CompaRNA - on-line benchmarks of RNA structure prediction methods

Laboratory of Structural Bioinformatics @ Adam Mickiewicz University in Poznan

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Overview

Metric	MXScarna(20)		CMfinder(20)
MCC	0.702	>	0.549
Average MCC ± 95% Confidence Intervals	0.766 ± 0.015	>	0.621 ± 0.019
Sensitivity	0.636	>	0.380
Positive Predictive Value	0.776	<	0.794
Total TP	21072	>	12594
Total TN	15420630	<	15431933
Total FP	8333	>	3841
Total FP CONTRA	1038	>	280
Total FP INCONS	5045	>	2978
Total FP COMP	2250	>	583
Total FN	12063	<	20541
P-value	3.56938820447e-08

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Performance plots

Comparison of performance of MXScarna(20) and CMfinder(20). Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data (individual counts for MXScarna(20) and CMfinder(20)).
Average Matthews Correlation Coefficients (MCC) with 95% confidence intervals (CIs) were plotted for different RNA families, for which at least 3 members were present in the benchmarking dataset. 'n' denotes the number of MCCs used to calculate the average and CI. See tables below for raw data (individual counts for MXScarna(20) and CMfinder(20)).
Comparison of average Matthews Correlation Coefficients (MCCs) for MXScarna(20) and CMfinder(20). The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data (individual counts for MXScarna(20) and CMfinder(20)).

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Performance of MXScarna(20) - scored higher in this pairwise comparison

1. Total counts & total scores for MXScarna(20)

Total Base Pair Counts
Total TP	21072
Total TN	15420630
Total FP	8333
Total FP CONTRA	1038
Total FP INCONS	5045
Total FP COMP	2250
Total FN	12063

Total Scores
MCC	0.702
Average MCC ± 95% Confidence Intervals	0.766 ± 0.015
Sensitivity	0.636
Positive Predictive Value	0.776
Nr of predictions	561

