CompaRNA - on-line benchmarks of RNA structure prediction methods

Laboratory of Structural Bioinformatics @ Adam Mickiewicz University in Poznan

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Overview

Metric	Multilign(20)		McQFold
MCC	0.685	>	0.485
Average MCC ± 95% Confidence Intervals	0.708 ± 0.022	>	0.562 ± 0.023
Sensitivity	0.617	>	0.465
Positive Predictive Value	0.762	>	0.509
Total TP	18918	>	14266
Total TN	14077091	>	14073885
Total FP	7193	<	14910
Total FP CONTRA	753	<	1761
Total FP INCONS	5168	<	12018
Total FP COMP	1272	>	1131
Total FN	11738	<	16390
P-value	3.56938820447e-08

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Performance plots

Comparison of performance of Multilign(20) and McQFold. Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data (individual counts for Multilign(20) and McQFold).
Average Matthews Correlation Coefficients (MCC) with 95% confidence intervals (CIs) were plotted for different RNA families, for which at least 3 members were present in the benchmarking dataset. 'n' denotes the number of MCCs used to calculate the average and CI. See tables below for raw data (individual counts for Multilign(20) and McQFold).
Comparison of average Matthews Correlation Coefficients (MCCs) for Multilign(20) and McQFold. The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data (individual counts for Multilign(20) and McQFold).

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Performance of Multilign(20) - scored higher in this pairwise comparison

1. Total counts & total scores for Multilign(20)

Total Base Pair Counts
Total TP	18918
Total TN	14077091
Total FP	7193
Total FP CONTRA	753
Total FP INCONS	5168
Total FP COMP	1272
Total FN	11738

Total Scores
MCC	0.685
Average MCC ± 95% Confidence Intervals	0.708 ± 0.022
Sensitivity	0.617
Positive Predictive Value	0.762
Nr of predictions	534

