0	111
ASE_00451	RNaseP_bact_a links to Rfam database...	0.11	0.03	0.36	4	70865	7	0	7	0	121
ASE_00454	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	43365	0	0	0	0	63
CRW_00013	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	103737	3	0	3	0	115
CRW_00016	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	77418	3	0	3	0	120
CRW_00610	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	36310	5	0	5	0	81
CRW_00613	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	34979	1	0	1	0	78
CRW_00614	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	121764	17	0	7	10	57
CRW_00618	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	56279	1	0	1	0	61
CRW_00633	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	63541	5	0	5	0	106
CRW_00634	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	64620	1	0	0	1	94
CRW_00670	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	70124	4	0	1	3	120
CRW_00671	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	62835	0	0	0	0	117
CRW_00672	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	72386	7	0	4	3	111
CRW_00674	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	83436	1	0	0	1	124
CRW_00676	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	93527	2	0	1	1	115
CRW_00692	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	68635	3	0	0	3	90
PDB_00005	Tymo_tRNA-like links to Rfam database...	0.71	0.57	0.89	8	937	1	0	1	0	6
PDB_00012	mir-TAR links to Rfam database...	1.00	1.00	1.00	7	399	1	0	0	1	0
PDB_00213	Gammaretro_CES links to Rfam database...	0.56	0.49	0.65	20	5019	11	0	11	0	21
PDB_00553	mir-TAR links to Rfam database...	0.90	0.82	1.00	9	456	0	0	0	0	2
PDB_00716	HDV_ribozyme links to Rfam database...	0.59	0.48	0.73	11	2686	4	0	4	0	12
PDB_00741	Entero_5_CRE links to Rfam database...	0.00	0.00	0.00	0	703	0	0	0	0	17
PDB_00810	s2m links to Rfam database...	0.80	0.65	1.00	11	1070	0	0	0	0	6
PDB_00827	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	27026	2	0	2	0	81
PDB_00828	Purine links to Rfam database...	0.54	0.41	0.73	11	2470	4	2	2	0	16
PDB_00829	Purine links to Rfam database...	0.74	0.63	0.88	15	2261	2	2	0	0	9
PDB_00876	HIV_FE links to Rfam database...	0.57	0.50	0.67	10	975	5	0	5	0	10
PDB_00919	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	44249	5	0	4	1	103
PDB_01001	tRNA links to Rfam database...	0.00	0.00	0.00	0	2144	1	0	1	0	18
PDB_01020	Purine links to Rfam database...	0.76	0.65	0.88	15	2261	2	2	0	0	8
PDB_01050	UnaL2 links to Rfam database...	0.62	0.46	0.86	6	623	2	0	1	1	7
PDB_01051	Telomerase-cil links to Rfam database...	-0.01	0.00	0.00	0	899	4	2	2	0	13
PDB_01073	SAM links to Rfam database...	0.39	0.18	0.86	6	4364	1	0	1	0	28
PDB_01092	glmS links to Rfam database...	0.48	0.37	0.63	19	10123	13	1	10	2	33
PDB_01114	TPP links to Rfam database...	0.74	0.56	1.00	15	2835	0	0	0	0	12
PDB_01152	HIV_FS2 links to Rfam database...	0.88	0.79	1.00	11	550	0	0	0	0	3
PDB_01236	ykoK links to Rfam database...	0.00	0.00	0.00	0	11621	7	0	7	0	54
RFA_00389	Hammerhead_3 links to Rfam database...	0.63	0.40	1.00	6	1425	1	0	0	1	9
RFA_00390	Hammerhead_3 links to Rfam database...	0.63	0.40	1.00	6	1425	1	0	0	1	9
RFA_00391	Hammerhead_3 links to Rfam database...	0.63	0.40	1.00	6	1425	1	0	0	1	9
RFA_00396	Hammerhead_3 links to Rfam database...	0.63	0.40	1.00	6	1425	1	0	0	1	9
RFA_00402	Hammerhead_3 links to Rfam database...	0.63	0.40	1.00	6	1425	0	0	0	0	9
RFA_00409	Hammerhead_3 links to Rfam database...	0.58	0.33	1.00	5	1426	1	0	0	1	10
RFA_00416	Hammerhead_3 links to Rfam database...	0.63	0.40	1.00	6	1479	1	0	0	1	9
RFA_00425	Hammerhead_3 links to Rfam database...	0.63	0.40	1.00	6	1647	0	0	0	0	9
RFA_00427	Hammerhead_3 links to Rfam database...	0.00	0.00	0.00	0	1482	3	0	3	0	15
RFA_00433	Hammerhead_3 links to Rfam database...	0.63	0.40	1.00	6	1425	1	0	0	1	9
RFA_00434	Hammerhead_3 links to Rfam database...	0.63	0.40	1.00	6	1425	1	0	0	1	9