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2. Individual counts for MXScarna(20) [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00004	RNaseP_bact_a links to Rfam database...	0.70	0.61	0.80	59	47821	19	2	13	4	38
ASE_00005	RNaseP_bact_a links to Rfam database...	0.77	0.64	0.93	75	57889	11	1	5	5	42
ASE_00006	RNaseP_bact_a links to Rfam database...	0.52	0.47	0.58	44	47510	34	6	26	2	49
ASE_00007	RNaseP_bact_a links to Rfam database...	0.71	0.66	0.77	73	59590	26	2	20	4	37
ASE_00012	RNaseP_bact_a links to Rfam database...	0.75	0.66	0.84	81	73824	18	2	13	3	42
ASE_00018	RNaseP_bact_a links to Rfam database...	0.71	0.64	0.78	86	80491	29	1	23	5	48
ASE_00020	RNaseP_bact_a links to Rfam database...	0.58	0.46	0.74	58	73842	24	3	17	4	68
ASE_00021	RNaseP_bact_a links to Rfam database...	0.74	0.63	0.88	101	104081	17	2	12	3	59
ASE_00022	RNaseP_bact_b links to Rfam database...	0.73	0.66	0.80	82	82925	28	5	16	7	42
ASE_00028	RNaseP_bact_b links to Rfam database...	0.78	0.70	0.87	88	84565	21	4	9	8	38
ASE_00035	RNaseP_bact_a links to Rfam database...	0.63	0.57	0.69	67	70403	38	1	29	8	51
ASE_00037	RNaseP_bact_a links to Rfam database...	0.77	0.70	0.86	77	59250	18	0	13	5	33
ASE_00038	RNaseP_bact_a links to Rfam database...	0.52	0.45	0.62	45	53555	32	3	25	4	56
ASE_00040	RNaseP_bact_a links to Rfam database...	0.62	0.55	0.70	73	78899	38	3	28	7	60
ASE_00041	RNaseP_bact_a links to Rfam database...	0.74	0.63	0.86	68	57551	17	1	10	6	40
ASE_00042	RNaseP_bact_a links to Rfam database...	0.78	0.70	0.86	102	89982	21	3	13	5	43
ASE_00044	RNaseP_bact_a links to Rfam database...	0.82	0.75	0.90	79	54527	13	4	5	4	26
ASE_00045	RNaseP_bact_b links to Rfam database...	0.65	0.60	0.71	48	47210	32	4	16	12	32
ASE_00064	RNaseP_bact_a links to Rfam database...	0.70	0.60	0.83	53	45387	22	1	10	11	36
ASE_00068	RNaseP_bact_a links to Rfam database...	0.79	0.68	0.91	58	37611	11	2	4	5	27
ASE_00074	RNaseP_bact_a links to Rfam database...	0.72	0.63	0.82	75	67805	21	1	15	5	44
ASE_00075	RNaseP_bact_a links to Rfam database...	0.60	0.47	0.77	76	108712	26	4	19	3	86
ASE_00077	RNaseP_bact_a links to Rfam database...	0.74	0.70	0.78	60	45073	22	3	14	5	26
ASE_00078	RNaseP_bact_a links to Rfam database...	0.77	0.69	0.86	57	43005	17	2	7	8	26
ASE_00080	RNaseP_bact_a links to Rfam database...	0.40	0.33	0.48	40	71548	48	5	38	5	83
ASE_00081	RNaseP_bact_a links to Rfam database...	0.74	0.67	0.82	65	49691	24	1	13	10	32
ASE_00082	RNaseP_bact_a links to Rfam database...	0.41	0.34	0.51	39	70424	44	4	33	7	77
ASE_00083	RNaseP_bact_a links to Rfam database...	0.74	0.67	0.81	74	62390	24	2	15	7	36
ASE_00084	RNaseP_bact_a links to Rfam database...	0.60	0.49	0.72	49	53560	28	2	17	9	50
ASE_00087	RNaseP_bact_a links to Rfam database...	0.42	0.31	0.59	44	88335	37	2	29	6	100
ASE_00090	RNaseP_bact_a links to Rfam database...	0.58	0.50	0.68	50	55538	27	1	22	4	51
ASE_00092	RNaseP_bact_a links to Rfam database...	0.62	0.52	0.74	59	63466	28	6	15	7	54
ASE_00099	RNaseP_bact_a links to Rfam database...	0.74	0.68	0.80	82	64517	24	2	19	3	38
ASE_00104	RNaseP_bact_a links to Rfam database...	0.73	0.66	0.81	79	64164	25	1	17	7	40
ASE_00105	RNaseP_bact_a links to Rfam database...	0.55	0.48	0.64	53	64178	35	0	30	5	58
ASE_00107	RNaseP_bact_a links to Rfam database...	0.65	0.60	0.72	76	73047	36	1	29	6	51
ASE_00114	RNaseP_bact_b links to Rfam database...	0.48	0.44	0.53	34	45387	38	4	26	8	43
ASE_00115	RNaseP_bact_a links to Rfam database...	0.36	0.28	0.46	28	54554	38	2	31	5	73
ASE_00118	RNaseP_bact_a links to Rfam database...	0.51	0.40	0.64	41	60662	33	1	22	10	61
ASE_00119	RNaseP_bact_a links to Rfam database...	0.32	0.23	0.44	25	62778	34	0	32	2	83
ASE_00123	RNaseP_bact_a links to Rfam database...	0.49	0.35	0.68	30	38459	16	3	11	2	55
ASE_00125	RNaseP_bact_a links to Rfam database...	0.61	0.43	0.86	38	39296	11	0	6	5	50
ASE_00126	RNaseP_bact_a links to Rfam database...	0.85	0.82	0.89	67	40395	15	2	6	7	15
ASE_00128	RNaseP_bact_a links to Rfam database...	0.69	0.56	0.86	56	53236	14	2	7	5	44
ASE_00129	RNaseP_bact_a links to Rfam database...	0.68	0.63	0.74	70	62740	28	3	22	3	41
ASE_00131	RNaseP_bact_a links to Rfam database...	0.60	0.46	0.78	39	39290	20	1	10	9	46
ASE_00134	RNaseP_bact_a links to Rfam database...	0.60	0.52	0.70	49	50333	29	1	20	8	46
ASE_00135	RNaseP_bact_a links to Rfam database...	0.44	0.35	0.56	38	63122	41	1	29	11	71
ASE_00136	RNaseP_bact_a links to Rfam database...	0.70	0.62	0.78	57	48132	24	1	15	8	35
ASE_00137	RNaseP_bact_a links to Rfam database...	0.65	0.57	0.75	56	48441	23	3	16	4	42
ASE_00138	RNaseP_bact_a links to Rfam database...	0.67	0.60	0.74	49	40404	27	1	16	10	32
ASE_00140	RNaseP_bact_a links to Rfam database...	0.53	0.41	0.68	51	70801	28	4	20	4	74
ASE_00142	RNaseP_bact_a links to Rfam database...	0.81	0.74	0.88	90	67059	16	3	9	4	32
ASE_00146	RNaseP_bact_a links to Rfam database...	0.61	0.51	0.74	63	70791	29	1	21	7	61
ASE_00153	RNaseP_nuc links to Rfam database...	0.52	0.45	0.60	33	57575	51	2	20	29	40
ASE_00161	RNaseP_bact_b links to Rfam database...	0.68	0.63	0.72	55	53552	28	4	17	7	32
ASE_00163	RNaseP_bact_a links to Rfam database...	0.71	0.61	0.83	57	53232	17	3	9	5	36
ASE_00165	RNaseP_bact_a links to Rfam database...	0.53	0.45	0.64	45	52905	29	3	22	4	56
ASE_00170	RNaseP_bact_a links to Rfam database...	0.55	0.51	0.59	47	48749	35	5	27	3	46
ASE_00171	RNaseP_bact_a links to Rfam database...	0.46	0.41	0.51	39	48439	42	1	37	4	55
ASE_00172	RNaseP_bact_a links to Rfam database...	0.71	0.58	0.87	61	58926	15	2	7	6	45
ASE_00174	RNaseP_bact_a links to Rfam database...	0.42	0.34	0.53	37	61005	39	3	30	6	72
ASE_00175	RNaseP_bact_a links to Rfam database...	0.68	0.60	0.78	64	59949	26	3	15	8	43
ASE_00179	RNaseP_bact_a links to Rfam database...	0.76	0.69	0.83	58	44183	18	4	8	6	26
ASE_00180	RNaseP_bact_a links to Rfam database...	0.72	0.64	0.82	64	51282	20	3	11	6	36
ASE_00181	RNaseP_bact_a links to Rfam database...	0.67	0.58	0.79	61	57553	24	6	10	8	45
ASE_00182	RNaseP_bact_a links to Rfam database...	0.42	0.32	0.57	43	84179	38	2	31	5	93
ASE_00183	RNaseP_bact_a links to Rfam database...	0.67	0.58	0.79	65	61343	24	0	17	7	48
ASE_00184	RNaseP_bact_a links to Rfam database...	0.66	0.56	0.79	57	54543	17	4	11	2	45
ASE_00185	RNaseP_bact_a links to Rfam database...	0.50	0.37	0.69	47	73468	24	3	18	3	81
ASE_00186	RNaseP_bact_a links to Rfam database...	0.76	0.68	0.84	90	78896	20	1	16	3	42
ASE_00190	RNaseP_bact_b links to Rfam database...	0.52	0.42	0.64	38	45392	24	5	16	3	52
ASE_00197	RNaseP_bact_a links to Rfam database...	0.67	0.58	0.79	84	89146	27	2	21	4	61
ASE_00198	RNaseP_bact_a links to Rfam database...	0.75	0.69	0.81	70	52564	20	4	12	4	32
ASE_00203	RNaseP_bact_a links to Rfam database...	0.70	0.60	0.82	58	46594	17	3	10	4	38
ASE_00212	RNaseP_bact_a links to Rfam database...	0.76	0.68	0.85	100	93844	23	3	14	6	48
ASE_00214	RNaseP_bact_a links to Rfam database...	0.78	0.71	0.86	73	56195	16	4	8	4	30
ASE_00215	RNaseP_bact_a links to Rfam database...	0.24	0.19	0.30	19	48453	48	6	38	4	80
ASE_00216	RNaseP_bact_a links to Rfam database...	0.83	0.76	0.91	62	39272	13	1	5	7	20
ASE_00217	RNaseP_bact_a links to Rfam database...	0.64	0.59	0.69	53	40393	31	1	23	7	37
ASE_00221	RNaseP_bact_a links to Rfam database...	0.64	0.59	0.69	69	64520	34	1	30	3	48
ASE_00228	RNaseP_bact_a links to Rfam database...	0.69	0.64	0.75	55	46898	26	4	14	8	31
ASE_00229	RNaseP_bact_a links to Rfam database...	0.79	0.70	0.88	61	42417	14	3	5	6	26
ASE_00231	RNaseP_bact_a links to Rfam database...	0.57	0.46	0.70	44	47832	24	1	18	5	52
ASE_00232	RNaseP_bact_a links to Rfam database...	0.82	0.73	0.92	61	38437	10	3	2	5	23
ASE_00234	RNaseP_bact_a links to Rfam database...	0.59	0.47	0.73	61	75383	27	3	19	5	68
ASE_00238	RNaseP_bact_a links to Rfam database...	0.61	0.49	0.77	56	64188	22	4	13	5	58
ASE_00241	RNaseP_bact_a links to Rfam database...	0.79	0.69	0.91	60	43890	12	1	5	6	27
ASE_00242	RNaseP_bact_a links to Rfam database...	0.71	0.67	0.76	75	60976	31	1	23	7	37
ASE_00248	RNaseP_bact_a links to Rfam database...	0.74	0.68	0.80	78	62383	26	1	19	6	36
ASE_00254	RNaseP_bact_a links to Rfam database...	0.75	0.65	0.87	53	36795	12	4	4	4	29
ASE_00255	RNaseP_bact_a links to Rfam database...	0.65	0.59	0.71	77	74583	34	3	28	3	53
ASE_00257	RNaseP_bact_a links to Rfam database...	0.60	0.52	0.70	50	50969	30	3	18	9	47
ASE_00263	RNaseP_bact_a links to Rfam database...	0.54	0.43	0.68	52	70424	27	4	20	3	68
ASE_00267	RNaseP_bact_a links to Rfam database...	0.75	0.67	0.84	59	45080	20	1	10	9	29
ASE_00270	RNaseP_bact_a links to Rfam database...	0.43	0.30	0.61	38	72328	27	1	23	3	90
ASE_00274	RNaseP_bact_a links to Rfam database...	0.66	0.50	0.85	52	55550	14	2	7	5	51
ASE_00277	RNaseP_bact_a links to Rfam database...	0.73	0.56	0.96	51	48152	6	0	2	4	40
ASE_00279	RNaseP_bact_a links to Rfam database...	0.78	0.71	0.86	72	53217	19	3	9	7	29
ASE_00280	RNaseP_bact_a links to Rfam database...	0.64	0.57	0.72	56	51925	32	1	21	10	42
ASE_00281	RNaseP_bact_a links to Rfam database...	0.81	0.74	0.89	65	44478	16	3	5	8	23
ASE_00282	RNaseP_bact_a links to Rfam database...	0.51	0.44	0.59	56	77720	43	3	36	4	71
ASE_00283	RNaseP_bact_a links to Rfam database...	0.61	0.51	0.73	55	61701	25	3	17	5	52
ASE_00284	RNaseP_bact_a links to Rfam database...	0.66	0.53	0.81	57	58241	15	2	11	2	51
ASE_00285	RNaseP_bact_a links to Rfam database...	0.58	0.48	0.70	58	68923	28	4	21	3	64
ASE_00286	RNaseP_bact_a links to Rfam database...	0.63	0.57	0.70	52	46591	31	1	21	9	40
ASE_00287	RNaseP_bact_a links to Rfam database...	0.71	0.64	0.79	66	54862	25	3	15	7	37
ASE_00292	RNaseP_bact_a links to Rfam database...	0.66	0.59	0.73	82	81697	39	2	29	8	56
ASE_00294	RNaseP_bact_a links to Rfam database...	0.68	0.59	0.79	101	114353	34	1	26	7	70
ASE_00296	RNaseP_bact_a links to Rfam database...	0.64	0.54	0.75	79	91700	32	5	22	5	66
ASE_00297	RNaseP_bact_a links to Rfam database...	0.57	0.49	0.66	48	52902	30	3	22	5	50
ASE_00298	RNaseP_bact_a links to Rfam database...	0.46	0.40	0.54	45	67445	43	7	31	5	68
ASE_00305	RNaseP_bact_b links to Rfam database...	0.70	0.65	0.75	55	54542	29	4	14	11	30
ASE_00318	RNaseP_bact_b links to Rfam database...	0.76	0.69	0.84	81	80103	31	6	10	15	37
ASE_00321	RNaseP_bact_b links to Rfam database...	0.70	0.66	0.75	58	54538	32	6	13	13	30
ASE_00328	RNaseP_bact_b links to Rfam database...	0.71	0.66	0.77	74	72675	33	5	17	11	38
ASE_00332	RNaseP_bact_a links to Rfam database...	0.81	0.74	0.89	102	81695	17	4	9	4	36
ASE_00335	RNaseP_bact_b links to Rfam database...	0.69	0.63	0.76	73	75370	33	5	18	10	43
ASE_00340	RNaseP_bact_a links to Rfam database...	0.54	0.47	0.62	40	45991	32	4	21	7	45
ASE_00342	RNaseP_bact_a links to Rfam database...	0.81	0.75	0.88	86	62383	19	1	11	7	29
ASE_00353	RNaseP_bact_a links to Rfam database...	0.64	0.54	0.75	58	57893	25	2	17	6	49
ASE_00361	RNaseP_bact_a links to Rfam database...	0.56	0.41	0.78	52	75399	19	1	14	4	75
ASE_00362	RNaseP_bact_a links to Rfam database...	0.71	0.62	0.82	56	48137	18	3	9	6	35
ASE_00363	RNaseP_bact_a links to Rfam database...	0.69	0.57	0.82	54	51294	22	2	10	10	40
ASE_00364	RNaseP_bact_a links to Rfam database...	0.67	0.58	0.76	61	54205	25	3	16	6	44
ASE_00366	RNaseP_bact_a links to Rfam database...	0.56	0.49	0.65	48	58579	29	4	22	3	50
ASE_00367	RNaseP_bact_a links to Rfam database...	0.75	0.70	0.81	60	42997	20	3	11	6	26
ASE_00369	RNaseP_bact_a links to Rfam database...	0.58	0.50	0.66	54	55863	33	1	27	5	53
ASE_00370	RNaseP_bact_a links to Rfam database...	0.87	0.82	0.92	69	41830	14	0	6	8	15
ASE_00372	RNaseP_bact_a links to Rfam database...	0.48	0.41	0.55	41	51929	36	4	29	3	59
ASE_00374	RNaseP_bact_a links to Rfam database...	0.72	0.63	0.82	55	44783	15	2	10	3	33
ASE_00376	RNaseP_bact_a links to Rfam database...	0.55	0.51	0.60	54	56863	38	3	33	2	51
ASE_00377	RNaseP_bact_a links to Rfam database...	0.78	0.69	0.88	74	57546	13	4	6	3	33
ASE_00379	RNaseP_bact_a links to Rfam database...	0.72	0.69	0.76	61	45976	22	3	16	3	28
ASE_00382	RNaseP_bact_a links to Rfam database...	0.67	0.62	0.73	52	41834	29	1	18	10	32
ASE_00383	RNaseP_bact_a links to Rfam database...	0.79	0.71	0.88	75	54530	17	2	8	7	30
ASE_00384	RNaseP_bact_a links to Rfam database...	0.61	0.53	0.71	49	48447	24	2	18	4	43
ASE_00386	RNaseP_bact_a links to Rfam database...	0.71	0.63	0.80	60	50328	22	1	14	7	36
ASE_00387	RNaseP_bact_a links to Rfam database...	0.62	0.55	0.71	57	55865	27	6	17	4	47
ASE_00388	RNaseP_bact_a links to Rfam database...	0.66	0.56	0.78	50	45689	20	1	13	6	39
ASE_00390	RNaseP_bact_a links to Rfam database...	0.77	0.68	0.87	58	42128	15	2	7	6	27
ASE_00393	RNaseP_bact_a links to Rfam database...	0.68	0.59	0.77	55	47824	21	1	15	5	38
ASE_00394	RNaseP_bact_a links to Rfam database...	0.72	0.62	0.83	58	46901	19	4	8	7	35
ASE_00395	RNaseP_bact_a links to Rfam database...	0.74	0.64	0.86	54	41553	20	1	8	11	30
ASE_00396	RNaseP_bact_a links to Rfam database...	0.71	0.63	0.80	52	41551	19	4	9	6	31
ASE_00397	RNaseP_bact_a links to Rfam database...	0.80	0.70	0.91	74	54534	12	0	7	5	31
ASE_00398	RNaseP_bact_a links to Rfam database...	0.51	0.43	0.61	45	55871	38	1	28	9	59
ASE_00400	RNaseP_bact_a links to Rfam database...	0.51	0.42	0.61	45	57896	33	3	26	4	61
ASE_00401	RNaseP_bact_a links to Rfam database...	0.50	0.40	0.62	51	76946	36	4	27	5	75
ASE_00402	RNaseP_bact_a links to Rfam database...	0.66	0.59	0.74	50	42418	21	1	17	3	35
ASE_00403	RNaseP_bact_a links to Rfam database...	0.71	0.61	0.83	65	55867	19	3	10	6	42
ASE_00404	RNaseP_bact_a links to Rfam database...	0.79	0.71	0.90	60	43004	10	0	7	3	25
ASE_00406	RNaseP_bact_a links to Rfam database...	0.65	0.56	0.76	53	48758	26	1	16	9	41
ASE_00411	RNaseP_bact_a links to Rfam database...	0.54	0.46	0.63	41	49390	27	2	22	3	48
ASE_00412	RNaseP_bact_a links to Rfam database...	0.59	0.50	0.70	52	58237	28	2	20	6	53
ASE_00413	RNaseP_bact_a links to Rfam database...	0.65	0.60	0.69	49	44480	29	5	17	7	32
ASE_00415	RNaseP_bact_a links to Rfam database...	0.42	0.35	0.51	36	54876	37	1	33	3	67
ASE_00416	RNaseP_bact_a links to Rfam database...	0.59	0.51	0.68	65	77325	36	6	25	5	62
ASE_00419	RNaseP_bact_a links to Rfam database...	0.59	0.49	0.71	50	54876	23	1	19	3	53
ASE_00422	RNaseP_bact_a links to Rfam database...	0.74	0.63	0.87	59	46903	14	2	7	5	35
ASE_00423	RNaseP_bact_a links to Rfam database...	0.83	0.77	0.89	84	56859	16	3	7	6	25
ASE_00427	RNaseP_nuc links to Rfam database...	0.47	0.43	0.50	20	40715	47	3	17	27	26
ASE_00428	RNaseP_bact_a links to Rfam database...	0.64	0.58	0.70	73	76532	38	6	25	7	52
ASE_00430	RNaseP_bact_a links to Rfam database...	0.69	0.59	0.81	57	46901	18	2	11	5	40
ASE_00437	RNaseP_bact_a links to Rfam database...	0.59	0.50	0.69	68	79302	35	0	31	4	67
ASE_00441	RNaseP_bact_a links to Rfam database...	0.44	0.34	0.58	38	64196	33	1	26	6	74
ASE_00448	RNaseP_bact_a links to Rfam database...	0.64	0.58	0.71	65	64169	33	1	26	6	47
ASE_00451	RNaseP_bact_a links to Rfam database...	0.79	0.70	0.89	87	70778	16	3	8	5	38
CRW_00548	5S_rRNA links to Rfam database...	0.74	0.68	0.81	26	7349	9	3	3	3	12
CRW_00552	5S_rRNA links to Rfam database...	0.80	0.74	0.85	29	7106	8	2	3	3	10
CRW_00555	5S_rRNA links to Rfam database...	0.91	0.83	1.00	33	7593	4	0	0	4	7
CRW_00567	5S_rRNA links to Rfam database...	0.91	0.83	1.00	33	7470	4	0	0	4	7
CRW_00570	5S_rRNA links to Rfam database...	0.85	0.84	0.86	31	6867	10	0	5	5	6
CRW_00573	5S_rRNA links to Rfam database...	0.92	0.85	1.00	34	7106	4	0	0	4	6
CRW_01484	5S_rRNA links to Rfam database...	0.89	0.85	0.94	33	7468	6	0	2	4	6