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2. Individual counts for Multilign(20) [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00005	RNaseP_bact_a links to Rfam database...	0.73	0.66	0.82	77	57876	23	0	17	6	40
ASE_00006	RNaseP_bact_a links to Rfam database...	0.78	0.76	0.81	71	47498	22	1	16	5	22
ASE_00007	RNaseP_bact_a links to Rfam database...	0.70	0.63	0.78	69	59596	25	0	20	5	41
ASE_00012	RNaseP_bact_a links to Rfam database...	0.62	0.56	0.69	69	73820	36	3	28	5	54
ASE_00018	RNaseP_bact_a links to Rfam database...	0.75	0.67	0.84	90	80494	19	1	16	2	44
ASE_00020	RNaseP_bact_a links to Rfam database...	0.49	0.43	0.56	54	73823	43	4	39	0	72
ASE_00021	RNaseP_bact_a links to Rfam database...	0.62	0.51	0.75	82	104086	30	5	23	2	78
ASE_00035	RNaseP_bact_a links to Rfam database...	0.62	0.57	0.68	67	70402	35	3	28	4	51
ASE_00037	RNaseP_bact_a links to Rfam database...	0.56	0.49	0.64	54	59255	31	4	27	0	56
ASE_00038	RNaseP_bact_a links to Rfam database...	0.57	0.53	0.61	54	53540	37	3	31	3	47
ASE_00040	RNaseP_bact_a links to Rfam database...	0.69	0.62	0.75	83	78893	28	0	27	1	50
ASE_00041	RNaseP_bact_a links to Rfam database...	0.72	0.67	0.78	72	57538	21	1	19	1	36
ASE_00042	RNaseP_bact_a links to Rfam database...	0.50	0.41	0.61	60	90002	41	2	36	3	85
ASE_00044	RNaseP_bact_a links to Rfam database...	0.83	0.77	0.89	81	54524	12	0	10	2	24
ASE_00045	RNaseP_bact_b links to Rfam database...	0.80	0.75	0.86	60	47208	18	0	10	8	20
ASE_00064	RNaseP_bact_a links to Rfam database...	0.76	0.67	0.86	60	45381	21	0	10	11	29
ASE_00068	RNaseP_bact_a links to Rfam database...	0.76	0.71	0.82	60	37602	17	0	13	4	25
ASE_00074	RNaseP_bact_a links to Rfam database...	0.82	0.78	0.87	93	67789	14	1	13	0	26
ASE_00075	RNaseP_bact_a links to Rfam database...	0.75	0.64	0.87	104	108691	24	3	13	8	58
ASE_00077	RNaseP_bact_a links to Rfam database...	0.61	0.55	0.67	47	45080	33	5	18	10	39
ASE_00078	RNaseP_bact_a links to Rfam database...	0.81	0.77	0.84	64	42995	18	0	12	6	19
ASE_00080	RNaseP_bact_a links to Rfam database...	0.52	0.48	0.57	59	71528	44	5	39	0	64
ASE_00081	RNaseP_bact_a links to Rfam database...	0.80	0.75	0.86	73	49685	13	0	12	1	24
ASE_00082	RNaseP_bact_a links to Rfam database...	0.58	0.53	0.63	62	70402	47	3	33	11	54
ASE_00083	RNaseP_bact_a links to Rfam database...	0.82	0.74	0.91	81	62392	10	0	8	2	29
ASE_00084	RNaseP_bact_a links to Rfam database...	0.60	0.55	0.67	54	53547	27	1	26	0	45
ASE_00087	RNaseP_bact_a links to Rfam database...	0.47	0.40	0.57	57	88310	43	2	41	0	87
ASE_00090	RNaseP_bact_a links to Rfam database...	0.52	0.46	0.60	46	55534	36	5	26	5	55
ASE_00092	RNaseP_bact_a links to Rfam database...	0.69	0.63	0.76	71	63452	24	0	23	1	42
ASE_00099	RNaseP_bact_a links to Rfam database...	0.81	0.76	0.86	91	64514	16	2	13	1	29
ASE_00104	RNaseP_bact_a links to Rfam database...	0.82	0.76	0.89	90	64160	16	1	10	5	29
ASE_00105	RNaseP_bact_a links to Rfam database...	0.53	0.49	0.58	54	64168	41	6	33	2	57
ASE_00107	RNaseP_bact_a links to Rfam database...	0.64	0.57	0.73	72	73055	28	1	25	2	55
ASE_00114	RNaseP_bact_b links to Rfam database...	0.56	0.52	0.61	40	45385	41	0	26	15	37
ASE_00115	RNaseP_bact_a links to Rfam database...	0.72	0.61	0.84	62	54541	12	1	11	0	39
ASE_00118	RNaseP_bact_a links to Rfam database...	0.55	0.49	0.62	50	60645	33	1	30	2	52
ASE_00119	RNaseP_bact_a links to Rfam database...	0.55	0.50	0.61	54	62747	36	1	33	2	54
ASE_00123	RNaseP_bact_a links to Rfam database...	0.55	0.51	0.60	43	38431	33	1	28	4	42