RFA_00436	Hammerhead_3 links to Rfam database...	0.63	0.40	1.00	6	1425	1	0	0	1	9
RFA_00440	Hammerhead_3 links to Rfam database...	0.63	0.40	1.00	6	1479	1	0	0	1	9
RFA_00442	Hammerhead_3 links to Rfam database...	0.63	0.40	1.00	6	1425	1	0	0	1	9
RFA_00444	Hammerhead_3 links to Rfam database...	0.00	0.00	0.00	0	1538	2	0	2	0	15
RFA_00446	Hammerhead_3 links to Rfam database...	-0.01	0.00	0.00	0	1481	4	0	4	0	15
RFA_00449	Hammerhead_3 links to Rfam database...	-0.01	0.00	0.00	0	1481	4	0	4	0	15
RFA_00582	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	5980	4	0	0	4	0
RFA_00583	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4935	7	0	0	7	0
RFA_00584	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	2911	2	0	0	2	0
RFA_00585	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4836	6	0	0	6	0
RFA_00586	Y_RNA links to Rfam database...	0.97	0.93	1.00	14	3902	2	0	0	2	1
RFA_00587	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4836	4	0	0	4	0
RFA_00588	Y_RNA links to Rfam database...	0.97	0.93	1.00	14	4546	4	0	0	4	1
RFA_00589	Y_RNA links to Rfam database...	0.93	0.87	1.00	13	4358	3	0	0	3	2
RFA_00594	Y_RNA links to Rfam database...	0.93	0.87	1.00	13	2762	2	0	0	2	2
RFA_00596	Y_RNA links to Rfam database...	0.82	0.67	1.00	10	5985	5	0	0	5	5
RFA_00597	Telomerase-vert links to Rfam database...	0.00	0.00	0.00	0	97889	17	4	10	3	109
RFA_00598	Telomerase-vert links to Rfam database...	0.00	0.00	0.00	0	84655	11	0	11	0	101
RFA_00599	Telomerase-vert links to Rfam database...	0.43	0.25	0.74	28	101437	25	0	10	15	83
RFA_00600	Telomerase-vert links to Rfam database...	0.00	0.00	0.00	0	120278	17	1	16	0	100
RFA_00601	Telomerase-vert links to Rfam database...	0.57	0.38	0.86	43	99185	16	1	6	9	71
RFA_00602	Telomerase-vert links to Rfam database...	0.09	0.02	0.50	2	101471	3	1	1	1	114
RFA_00603	Telomerase-cil links to Rfam database...	0.00	0.00	0.00	0	13520	11	2	8	1	35
RFA_00604	Telomerase-cil links to Rfam database...	0.00	0.00	0.00	0	13529	1	0	1	0	35
RFA_00605	Telomerase-cil links to Rfam database...	0.00	0.00	0.00	0	15215	11	2	8	1	35
RFA_00606	Telomerase-cil links to Rfam database...	0.00	0.00	0.00	0	21309	12	3	9	0	39
RFA_00607	Telomerase-cil links to Rfam database...	0.00	0.00	0.00	0	17752	15	0	14	1	36
RFA_00609	Telomerase-cil links to Rfam database...	0.00	0.00	0.00	0	17949	9	1	5	3	37
RFA_00610	Telomerase-cil links to Rfam database...	0.00	0.00	0.00	0	17195	10	3	7	0	37
RFA_00611	Telomerase-cil links to Rfam database...	0.00	0.00	0.00	0	13032	10	0	9	1	35
RFA_00613	Telomerase-cil links to Rfam database...	0.00	0.00	0.00	0	12879	1	0	1	0	35
RFA_00615	Telomerase-cil links to Rfam database...	0.00	0.00	0.00	0	13360	6	0	6	0	35
RFA_00620	Telomerase-cil links to Rfam database...	0.00	0.00	0.00	0	21941	4	0	4	0	39
RFA_00621	RNase_MRP links to Rfam database...	0.00	0.00	0.00	0	46359	1	0	1	0	76
RFA_00623	RNase_MRP links to Rfam database...	0.00	0.00	0.00	0	43955	1	0	1	0	78
RFA_00624	RNase_MRP links to Rfam database...	0.00	0.00	0.00	0	30135	0	0	0	0	61
RFA_00626	rne5 links to Rfam database...	0.90	0.80	1.00	70	56546	12	0	0	12	17
RFA_00627	rne5 links to Rfam database...	0.90	0.82	0.99	71	56881	11	0	1	10	16
RFA_00628	rne5 links to Rfam database...	0.89	0.81	0.97	70	57219	12	0	2	10	16
RFA_00630	rne5 links to Rfam database...	0.85	0.75	0.97	65	56886	11	0	2	9	22
RFA_00632	HDV_ribozyme links to Rfam database...	0.47	0.39	0.58	11	4076	8	3	5	0	17
RFA_00636	HDV_ribozyme links to Rfam database...	0.62	0.54	0.71	15	3984	6	3	3	0	13
RFA_00639	7SK links to Rfam database...	0.59	0.48	0.72	42	54557	30	3	13	14	45
RFA_00642	Vimentin3 links to Rfam database...	0.31	0.22	0.44	4	2917	5	0	5	0	14
RFA_00643	Vimentin3 links to Rfam database...	0.21	0.17	0.27	3	2200	8	0	8	0	15
RFA_00644	Vimentin3 links to Rfam database...	0.36	0.33	0.40	6	2686	9	1	8	0	12
RFA_00645	Vimentin3 links to Rfam database...	0.31	0.28	0.36	5	2401	9	1	8	0	13