CRW_01485	5S_rRNA links to Rfam database...	0.70	0.64	0.76	25	7470	9	2	6	1	14
CRW_01487	5S_rRNA links to Rfam database...	0.79	0.73	0.86	30	7468	5	2	3	0	11
CRW_01489	5S_rRNA links to Rfam database...	0.73	0.69	0.77	27	7468	11	2	6	3	12
CRW_01491	5S_rRNA links to Rfam database...	0.85	0.77	0.94	33	8350	4	0	2	2	10
CRW_01492	5S_rRNA links to Rfam database...	0.77	0.71	0.83	30	7590	11	0	6	5	12
CRW_01494	5S_rRNA links to Rfam database...	0.73	0.65	0.81	26	7108	7	2	4	1	14
CRW_01497	5S_rRNA links to Rfam database...	0.71	0.63	0.81	25	7109	7	2	4	1	15
CRW_01498	5S_rRNA links to Rfam database...	0.89	0.81	0.97	35	8092	2	0	1	1	8
CRW_01499	5S_rRNA links to Rfam database...	0.81	0.76	0.86	31	7965	7	0	5	2	10
CRW_01500	5S_rRNA links to Rfam database...	0.74	0.68	0.81	26	7718	9	3	3	3	12
CRW_01501	5S_rRNA links to Rfam database...	0.79	0.71	0.89	32	8479	8	0	4	4	13
CRW_01508	5S_rRNA links to Rfam database...	0.84	0.79	0.89	33	7964	9	0	4	5	9
CRW_01532	5S_rRNA links to Rfam database...	0.77	0.78	0.76	29	7102	14	0	9	5	8
CRW_01533	5S_rRNA links to Rfam database...	0.92	0.92	0.92	34	7103	8	0	3	5	3
CRW_01534	5S_rRNA links to Rfam database...	0.90	0.89	0.92	33	7104	8	0	3	5	4
CRW_01535	5S_rRNA links to Rfam database...	0.92	0.92	0.92	34	7103	9	0	3	6	3
CRW_01536	5S_rRNA links to Rfam database...	0.83	0.81	0.86	30	6986	8	0	5	3	7
CRW_01537	5S_rRNA links to Rfam database...	0.76	0.76	0.76	28	7103	14	0	9	5	9
CRW_01539	5S_rRNA links to Rfam database...	0.79	0.78	0.81	29	7104	12	0	7	5	8
CRW_01540	5S_rRNA links to Rfam database...	0.78	0.78	0.78	29	7103	13	0	8	5	8
CRW_01541	5S_rRNA links to Rfam database...	0.73	0.73	0.73	27	7103	15	0	10	5	10
CRW_01542	5S_rRNA links to Rfam database...	0.77	0.76	0.78	28	7104	13	0	8	5	9
CRW_01544	5S_rRNA links to Rfam database...	0.90	0.89	0.92	33	7104	8	0	3	5	4
CRW_01548	5S_rRNA links to Rfam database...	0.77	0.76	0.78	28	6985	14	0	8	6	9
CRW_01555	5S_rRNA links to Rfam database...	0.79	0.78	0.81	29	9009	12	0	7	5	8
CRW_01556	5S_rRNA links to Rfam database...	0.92	0.92	0.92	34	7103	8	0	3	5	3
CRW_01557	5S_rRNA links to Rfam database...	0.77	0.78	0.76	29	7102	14	0	9	5	8
CRW_01559	5S_rRNA links to Rfam database...	0.75	0.73	0.77	27	7225	14	0	8	6	10
CRW_01562	5S_rRNA links to Rfam database...	0.86	0.86	0.86	32	7103	10	0	5	5	5
CRW_01563	5S_rRNA links to Rfam database...	0.89	0.89	0.89	33	6866	9	0	4	5	4
CRW_01566	5S_rRNA links to Rfam database...	0.90	0.89	0.92	33	7104	5	0	3	2	4
CRW_01568	5S_rRNA links to Rfam database...	0.90	0.89	0.92	33	7104	8	0	3	5	4
CRW_01569	5S_rRNA links to Rfam database...	0.92	0.92	0.92	34	7103	8	0	3	5	3
CRW_01570	5S_rRNA links to Rfam database...	0.77	0.78	0.76	29	7102	15	0	9	6	8
CRW_01572	5S_rRNA links to Rfam database...	0.79	0.78	0.81	29	6985	12	0	7	5	8
CRW_01573	5S_rRNA links to Rfam database...	0.90	0.89	0.92	33	7224	8	0	3	5	4
CRW_01578	5S_rRNA links to Rfam database...	0.92	0.92	0.92	34	7103	8	0	3	5	3
CRW_01580	5S_rRNA links to Rfam database...	0.81	0.81	0.81	30	7103	12	0	7	5	7
CRW_01581	5S_rRNA links to Rfam database...	0.89	0.89	0.89	33	7103	8	0	4	4	4
CRW_01583	5S_rRNA links to Rfam database...	0.81	0.81	0.81	30	7103	12	0	7	5	7
CRW_01584	5S_rRNA links to Rfam database...	0.90	0.89	0.92	33	7104	7	0	3	4	4
CRW_01590	5S_rRNA links to Rfam database...	0.92	0.92	0.92	34	7103	7	0	3	4	3
CRW_01593	5S_rRNA links to Rfam database...	0.85	0.84	0.86	31	7104	10	0	5	5	6
CRW_01595	5S_rRNA links to Rfam database...	0.76	0.76	0.76	28	8478	14	0	9	5	9
CRW_01599	5S_rRNA links to Rfam database...	0.81	0.81	0.81	30	7103	12	0	7	5	7
CRW_01603	5S_rRNA links to Rfam database...	0.88	0.86	0.89	32	7104	8	0	4	4	5
CRW_01605	5S_rRNA links to Rfam database...	0.81	0.81	0.81	30	7103	13	0	7	6	7
CRW_01606	5S_rRNA links to Rfam database...	0.89	0.89	0.89	33	7103	8	0	4	4	4
CRW_01608	5S_rRNA links to Rfam database...	0.89	0.89	0.89	33	8348	9	0	4	5	4
CRW_01616	5S_rRNA links to Rfam database...	0.85	0.84	0.86	31	7104	10	0	5	5	6
CRW_01617	5S_rRNA links to Rfam database...	0.88	0.86	0.89	32	7104	9	0	4	5	5
CRW_01620	5S_rRNA links to Rfam database...	0.88	0.86	0.89	32	6985	9	0	4	5	5
CRW_01621	5S_rRNA links to Rfam database...	0.85	0.84	0.86	31	7104	9	0	5	4	6
CRW_01623	5S_rRNA links to Rfam database...	0.78	0.78	0.78	29	7103	13	0	8	5	8
CRW_01625	5S_rRNA links to Rfam database...	0.90	0.89	0.92	33	7104	7	0	3	4	4
PDB_00012	mir-TAR links to Rfam database...	1.00	1.00	1.00	7	399	3	0	0	3	0
PDB_00070	tRNA links to Rfam database...	0.91	0.83	1.00	20	2830	0	0	0	0	4
PDB_00213	Gammaretro_CES links to Rfam database...	0.80	0.71	0.91	29	5018	3	0	3	0	12
PDB_00229	tRNA links to Rfam database...	0.91	0.83	1.00	19	2756	0	0	0	0	4
PDB_00327	tRNA links to Rfam database...	0.93	0.87	1.00	20	3061	0	0	0	0	3
PDB_00362	tRNA links to Rfam database...	0.95	0.91	1.00	20	2830	0	0	0	0	2
PDB_00402	tRNA links to Rfam database...	0.96	0.91	1.00	21	2754	1	0	0	1	2
PDB_00431	tRNA links to Rfam database...	0.92	0.85	1.00	17	2194	3	0	0	3	3
PDB_00474	tRNA links to Rfam database...	0.93	0.87	1.00	20	2681	0	0	0	0	3
PDB_00553	mir-TAR links to Rfam database...	1.00	1.00	1.00	11	454	0	0	0	0	0
PDB_00571	tRNA links to Rfam database...	0.76	0.68	0.85	17	3301	3	1	2	0	8
PDB_00667	tRNA links to Rfam database...	0.95	0.91	1.00	20	2830	2	0	0	2	2
PDB_00741	Entero_5_CRE links to Rfam database...	0.87	0.76	1.00	13	690	0	0	0	0	4
PDB_00810	s2m links to Rfam database...	0.77	0.65	0.92	11	1069	2	0	1	1	6
PDB_00828	Purine links to Rfam database...	0.86	0.74	1.00	20	2465	0	0	0	0	7
PDB_00829	Purine links to Rfam database...	0.89	0.79	1.00	19	2259	0	0	0	0	5
PDB_00876	HIV_FE links to Rfam database...	0.56	0.55	0.58	11	971	8	0	8	0	9
PDB_01002	tRNA links to Rfam database...	0.93	0.90	0.95	19	2755	2	0	1	1	2
PDB_01020	Purine links to Rfam database...	0.88	0.78	1.00	18	2260	0	0	0	0	5
PDB_01050	UnaL2 links to Rfam database...	0.96	0.92	1.00	12	618	2	0	0	2	1
PDB_01053	tRNA links to Rfam database...	1.00	1.00	1.00	16	1362	0	0	0	0	0
PDB_01073	SAM links to Rfam database...	0.81	0.76	0.87	26	4341	6	1	3	2	8
PDB_01114	TPP links to Rfam database...	0.42	0.37	0.48	10	2829	13	0	11	2	17
PDB_01152	HIV_FS2 links to Rfam database...	0.85	0.79	0.92	11	549	1	0	1	0	3
PDB_01236	ykoK links to Rfam database...	0.81	0.74	0.89	40	11583	8	0	5	3	14
RFA_00389	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	1	0	0	1	0
RFA_00390	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	1	0	0	1	1
RFA_00391	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	1	0	0	1	1
RFA_00396	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	1	0	0	1	0
RFA_00402	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	1	0	0	1	1
RFA_00409	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	1	0	0	1	1
RFA_00416	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1471	1	0	0	1	1
RFA_00433	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	1	0	0	1	1
RFA_00434	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	1	0	0	1	0
RFA_00436	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	1	0	0	1	0
RFA_00440	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1470	1	0	0	1	0
RFA_00442	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	1	0	0	1	1
RFA_00444	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1525	1	0	0	1	0
RFA_00583	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4935	16	0	0	16	0
RFA_00584	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	2911	14	0	0	14	0
RFA_00585	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4836	15	0	0	15	0
RFA_00586	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	3901	17	0	0	17	0
RFA_00587	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4836	15	0	0	15	0
RFA_00588	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4545	13	0	0	13	0
RFA_00589	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4356	14	0	0	14	0
RFA_00594	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	2760	12	0	0	12	0
RFA_00596	Y_RNA links to Rfam database...	0.97	0.93	1.00	14	5981	20	0	0	20	1
RFA_00599	Telomerase-vert links to Rfam database...	0.55	0.52	0.58	58	101375	62	5	37	20	53
RFA_00601	Telomerase-vert links to Rfam database...	0.81	0.80	0.81	91	99123	42	5	16	21	23
RFA_00602	Telomerase-vert links to Rfam database...	0.72	0.72	0.73	83	101361	51	6	25	20	33
RFA_00658	Hammerhead_1 links to Rfam database...	0.64	0.57	0.73	8	1117	5	0	3	2	6
RFA_00664	Hammerhead_1 links to Rfam database...	0.61	0.57	0.67	8	978	5	0	4	1	6
RFA_00667	Hammerhead_1 links to Rfam database...	0.61	0.57	0.67	8	978	5	0	4	1	6
RFA_00668	Hammerhead_1 links to Rfam database...	0.61	0.57	0.67	8	978	5	0	4	1	6
RFA_00672	Hammerhead_1 links to Rfam database...	0.72	0.69	0.75	9	891	4	0	3	1	4
RFA_00673	Hammerhead_1 links to Rfam database...	0.64	0.57	0.73	8	1117	6	0	3	3	6
RFA_00674	Hammerhead_1 links to Rfam database...	0.69	0.64	0.75	9	1116	4	0	3	1	5
RFA_00675	Hammerhead_1 links to Rfam database...	0.69	0.64	0.75	9	978	4	0	3	1	5
RFA_00677	Hammerhead_1 links to Rfam database...	0.69	0.64	0.75	9	978	4	0	3	1	5
RFA_00678	Hammerhead_1 links to Rfam database...	0.61	0.57	0.67	8	934	5	0	4	1	6
RFA_00680	Hammerhead_1 links to Rfam database...	0.64	0.57	0.73	8	1117	5	0	3	2	6
RFA_00704	Hammerhead_1 links to Rfam database...	0.61	0.57	0.67	8	978	5	0	4	1	6
RFA_00707	Hammerhead_1 links to Rfam database...	0.61	0.57	0.67	8	1023	5	0	4	1	6
RFA_00715	Hammerhead_1 links to Rfam database...	0.56	0.50	0.64	7	935	5	0	4	1	7
RFA_00717	Hammerhead_1 links to Rfam database...	0.69	0.64	0.75	9	891	3	0	3	0	5
RFA_00730	s2m links to Rfam database...	0.92	0.92	0.92	11	891	2	0	1	1	1
RFA_00731	s2m links to Rfam database...	1.00	1.00	1.00	12	891	1	0	0	1	0
RFA_00733	s2m links to Rfam database...	0.66	0.67	0.67	8	891	5	1	3	1	4
RFA_00734	s2m links to Rfam database...	0.92	0.92	0.92	11	891	2	0	1	1	1
RFA_00736	s2m links to Rfam database...	1.00	1.00	1.00	12	891	1	0	0	1	0
RFA_00737	s2m links to Rfam database...	0.92	0.92	0.92	11	891	2	0	1	1	1
RFA_00745	s2m links to Rfam database...	1.00	1.00	1.00	12	934	1	0	0	1	0
RFA_00749	s2m links to Rfam database...	1.00	1.00	1.00	12	891	1	0	0	1	0
RFA_00758	s2m links to Rfam database...	1.00	1.00	1.00	12	891	1	0	0	1	0
RFA_00762	s2m links to Rfam database...	1.00	1.00	1.00	12	891	1	0	0	1	0
RFA_00763	s2m links to Rfam database...	0.92	0.92	0.92	11	891	2	0	1	1	1
RFA_00764	s2m links to Rfam database...	1.00	1.00	1.00	12	891	1	0	0	1	0
RFA_00765	s2m links to Rfam database...	1.00	1.00	1.00	12	891	1	0	0	1	0
RFA_00786	Gammaretro_CES links to Rfam database...	0.92	0.91	0.94	29	5019	3	2	0	1	3
RFA_00791	Gammaretro_CES links to Rfam database...	0.86	0.84	0.87	27	5120	5	2	2	1	5
RFA_00792	Gammaretro_CES links to Rfam database...	0.94	0.94	0.94	30	5018	3	2	0	1	2
RFA_00801	Gammaretro_CES links to Rfam database...	0.91	0.91	0.91	29	5018	4	2	1	1	3
SPR_00007	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	2	0	0	2	1
SPR_00009	tRNA links to Rfam database...	0.87	0.85	0.89	17	2831	4	0	2	2	3
SPR_00010	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	2	0	0	2	1
SPR_00012	tRNA links to Rfam database...	0.87	0.85	0.89	17	2831	5	0	2	3	3
SPR_00013	tRNA links to Rfam database...	0.97	0.95	1.00	19	2831	2	0	0	2	1
SPR_00016	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	2	0	0	2	1
SPR_00017	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	2	0	0	2	0
SPR_00025	tRNA links to Rfam database...	0.97	0.95	1.00	19	2907	1	0	0	1	1
SPR_00026	tRNA links to Rfam database...	0.98	0.95	1.00	20	2906	1	0	0	1	1
SPR_00027	tRNA links to Rfam database...	0.98	0.95	1.00	20	2906	2	0	0	2	1
SPR_00036	tRNA links to Rfam database...	0.87	0.75	1.00	15	2760	3	0	0	3	5
SPR_00045	tRNA links to Rfam database...	0.98	0.95	1.00	21	2829	2	0	0	2	1
SPR_00064	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00065	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	1	0	0	1	0
SPR_00066	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	2	0	0	2	1
SPR_00068	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00070	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00074	tRNA links to Rfam database...	0.97	0.95	1.00	19	2831	1	0	0	1	1
SPR_00079	tRNA links to Rfam database...	0.95	0.89	1.00	17	2468	2	0	0	2	2
SPR_00086	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	2	0	0	2	1
SPR_00087	tRNA links to Rfam database...	0.97	0.95	1.00	19	2831	1	0	0	1	1
SPR_00088	tRNA links to Rfam database...	0.97	0.95	1.00	19	2831	2	0	0	2	1
SPR_00089	tRNA links to Rfam database...	0.97	0.95	1.00	19	2831	1	0	0	1	1
SPR_00090	tRNA links to Rfam database...	0.97	0.95	1.00	19	2831	1	0	0	1	1
SPR_00091	tRNA links to Rfam database...	0.97	0.95	1.00	19	2831	2	0	0	2	1
SPR_00095	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00111	tRNA links to Rfam database...	0.98	0.95	1.00	20	2681	2	0	0	2	1
SPR_00112	tRNA links to Rfam database...	1.00	1.00	1.00	21	2680	2	0	0	2	0
SPR_00115	tRNA links to Rfam database...	0.98	0.95	1.00	20	2681	2	0	0	2	1
SPR_00117	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	2	0	0	2	1
SPR_00139	tRNA links to Rfam database...	0.95	0.90	1.00	19	2907	3	0	0	3	2
SPR_00153	tRNA links to Rfam database...	0.98	0.95	1.00	20	2906	2	0	0	2	1
SPR_00155	tRNA links to Rfam database...	0.98	0.95	1.00	20	2906	0	0	0	0	1
SPR_00156	tRNA links to Rfam database...	0.98	0.95	1.00	20	2906	0	0	0	0	1
SPR_00176	tRNA links to Rfam database...	0.97	0.95	1.00	19	2831	1	0	0	1	1
SPR_00177	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00178	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00191	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	1	0	0	1	1
SPR_00200	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00224	tRNA links to Rfam database...	0.97	0.95	1.00	19	3722	2	0	0	2	1
SPR_00271	tRNA links to Rfam database...	0.88	0.86	0.90	18	2830	2	0	2	0	3
SPR_00273	tRNA links to Rfam database...	0.73	0.71	0.75	15	2830	5	0	5	0	6
SPR_00276	tRNA links to Rfam database...	0.98	0.95	1.00	20	2906	0	0	0	0	1
SPR_00277	tRNA links to Rfam database...	0.98	0.95	1.00	20	2906	1	0	0	1	1
SPR_00294	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00295	tRNA links to Rfam database...	0.98	0.95	1.00	20	2755	0	0	0	0	1
SPR_00314	tRNA links to Rfam database...	0.98	0.95	1.00	20	2906	2	0	0	2	1
SPR_00315	tRNA links to Rfam database...	0.98	0.95	1.00	20	2906	2	0	0	2	1
SPR_00317	tRNA links to Rfam database...	0.71	0.75	0.68	15	2904	10	0	7	3	5
SPR_00318	tRNA links to Rfam database...	0.98	0.95	1.00	20	2906	2	0	0	2	1
SPR_00321	tRNA links to Rfam database...	0.98	0.95	1.00	20	2983	4	0	0	4	1
SPR_00333	tRNA links to Rfam database...	0.83	0.81	0.85	17	2755	3	0	3	0	4
SPR_00352	tRNA links to Rfam database...	0.80	0.76	0.84	16	2907	4	0	3	1	5
SPR_00353	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	1	0	0	1	1
SPR_00357	tRNA links to Rfam database...	0.98	0.95	1.00	20	2906	1	0	0	1	1
SPR_00358	tRNA links to Rfam database...	0.97	0.95	1.00	19	2907	3	0	0	3	1
SPR_00370	tRNA links to Rfam database...	0.98	0.95	1.00	20	2755	0	0	0	0	1
SPR_00386	tRNA links to Rfam database...	0.87	0.85	0.89	17	4167	8	0	2	6	3
SPR_00414	tRNA links to Rfam database...	0.74	0.76	0.73	16	3548	9	2	4	3	5
SPR_00415	tRNA links to Rfam database...	0.74	0.76	0.73	16	3548	9	2	4	3	5
SPR_00417	tRNA links to Rfam database...	0.73	0.73	0.73	16	3548	9	2	4	3	6
SPR_00418	tRNA links to Rfam database...	0.73	0.73	0.73	16	3548	11	1	5	5	6
SPR_00434	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	2	0	0	2	1