RFA_00649	Vimentin3 links to Rfam database...	0.37	0.33	0.43	6	2131	8	0	8	0	12
RFA_00651	Vimentin3 links to Rfam database...	0.32	0.28	0.38	5	2067	8	0	8	0	13
RFA_00653	Vimentin3 links to Rfam database...	0.36	0.33	0.40	6	2130	9	1	8	0	12
RFA_00654	Vimentin3 links to Rfam database...	0.35	0.28	0.45	5	2404	6	0	6	0	13
RFA_00658	Hammerhead_1 links to Rfam database...	0.64	0.57	0.73	8	1117	4	0	3	1	6
RFA_00659	Hammerhead_1 links to Rfam database...	0.35	0.29	0.44	4	1119	6	0	5	1	10
RFA_00664	Hammerhead_1 links to Rfam database...	0.59	0.50	0.70	7	980	4	0	3	1	7
RFA_00667	Hammerhead_1 links to Rfam database...	0.64	0.57	0.73	8	979	4	0	3	1	6
RFA_00668	Hammerhead_1 links to Rfam database...	0.71	0.57	0.89	8	981	1	0	1	0	6
RFA_00672	Hammerhead_1 links to Rfam database...	0.61	0.54	0.70	7	893	3	0	3	0	6
RFA_00673	Hammerhead_1 links to Rfam database...	0.42	0.36	0.50	5	1118	6	0	5	1	9
RFA_00674	Hammerhead_1 links to Rfam database...	0.69	0.64	0.75	9	1116	4	0	3	1	5
RFA_00675	Hammerhead_1 links to Rfam database...	0.62	0.50	0.78	7	981	3	0	2	1	7
RFA_00677	Hammerhead_1 links to Rfam database...	0.72	0.64	0.82	9	979	2	0	2	0	5
RFA_00678	Hammerhead_1 links to Rfam database...	0.43	0.29	0.67	4	940	3	0	2	1	10
RFA_00680	Hammerhead_1 links to Rfam database...	0.69	0.64	0.75	9	1116	4	0	3	1	5
RFA_00684	Hammerhead_1 links to Rfam database...	0.80	0.64	1.00	9	981	1	0	0	1	5
RFA_00685	Hammerhead_1 links to Rfam database...	0.64	0.57	0.73	8	979	4	0	3	1	6
RFA_00695	Hammerhead_1 links to Rfam database...	0.31	0.14	0.67	2	7018	2	0	1	1	12
RFA_00703	Hammerhead_1 links to Rfam database...	0.54	0.36	0.83	5	4272	1	0	1	0	9
RFA_00704	Hammerhead_1 links to Rfam database...	0.35	0.29	0.44	4	981	6	0	5	1	10
RFA_00705	Hammerhead_1 links to Rfam database...	0.80	0.64	1.00	9	1026	1	0	0	1	5
RFA_00706	Hammerhead_1 links to Rfam database...	0.56	0.43	0.75	6	1027	3	0	2	1	8
RFA_00707	Hammerhead_1 links to Rfam database...	0.67	0.57	0.80	8	1025	3	0	2	1	6
RFA_00708	Hammerhead_1 links to Rfam database...	0.75	0.57	1.00	8	1027	1	0	0	1	6
RFA_00709	Hammerhead_1 links to Rfam database...	0.53	0.43	0.67	6	981	3	0	3	0	8
RFA_00710	Hammerhead_1 links to Rfam database...	0.43	0.29	0.67	4	984	2	0	2	0	10
RFA_00711	Hammerhead_1 links to Rfam database...	0.35	0.21	0.60	3	1030	3	0	2	1	11
RFA_00715	Hammerhead_1 links to Rfam database...	0.66	0.50	0.88	7	938	2	0	1	1	7
RFA_00716	Hammerhead_1 links to Rfam database...	0.56	0.43	0.75	6	938	3	0	2	1	8
RFA_00717	Hammerhead_1 links to Rfam database...	0.50	0.36	0.71	5	896	2	0	2	0	9
RFA_00730	s2m links to Rfam database...	0.91	0.83	1.00	10	893	1	0	0	1	2
RFA_00731	s2m links to Rfam database...	0.91	0.83	1.00	10	893	1	0	0	1	2
RFA_00733	s2m links to Rfam database...	0.91	0.83	1.00	10	893	1	0	0	1	2
RFA_00734	s2m links to Rfam database...	0.91	0.83	1.00	10	893	0	0	0	0	2
RFA_00736	s2m links to Rfam database...	0.91	0.83	1.00	10	893	1	0	0	1	2
RFA_00737	s2m links to Rfam database...	0.91	0.83	1.00	10	893	1	0	0	1	2
RFA_00745	s2m links to Rfam database...	0.91	0.83	1.00	10	936	1	0	0	1	2
RFA_00749	s2m links to Rfam database...	0.91	0.83	1.00	10	893	1	0	0	1	2
RFA_00758	s2m links to Rfam database...	0.86	0.75	1.00	9	894	0	0	0	0	3
RFA_00762	s2m links to Rfam database...	0.91	0.83	1.00	10	893	0	0	0	0	2
RFA_00763	s2m links to Rfam database...	0.91	0.83	1.00	10	893	1	0	0	1	2
RFA_00764	s2m links to Rfam database...	0.91	0.83	1.00	10	893	1	0	0	1	2
RFA_00765	s2m links to Rfam database...	0.91	0.83	1.00	10	893	1	0	0	1	2
RFA_00767	Corona_pk3 links to Rfam database...	0.19	0.17	0.23	3	1878	10	3	7	0	15
RFA_00768	Corona_pk3 links to Rfam database...	0.19	0.17	0.23	3	1878	10	3	7	0	15
RFA_00769	Corona_pk3 links to Rfam database...	0.59	0.56	0.63	10	1937	6	4	2	0	8
RFA_00770	Corona_pk3 links to Rfam database...	0.54	0.56	0.53	10	1997	9	6	3	0	8
RFA_00773	Corona_pk3 links to Rfam database...	0.50	0.50	0.50	9	1935	9	6	3	0	9
RFA_00779	Corona_pk3 links to Rfam database...	0.50	0.50	0.50	9	1935	9	6	3	0	9
RFA_00781	Gammaretro_CES links to Rfam database...	0.61	0.59	0.63	19	5020	12	2	9	1	13
RFA_00786	Gammaretro_CES links to Rfam database...	0.61	0.59	0.63	19	5020	12	2	9	1	13
RFA_00791	Gammaretro_CES links to Rfam database...	0.58	0.53	0.63	17	5124	11	2	8	1	15
RFA_00792	Gammaretro_CES links to Rfam database...	0.64	0.63	0.67	20	5020	11	2	8	1	12
RFA_00801	Gammaretro_CES links to Rfam database...	0.59	0.56	0.62	18	5021	12	2	9	1	14
RFA_00808	RydC links to Rfam database...	0.60	0.50	0.73	8	2005	4	0	3	1	8
RFA_00809	RydC links to Rfam database...	0.37	0.31	0.45	5	2134	7	0	6	1	11
RFA_00814	R2_retro_el links to Rfam database...	0.90	0.85	0.95	35	25163	11	0	2	9	6
RFA_00815	R2_retro_el links to Rfam database...	0.90	0.85	0.95	35	24494	10	0	2	8	6
RFA_00816	R2_retro_el links to Rfam database...	0.90	0.85	0.95	35	23183	8	0	2	6	6
RFA_00817	R2_retro_el links to Rfam database...	0.88	0.83	0.94	34	21909	7	0	2	5	7
RFA_00818	R2_retro_el links to Rfam database...	0.80	0.71	0.91	29	20269	10	0	3	7	12
RFA_00819	R2_retro_el links to Rfam database...	0.90	0.85	0.95	35	27929	13	0	2	11	6
SPR_00020	tRNA links to Rfam database...	0.00	0.00	0.00	0	2696	5	0	5	0	20
SPR_00023	tRNA links to Rfam database...	0.00	0.00	0.00	0	2846	5	0	4	1	21
SPR_00137	tRNA links to Rfam database...	0.00	0.00	0.00	0	2924	2	0	2	0	21
SPR_00273	tRNA links to Rfam database...	0.00	0.00	0.00	0	2846	4	0	4	0	21
SPR_00277	tRNA links to Rfam database...	0.00	0.00	0.00	0	2923	4	0	3	1	21
SPR_00394	tRNA links to Rfam database...	0.00	0.00	0.00	0	3649	7	0	6	1	21
SPR_00402	tRNA links to Rfam database...	0.00	0.00	0.00	0	2552	4	0	4	0	21
SPR_00721	tRNA links to Rfam database...	0.00	0.00	0.00	0	2923	3	0	3	0	21
SPR_00816	tRNA links to Rfam database...	0.00	0.00	0.00	0	3484	2	0	2	0	20
SPR_01157	tRNA links to Rfam database...	0.00	0.00	0.00	0	2774	1	0	1	0	21
SRP_00001	Bacteria_large_SRP links to Rfam database...	0.63	0.50	0.80	20	6761	5	1	4	0	20
SRP_00002	Metazoa_SRP links to Rfam database...	0.51	0.35	0.75	36	45102	13	0	12	1	66
SRP_00006	Metazoa_SRP links to Rfam database...	0.51	0.36	0.72	36	45703	15	0	14	1	65
SRP_00008	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	2921	5	1	4	0	25
SRP_00009	Plant_SRP links to Rfam database...	0.09	0.06	0.15	6	46626	34	1	32	1	96
SRP_00011	Plant_SRP links to Rfam database...	0.45	0.33	0.63	34	46306	21	1	19	1	70
SRP_00012	Plant_SRP links to Rfam database...	0.11	0.07	0.17	7	46319	35	2	32	1	94
SRP_00015	Plant_SRP links to Rfam database...	0.11	0.07	0.18	7	46320	34	1	32	1	92
SRP_00016	Archaea_SRP links to Rfam database...	0.58	0.41	0.82	45	47840	11	0	10	1	64
SRP_00018	Fungi_SRP links to Rfam database...	0.00	0.00	0.00	0	38497	6	1	5	0	81
SRP_00019	Fungi_SRP links to Rfam database...	0.00	0.00	0.00	0	36042	4	3	1	0	91
SRP_00020	Bacteria_small_SRP links to Rfam database...	0.38	0.24	0.62	8	5552	5	0	5	0	25
SRP_00024	Bacteria_large_SRP links to Rfam database...	0.53	0.45	0.64	39	37614	23	4	18	1	48
SRP_00026	Bacteria_large_SRP links to Rfam database...	0.60	0.55	0.67	48	36784	25	4	20	1	40
SRP_00027	Bacteria_large_SRP links to Rfam database...	0.59	0.53	0.66	46	37058	24	4	20	0	41
SRP_00030	Bacteria_large_SRP links to Rfam database...	0.64	0.58	0.71	51	36784	21	4	17	0	37
SRP_00031	Bacteria_large_SRP links to Rfam database...	0.63	0.57	0.70	51	36242	22	4	18	0	38
SRP_00037	Bacteria_large_SRP links to Rfam database...	0.66	0.60	0.73	52	36514	19	4	15	0	35
SRP_00038	Bacteria_small_SRP links to Rfam database...	0.35	0.21	0.58	7	5038	5	1	4	0	26
SRP_00040	Bacteria_small_SRP links to Rfam database...	0.24	0.16	0.36	5	5551	9	2	7	0	26
SRP_00042	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	3997	8	0	8	0	25
SRP_00043	Bacteria_small_SRP links to Rfam database...	0.53	0.38	0.73	11	5035	5	0	4	1	18
SRP_00044	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6095	11	1	9	1	32