SPR_00435	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00436	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	2	0	0	2	1
SPR_00437	tRNA links to Rfam database...	0.95	0.90	1.00	19	2756	2	0	0	2	2
SPR_00438	tRNA links to Rfam database...	0.98	0.95	1.00	20	2755	2	0	0	2	1
SPR_00452	tRNA links to Rfam database...	0.83	0.81	0.85	17	2830	5	0	3	2	4
SPR_00455	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	2	0	0	2	0
SPR_00456	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	2	0	0	2	1
SPR_00476	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	2	0	0	2	0
SPR_00479	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00482	tRNA links to Rfam database...	1.00	1.00	1.00	21	2680	0	0	0	0	0
SPR_00483	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00487	tRNA links to Rfam database...	0.95	0.91	1.00	20	2681	0	0	0	0	2
SPR_00493	tRNA links to Rfam database...	0.98	0.95	1.00	21	2754	0	0	0	0	1
SPR_00496	tRNA links to Rfam database...	0.98	0.95	1.00	20	2755	1	0	0	1	1
SPR_00497	tRNA links to Rfam database...	0.98	0.95	1.00	20	2755	2	0	0	2	1
SPR_00502	tRNA links to Rfam database...	0.95	0.90	1.00	19	2907	0	0	0	0	2
SPR_00504	tRNA links to Rfam database...	0.97	0.95	1.00	19	2831	1	0	0	1	1
SPR_00505	tRNA links to Rfam database...	0.97	0.95	1.00	19	2907	2	0	0	2	1
SPR_00506	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	1	0	0	1	0
SPR_00509	tRNA links to Rfam database...	0.97	0.95	1.00	19	2907	1	0	0	1	1
SPR_00512	tRNA links to Rfam database...	0.95	0.90	1.00	18	2908	1	0	0	1	2
SPR_00513	tRNA links to Rfam database...	0.97	0.95	1.00	19	2907	1	0	0	1	1
SPR_00518	tRNA links to Rfam database...	0.97	0.95	1.00	19	2907	1	0	0	1	1
SPR_00548	tRNA links to Rfam database...	0.82	0.86	0.78	18	3380	5	2	3	0	3
SPR_00557	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00561	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00590	tRNA links to Rfam database...	0.78	0.80	0.76	16	2982	7	1	4	2	4
SPR_00593	tRNA links to Rfam database...	0.80	0.84	0.76	16	2754	9	1	4	4	3
SPR_00595	tRNA links to Rfam database...	0.98	0.95	1.00	20	2755	0	0	0	0	1
SPR_00598	tRNA links to Rfam database...	0.85	0.76	0.94	16	2986	1	0	1	0	5
SPR_00610	tRNA links to Rfam database...	0.85	0.76	0.94	16	2539	2	0	1	1	5
SPR_00620	tRNA links to Rfam database...	0.90	0.86	0.95	18	2984	1	0	1	0	3
SPR_00721	tRNA links to Rfam database...	0.98	0.95	1.00	20	2906	2	0	0	2	1
SPR_00722	tRNA links to Rfam database...	0.97	0.95	1.00	19	2907	1	0	0	1	1
SPR_00758	tRNA links to Rfam database...	0.95	0.90	1.00	19	2984	0	0	0	0	2
SPR_00760	tRNA links to Rfam database...	0.88	0.86	0.90	18	3550	2	0	2	0	3
SPR_00777	tRNA links to Rfam database...	0.97	0.95	1.00	19	2609	1	0	0	1	1
SPR_00867	tRNA links to Rfam database...	0.98	0.95	1.00	20	2906	0	0	0	0	1
SPR_00868	tRNA links to Rfam database...	0.98	0.95	1.00	20	2906	0	0	0	0	1
SPR_00943	tRNA links to Rfam database...	0.92	0.90	0.95	18	2537	3	0	1	2	2
SPR_00957	tRNA links to Rfam database...	0.73	0.76	0.70	16	2980	8	2	5	1	5
SPR_01040	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	1	0	0	1	0
SPR_01088	tRNA links to Rfam database...	0.98	0.95	1.00	20	2906	0	0	0	0	1
SPR_01095	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_01106	tRNA links to Rfam database...	0.98	0.95	1.00	20	2536	2	0	0	2	1
SPR_01117	tRNA links to Rfam database...	0.83	0.81	0.85	17	2983	3	0	3	0	4
SPR_01157	tRNA links to Rfam database...	0.80	0.76	0.84	16	2756	4	0	3	1	5
SRP_00006	Metazoa_SRP links to Rfam database...	0.61	0.59	0.62	60	45656	43	0	37	6	41
SRP_00008	Bacteria_small_SRP links to Rfam database...	0.85	0.80	0.91	20	2904	4	0	2	2	5
SRP_00011	Plant_SRP links to Rfam database...	0.78	0.75	0.81	78	46264	28	0	18	10	26
SRP_00015	Plant_SRP links to Rfam database...	0.91	0.88	0.95	87	46268	20	0	5	15	12
SRP_00020	Bacteria_small_SRP links to Rfam database...	0.88	0.88	0.88	29	5532	5	1	3	1	4
SRP_00024	Bacteria_large_SRP links to Rfam database...	0.82	0.76	0.88	66	37600	13	0	9	4	21
SRP_00026	Bacteria_large_SRP links to Rfam database...	0.81	0.74	0.89	65	36783	17	0	8	9	23
SRP_00027	Bacteria_large_SRP links to Rfam database...	0.84	0.77	0.92	67	37055	14	0	6	8	20
SRP_00030	Bacteria_large_SRP links to Rfam database...	0.83	0.77	0.89	68	36780	11	0	8	3	20
SRP_00031	Bacteria_large_SRP links to Rfam database...	0.83	0.76	0.89	68	36239	11	0	8	3	21
SRP_00037	Bacteria_large_SRP links to Rfam database...	0.76	0.74	0.78	64	36503	24	3	15	6	23
SRP_00038	Bacteria_small_SRP links to Rfam database...	0.45	0.45	0.45	15	5017	18	1	17	0	18
SRP_00042	Bacteria_small_SRP links to Rfam database...	0.52	0.48	0.57	12	3984	10	4	5	1	13
SRP_00044	Bacteria_small_SRP links to Rfam database...	0.83	0.84	0.82	27	6072	7	1	5	1	5
SRP_00046	Bacteria_small_SRP links to Rfam database...	0.47	0.22	1.00	7	4746	0	0	0	0	25
SRP_00050	Metazoa_SRP links to Rfam database...	0.91	0.89	0.93	88	44755	18	0	7	11	11
SRP_00051	Bacteria_small_SRP links to Rfam database...	0.57	0.50	0.65	15	5437	10	0	8	2	15
SRP_00054	Bacteria_small_SRP links to Rfam database...	0.51	0.41	0.65	13	5545	7	0	7	0	19
SRP_00058	Bacteria_small_SRP links to Rfam database...	0.90	0.88	0.91	30	5745	3	1	2	0	4
SRP_00066	Metazoa_SRP links to Rfam database...	0.82	0.79	0.86	79	45359	22	0	13	9	21
SRP_00072	Bacteria_small_SRP links to Rfam database...	0.49	0.24	1.00	7	6321	0	0	0	0	22
SRP_00074	Bacteria_small_SRP links to Rfam database...	0.46	0.24	0.88	7	6547	1	0	1	0	22
SRP_00075	Bacteria_small_SRP links to Rfam database...	0.36	0.18	0.75	6	5557	3	0	2	1	28
SRP_00077	Bacteria_small_SRP links to Rfam database...	0.43	0.19	1.00	7	6663	0	0	0	0	30
SRP_00081	Bacteria_small_SRP links to Rfam database...	0.47	0.23	1.00	7	5558	0	0	0	0	24
SRP_00084	Bacteria_small_SRP links to Rfam database...	0.86	0.85	0.88	29	5427	4	1	3	0	5
SRP_00086	Metazoa_SRP links to Rfam database...	0.91	0.91	0.92	91	44154	17	0	8	9	9
SRP_00088	Bacteria_large_SRP links to Rfam database...	0.82	0.74	0.92	66	34119	9	0	6	3	23
SRP_00089	Bacteria_large_SRP links to Rfam database...	0.80	0.73	0.88	66	35703	14	1	8	5	24
SRP_00090	Bacteria_large_SRP links to Rfam database...	0.76	0.68	0.86	61	35440	14	1	9	4	29
SRP_00094	Bacteria_small_SRP links to Rfam database...	0.80	0.83	0.77	20	4069	8	1	5	2	4
SRP_00095	Bacteria_small_SRP links to Rfam database...	0.40	0.40	0.40	10	3980	15	4	11	0	15
SRP_00098	Bacteria_small_SRP links to Rfam database...	0.64	0.59	0.69	22	6409	12	1	9	2	15
SRP_00102	Metazoa_SRP links to Rfam database...	0.90	0.88	0.93	89	44455	15	0	7	8	12
SRP_00103	Metazoa_SRP links to Rfam database...	0.96	0.94	0.97	96	45352	12	0	3	9	6
SRP_00105	Bacteria_small_SRP links to Rfam database...	0.45	0.21	1.00	7	5558	0	0	0	0	27
SRP_00107	Bacteria_small_SRP links to Rfam database...	0.34	0.32	0.38	6	3639	12	1	9	2	13
SRP_00121	Bacteria_small_SRP links to Rfam database...	0.73	0.64	0.84	16	4259	3	0	3	0	9
SRP_00128	Bacteria_small_SRP links to Rfam database...	0.84	0.78	0.90	28	6755	4	1	2	1	8
SRP_00132	Bacteria_small_SRP links to Rfam database...	0.49	0.24	1.00	7	4844	0	0	0	0	22
SRP_00134	Bacteria_large_SRP links to Rfam database...	0.68	0.69	0.67	20	5965	17	0	10	7	9
SRP_00141	Bacteria_small_SRP links to Rfam database...	0.77	0.66	0.90	27	6298	5	1	2	2	14
SRP_00152	Plant_SRP links to Rfam database...	0.88	0.85	0.91	88	45656	20	1	8	11	15
SRP_00161	Bacteria_small_SRP links to Rfam database...	0.89	0.91	0.87	20	2827	3	0	3	0	2
SRP_00162	Bacteria_small_SRP links to Rfam database...	0.84	0.83	0.86	19	2904	3	0	3	0	4
SRP_00163	Bacteria_small_SRP links to Rfam database...	0.72	0.62	0.84	16	3467	3	0	3	0	10
SRP_00164	Bacteria_small_SRP links to Rfam database...	0.78	0.69	0.89	24	6876	8	1	2	5	11
SRP_00170	Bacteria_small_SRP links to Rfam database...	0.45	0.48	0.43	12	4067	17	2	14	1	13
SRP_00171	Metazoa_SRP links to Rfam database...	0.90	0.88	0.93	77	45368	24	0	6	18	11
SRP_00173	Bacteria_large_SRP links to Rfam database...	0.81	0.73	0.89	66	38152	15	0	8	7	24
SRP_00174	Bacteria_large_SRP links to Rfam database...	0.75	0.67	0.84	58	38712	12	0	11	1	28
SRP_00178	Plant_SRP links to Rfam database...	0.89	0.86	0.92	88	45657	16	0	8	8	14
SRP_00179	Plant_SRP links to Rfam database...	0.91	0.88	0.95	92	45959	17	0	5	12	13
SRP_00181	Plant_SRP links to Rfam database...	0.83	0.81	0.84	83	45957	24	0	16	8	19
SRP_00182	Plant_SRP links to Rfam database...	0.88	0.86	0.90	87	45959	19	0	10	9	14
SRP_00184	Plant_SRP links to Rfam database...	0.81	0.79	0.82	79	45960	27	0	17	10	21
SRP_00188	Plant_SRP links to Rfam database...	0.74	0.67	0.83	53	31061	16	1	10	5	26
SRP_00194	Bacteria_small_SRP links to Rfam database...	0.74	0.76	0.73	16	3218	8	0	6	2	5
SRP_00200	Bacteria_small_SRP links to Rfam database...	0.79	0.75	0.84	27	6871	7	1	4	2	9
SRP_00209	Bacteria_small_SRP links to Rfam database...	0.76	0.78	0.75	21	4628	7	1	6	0	6
SRP_00213	Bacteria_small_SRP links to Rfam database...	0.54	0.52	0.57	13	4163	10	3	7	0	12
SRP_00215	Bacteria_small_SRP links to Rfam database...	0.60	0.36	1.00	9	3231	0	0	0	0	16
SRP_00227	Bacteria_small_SRP links to Rfam database...	0.87	0.87	0.87	27	5120	7	1	3	3	4
SRP_00228	Metazoa_SRP links to Rfam database...	0.90	0.88	0.91	84	45359	21	0	8	13	11
SRP_00231	Bacteria_small_SRP links to Rfam database...	0.93	0.94	0.91	32	5425	3	1	2	0	2
SRP_00233	Bacteria_small_SRP links to Rfam database...	0.80	0.64	1.00	21	5130	0	0	0	0	12
SRP_00234	Bacteria_large_SRP links to Rfam database...	0.74	0.71	0.78	61	36237	26	2	15	9	25
SRP_00250	Bacteria_small_SRP links to Rfam database...	0.81	0.78	0.85	28	6753	7	1	4	2	8
SRP_00251	Bacteria_small_SRP links to Rfam database...	0.81	0.75	0.87	27	6990	5	1	3	1	9
SRP_00266	Bacteria_small_SRP links to Rfam database...	0.63	0.55	0.73	16	4634	7	0	6	1	13
SRP_00268	Bacteria_small_SRP links to Rfam database...	0.89	0.89	0.89	24	4159	4	1	2	1	3
SRP_00269	Bacteria_small_SRP links to Rfam database...	0.98	0.97	1.00	32	5018	1	0	0	1	1
SRP_00270	Bacteria_small_SRP links to Rfam database...	0.80	0.65	1.00	20	4636	1	0	0	1	11
SRP_00271	Bacteria_small_SRP links to Rfam database...	0.82	0.67	1.00	16	3224	0	0	0	0	8
SRP_00273	Bacteria_small_SRP links to Rfam database...	0.84	0.75	0.94	30	6754	5	1	1	3	10
SRP_00274	Bacteria_small_SRP links to Rfam database...	0.86	0.79	0.94	30	6871	3	1	1	1	8
SRP_00295	Bacteria_small_SRP links to Rfam database...	0.80	0.71	0.90	27	6873	6	1	2	3	11
SRP_00303	Bacteria_small_SRP links to Rfam database...	0.74	0.72	0.77	23	6640	10	1	6	3	9
SRP_00308	Bacteria_large_SRP links to Rfam database...	0.73	0.73	0.74	64	36228	33	3	20	10	24
SRP_00310	Bacteria_small_SRP links to Rfam database...	0.87	0.87	0.87	20	2903	3	0	3	0	3
SRP_00312	Bacteria_small_SRP links to Rfam database...	0.57	0.52	0.64	14	4164	9	1	7	1	13
SRP_00315	Bacteria_small_SRP links to Rfam database...	0.87	0.87	0.87	20	2903	3	0	3	0	3
SRP_00317	Metazoa_SRP links to Rfam database...	0.88	0.86	0.91	84	45058	21	0	8	13	14
SRP_00318	Bacteria_small_SRP links to Rfam database...	0.87	0.87	0.87	20	2980	3	0	3	0	3
SRP_00325	Bacteria_small_SRP links to Rfam database...	0.97	0.94	1.00	31	4340	1	0	0	1	2
SRP_00326	Bacteria_small_SRP links to Rfam database...	0.92	0.84	1.00	26	5024	2	0	0	2	5
SRP_00333	Bacteria_small_SRP links to Rfam database...	0.79	0.68	0.92	23	5126	2	0	2	0	11
SRP_00335	Bacteria_large_SRP links to Rfam database...	0.54	0.44	0.68	17	35220	17	4	4	9	22
SRP_00337	Bacteria_large_SRP links to Rfam database...	0.71	0.71	0.71	65	35420	30	3	23	4	26
SRP_00338	Bacteria_small_SRP links to Rfam database...	0.89	0.86	0.91	31	5426	3	0	3	0	5
SRP_00341	Bacteria_small_SRP links to Rfam database...	0.44	0.23	0.88	7	4745	1	0	1	0	24
SRP_00342	Bacteria_small_SRP links to Rfam database...	0.42	0.24	0.75	6	3997	3	0	2	1	19
SRP_00347	Metazoa_SRP links to Rfam database...	0.98	0.97	0.99	93	46571	15	0	1	14	3
SRP_00350	Bacteria_small_SRP links to Rfam database...	0.42	0.44	0.41	12	3887	17	2	15	0	15
SRP_00357	Bacteria_small_SRP links to Rfam database...	0.88	0.83	0.94	30	5324	3	1	1	1	6
SRP_00358	Bacteria_small_SRP links to Rfam database...	0.83	0.77	0.90	27	6298	5	1	2	2	8
SRP_00367	Bacteria_small_SRP links to Rfam database...	0.74	0.63	0.88	22	6761	4	1	2	1	13
SRP_00368	Metazoa_SRP links to Rfam database...	0.91	0.89	0.93	87	43862	20	0	7	13	11
SRP_00369	Bacteria_small_SRP links to Rfam database...	0.82	0.74	0.90	26	5749	5	1	2	2	9
SRP_00383	Bacteria_small_SRP links to Rfam database...	0.39	0.33	0.47	8	3223	9	0	9	0	16
TMR_00017	tmRNA links to Rfam database...	0.55	0.52	0.59	53	67071	42	16	21	5	49
TMR_00018	tmRNA links to Rfam database...	0.48	0.48	0.49	44	64530	48	21	25	2	48
TMR_00038	tmRNA links to Rfam database...	0.70	0.62	0.80	68	71168	24	8	9	7	42
TMR_00042	tmRNA links to Rfam database...	0.56	0.55	0.56	54	62739	48	11	31	6	44
TMR_00046	tmRNA links to Rfam database...	0.56	0.55	0.57	53	62742	46	5	35	6	43
TMR_00048	tmRNA links to Rfam database...	0.53	0.52	0.55	49	64891	48	7	33	8	46
TMR_00080	tmRNA links to Rfam database...	0.49	0.50	0.48	48	70399	54	25	28	1	48
TMR_00082	tmRNA links to Rfam database...	0.44	0.44	0.45	42	67803	53	17	34	2	54
TMR_00123	tmRNA links to Rfam database...	0.66	0.53	0.81	54	66363	23	2	11	10	47
TMR_00137	tmRNA links to Rfam database...	0.37	0.36	0.39	32	60992	53	18	33	2	57
TMR_00142	tmRNA links to Rfam database...	0.51	0.50	0.52	51	70778	53	14	33	6	51
TMR_00207	tmRNA links to Rfam database...	0.49	0.49	0.49	50	72288	54	16	36	2	53
TMR_00257	tmRNA links to Rfam database...	0.54	0.49	0.59	48	67080	38	10	23	5	50
TMR_00271	tmRNA links to Rfam database...	0.43	0.37	0.49	34	64192	38	11	24	3	57
TMR_00332	tmRNA links to Rfam database...	0.53	0.51	0.55	50	67070	43	15	26	2	49
TMR_00366	tmRNA links to Rfam database...	0.60	0.56	0.65	56	67810	43	8	22	13	44
TMR_00378	tmRNA links to Rfam database...	0.65	0.60	0.70	58	67813	36	10	15	11	39
TMR_00399	tmRNA links to Rfam database...	0.38	0.35	0.40	33	64898	53	16	33	4	61
TMR_00404	tmRNA links to Rfam database...	0.48	0.47	0.49	43	67441	54	14	30	10	49
TMR_00427	tmRNA links to Rfam database...	0.56	0.52	0.60	50	67445	36	15	18	3	47
TMR_00443	tmRNA links to Rfam database...	0.59	0.55	0.63	57	67070	36	15	19	2	47
TMR_00451	tmRNA links to Rfam database...	0.34	0.34	0.34	30	63459	58	21	36	1	59
TMR_00458	tmRNA links to Rfam database...	0.39	0.38	0.41	35	63460	51	20	31	0	58
TMR_00469	tmRNA links to Rfam database...	0.62	0.60	0.65	60	64527	38	14	19	5	40
TMR_00472	tmRNA links to Rfam database...	0.56	0.47	0.67	46	64551	34	12	11	11	51
TMR_00519	tmRNA links to Rfam database...	0.38	0.40	0.37	38	63086	68	19	47	2	57
TMR_00520	tmRNA links to Rfam database...	0.43	0.41	0.46	41	63100	51	12	37	2	58
TMR_00522	tmRNA links to Rfam database...	0.46	0.44	0.49	43	63102	45	17	28	0	54
TMR_00528	tmRNA links to Rfam database...	0.39	0.40	0.38	39	63088	65	19	44	2	58
TMR_00540	tmRNA links to Rfam database...	0.48	0.48	0.48	50	73431	56	17	38	1	54
TMR_00568	tmRNA links to Rfam database...	0.57	0.53	0.61	52	60641	45	4	29	12	47
TMR_00571	tmRNA links to Rfam database...	0.60	0.56	0.65	55	60641	42	5	25	12	44
TMR_00580	tmRNA links to Rfam database...	0.60	0.52	0.69	52	60651	33	3	20	10	48
TMR_00584	tmRNA links to Rfam database...	0.61	0.57	0.66	55	60992	39	5	23	11	42
TMR_00586	tmRNA links to Rfam database...	0.58	0.55	0.62	53	60989	42	6	27	9	44
TMR_00616	tmRNA links to Rfam database...	0.58	0.47	0.71	47	67095	24	9	10	5	52
TMR_00699	tmRNA links to Rfam database...	0.55	0.50	0.60	51	67076	37	10	24	3	51
TMR_00702	tmRNA links to Rfam database...	0.52	0.50	0.55	50	67070	43	14	27	2	50
TMR_00703	tmRNA links to Rfam database...	0.54	0.49	0.58	49	67444	39	13	22	4	50