SRP_00046	Bacteria_small_SRP links to Rfam database...	0.33	0.19	0.60	6	4743	4	1	3	0	26
SRP_00050	Metazoa_SRP links to Rfam database...	0.56	0.43	0.72	43	44790	17	0	17	0	56
SRP_00051	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	5448	12	1	11	0	30
SRP_00053	Metazoa_SRP links to Rfam database...	0.17	0.12	0.25	11	45106	33	2	31	0	83
SRP_00054	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	5555	10	1	9	0	32
SRP_00056	Bacteria_small_SRP links to Rfam database...	0.04	0.03	0.07	1	6426	14	3	11	0	36
SRP_00057	Bacteria_small_SRP links to Rfam database...	0.21	0.11	0.40	4	6318	6	0	6	0	31
SRP_00058	Bacteria_small_SRP links to Rfam database...	0.31	0.18	0.55	6	5767	6	0	5	1	28
SRP_00060	Metazoa_SRP links to Rfam database...	0.42	0.28	0.64	28	44507	16	0	16	0	72
SRP_00061	Metazoa_SRP links to Rfam database...	0.44	0.31	0.62	31	44800	19	1	18	0	69
SRP_00066	Metazoa_SRP links to Rfam database...	0.54	0.41	0.72	41	45394	16	0	16	0	59
SRP_00067	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	5768	10	0	10	0	38
SRP_00069	Fungi_SRP links to Rfam database...	0.10	0.04	0.30	3	34443	9	0	7	2	82
SRP_00072	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6320	8	4	4	0	29
SRP_00073	Fungi_SRP links to Rfam database...	0.12	0.04	0.33	3	39051	8	2	4	2	68
SRP_00074	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6548	7	1	6	0	29
SRP_00075	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	5557	9	1	7	1	34
SRP_00077	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6660	10	1	9	0	37
SRP_00079	Plant_SRP links to Rfam database...	0.10	0.06	0.17	5	41875	26	2	23	1	83
SRP_00081	Bacteria_small_SRP links to Rfam database...	0.29	0.19	0.43	6	5551	8	1	7	0	25
SRP_00084	Bacteria_small_SRP links to Rfam database...	0.34	0.21	0.58	7	5448	5	1	4	0	27
SRP_00085	Plant_SRP links to Rfam database...	0.47	0.35	0.65	35	45397	21	2	17	2	66
SRP_00086	Metazoa_SRP links to Rfam database...	0.52	0.40	0.69	40	44195	18	0	18	0	60
SRP_00087	Fungi_SRP links to Rfam database...	0.25	0.10	0.60	6	37391	6	1	3	2	52
SRP_00088	Bacteria_large_SRP links to Rfam database...	0.56	0.47	0.67	42	34128	21	4	17	0	47
SRP_00089	Bacteria_large_SRP links to Rfam database...	0.61	0.50	0.74	45	35717	16	3	13	0	45
SRP_00090	Bacteria_large_SRP links to Rfam database...	0.65	0.58	0.73	52	35440	20	3	16	1	38
SRP_00091	Fungi_SRP links to Rfam database...	0.09	0.02	0.40	2	52970	5	0	3	2	93
SRP_00094	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	4089	6	1	5	0	24
SRP_00095	Bacteria_small_SRP links to Rfam database...	0.57	0.44	0.73	11	3990	4	3	1	0	14
SRP_00098	Bacteria_small_SRP links to Rfam database...	0.04	0.03	0.08	1	6429	11	0	11	0	36
SRP_00099	Plant_SRP links to Rfam database...	0.08	0.04	0.14	4	44821	26	1	24	1	91
SRP_00102	Metazoa_SRP links to Rfam database...	0.57	0.42	0.78	42	44497	12	0	12	0	59
SRP_00103	Metazoa_SRP links to Rfam database...	0.56	0.42	0.74	43	45393	15	0	15	0	59
SRP_00104	Fungi_SRP links to Rfam database...	0.09	0.04	0.20	3	34438	14	0	12	2	66
SRP_00105	Bacteria_small_SRP links to Rfam database...	0.34	0.21	0.58	7	5553	5	1	4	0	27
SRP_00106	Bacteria_large_SRP links to Rfam database...	0.61	0.60	0.63	15	5229	10	2	7	1	10
SRP_00107	Bacteria_small_SRP links to Rfam database...	0.43	0.32	0.60	6	3645	4	0	4	0	13
SRP_00117	Metazoa_SRP links to Rfam database...	0.57	0.39	0.83	40	45403	9	0	8	1	62
SRP_00121	Bacteria_small_SRP links to Rfam database...	0.60	0.36	1.00	9	4269	0	0	0	0	16
SRP_00123	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	36569	16	1	15	0	91
SRP_00124	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	37109	20	2	17	1	85
SRP_00127	Fungi_SRP links to Rfam database...	0.07	0.02	0.29	2	72383	7	0	5	2	117
SRP_00128	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6778	8	2	6	0	36
SRP_00130	Archaea_SRP links to Rfam database...	0.43	0.31	0.60	30	49720	22	2	18	2	67
SRP_00132	Bacteria_small_SRP links to Rfam database...	0.32	0.21	0.50	6	4839	6	2	4	0	23
SRP_00134	Bacteria_large_SRP links to Rfam database...	0.65	0.66	0.66	19	5966	11	0	10	1	10
SRP_00136	Fungi_SRP links to Rfam database...	0.10	0.04	0.25	3	44241	11	1	8	2	68
SRP_00137	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	4178	8	1	7	0	25
SRP_00141	Bacteria_small_SRP links to Rfam database...	0.26	0.15	0.46	6	6315	7	0	7	0	35
SRP_00142	Archaea_SRP links to Rfam database...	0.55	0.42	0.74	39	46003	17	0	14	3	54
SRP_00143	Archaea_SRP links to Rfam database...	0.56	0.45	0.70	45	49706	20	0	19	1	56
SRP_00144	Archaea_SRP links to Rfam database...	0.55	0.43	0.70	40	46608	20	1	16	3	54
SRP_00145	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6315	13	0	13	0	40
SRP_00146	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	5246	7	1	6	0	36
SRP_00148	Fungi_SRP links to Rfam database...	0.09	0.02	0.33	2	50080	6	1	3	2	85
SRP_00152	Plant_SRP links to Rfam database...	0.58	0.39	0.87	40	45707	7	0	6	1	63
SRP_00153	Plant_SRP links to Rfam database...	0.52	0.36	0.74	39	46918	16	0	14	2	68
SRP_00157	Fungi_SRP links to Rfam database...	0.10	0.04	0.25	3	44241	11	2	7	2	69
SRP_00158	Fungi_SRP links to Rfam database...	0.13	0.02	1.00	2	124249	1	0	0	1	113
SRP_00160	Fungi_SRP links to Rfam database...	0.08	0.02	0.25	3	86308	9	3	6	0	127
SRP_00161	Bacteria_small_SRP links to Rfam database...	0.41	0.32	0.54	7	2837	6	0	6	0	15
SRP_00162	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	2921	5	4	1	0	23
SRP_00163	Bacteria_small_SRP links to Rfam database...	0.43	0.27	0.70	7	3476	3	0	3	0	19
SRP_00164	Bacteria_small_SRP links to Rfam database...	0.72	0.60	0.88	21	6879	4	1	2	1	14
SRP_00170	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	4091	4	0	4	0	25
SRP_00171	Metazoa_SRP links to Rfam database...	0.53	0.40	0.70	35	45401	15	0	15	0	53
SRP_00173	Bacteria_large_SRP links to Rfam database...	0.53	0.44	0.63	40	38163	25	4	19	2	50
SRP_00174	Bacteria_large_SRP links to Rfam database...	0.44	0.31	0.63	27	38738	16	0	16	0	59
SRP_00175	Fungi_SRP links to Rfam database...	0.12	0.04	0.38	3	44543	7	2	3	2	81
SRP_00178	Plant_SRP links to Rfam database...	0.51	0.36	0.71	37	45701	16	0	15	1	65
SRP_00179	Plant_SRP links to Rfam database...	0.50	0.35	0.73	37	46005	15	0	14	1	68
SRP_00181	Plant_SRP links to Rfam database...	0.52	0.35	0.77	36	46009	12	0	11	1	66
SRP_00182	Plant_SRP links to Rfam database...	0.57	0.41	0.79	41	46004	12	1	10	1	60
SRP_00184	Plant_SRP links to Rfam database...	0.51	0.36	0.73	36	46007	14	0	13	1	64
SRP_00188	Plant_SRP links to Rfam database...	0.65	0.52	0.82	41	31075	10	0	9	1	38
SRP_00194	Bacteria_small_SRP links to Rfam database...	0.16	0.10	0.29	2	3233	5	2	3	0	19
SRP_00197	Archaea_SRP links to Rfam database...	0.51	0.37	0.73	37	49404	15	3	11	1	64
SRP_00198	Archaea_SRP links to Rfam database...	0.52	0.39	0.70	40	50983	20	2	15	3	63
SRP_00199	Archaea_SRP links to Rfam database...	0.48	0.37	0.63	39	50978	24	0	23	1	66
SRP_00200	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6888	15	1	14	0	36
SRP_00201	Archaea_SRP links to Rfam database...	0.51	0.39	0.68	43	47832	21	0	20	1	68
SRP_00202	Archaea_SRP links to Rfam database...	0.46	0.36	0.58	42	54213	31	2	28	1	75
SRP_00203	Archaea_SRP links to Rfam database...	0.41	0.31	0.54	33	48767	30	1	27	2	72
SRP_00204	Archaea_SRP links to Rfam database...	0.56	0.42	0.74	43	49083	17	1	14	2	59
SRP_00206	Archaea_SRP links to Rfam database...	0.55	0.41	0.73	44	47835	17	0	16	1	64
SRP_00208	Archaea_SRP links to Rfam database...	0.44	0.32	0.60	32	46612	21	2	19	0	69
SRP_00209	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	4649	7	1	6	0	27
SRP_00213	Bacteria_small_SRP links to Rfam database...	0.39	0.28	0.54	7	4173	6	1	5	0	18
SRP_00215	Bacteria_small_SRP links to Rfam database...	0.44	0.28	0.70	7	3230	3	1	2	0	18
SRP_00216	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	3396	7	1	6	0	27