^top

Performance of CMfinder(20) - scored lower in this pairwise comparison

1. Total counts & total scores for CMfinder(20)

Total Base Pair Counts
Total TP	12594
Total TN	15431933
Total FP	3841
Total FP CONTRA	280
Total FP INCONS	2978
Total FP COMP	583
Total FN	20541

Total Scores
MCC	0.549
Average MCC ± 95% Confidence Intervals	0.621 ± 0.019
Sensitivity	0.380
Positive Predictive Value	0.794
Nr of predictions	561

^top

2. Individual counts for CMfinder(20) [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00004	RNaseP_bact_a links to Rfam database...	0.50	0.29	0.88	28	47863	4	0	4	0	69
ASE_00005	RNaseP_bact_a links to Rfam database...	0.41	0.26	0.67	30	57925	15	0	15	0	87
ASE_00006	RNaseP_bact_a links to Rfam database...	0.54	0.40	0.74	37	47536	13	1	12	0	56
ASE_00007	RNaseP_bact_a links to Rfam database...	0.64	0.48	0.85	53	59623	11	1	8	2	57
ASE_00012	RNaseP_bact_a links to Rfam database...	0.41	0.18	0.96	22	73897	1	0	1	0	101
ASE_00018	RNaseP_bact_a links to Rfam database...	0.55	0.40	0.75	54	80529	20	1	17	2	80
ASE_00020	RNaseP_bact_a links to Rfam database...	0.40	0.24	0.68	30	73876	16	1	13	2	96
ASE_00021	RNaseP_bact_a links to Rfam database...	0.37	0.18	0.80	28	104161	7	1	6	0	132
ASE_00022	RNaseP_bact_b links to Rfam database...	0.45	0.28	0.71	35	82979	14	1	13	0	89
ASE_00028	RNaseP_bact_b links to Rfam database...	0.59	0.41	0.84	52	84604	11	3	7	1	74
ASE_00035	RNaseP_bact_a links to Rfam database...	0.46	0.29	0.74	34	70454	12	1	11	0	84
ASE_00037	RNaseP_bact_a links to Rfam database...	0.55	0.42	0.72	46	59276	18	0	18	0	64
ASE_00038	RNaseP_bact_a links to Rfam database...	0.51	0.37	0.73	37	53577	14	1	13	0	64
ASE_00040	RNaseP_bact_a links to Rfam database...	0.44	0.24	0.80	32	78963	9	1	7	1	101
ASE_00041	RNaseP_bact_a links to Rfam database...	0.54	0.38	0.77	41	57577	12	0	12	0	67
ASE_00042	RNaseP_bact_a links to Rfam database...	0.40	0.18	0.90	26	90071	3	0	3	0	119
ASE_00044	RNaseP_bact_a links to Rfam database...	0.45	0.29	0.71	30	54573	13	0	12	1	75
ASE_00045	RNaseP_bact_b links to Rfam database...	0.59	0.46	0.76	37	47229	12	2	10	0	43
ASE_00064	RNaseP_bact_a links to Rfam database...	0.48	0.30	0.75	27	45415	10	1	8	1	62
ASE_00068	RNaseP_bact_a links to Rfam database...	0.61	0.44	0.86	37	37632	6	0	6	0	48
ASE_00074	RNaseP_bact_a links to Rfam database...	0.63	0.44	0.91	52	67839	6	0	5	1	67
ASE_00075	RNaseP_bact_a links to Rfam database...	0.37	0.17	0.80	28	108776	7	1	6	0	134
ASE_00077	RNaseP_bact_a links to Rfam database...	0.59	0.36	0.97	31	45118	1	0	1	0	55
ASE_00078	RNaseP_bact_a links to Rfam database...	0.72	0.61	0.84	51	43010	11	1	9	1	32
ASE_00080	RNaseP_bact_a links to Rfam database...	0.37	0.24	0.58	30	71579	22	0	22	0	93
ASE_00081	RNaseP_bact_a links to Rfam database...	0.51	0.31	0.86	30	49735	6	0	5	1	67
ASE_00082	RNaseP_bact_a links to Rfam database...	0.56	0.39	0.82	45	70445	17	0	10	7	71
ASE_00083	RNaseP_bact_a links to Rfam database...	0.50	0.27	0.91	30	62448	4	0	3	1	80
ASE_00084	RNaseP_bact_a links to Rfam database...	0.49	0.34	0.69	34	53579	15	0	15	0	65
ASE_00087	RNaseP_bact_a links to Rfam database...	0.41	0.21	0.79	30	88372	8	0	8	0	114
ASE_00090	RNaseP_bact_a links to Rfam database...	0.46	0.33	0.66	33	55561	18	0	17	1	68
ASE_00092	RNaseP_bact_a links to Rfam database...	0.55	0.37	0.81	42	63494	11	0	10	1	71
ASE_00099	RNaseP_bact_a links to Rfam database...	0.55	0.40	0.76	48	64557	17	0	15	2	72
ASE_00104	RNaseP_bact_a links to Rfam database...	0.47	0.30	0.73	36	64212	14	0	13	1	83
ASE_00105	RNaseP_bact_a links to Rfam database...	0.42	0.23	0.78	25	64229	7	1	6	0	86
ASE_00107	RNaseP_bact_a links to Rfam database...	0.62	0.45	0.85	57	73086	10	0	10	0	70
ASE_00114	RNaseP_bact_b links to Rfam database...	0.41	0.32	0.52	25	45403	25	1	22	2	52
ASE_00115	RNaseP_bact_a links to Rfam database...	0.51	0.29	0.91	29	54583	4	0	3	1	72
ASE_00118	RNaseP_bact_a links to Rfam database...	0.65	0.48	0.88	49	60670	9	1	6	2	53
ASE_00119	RNaseP_bact_a links to Rfam database...	0.44	0.29	0.67	31	62789	17	3	12	2	77
ASE_00123	RNaseP_bact_a links to Rfam database...	0.45	0.28	0.71	24	38469	14	0	10	4	61
ASE_00125	RNaseP_bact_a links to Rfam database...	0.55	0.40	0.76	35	39294	12	1	10	1	53
ASE_00126	RNaseP_bact_a links to Rfam database...	0.66	0.56	0.78	46	40411	14	0	13	1	36
ASE_00128	RNaseP_bact_a links to Rfam database...	0.51	0.29	0.91	29	53269	4	0	3	1	71
ASE_00129	RNaseP_bact_a links to Rfam database...	0.51	0.27	0.97	30	62804	1	0	1	0	81
ASE_00131	RNaseP_bact_a links to Rfam database...	0.53	0.34	0.83	29	39305	7	0	6	1	56
ASE_00134	RNaseP_bact_a links to Rfam database...	0.63	0.48	0.82	46	50347	11	0	10	1	49
ASE_00135	RNaseP_bact_a links to Rfam database...	0.47	0.34	0.65	37	63133	20	1	19	0	72
ASE_00136	RNaseP_bact_a links to Rfam database...	0.63	0.50	0.81	46	48148	13	0	11	2	46
ASE_00137	RNaseP_bact_a links to Rfam database...	0.67	0.50	0.89	49	48461	7	2	4	1	49
ASE_00138	RNaseP_bact_a links to Rfam database...	0.74	0.63	0.86	51	40411	9	1	7	1	30
ASE_00140	RNaseP_bact_a links to Rfam database...	0.35	0.18	0.69	22	70844	11	0	10	1	103
ASE_00142	RNaseP_bact_a links to Rfam database...	0.46	0.22	0.96	27	67133	3	0	1	2	95
ASE_00146	RNaseP_bact_a links to Rfam database...	0.52	0.38	0.70	47	70809	20	1	19	0	77
ASE_00153	RNaseP_nuc links to Rfam database...	0.09	0.05	0.16	4	57605	39	5	16	18	69
ASE_00161	RNaseP_bact_b links to Rfam database...	0.51	0.37	0.71	32	53583	14	1	12	1	55
ASE_00163	RNaseP_bact_a links to Rfam database...	0.67	0.54	0.83	50	53241	10	1	9	0	43
ASE_00165	RNaseP_bact_a links to Rfam database...	0.54	0.31	0.97	31	52943	1	0	1	0	70
ASE_00170	RNaseP_bact_a links to Rfam database...	0.52	0.32	0.83	30	48792	8	0	6	2	63
ASE_00171	RNaseP_bact_a links to Rfam database...	0.64	0.48	0.85	45	48463	9	1	7	1	49
ASE_00172	RNaseP_bact_a links to Rfam database...	0.53	0.38	0.74	40	58942	15	1	13	1	66
ASE_00174	RNaseP_bact_a links to Rfam database...	0.39	0.19	0.81	21	61049	5	2	3	0	88
ASE_00175	RNaseP_bact_a links to Rfam database...	0.46	0.32	0.65	34	59979	18	0	18	0	73
ASE_00179	RNaseP_bact_a links to Rfam database...	0.55	0.45	0.67	38	44196	19	3	16	0	46
ASE_00180	RNaseP_bact_a links to Rfam database...	0.69	0.57	0.84	57	51292	11	0	11	0	43
ASE_00181	RNaseP_bact_a links to Rfam database...	0.50	0.30	0.82	32	57591	8	0	7	1	74
ASE_00182	RNaseP_bact_a links to Rfam database...	0.40	0.26	0.64	35	84200	20	1	19	0	101
ASE_00183	RNaseP_bact_a links to Rfam database...	0.42	0.26	0.67	29	61382	14	0	14	0	84
ASE_00184	RNaseP_bact_a links to Rfam database...	0.63	0.47	0.86	48	54559	8	1	7	0	54
ASE_00185	RNaseP_bact_a links to Rfam database...	0.35	0.18	0.70	23	73503	10	0	10	0	105
ASE_00186	RNaseP_bact_a links to Rfam database...	0.44	0.27	0.71	36	78952	15	0	15	0	96
ASE_00190	RNaseP_bact_b links to Rfam database...	0.32	0.18	0.57	16	45423	13	1	11	1	74
ASE_00197	RNaseP_bact_a links to Rfam database...	0.45	0.26	0.78	38	89204	11	0	11	0	107
ASE_00198	RNaseP_bact_a links to Rfam database...	0.62	0.46	0.84	47	52594	9	1	8	0	55
ASE_00203	RNaseP_bact_a links to Rfam database...	0.44	0.24	0.79	23	46636	6	2	4	0	73
ASE_00212	RNaseP_bact_a links to Rfam database...	0.43	0.27	0.69	40	93903	18	1	17	0	108
ASE_00214	RNaseP_bact_a links to Rfam database...	0.62	0.47	0.81	48	56221	13	0	11	2	55
ASE_00215	RNaseP_bact_a links to Rfam database...	0.42	0.27	0.66	27	48475	15	0	14	1	72
ASE_00216	RNaseP_bact_a links to Rfam database...	0.72	0.60	0.86	49	39283	8	5	3	0	33
ASE_00217	RNaseP_bact_a links to Rfam database...	0.54	0.38	0.77	34	40426	12	0	10	2	56
ASE_00221	RNaseP_bact_a links to Rfam database...	0.56	0.38	0.80	45	64564	11	1	10	0	72
ASE_00228	RNaseP_bact_a links to Rfam database...	0.41	0.24	0.70	21	46941	10	2	7	1	65
ASE_00229	RNaseP_bact_a links to Rfam database...	0.57	0.44	0.75	38	42435	14	0	13	1	49
ASE_00231	RNaseP_bact_a links to Rfam database...	0.61	0.45	0.83	43	47843	9	2	7	0	53
ASE_00232	RNaseP_bact_a links to Rfam database...	0.66	0.56	0.78	47	38443	13	4	9	0	37
ASE_00234	RNaseP_bact_a links to Rfam database...	0.45	0.27	0.74	35	75419	12	1	11	0	94
ASE_00238	RNaseP_bact_a links to Rfam database...	0.46	0.22	0.96	25	64235	1	0	1	0	89
ASE_00241	RNaseP_bact_a links to Rfam database...	0.77	0.68	0.88	59	43889	8	0	8	0	28
ASE_00242	RNaseP_bact_a links to Rfam database...	0.58	0.41	0.81	46	61018	13	1	10	2	66
ASE_00248	RNaseP_bact_a links to Rfam database...	0.56	0.39	0.80	44	62426	11	1	10	0	70
ASE_00254	RNaseP_bact_a links to Rfam database...	0.65	0.55	0.76	45	36797	14	3	11	0	37
ASE_00255	RNaseP_bact_a links to Rfam database...	0.42	0.22	0.82	28	74657	6	1	5	0	102
ASE_00257	RNaseP_bact_a links to Rfam database...	0.51	0.36	0.73	35	50992	14	0	13	1	62
ASE_00263	RNaseP_bact_a links to Rfam database...	0.50	0.33	0.78	39	70450	12	0	11	1	81
ASE_00267	RNaseP_bact_a links to Rfam database...	0.62	0.47	0.82	41	45100	10	0	9	1	47
ASE_00270	RNaseP_bact_a links to Rfam database...	0.47	0.27	0.80	35	72346	9	0	9	0	93
ASE_00274	RNaseP_bact_a links to Rfam database...	0.56	0.42	0.75	43	55554	14	1	13	0	60
ASE_00277	RNaseP_bact_a links to Rfam database...	0.49	0.27	0.89	25	48177	3	0	3	0	66
ASE_00279	RNaseP_bact_a links to Rfam database...	0.50	0.27	0.93	27	53272	2	0	2	0	74
ASE_00280	RNaseP_bact_a links to Rfam database...	0.45	0.30	0.67	29	51960	15	0	14	1	69
ASE_00281	RNaseP_bact_a links to Rfam database...	0.49	0.30	0.81	26	44519	6	0	6	0	62
ASE_00282	RNaseP_bact_a links to Rfam database...	0.45	0.30	0.68	38	77759	18	1	17	0	89
ASE_00283	RNaseP_bact_a links to Rfam database...	0.46	0.26	0.82	28	61742	8	0	6	2	79
ASE_00284	RNaseP_bact_a links to Rfam database...	0.41	0.24	0.70	26	58274	11	0	11	0	82
ASE_00285	RNaseP_bact_a links to Rfam database...	0.43	0.22	0.82	27	68973	6	0	6	0	95
ASE_00286	RNaseP_bact_a links to Rfam database...	0.66	0.51	0.85	47	46610	9	0	8	1	45
ASE_00287	RNaseP_bact_a links to Rfam database...	0.44	0.31	0.63	32	54895	20	1	18	1	71
ASE_00292	RNaseP_bact_a links to Rfam database...	0.50	0.35	0.72	48	81743	19	0	19	0	90
ASE_00294	RNaseP_bact_a links to Rfam database...	0.37	0.19	0.74	32	114438	12	0	11	1	139
ASE_00296	RNaseP_bact_a links to Rfam database...	0.35	0.18	0.67	26	91767	13	0	13	0	119
ASE_00297	RNaseP_bact_a links to Rfam database...	0.40	0.24	0.65	24	52938	14	0	13	1	74
ASE_00298	RNaseP_bact_a links to Rfam database...	0.54	0.38	0.75	43	67471	14	1	13	0	70
ASE_00305	RNaseP_bact_b links to Rfam database...	0.52	0.39	0.70	33	54568	15	1	13	1	52
ASE_00318	RNaseP_bact_b links to Rfam database...	0.49	0.31	0.80	36	80155	10	3	6	1	82
ASE_00321	RNaseP_bact_b links to Rfam database...	0.54	0.41	0.72	36	54565	15	1	13	1	52
ASE_00328	RNaseP_bact_b links to Rfam database...	0.48	0.34	0.69	38	72716	20	4	13	3	74
ASE_00332	RNaseP_bact_a links to Rfam database...	0.41	0.20	0.87	27	81779	4	0	4	0	111
ASE_00335	RNaseP_bact_b links to Rfam database...	0.46	0.32	0.67	37	75411	19	2	16	1	79
ASE_00340	RNaseP_bact_a links to Rfam database...	0.47	0.36	0.62	31	46006	19	5	14	0	54
ASE_00342	RNaseP_bact_a links to Rfam database...	0.57	0.41	0.81	47	62423	13	0	11	2	68
ASE_00353	RNaseP_bact_a links to Rfam database...	0.52	0.39	0.68	42	57908	21	1	19	1	65
ASE_00361	RNaseP_bact_a links to Rfam database...	0.40	0.21	0.75	27	75430	10	1	8	1	100
ASE_00362	RNaseP_bact_a links to Rfam database...	0.52	0.41	0.66	37	48149	19	0	19	0	54
ASE_00363	RNaseP_bact_a links to Rfam database...	0.48	0.30	0.78	28	51324	9	4	4	1	66
ASE_00364	RNaseP_bact_a links to Rfam database...	0.43	0.25	0.76	26	54251	8	0	8	0	79
ASE_00366	RNaseP_bact_a links to Rfam database...	0.43	0.33	0.56	32	58596	25	3	22	0	66
ASE_00367	RNaseP_bact_a links to Rfam database...	0.50	0.30	0.84	26	43040	5	0	5	0	60
ASE_00369	RNaseP_bact_a links to Rfam database...	0.55	0.38	0.79	41	55893	11	0	11	0	66
ASE_00370	RNaseP_bact_a links to Rfam database...	0.69	0.57	0.83	48	41847	11	1	9	1	36