SRP_00217	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	3312	9	1	8	0	24
SRP_00219	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	3315	6	1	5	0	23
SRP_00222	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	3074	7	1	6	0	25
SRP_00227	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	5143	8	0	8	0	31
SRP_00228	Metazoa_SRP links to Rfam database...	0.56	0.42	0.75	40	45398	14	1	12	1	55
SRP_00229	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	5246	7	2	5	0	27
SRP_00230	Fungi_SRP links to Rfam database...	0.08	0.03	0.18	3	39604	16	0	14	2	87
SRP_00231	Bacteria_small_SRP links to Rfam database...	0.46	0.29	0.71	10	5446	4	0	4	0	24
SRP_00233	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	5141	10	1	9	0	33
SRP_00234	Bacteria_large_SRP links to Rfam database...	0.59	0.53	0.66	46	36245	27	5	19	3	40
SRP_00239	Plant_SRP links to Rfam database...	0.39	0.31	0.50	29	50345	30	2	27	1	64
SRP_00240	Plant_SRP links to Rfam database...	0.47	0.37	0.60	38	48142	27	2	23	2	64
SRP_00241	Plant_SRP links to Rfam database...	0.00	0.00	0.00	0	46025	31	2	29	0	82
SRP_00243	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	5140	11	1	10	0	31
SRP_00244	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6891	12	1	11	0	39
SRP_00247	Metazoa_SRP links to Rfam database...	0.50	0.38	0.67	33	47229	19	2	14	3	54
SRP_00250	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6775	11	2	9	0	36
SRP_00251	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	7011	10	1	9	0	36
SRP_00252	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	49113	28	3	25	0	89
SRP_00253	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	49433	22	4	18	0	90
SRP_00254	Fungi_SRP links to Rfam database...	0.00	0.00	0.00	0	32382	3	3	0	0	61
SRP_00255	Archaea_SRP links to Rfam database...	0.52	0.38	0.71	36	47535	17	2	13	2	58
SRP_00257	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	51009	31	2	29	0	108
SRP_00260	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	47877	18	1	17	0	100
SRP_00265	Fungi_SRP links to Rfam database...	0.00	0.00	0.00	0	41319	9	1	8	0	73
SRP_00266	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	4647	9	1	8	0	29
SRP_00267	Metazoa_SRP links to Rfam database...	0.17	0.11	0.26	11	44509	32	0	31	1	85
SRP_00268	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	4180	6	1	5	0	27
SRP_00269	Bacteria_small_SRP links to Rfam database...	0.29	0.18	0.46	6	5037	7	0	7	0	27
SRP_00270	Bacteria_small_SRP links to Rfam database...	0.28	0.16	0.50	5	4646	5	0	5	0	26
SRP_00271	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	3235	5	0	5	0	24
SRP_00273	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6778	8	1	7	0	40
SRP_00274	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6892	11	1	10	0	38
SRP_00276	Archaea_SRP links to Rfam database...	0.62	0.48	0.79	53	50654	15	1	13	1	57
SRP_00278	Archaea_SRP links to Rfam database...	0.48	0.35	0.65	37	45999	21	1	19	1	68
SRP_00282	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	43345	20	3	17	0	63
SRP_00285	Bacteria_small_SRP links to Rfam database...	0.33	0.20	0.55	6	3730	5	0	5	0	24
SRP_00290	Fungi_SRP links to Rfam database...	0.00	0.00	0.00	0	100557	19	1	18	0	135
SRP_00295	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6894	9	1	8	0	38
SRP_00299	Metazoa_SRP links to Rfam database...	0.48	0.34	0.67	34	44202	17	0	17	0	65
SRP_00300	Metazoa_SRP links to Rfam database...	0.46	0.35	0.61	33	44199	21	0	21	0	61
SRP_00301	Fungi_SRP links to Rfam database...	0.10	0.02	0.40	2	32635	5	0	3	2	84
SRP_00302	Fungi_SRP links to Rfam database...	0.10	0.04	0.25	3	41604	11	3	6	2	78
SRP_00303	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6665	5	1	4	0	32
SRP_00308	Bacteria_large_SRP links to Rfam database...	0.62	0.55	0.72	48	36248	19	4	15	0	40
SRP_00310	Bacteria_small_SRP links to Rfam database...	0.60	0.43	0.83	10	2914	3	0	2	1	13
SRP_00312	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	4178	8	0	8	0	27