ASE_00372	RNaseP_bact_a links to Rfam database...	0.60	0.43	0.84	43	51952	8	0	8	0	57
ASE_00374	RNaseP_bact_a links to Rfam database...	0.52	0.32	0.85	28	44817	6	0	5	1	60
ASE_00376	RNaseP_bact_a links to Rfam database...	0.42	0.25	0.70	26	56916	11	0	11	0	79
ASE_00377	RNaseP_bact_a links to Rfam database...	0.43	0.25	0.75	27	57594	10	0	9	1	80
ASE_00379	RNaseP_bact_a links to Rfam database...	0.60	0.44	0.83	39	46009	9	0	8	1	50
ASE_00382	RNaseP_bact_a links to Rfam database...	0.64	0.51	0.81	43	41852	11	1	9	1	41
ASE_00383	RNaseP_bact_a links to Rfam database...	0.55	0.38	0.78	40	54564	11	1	10	0	65
ASE_00384	RNaseP_bact_a links to Rfam database...	0.49	0.28	0.87	26	48486	5	0	4	1	66
ASE_00386	RNaseP_bact_a links to Rfam database...	0.54	0.31	0.94	30	50371	3	0	2	1	66
ASE_00387	RNaseP_bact_a links to Rfam database...	0.42	0.23	0.75	24	55913	9	0	8	1	80
ASE_00388	RNaseP_bact_a links to Rfam database...	0.68	0.55	0.84	49	45695	10	1	8	1	40
ASE_00390	RNaseP_bact_a links to Rfam database...	0.55	0.33	0.93	28	42165	3	0	2	1	57
ASE_00393	RNaseP_bact_a links to Rfam database...	0.58	0.45	0.74	42	47838	15	1	14	0	51
ASE_00394	RNaseP_bact_a links to Rfam database...	0.54	0.31	0.94	29	46940	3	0	2	1	64
ASE_00395	RNaseP_bact_a links to Rfam database...	0.61	0.48	0.78	40	41565	11	0	11	0	44
ASE_00396	RNaseP_bact_a links to Rfam database...	0.56	0.34	0.93	28	41586	3	0	2	1	55
ASE_00397	RNaseP_bact_a links to Rfam database...	0.55	0.38	0.78	40	54564	12	0	11	1	65
ASE_00398	RNaseP_bact_a links to Rfam database...	0.44	0.23	0.86	24	55917	5	0	4	1	80
ASE_00400	RNaseP_bact_a links to Rfam database...	0.58	0.43	0.78	46	57911	13	1	12	0	60
ASE_00401	RNaseP_bact_a links to Rfam database...	0.43	0.21	0.90	26	76999	4	0	3	1	100
ASE_00402	RNaseP_bact_a links to Rfam database...	0.54	0.36	0.79	31	42447	8	0	8	0	54
ASE_00403	RNaseP_bact_a links to Rfam database...	0.61	0.42	0.88	45	55894	6	1	5	0	62
ASE_00404	RNaseP_bact_a links to Rfam database...	0.68	0.56	0.83	48	43013	10	1	9	0	37
ASE_00406	RNaseP_bact_a links to Rfam database...	0.59	0.41	0.85	39	48782	9	0	7	2	55
ASE_00411	RNaseP_bact_a links to Rfam database...	0.44	0.33	0.59	29	49406	20	1	19	0	60
ASE_00412	RNaseP_bact_a links to Rfam database...	0.53	0.36	0.79	38	58263	11	0	10	1	67
ASE_00413	RNaseP_bact_a links to Rfam database...	0.51	0.37	0.70	30	44508	14	3	10	1	51
ASE_00415	RNaseP_bact_a links to Rfam database...	0.39	0.20	0.75	21	54918	8	0	7	1	82
ASE_00416	RNaseP_bact_a links to Rfam database...	0.42	0.21	0.82	27	77388	7	0	6	1	100
ASE_00419	RNaseP_bact_a links to Rfam database...	0.55	0.41	0.75	42	54890	14	2	12	0	61
ASE_00422	RNaseP_bact_a links to Rfam database...	0.57	0.40	0.79	38	46923	11	0	10	1	56
ASE_00423	RNaseP_bact_a links to Rfam database...	0.39	0.24	0.63	26	56912	15	0	15	0	83
ASE_00427	RNaseP_nuc links to Rfam database...	0.37	0.30	0.45	14	40724	41	4	13	24	32
ASE_00428	RNaseP_bact_a links to Rfam database...	0.56	0.40	0.79	50	76573	13	1	12	0	75
ASE_00430	RNaseP_bact_a links to Rfam database...	0.46	0.25	0.86	24	46943	4	0	4	0	73
ASE_00437	RNaseP_bact_a links to Rfam database...	0.58	0.39	0.87	53	79340	8	0	8	0	82
ASE_00441	RNaseP_bact_a links to Rfam database...	0.53	0.36	0.80	40	64211	11	1	9	1	72
ASE_00448	RNaseP_bact_a links to Rfam database...	0.51	0.33	0.79	37	64214	11	0	10	1	75
ASE_00451	RNaseP_bact_a links to Rfam database...	0.54	0.35	0.83	44	70823	10	1	8	1	81
CRW_00548	5S_rRNA links to Rfam database...	0.73	0.63	0.86	24	7353	4	1	3	0	14
CRW_00552	5S_rRNA links to Rfam database...	0.66	0.44	1.00	17	7123	0	0	0	0	22
CRW_00555	5S_rRNA links to Rfam database...	0.68	0.53	0.88	21	7602	3	0	3	0	19
CRW_00567	5S_rRNA links to Rfam database...	0.79	0.63	1.00	25	7478	1	0	0	1	15
CRW_00570	5S_rRNA links to Rfam database...	0.73	0.62	0.85	23	6876	4	0	4	0	14
CRW_00573	5S_rRNA links to Rfam database...	0.74	0.55	1.00	22	7118	0	0	0	0	18
CRW_01484	5S_rRNA links to Rfam database...	0.69	0.56	0.85	22	7477	5	0	4	1	17
CRW_01485	5S_rRNA links to Rfam database...	0.70	0.54	0.91	21	7480	3	0	2	1	18
CRW_01487	5S_rRNA links to Rfam database...	0.48	0.34	0.67	14	7482	7	2	5	0	27
CRW_01489	5S_rRNA links to Rfam database...	0.60	0.49	0.73	19	7477	7	1	6	0	20
CRW_01491	5S_rRNA links to Rfam database...	0.64	0.49	0.84	21	8360	5	0	4	1	22
CRW_01492	5S_rRNA links to Rfam database...	0.70	0.60	0.83	25	7596	5	0	5	0	17
CRW_01494	5S_rRNA links to Rfam database...	0.54	0.38	0.79	15	7121	6	0	4	2	25
CRW_01497	5S_rRNA links to Rfam database...	0.57	0.38	0.88	15	7123	2	0	2	0	25
CRW_01498	5S_rRNA links to Rfam database...	0.66	0.53	0.82	23	8100	6	0	5	1	20
CRW_01499	5S_rRNA links to Rfam database...	0.64	0.51	0.81	21	7975	5	0	5	0	20
CRW_01500	5S_rRNA links to Rfam database...	0.32	0.26	0.40	10	7725	16	2	13	1	28
CRW_01501	5S_rRNA links to Rfam database...	0.59	0.44	0.80	20	8490	5	0	5	0	25
CRW_01508	5S_rRNA links to Rfam database...	0.33	0.21	0.50	9	7983	11	2	7	2	33
CRW_01532	5S_rRNA links to Rfam database...	0.71	0.59	0.85	22	7114	8	0	4	4	15
CRW_01533	5S_rRNA links to Rfam database...	0.66	0.49	0.90	18	7120	2	0	2	0	19
CRW_01534	5S_rRNA links to Rfam database...	0.81	0.73	0.90	27	7110	6	0	3	3	10
CRW_01535	5S_rRNA links to Rfam database...	0.68	0.51	0.90	19	7119	2	0	2	0	18
CRW_01536	5S_rRNA links to Rfam database...	0.85	0.73	1.00	27	6994	1	0	0	1	10
CRW_01537	5S_rRNA links to Rfam database...	0.68	0.51	0.90	19	7119	5	0	2	3	18
CRW_01539	5S_rRNA links to Rfam database...	0.72	0.65	0.80	24	7110	12	0	6	6	13
CRW_01540	5S_rRNA links to Rfam database...	0.68	0.49	0.95	18	7121	4	0	1	3	19
CRW_01541	5S_rRNA links to Rfam database...	0.62	0.43	0.89	16	7122	4	0	2	2	21
CRW_01542	5S_rRNA links to Rfam database...	0.68	0.51	0.90	19	7119	4	0	2	2	18
CRW_01544	5S_rRNA links to Rfam database...	0.59	0.46	0.77	17	7118	5	0	5	0	20
CRW_01548	5S_rRNA links to Rfam database...	0.73	0.62	0.85	23	6994	6	0	4	2	14
CRW_01555	5S_rRNA links to Rfam database...	0.82	0.70	0.96	26	9018	5	0	1	4	11
CRW_01556	5S_rRNA links to Rfam database...	0.62	0.43	0.89	16	7122	2	0	2	0	21
CRW_01557	5S_rRNA links to Rfam database...	0.80	0.65	1.00	24	7116	1	0	0	1	13
CRW_01559	5S_rRNA links to Rfam database...	0.76	0.68	0.86	25	7231	7	0	4	3	12
CRW_01562	5S_rRNA links to Rfam database...	0.82	0.73	0.93	27	7111	3	0	2	1	10
CRW_01563	5S_rRNA links to Rfam database...	0.68	0.51	0.90	19	6882	3	0	2	1	18
CRW_01566	5S_rRNA links to Rfam database...	0.59	0.35	1.00	13	7127	0	0	0	0	24
CRW_01568	5S_rRNA links to Rfam database...	0.62	0.46	0.85	17	7120	5	0	3	2	20
CRW_01569	5S_rRNA links to Rfam database...	0.66	0.49	0.90	18	7120	2	0	2	0	19
CRW_01570	5S_rRNA links to Rfam database...	0.74	0.59	0.92	22	7116	6	0	2	4	15
CRW_01572	5S_rRNA links to Rfam database...	0.70	0.57	0.88	21	6997	7	0	3	4	16
CRW_01573	5S_rRNA links to Rfam database...	0.82	0.73	0.93	27	7231	4	0	2	2	10
CRW_01578	5S_rRNA links to Rfam database...	0.81	0.70	0.93	26	7112	6	0	2	4	11
CRW_01580	5S_rRNA links to Rfam database...	0.76	0.62	0.92	23	7115	4	0	2	2	14
CRW_01581	5S_rRNA links to Rfam database...	0.74	0.59	0.92	22	7116	3	0	2	1	15
CRW_01583	5S_rRNA links to Rfam database...	0.81	0.70	0.93	26	7112	3	0	2	1	11
CRW_01584	5S_rRNA links to Rfam database...	0.66	0.51	0.86	19	7118	4	0	3	1	18
CRW_01590	5S_rRNA links to Rfam database...	0.76	0.62	0.92	23	7115	3	0	2	1	14
CRW_01593	5S_rRNA links to Rfam database...	0.68	0.51	0.90	19	7119	4	0	2	2	18
CRW_01595	5S_rRNA links to Rfam database...	0.68	0.62	0.74	23	8484	11	0	8	3	14
CRW_01599	5S_rRNA links to Rfam database...	0.79	0.62	1.00	23	7117	1	0	0	1	14
CRW_01603	5S_rRNA links to Rfam database...	0.62	0.43	0.89	16	7122	2	0	2	0	21
CRW_01605	5S_rRNA links to Rfam database...	0.64	0.46	0.89	17	7121	4	0	2	2	20
CRW_01606	5S_rRNA links to Rfam database...	0.66	0.49	0.90	18	7120	5	0	2	3	19
CRW_01608	5S_rRNA links to Rfam database...	0.73	0.62	0.85	23	8358	5	0	4	1	14
CRW_01616	5S_rRNA links to Rfam database...	0.79	0.68	0.93	25	7113	6	0	2	4	12
CRW_01617	5S_rRNA links to Rfam database...	0.74	0.62	0.88	23	7114	6	0	3	3	14
CRW_01620	5S_rRNA links to Rfam database...	0.83	0.76	0.90	28	6990	5	0	3	2	9
CRW_01621	5S_rRNA links to Rfam database...	0.60	0.43	0.84	16	7121	3	0	3	0	21
CRW_01623	5S_rRNA links to Rfam database...	0.70	0.57	0.88	21	7116	4	0	3	1	16
CRW_01625	5S_rRNA links to Rfam database...	0.76	0.62	0.92	23	7115	2	0	2	0	14
PDB_00012	mir-TAR links to Rfam database...	1.00	1.00	1.00	7	399	2	0	0	2	0
PDB_00070	tRNA links to Rfam database...	0.76	0.58	1.00	14	2836	0	0	0	0	10
PDB_00213	Gammaretro_CES links to Rfam database...	0.85	0.73	1.00	30	5020	0	0	0	0	11
PDB_00229	tRNA links to Rfam database...	0.88	0.78	1.00	18	2757	0	0	0	0	5
PDB_00327	tRNA links to Rfam database...	0.93	0.87	1.00	20	3061	0	0	0	0	3
PDB_00362	tRNA links to Rfam database...	0.95	0.91	1.00	20	2830	0	0	0	0	2
PDB_00402	tRNA links to Rfam database...	0.93	0.87	1.00	20	2755	0	0	0	0	3
PDB_00431	tRNA links to Rfam database...	0.95	0.90	1.00	18	2193	0	0	0	0	2
PDB_00474	tRNA links to Rfam database...	0.88	0.78	1.00	18	2683	0	0	0	0	5
PDB_00553	mir-TAR links to Rfam database...	0.90	0.82	1.00	9	456	0	0	0	0	2
PDB_00571	tRNA links to Rfam database...	0.87	0.80	0.95	20	3300	1	0	1	0	5
PDB_00667	tRNA links to Rfam database...	0.71	0.59	0.87	13	2835	3	0	2	1	9
PDB_00741	Entero_5_CRE links to Rfam database...	0.84	0.71	1.00	12	691	0	0	0	0	5
PDB_00810	s2m links to Rfam database...	0.76	0.59	1.00	10	1071	0	0	0	0	7
PDB_00828	Purine links to Rfam database...	0.84	0.70	1.00	19	2466	0	0	0	0	8
PDB_00829	Purine links to Rfam database...	0.84	0.71	1.00	17	2261	0	0	0	0	7
PDB_00876	HIV_FE links to Rfam database...	0.84	0.75	0.94	15	974	1	0	1	0	5
PDB_01002	tRNA links to Rfam database...	0.75	0.57	1.00	12	2763	2	0	0	2	9
PDB_01020	Purine links to Rfam database...	0.78	0.61	1.00	14	2264	0	0	0	0	9
PDB_01050	UnaL2 links to Rfam database...	0.78	0.62	1.00	8	622	1	0	0	1	5
PDB_01053	tRNA links to Rfam database...	0.90	0.81	1.00	13	1365	0	0	0	0	3
PDB_01073	SAM links to Rfam database...	0.59	0.35	1.00	12	4359	1	0	0	1	22
PDB_01114	TPP links to Rfam database...	0.51	0.37	0.71	10	2836	4	0	4	0	17
PDB_01152	HIV_FS2 links to Rfam database...	0.92	0.86	1.00	12	549	0	0	0	0	2
PDB_01236	ykoK links to Rfam database...	0.54	0.41	0.71	22	11597	10	0	9	1	32
RFA_00389	Hammerhead_3 links to Rfam database...	0.93	0.87	1.00	13	1418	1	0	0	1	2
RFA_00390	Hammerhead_3 links to Rfam database...	0.93	0.87	1.00	13	1418	1	0	0	1	2
RFA_00391	Hammerhead_3 links to Rfam database...	0.89	0.80	1.00	12	1419	1	0	0	1	3
RFA_00396	Hammerhead_3 links to Rfam database...	0.93	0.87	1.00	13	1418	1	0	0	1	2
RFA_00402	Hammerhead_3 links to Rfam database...	0.93	0.87	1.00	13	1418	0	0	0	0	2
RFA_00409	Hammerhead_3 links to Rfam database...	0.89	0.80	1.00	12	1419	1	0	0	1	3
RFA_00416	Hammerhead_3 links to Rfam database...	0.93	0.87	1.00	13	1472	1	0	0	1	2
RFA_00433	Hammerhead_3 links to Rfam database...	0.93	0.87	1.00	13	1418	1	0	0	1	2
RFA_00434	Hammerhead_3 links to Rfam database...	0.93	0.87	1.00	13	1418	1	0	0	1	2
RFA_00436	Hammerhead_3 links to Rfam database...	0.93	0.87	1.00	13	1418	1	0	0	1	2
RFA_00440	Hammerhead_3 links to Rfam database...	0.93	0.87	1.00	13	1472	1	0	0	1	2
RFA_00442	Hammerhead_3 links to Rfam database...	0.93	0.87	1.00	13	1418	1	0	0	1	2
RFA_00444	Hammerhead_3 links to Rfam database...	0.82	0.67	1.00	10	1530	0	0	0	0	5
RFA_00583	Y_RNA links to Rfam database...	0.48	0.47	0.50	7	4936	18	0	7	11	8
RFA_00584	Y_RNA links to Rfam database...	0.97	0.93	1.00	14	2912	9	0	0	9	1
RFA_00585	Y_RNA links to Rfam database...	0.97	0.93	1.00	14	4837	11	0	0	11	1
RFA_00586	Y_RNA links to Rfam database...	0.63	0.40	1.00	6	3910	7	0	0	7	9
RFA_00587	Y_RNA links to Rfam database...	0.97	0.93	1.00	14	4837	10	0	0	10	1
RFA_00588	Y_RNA links to Rfam database...	0.00	0.00	0.00	0	4555	10	0	5	5	15
RFA_00589	Y_RNA links to Rfam database...	0.97	0.93	1.00	14	4357	11	0	0	11	1
RFA_00594	Y_RNA links to Rfam database...	0.93	0.87	1.00	13	2762	8	0	0	8	2
RFA_00596	Y_RNA links to Rfam database...	0.86	0.73	1.00	11	5984	16	0	0	16	4
RFA_00599	Telomerase-vert links to Rfam database...	0.06	0.04	0.10	4	101435	37	2	34	1	107
RFA_00601	Telomerase-vert links to Rfam database...	0.20	0.13	0.32	15	99188	37	2	30	5	99
RFA_00602	Telomerase-vert links to Rfam database...	0.15	0.09	0.26	10	101437	34	0	28	6	106
RFA_00658	Hammerhead_1 links to Rfam database...	0.40	0.29	0.57	4	1121	4	0	3	1	10
RFA_00664	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	985	5	0	5	0	14
RFA_00667	Hammerhead_1 links to Rfam database...	0.40	0.29	0.57	4	983	4	0	3	1	10
RFA_00668	Hammerhead_1 links to Rfam database...	0.35	0.21	0.60	3	985	3	0	2	1	11
RFA_00672	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	898	5	0	5	0	13
RFA_00673	Hammerhead_1 links to Rfam database...	0.23	0.14	0.40	2	1123	4	0	3	1	12
RFA_00674	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	1123	5	0	5	0	14
RFA_00675	Hammerhead_1 links to Rfam database...	0.35	0.21	0.60	3	985	3	0	2	1	11
RFA_00677	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	985	5	0	5	0	14
RFA_00678	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	942	4	0	4	0	14
RFA_00680	Hammerhead_1 links to Rfam database...	0.40	0.29	0.57	4	1121	4	0	3	1	10
RFA_00704	Hammerhead_1 links to Rfam database...	0.32	0.21	0.50	3	984	4	0	3	1	11
RFA_00707	Hammerhead_1 links to Rfam database...	0.43	0.29	0.67	4	1029	3	0	2	1	10
RFA_00715	Hammerhead_1 links to Rfam database...	0.30	0.14	0.67	2	943	2	0	1	1	12
RFA_00717	Hammerhead_1 links to Rfam database...	0.46	0.21	1.00	3	900	0	0	0	0	11
RFA_00730	s2m links to Rfam database...	0.91	0.83	1.00	10	893	0	0	0	0	2
RFA_00731	s2m links to Rfam database...	0.91	0.83	1.00	10	893	0	0	0	0	2
RFA_00733	s2m links to Rfam database...	0.81	0.67	1.00	8	895	0	0	0	0	4
RFA_00734	s2m links to Rfam database...	0.81	0.67	1.00	8	895	0	0	0	0	4
RFA_00736	s2m links to Rfam database...	0.91	0.83	1.00	10	893	0	0	0	0	2
RFA_00737	s2m links to Rfam database...	0.81	0.67	1.00	8	895	0	0	0	0	4
RFA_00745	s2m links to Rfam database...	0.91	0.83	1.00	10	936	0	0	0	0	2
RFA_00749	s2m links to Rfam database...	0.91	0.83	1.00	10	893	0	0	0	0	2
RFA_00758	s2m links to Rfam database...	0.86	0.75	1.00	9	894	0	0	0	0	3
RFA_00762	s2m links to Rfam database...	0.91	0.83	1.00	10	893	0	0	0	0	2
RFA_00763	s2m links to Rfam database...	0.91	0.83	1.00	10	893	0	0	0	0	2
RFA_00764	s2m links to Rfam database...	0.81	0.67	1.00	8	895	0	0	0	0	4
RFA_00765	s2m links to Rfam database...	0.91	0.83	1.00	10	893	0	0	0	0	2
RFA_00786	Gammaretro_CES links to Rfam database...	0.95	0.91	1.00	29	5021	0	0	0	0	3
RFA_00791	Gammaretro_CES links to Rfam database...	0.92	0.88	0.97	28	5122	1	0	1	0	4
RFA_00792	Gammaretro_CES links to Rfam database...	0.97	0.94	1.00	30	5020	0	0	0	0	2
RFA_00801	Gammaretro_CES links to Rfam database...	0.95	0.91	1.00	29	5021	0	0	0	0	3
SPR_00007	tRNA links to Rfam database...	0.74	0.67	0.82	14	2833	3	0	3	0	7
SPR_00009	tRNA links to Rfam database...	0.76	0.70	0.82	14	2833	3	0	3	0	6
SPR_00010	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00012	tRNA links to Rfam database...	0.76	0.70	0.82	14	2833	3	0	3	0	6
SPR_00013	tRNA links to Rfam database...	0.97	0.95	1.00	19	2831	0	0	0	0	1
SPR_00016	tRNA links to Rfam database...	0.79	0.67	0.93	14	2835	1	0	1	0	7
SPR_00017	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00025	tRNA links to Rfam database...	0.58	0.45	0.75	9	2914	3	0	3	0	11
SPR_00026	tRNA links to Rfam database...	0.98	0.95	1.00	20	2906	0	0	0	0	1
SPR_00027	tRNA links to Rfam database...	0.93	0.86	1.00	18	2908	0	0	0	0	3
SPR_00036	tRNA links to Rfam database...	0.87	0.75	1.00	15	2760	0	0	0	0	5
SPR_00045	tRNA links to Rfam database...	0.75	0.68	0.83	15	2832	3	0	3	0	7
SPR_00064	tRNA links to Rfam database...	0.82	0.67	1.00	14	2836	0	0	0	0	7
SPR_00065	tRNA links to Rfam database...	0.65	0.43	1.00	9	2841	0	0	0	0	12
SPR_00066	tRNA links to Rfam database...	0.95	0.90	1.00	19	2831	0	0	0	0	2
SPR_00068	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00070	tRNA links to Rfam database...	0.76	0.67	0.88	14	2834	2	0	2	0	7
SPR_00074	tRNA links to Rfam database...	0.97	0.95	1.00	19	2831	0	0	0	0	1
SPR_00079	tRNA links to Rfam database...	0.83	0.68	1.00	13	2472	0	0	0	0	6
SPR_00086	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00087	tRNA links to Rfam database...	0.95	0.90	1.00	18	2832	0	0	0	0	2
SPR_00088	tRNA links to Rfam database...	0.97	0.95	1.00	19	2831	0	0	0	0	1
SPR_00089	tRNA links to Rfam database...	0.84	0.70	1.00	14	2836	0	0	0	0	6
SPR_00090	tRNA links to Rfam database...	0.97	0.95	1.00	19	2831	0	0	0	0	1
SPR_00091	tRNA links to Rfam database...	0.92	0.85	1.00	17	2833	0	0	0	0	3
SPR_00095	tRNA links to Rfam database...	0.95	0.90	1.00	19	2831	0	0	0	0	2
SPR_00111	tRNA links to Rfam database...	0.95	0.90	1.00	19	2682	0	0	0	0	2
SPR_00112	tRNA links to Rfam database...	0.95	0.90	1.00	19	2682	1	0	0	1	2
SPR_00115	tRNA links to Rfam database...	0.98	0.95	1.00	20	2681	0	0	0	0	1
SPR_00117	tRNA links to Rfam database...	0.95	0.90	1.00	19	2831	1	0	0	1	2
SPR_00139	tRNA links to Rfam database...	0.98	0.95	1.00	20	2906	0	0	0	0	1
SPR_00153	tRNA links to Rfam database...	0.80	0.76	0.84	16	2907	3	0	3	0	5
SPR_00155	tRNA links to Rfam database...	0.79	0.71	0.88	15	2909	2	0	2	0	6
SPR_00156	tRNA links to Rfam database...	0.98	0.95	1.00	20	2906	0	0	0	0	1
SPR_00176	tRNA links to Rfam database...	0.97	0.95	1.00	19	2831	0	0	0	0	1
SPR_00177	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00178	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00191	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00200	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00224	tRNA links to Rfam database...	0.92	0.85	1.00	17	3724	4	0	0	4	3
SPR_00271	tRNA links to Rfam database...	0.93	0.86	1.00	18	2832	0	0	0	0	3
SPR_00273	tRNA links to Rfam database...	0.74	0.67	0.82	14	2833	3	0	3	0	7
SPR_00276	tRNA links to Rfam database...	0.98	0.95	1.00	20	2906	0	0	0	0	1
SPR_00277	tRNA links to Rfam database...	0.98	0.95	1.00	20	2906	0	0	0	0	1
SPR_00294	tRNA links to Rfam database...	0.95	0.90	1.00	19	2831	0	0	0	0	2
SPR_00295	tRNA links to Rfam database...	0.95	0.90	1.00	19	2756	0	0	0	0	2
SPR_00314	tRNA links to Rfam database...	0.98	0.95	1.00	20	2906	0	0	0	0	1
SPR_00315	tRNA links to Rfam database...	0.98	0.95	1.00	20	2906	0	0	0	0	1
SPR_00317	tRNA links to Rfam database...	0.90	0.85	0.94	17	2908	1	0	1	0	3
SPR_00318	tRNA links to Rfam database...	0.98	0.95	1.00	20	2906	1	0	0	1	1
SPR_00321	tRNA links to Rfam database...	0.90	0.86	0.95	18	2984	1	0	1	0	3
SPR_00333	tRNA links to Rfam database...	0.58	0.52	0.65	11	2758	6	0	6	0	10
SPR_00352	tRNA links to Rfam database...	0.95	0.90	1.00	19	2907	0	0	0	0	2
SPR_00353	tRNA links to Rfam database...	0.82	0.67	1.00	14	2836	0	0	0	0	7
SPR_00357	tRNA links to Rfam database...	0.95	0.90	1.00	19	2907	0	0	0	0	2
SPR_00358	tRNA links to Rfam database...	0.95	0.90	1.00	18	2908	0	0	0	0	2
SPR_00370	tRNA links to Rfam database...	0.82	0.67	1.00	14	2761	0	0	0	0	7
SPR_00386	tRNA links to Rfam database...	0.67	0.45	1.00	9	4177	4	0	0	4	11
SPR_00414	tRNA links to Rfam database...	0.82	0.67	1.00	14	3556	4	0	0	4	7
SPR_00415	tRNA links to Rfam database...	0.64	0.52	0.79	11	3556	7	0	3	4	10
SPR_00417	tRNA links to Rfam database...	0.60	0.50	0.73	11	3555	8	2	2	4	11
SPR_00418	tRNA links to Rfam database...	0.80	0.64	1.00	14	3556	4	0	0	4	8
SPR_00434	tRNA links to Rfam database...	0.90	0.81	1.00	17	2833	0	0	0	0	4
SPR_00435	tRNA links to Rfam database...	0.74	0.67	0.82	14	2833	3	0	3	0	7
SPR_00436	tRNA links to Rfam database...	0.93	0.86	1.00	18	2832	1	0	0	1	3
SPR_00437	tRNA links to Rfam database...	0.73	0.62	0.87	13	2760	3	0	2	1	8
SPR_00438	tRNA links to Rfam database...	0.82	0.67	1.00	14	2761	0	0	0	0	7
SPR_00452	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00455	tRNA links to Rfam database...	0.74	0.67	0.82	14	2833	3	0	3	0	7
SPR_00456	tRNA links to Rfam database...	0.93	0.86	1.00	18	2832	0	0	0	0	3
SPR_00476	tRNA links to Rfam database...	0.56	0.43	0.75	9	2763	3	1	2	0	12
SPR_00479	tRNA links to Rfam database...	0.93	0.86	1.00	18	2832	0	0	0	0	3
SPR_00482	tRNA links to Rfam database...	0.95	0.90	1.00	19	2682	0	0	0	0	2
SPR_00483	tRNA links to Rfam database...	0.95	0.90	1.00	19	2831	0	0	0	0	2
SPR_00487	tRNA links to Rfam database...	0.64	0.41	1.00	9	2692	0	0	0	0	13
SPR_00493	tRNA links to Rfam database...	0.77	0.59	1.00	13	2762	0	0	0	0	9
SPR_00496	tRNA links to Rfam database...	0.82	0.67	1.00	14	2761	0	0	0	0	7
SPR_00497	tRNA links to Rfam database...	0.82	0.67	1.00	14	2761	0	0	0	0	7
SPR_00502	tRNA links to Rfam database...	0.93	0.86	1.00	18	2908	0	0	0	0	3
SPR_00504	tRNA links to Rfam database...	0.95	0.90	1.00	18	2832	0	0	0	0	2
SPR_00505	tRNA links to Rfam database...	0.92	0.85	1.00	17	2909	0	0	0	0	3
SPR_00506	tRNA links to Rfam database...	0.97	0.95	1.00	19	2907	0	0	0	0	1
SPR_00509	tRNA links to Rfam database...	0.92	0.85	1.00	17	2909	0	0	0	0	3
SPR_00512	tRNA links to Rfam database...	0.78	0.70	0.88	14	2910	2	0	2	0	6
SPR_00513	tRNA links to Rfam database...	0.95	0.90	1.00	18	2908	0	0	0	0	2
SPR_00518	tRNA links to Rfam database...	0.92	0.85	1.00	17	2909	0	0	0	0	3
SPR_00548	tRNA links to Rfam database...	0.82	0.67	1.00	14	3389	0	0	0	0	7
SPR_00557	tRNA links to Rfam database...	0.95	0.90	1.00	19	2831	0	0	0	0	2
SPR_00561	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00590	tRNA links to Rfam database...	0.60	0.50	0.71	10	2989	5	0	4	1	10
SPR_00593	tRNA links to Rfam database...	0.56	0.32	1.00	6	2769	0	0	0	0	13
SPR_00595	tRNA links to Rfam database...	0.98	0.95	1.00	20	2755	0	0	0	0	1
SPR_00598	tRNA links to Rfam database...	0.79	0.62	1.00	13	2990	1	0	0	1	8
SPR_00610	tRNA links to Rfam database...	0.87	0.76	1.00	16	2540	0	0	0	0	5
SPR_00620	tRNA links to Rfam database...	0.69	0.48	1.00	10	2993	1	0	0	1	11
SPR_00721	tRNA links to Rfam database...	0.90	0.81	1.00	17	2909	0	0	0	0	4
SPR_00722	tRNA links to Rfam database...	0.95	0.90	1.00	18	2908	0	0	0	0	2
SPR_00758	tRNA links to Rfam database...	0.95	0.90	1.00	19	2984	0	0	0	0	2
SPR_00760	tRNA links to Rfam database...	0.98	0.95	1.00	20	3550	0	0	0	0	1
SPR_00777	tRNA links to Rfam database...	0.95	0.90	1.00	18	2610	1	0	0	1	2
SPR_00867	tRNA links to Rfam database...	0.98	0.95	1.00	20	2906	0	0	0	0	1
SPR_00868	tRNA links to Rfam database...	0.95	0.90	1.00	19	2907	0	0	0	0	2
SPR_00943	tRNA links to Rfam database...	0.60	0.50	0.71	10	2542	4	0	4	0	10
SPR_00957	tRNA links to Rfam database...	0.98	0.95	1.00	20	2983	0	0	0	0	1
SPR_01040	tRNA links to Rfam database...	0.93	0.86	1.00	18	2757	0	0	0	0	3
SPR_01088	tRNA links to Rfam database...	0.93	0.86	1.00	18	2908	0	0	0	0	3
SPR_01095	tRNA links to Rfam database...	0.95	0.90	1.00	19	2831	0	0	0	0	2
SPR_01106	tRNA links to Rfam database...	0.82	0.67	1.00	14	2542	0	0	0	0	7
SPR_01117	tRNA links to Rfam database...	0.90	0.81	1.00	17	2986	0	0	0	0	4
SPR_01157	tRNA links to Rfam database...	0.80	0.76	0.84	16	2756	4	0	3	1	5
SRP_00006	Metazoa_SRP links to Rfam database...	0.43	0.29	0.64	29	45708	16	0	16	0	72
SRP_00008	Bacteria_small_SRP links to Rfam database...	0.65	0.52	0.81	13	2910	3	0	3	0	12
SRP_00011	Plant_SRP links to Rfam database...	0.65	0.48	0.88	50	46303	7	0	7	0	54
SRP_00015	Plant_SRP links to Rfam database...	0.53	0.36	0.78	36	46314	10	0	10	0	63
SRP_00020	Bacteria_small_SRP links to Rfam database...	0.78	0.61	1.00	20	5545	0	0	0	0	13
SRP_00024	Bacteria_large_SRP links to Rfam database...	0.55	0.34	0.88	30	37641	4	0	4	0	57
SRP_00026	Bacteria_large_SRP links to Rfam database...	0.43	0.26	0.72	23	36824	9	1	8	0	65
SRP_00027	Bacteria_large_SRP links to Rfam database...	0.48	0.24	0.95	21	37106	1	0	1	0	66