SRP_00315	Bacteria_small_SRP links to Rfam database...	0.63	0.43	0.91	10	2915	1	0	1	0	13
SRP_00317	Metazoa_SRP links to Rfam database...	0.47	0.36	0.63	35	45094	21	0	21	0	63
SRP_00318	Bacteria_small_SRP links to Rfam database...	0.69	0.48	1.00	11	2992	0	0	0	0	12
SRP_00321	Archaea_SRP links to Rfam database...	0.37	0.25	0.56	27	47538	22	1	20	1	81
SRP_00322	Archaea_SRP links to Rfam database...	0.47	0.34	0.66	37	48460	20	2	17	1	72
SRP_00323	Archaea_SRP links to Rfam database...	0.53	0.36	0.76	39	47227	13	0	12	1	68
SRP_00324	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	5344	12	2	10	0	29
SRP_00325	Bacteria_small_SRP links to Rfam database...	0.36	0.21	0.64	7	4360	4	0	4	0	26
SRP_00326	Bacteria_small_SRP links to Rfam database...	0.30	0.16	0.56	5	5041	4	0	4	0	26
SRP_00328	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	39594	27	2	25	0	85
SRP_00329	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	39885	18	1	17	0	85
SRP_00330	Archaea_SRP links to Rfam database...	0.38	0.25	0.57	24	50044	20	1	17	2	71
SRP_00331	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	37656	19	2	17	0	87
SRP_00332	Archaea_SRP links to Rfam database...	0.70	0.58	0.86	61	50332	11	0	10	1	45
SRP_00333	Bacteria_small_SRP links to Rfam database...	0.33	0.21	0.54	7	5138	6	0	6	0	27
SRP_00335	Bacteria_large_SRP links to Rfam database...	0.42	0.41	0.43	16	35208	34	11	10	13	23
SRP_00337	Bacteria_large_SRP links to Rfam database...	0.58	0.49	0.68	45	35445	21	4	17	0	46
SRP_00338	Bacteria_small_SRP links to Rfam database...	0.51	0.33	0.80	12	5445	4	0	3	1	24
SRP_00339	Archaea_SRP links to Rfam database...	0.36	0.26	0.50	24	44503	25	1	23	1	70
SRP_00340	Metazoa_SRP links to Rfam database...	0.21	0.13	0.34	11	41296	23	1	20	2	71
SRP_00341	Bacteria_small_SRP links to Rfam database...	0.35	0.23	0.54	7	4740	6	1	5	0	24
SRP_00342	Bacteria_small_SRP links to Rfam database...	0.38	0.24	0.60	6	3995	4	0	4	0	19
SRP_00347	Metazoa_SRP links to Rfam database...	0.40	0.28	0.57	27	46618	21	1	19	1	69
SRP_00350	Bacteria_small_SRP links to Rfam database...	0.19	0.07	0.50	2	3912	2	0	2	0	25
SRP_00356	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	5043	7	1	6	0	30
SRP_00357	Bacteria_small_SRP links to Rfam database...	0.46	0.31	0.69	11	5340	5	0	5	0	25
SRP_00358	Bacteria_small_SRP links to Rfam database...	0.49	0.29	0.83	10	6316	2	1	1	0	25
SRP_00361	Plant_SRP links to Rfam database...	0.09	0.04	0.19	4	41884	18	1	16	1	86
SRP_00363	Bacteria_small_SRP links to Rfam database...	0.52	0.37	0.73	11	4738	4	0	4	0	19
SRP_00365	Bacteria_small_SRP links to Rfam database...	0.45	0.26	0.78	7	3394	2	0	2	0	20
SRP_00367	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6774	12	0	12	0	35
SRP_00368	Metazoa_SRP links to Rfam database...	0.57	0.45	0.73	44	43896	16	0	16	0	54
SRP_00369	Bacteria_small_SRP links to Rfam database...	0.30	0.17	0.55	6	5767	5	0	5	0	29
SRP_00371	Fungi_SRP links to Rfam database...	0.00	0.00	0.00	0	36310	5	0	5	0	82
SRP_00383	Bacteria_small_SRP links to Rfam database...	0.54	0.42	0.71	10	3226	4	0	4	0	14
TMR_00173	tmRNA links to Rfam database...	0.30	0.17	0.54	7	42182	6	2	4	0	35
TMR_00357	tmRNA links to Rfam database...	0.25	0.09	0.73	8	83017	3	0	3	0	84
TMR_00601	tmRNA links to Rfam database...	0.30	0.19	0.47	8	58979	9	2	7	0	34
TMR_00696	tmRNA links to Rfam database...	0.24	0.07	0.80	8	85068	2	0	2	0	106

^top

Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.

Table of contents:

Overview

Performance plots

Performance of CentroidHomfold‑LAST - scored higher in this pairwise comparison

1. Total counts & total scores for CentroidHomfold‑LAST

2. Individual counts for CentroidHomfold‑LAST [ download as .csv ]

Performance of RSpredict(seed) - scored lower in this pairwise comparison

1. Total counts & total scores for RSpredict(seed)

2. Individual counts for RSpredict(seed) [ download as .csv ]