SRP_00030	Bacteria_large_SRP links to Rfam database...	0.11	0.03	0.33	3	36847	6	0	6	0	85
SRP_00031	Bacteria_large_SRP links to Rfam database...	0.39	0.24	0.64	21	36282	12	1	11	0	68
SRP_00037	Bacteria_large_SRP links to Rfam database...	0.26	0.07	1.00	6	36579	0	0	0	0	81
SRP_00038	Bacteria_small_SRP links to Rfam database...	0.22	0.21	0.24	7	5021	22	0	22	0	26
SRP_00042	Bacteria_small_SRP links to Rfam database...	0.41	0.36	0.47	9	3986	11	3	7	1	16
SRP_00044	Bacteria_small_SRP links to Rfam database...	0.86	0.84	0.87	27	6074	5	1	3	1	5
SRP_00046	Bacteria_small_SRP links to Rfam database...	0.47	0.22	1.00	7	4746	0	0	0	0	25
SRP_00050	Metazoa_SRP links to Rfam database...	0.40	0.25	0.64	25	44811	14	2	12	0	74
SRP_00051	Bacteria_small_SRP links to Rfam database...	0.25	0.23	0.27	7	5434	19	1	18	0	23
SRP_00054	Bacteria_small_SRP links to Rfam database...	0.34	0.22	0.54	7	5552	6	0	6	0	25
SRP_00058	Bacteria_small_SRP links to Rfam database...	0.66	0.44	1.00	15	5763	0	0	0	0	19
SRP_00066	Metazoa_SRP links to Rfam database...	0.65	0.45	0.94	45	45403	3	0	3	0	55
SRP_00072	Bacteria_small_SRP links to Rfam database...	0.49	0.24	1.00	7	6321	0	0	0	0	22
SRP_00074	Bacteria_small_SRP links to Rfam database...	0.49	0.24	1.00	7	6548	0	0	0	0	22
SRP_00075	Bacteria_small_SRP links to Rfam database...	0.45	0.21	1.00	7	5558	0	0	0	0	27
SRP_00077	Bacteria_small_SRP links to Rfam database...	0.25	0.08	0.75	3	6666	1	0	1	0	34
SRP_00081	Bacteria_small_SRP links to Rfam database...	0.47	0.23	1.00	7	5558	0	0	0	0	24
SRP_00084	Bacteria_small_SRP links to Rfam database...	0.81	0.74	0.89	25	5432	3	1	2	0	9
SRP_00086	Metazoa_SRP links to Rfam database...	0.68	0.46	1.00	46	44207	0	0	0	0	54
SRP_00088	Bacteria_large_SRP links to Rfam database...	0.29	0.19	0.44	17	34152	22	2	20	0	72
SRP_00089	Bacteria_large_SRP links to Rfam database...	0.45	0.21	0.95	19	35758	1	0	1	0	71
SRP_00090	Bacteria_large_SRP links to Rfam database...	0.46	0.22	0.95	20	35490	1	0	1	0	70
SRP_00094	Bacteria_small_SRP links to Rfam database...	0.46	0.38	0.56	9	4079	7	2	5	0	15
SRP_00095	Bacteria_small_SRP links to Rfam database...	0.14	0.12	0.18	3	3988	14	1	13	0	22
SRP_00098	Bacteria_small_SRP links to Rfam database...	0.62	0.49	0.78	18	6418	5	1	4	0	19
SRP_00102	Metazoa_SRP links to Rfam database...	0.23	0.16	0.35	16	44505	30	3	27	0	85
SRP_00103	Metazoa_SRP links to Rfam database...	0.31	0.23	0.42	23	45396	32	0	32	0	79
SRP_00105	Bacteria_small_SRP links to Rfam database...	0.45	0.21	1.00	7	5558	0	0	0	0	27
SRP_00107	Bacteria_small_SRP links to Rfam database...	0.72	0.53	1.00	10	3645	0	0	0	0	9
SRP_00121	Bacteria_small_SRP links to Rfam database...	0.53	0.28	1.00	7	4271	0	0	0	0	18
SRP_00128	Bacteria_small_SRP links to Rfam database...	0.77	0.64	0.92	23	6761	2	1	1	0	13
SRP_00132	Bacteria_small_SRP links to Rfam database...	0.49	0.24	1.00	7	4844	0	0	0	0	22
SRP_00134	Bacteria_large_SRP links to Rfam database...	0.68	0.55	0.84	16	5976	3	0	3	0	13
SRP_00141	Bacteria_small_SRP links to Rfam database...	0.74	0.61	0.89	25	6300	3	1	2	0	16
SRP_00152	Plant_SRP links to Rfam database...	0.46	0.38	0.57	39	45684	30	6	24	0	64
SRP_00161	Bacteria_small_SRP links to Rfam database...	0.56	0.32	1.00	7	2843	0	0	0	0	15
SRP_00162	Bacteria_small_SRP links to Rfam database...	0.55	0.30	1.00	7	2919	0	0	0	0	16
SRP_00163	Bacteria_small_SRP links to Rfam database...	0.66	0.54	0.82	14	3469	3	0	3	0	12
SRP_00164	Bacteria_small_SRP links to Rfam database...	0.53	0.40	0.70	14	6883	6	1	5	0	21
SRP_00170	Bacteria_small_SRP links to Rfam database...	0.48	0.40	0.59	10	4078	7	1	6	0	15
SRP_00171	Metazoa_SRP links to Rfam database...	0.47	0.34	0.65	30	45405	16	0	16	0	58
SRP_00173	Bacteria_large_SRP links to Rfam database...	0.49	0.27	0.89	24	38199	3	0	3	0	66
SRP_00174	Bacteria_large_SRP links to Rfam database...	0.44	0.23	0.83	20	38757	4	0	4	0	66
SRP_00178	Plant_SRP links to Rfam database...	0.55	0.40	0.75	41	45698	14	4	10	0	61
SRP_00179	Plant_SRP links to Rfam database...	0.59	0.42	0.85	44	46004	8	1	7	0	61
SRP_00181	Plant_SRP links to Rfam database...	0.80	0.67	0.96	68	45985	5	0	3	2	34
SRP_00182	Plant_SRP links to Rfam database...	0.52	0.38	0.73	38	46004	14	0	14	0	63
SRP_00184	Plant_SRP links to Rfam database...	0.38	0.25	0.58	25	46013	18	0	18	0	75
SRP_00188	Plant_SRP links to Rfam database...	0.52	0.42	0.65	33	31074	18	3	15	0	46
SRP_00194	Bacteria_small_SRP links to Rfam database...	0.53	0.29	1.00	6	3234	0	0	0	0	15
SRP_00200	Bacteria_small_SRP links to Rfam database...	0.27	0.11	0.67	4	6897	2	0	2	0	32
SRP_00209	Bacteria_small_SRP links to Rfam database...	0.32	0.22	0.46	6	4643	7	1	6	0	21
SRP_00213	Bacteria_small_SRP links to Rfam database...	0.46	0.36	0.60	9	4171	6	1	5	0	16
SRP_00215	Bacteria_small_SRP links to Rfam database...	0.53	0.28	1.00	7	3233	0	0	0	0	18
SRP_00227	Bacteria_small_SRP links to Rfam database...	0.88	0.87	0.90	27	5121	3	1	2	0	4
SRP_00228	Metazoa_SRP links to Rfam database...	0.67	0.48	0.92	46	45401	4	1	3	0	49
SRP_00231	Bacteria_small_SRP links to Rfam database...	0.45	0.21	1.00	7	5453	0	0	0	0	27
SRP_00233	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	5140	11	1	10	0	33
SRP_00234	Bacteria_large_SRP links to Rfam database...	0.19	0.03	1.00	3	36312	0	0	0	0	83
SRP_00250	Bacteria_small_SRP links to Rfam database...	0.78	0.61	1.00	22	6764	0	0	0	0	14
SRP_00251	Bacteria_small_SRP links to Rfam database...	0.73	0.56	0.95	20	7000	1	0	1	0	16
SRP_00266	Bacteria_small_SRP links to Rfam database...	0.63	0.59	0.68	17	4631	9	1	7	1	12
SRP_00268	Bacteria_small_SRP links to Rfam database...	0.54	0.44	0.67	12	4168	6	1	5	0	15
SRP_00269	Bacteria_small_SRP links to Rfam database...	0.76	0.58	1.00	19	5031	0	0	0	0	14
SRP_00270	Bacteria_small_SRP links to Rfam database...	0.44	0.19	1.00	6	4650	0	0	0	0	25
SRP_00271	Bacteria_small_SRP links to Rfam database...	0.27	0.13	0.60	3	3235	2	0	2	0	21
SRP_00273	Bacteria_small_SRP links to Rfam database...	0.71	0.58	0.88	23	6760	3	1	2	0	17
SRP_00274	Bacteria_small_SRP links to Rfam database...	0.75	0.63	0.89	24	6876	3	1	2	0	14
SRP_00295	Bacteria_small_SRP links to Rfam database...	0.51	0.26	1.00	10	6893	0	0	0	0	28
SRP_00303	Bacteria_small_SRP links to Rfam database...	0.69	0.56	0.86	18	6649	3	0	3	0	14
SRP_00308	Bacteria_large_SRP links to Rfam database...	0.41	0.26	0.66	23	36280	12	1	11	0	65
SRP_00310	Bacteria_small_SRP links to Rfam database...	0.84	0.83	0.86	19	2904	3	0	3	0	4
SRP_00312	Bacteria_small_SRP links to Rfam database...	0.51	0.41	0.65	11	4169	6	1	5	0	16
SRP_00315	Bacteria_small_SRP links to Rfam database...	0.84	0.83	0.86	19	2904	3	0	3	0	4
SRP_00317	Metazoa_SRP links to Rfam database...	0.63	0.43	0.93	42	45105	3	0	3	0	56
SRP_00318	Bacteria_small_SRP links to Rfam database...	0.84	0.83	0.86	19	2981	3	0	3	0	4
SRP_00325	Bacteria_small_SRP links to Rfam database...	0.87	0.76	1.00	25	4346	0	0	0	0	8
SRP_00326	Bacteria_small_SRP links to Rfam database...	0.40	0.16	1.00	5	5045	0	0	0	0	26
SRP_00333	Bacteria_small_SRP links to Rfam database...	0.38	0.15	1.00	5	5146	0	0	0	0	29
SRP_00335	Bacteria_large_SRP links to Rfam database...	0.52	0.44	0.63	17	35218	15	4	6	5	22
SRP_00337	Bacteria_large_SRP links to Rfam database...	0.44	0.30	0.66	27	35470	15	3	11	1	64
SRP_00338	Bacteria_small_SRP links to Rfam database...	0.93	0.89	0.97	32	5427	1	0	1	0	4
SRP_00341	Bacteria_small_SRP links to Rfam database...	0.47	0.23	1.00	7	4746	0	0	0	0	24
SRP_00342	Bacteria_small_SRP links to Rfam database...	0.49	0.24	1.00	6	3999	0	0	0	0	19
SRP_00347	Metazoa_SRP links to Rfam database...	0.32	0.21	0.49	20	46624	21	3	18	0	76
SRP_00350	Bacteria_small_SRP links to Rfam database...	0.55	0.37	0.83	10	3904	2	1	1	0	17
SRP_00357	Bacteria_small_SRP links to Rfam database...	0.83	0.75	0.93	27	5327	2	1	1	0	9
SRP_00358	Bacteria_small_SRP links to Rfam database...	0.53	0.29	1.00	10	6318	0	0	0	0	25
SRP_00367	Bacteria_small_SRP links to Rfam database...	0.13	0.09	0.21	3	6772	11	0	11	0	32
SRP_00368	Metazoa_SRP links to Rfam database...	0.26	0.17	0.40	17	43913	26	3	23	0	81
SRP_00369	Bacteria_small_SRP links to Rfam database...	0.77	0.69	0.86	24	5750	5	1	3	1	11
SRP_00383	Bacteria_small_SRP links to Rfam database...	0.43	0.29	0.64	7	3229	4	0	4	0	17
TMR_00017	tmRNA links to Rfam database...	0.44	0.23	0.85	23	67134	8	0	4	4	79
TMR_00018	tmRNA links to Rfam database...	0.29	0.13	0.67	12	64602	10	0	6	4	80
TMR_00038	tmRNA links to Rfam database...	0.49	0.25	0.93	28	71223	4	1	1	2	82
TMR_00042	tmRNA links to Rfam database...	0.22	0.12	0.40	12	62805	21	0	18	3	86
TMR_00046	tmRNA links to Rfam database...	0.31	0.22	0.44	21	62787	30	4	23	3	75
TMR_00048	tmRNA links to Rfam database...	0.28	0.20	0.40	19	64933	33	5	23	5	76
TMR_00080	tmRNA links to Rfam database...	0.47	0.29	0.76	28	70463	9	0	9	0	68
TMR_00082	tmRNA links to Rfam database...	0.44	0.30	0.63	29	67850	21	1	16	4	67
TMR_00123	tmRNA links to Rfam database...	0.41	0.22	0.76	22	66401	12	0	7	5	79
TMR_00137	tmRNA links to Rfam database...	0.33	0.20	0.55	18	61042	21	2	13	6	71
TMR_00142	tmRNA links to Rfam database...	0.12	0.07	0.21	7	70843	33	8	18	7	95
TMR_00207	tmRNA links to Rfam database...	0.32	0.18	0.54	19	72355	16	6	10	0	84
TMR_00257	tmRNA links to Rfam database...	0.46	0.29	0.76	28	67124	14	0	9	5	70
TMR_00271	tmRNA links to Rfam database...	0.28	0.14	0.57	13	64238	15	1	9	5	78
TMR_00332	tmRNA links to Rfam database...	0.40	0.22	0.71	22	67130	14	0	9	5	77
TMR_00366	tmRNA links to Rfam database...	0.32	0.17	0.59	17	67867	23	3	9	11	83
TMR_00378	tmRNA links to Rfam database...	0.32	0.18	0.59	17	67867	23	3	9	11	80
TMR_00399	tmRNA links to Rfam database...	0.18	0.09	0.36	8	64958	14	7	7	0	86
TMR_00404	tmRNA links to Rfam database...	0.21	0.11	0.42	10	67504	25	4	10	11	82
TMR_00427	tmRNA links to Rfam database...	0.55	0.32	0.94	31	67495	7	0	2	5	66
TMR_00443	tmRNA links to Rfam database...	0.41	0.27	0.64	28	67117	20	1	15	4	76
TMR_00451	tmRNA links to Rfam database...	0.17	0.11	0.25	10	63506	34	6	24	4	79
TMR_00458	tmRNA links to Rfam database...	0.18	0.09	0.38	8	63525	16	1	12	3	85
TMR_00469	tmRNA links to Rfam database...	0.50	0.31	0.79	31	64581	12	1	7	4	69
TMR_00472	tmRNA links to Rfam database...	0.50	0.30	0.83	29	64585	10	1	5	4	68
TMR_00519	tmRNA links to Rfam database...	0.28	0.18	0.44	17	63151	27	2	20	5	78
TMR_00520	tmRNA links to Rfam database...	0.34	0.19	0.59	19	63158	13	4	9	0	80
TMR_00522	tmRNA links to Rfam database...	0.38	0.20	0.73	19	63164	7	1	6	0	78
TMR_00528	tmRNA links to Rfam database...	0.40	0.23	0.71	22	63159	13	2	7	4	75
TMR_00540	tmRNA links to Rfam database...	0.30	0.18	0.50	19	73498	24	2	17	5	85
TMR_00568	tmRNA links to Rfam database...	0.33	0.17	0.65	17	60700	14	0	9	5	82
TMR_00571	tmRNA links to Rfam database...	0.37	0.19	0.70	19	60699	13	0	8	5	80
TMR_00580	tmRNA links to Rfam database...	0.35	0.19	0.66	19	60697	15	2	8	5	81
TMR_00584	tmRNA links to Rfam database...	0.31	0.15	0.63	15	61051	15	1	8	6	82
TMR_00586	tmRNA links to Rfam database...	0.36	0.20	0.68	19	61047	14	1	8	5	78
TMR_00616	tmRNA links to Rfam database...	0.46	0.28	0.76	28	67124	12	3	6	3	71
TMR_00699	tmRNA links to Rfam database...	0.32	0.17	0.61	17	67133	12	3	8	1	85
TMR_00702	tmRNA links to Rfam database...	0.42	0.24	0.73	24	67128	10	3	6	1	76
TMR_00703	tmRNA links to Rfam database...	0.52	0.35	0.78	35	67483	15	1	9	5	64

^top

Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.

Table of contents:

Overview

Performance plots

Performance of MXScarna(20) - scored higher in this pairwise comparison

1. Total counts & total scores for MXScarna(20)

2. Individual counts for MXScarna(20) [ download as .csv ]

Performance of CMfinder(20) - scored lower in this pairwise comparison

1. Total counts & total scores for CMfinder(20)

2. Individual counts for CMfinder(20) [ download as .csv ]