ASE_00126	RNaseP_bact_a links to Rfam database...	0.70	0.70	0.71	57	40390	30	3	20	7	25
ASE_00128	RNaseP_bact_a links to Rfam database...	0.74	0.62	0.87	62	53230	13	1	8	4	38
ASE_00129	RNaseP_bact_a links to Rfam database...	0.69	0.63	0.75	70	62742	23	2	21	0	41
ASE_00131	RNaseP_bact_a links to Rfam database...	0.48	0.42	0.54	36	39273	36	2	29	5	49
ASE_00134	RNaseP_bact_a links to Rfam database...	0.71	0.67	0.74	64	50317	23	3	19	1	31
ASE_00135	RNaseP_bact_a links to Rfam database...	0.54	0.49	0.60	53	63102	40	6	29	5	56
ASE_00136	RNaseP_bact_a links to Rfam database...	0.83	0.78	0.89	72	48124	16	0	9	7	20
ASE_00137	RNaseP_bact_a links to Rfam database...	0.52	0.48	0.56	47	48432	42	0	37	5	51
ASE_00138	RNaseP_bact_a links to Rfam database...	0.79	0.73	0.87	59	40402	12	3	6	3	22
ASE_00140	RNaseP_bact_a links to Rfam database...	0.46	0.38	0.55	48	70789	40	3	36	1	77
ASE_00142	RNaseP_bact_a links to Rfam database...	0.72	0.67	0.78	82	67056	25	3	20	2	40
ASE_00146	RNaseP_bact_a links to Rfam database...	0.64	0.54	0.76	67	70788	22	1	20	1	57
ASE_00153	RNaseP_nuc links to Rfam database...	0.38	0.37	0.39	27	57560	76	9	34	33	46
ASE_00161	RNaseP_bact_b links to Rfam database...	0.66	0.63	0.70	55	53549	31	1	23	7	32
ASE_00163	RNaseP_bact_a links to Rfam database...	0.69	0.67	0.71	62	53214	27	7	18	2	31
ASE_00165	RNaseP_bact_a links to Rfam database...	0.54	0.49	0.60	49	52893	35	6	27	2	52
ASE_00170	RNaseP_bact_a links to Rfam database...	0.83	0.77	0.90	72	48748	10	2	6	2	21
ASE_00171	RNaseP_bact_a links to Rfam database...	0.88	0.80	0.96	75	48438	8	0	3	5	19
ASE_00172	RNaseP_bact_a links to Rfam database...	0.66	0.58	0.76	61	58916	25	3	16	6	45
ASE_00174	RNaseP_bact_a links to Rfam database...	0.53	0.45	0.63	49	60997	32	1	28	3	60
ASE_00175	RNaseP_bact_a links to Rfam database...	0.63	0.55	0.73	59	59950	27	2	20	5	48
ASE_00179	RNaseP_bact_a links to Rfam database...	0.76	0.69	0.84	58	44184	15	1	10	4	26
ASE_00180	RNaseP_bact_a links to Rfam database...	0.77	0.70	0.85	70	51278	15	3	9	3	30
ASE_00181	RNaseP_bact_a links to Rfam database...	0.67	0.63	0.71	67	57536	30	0	27	3	39
ASE_00182	RNaseP_bact_a links to Rfam database...	0.48	0.40	0.57	55	84158	42	2	40	0	81
ASE_00183	RNaseP_bact_a links to Rfam database...	0.70	0.63	0.77	71	61333	23	0	21	2	42
ASE_00184	RNaseP_bact_a links to Rfam database...	0.76	0.68	0.85	69	54534	20	0	12	8	33
ASE_00185	RNaseP_bact_a links to Rfam database...	0.42	0.38	0.47	48	73434	58	2	52	4	80
ASE_00190	RNaseP_bact_b links to Rfam database...	0.46	0.37	0.57	33	45393	28	4	21	3	57
ASE_00197	RNaseP_bact_a links to Rfam database...	0.42	0.36	0.50	52	89150	54	1	50	3	93
ASE_00198	RNaseP_bact_a links to Rfam database...	0.63	0.58	0.69	59	52564	30	3	24	3	43
ASE_00203	RNaseP_bact_a links to Rfam database...	0.56	0.52	0.61	50	46583	36	0	32	4	46
ASE_00212	RNaseP_bact_a links to Rfam database...	0.66	0.59	0.74	88	93842	33	1	30	2	60
ASE_00214	RNaseP_bact_a links to Rfam database...	0.83	0.79	0.87	81	56187	17	3	9	5	22
ASE_00215	RNaseP_bact_a links to Rfam database...	0.18	0.15	0.23	15	48450	55	4	47	4	84
ASE_00216	RNaseP_bact_a links to Rfam database...	0.71	0.67	0.74	55	39266	26	2	17	7	27
ASE_00217	RNaseP_bact_a links to Rfam database...	0.50	0.46	0.55	41	40395	39	1	33	5	49
ASE_00221	RNaseP_bact_a links to Rfam database...	0.65	0.56	0.74	66	64531	24	0	23	1	51
ASE_00228	RNaseP_bact_a links to Rfam database...	0.69	0.67	0.72	58	46890	26	4	19	3	28
ASE_00229	RNaseP_bact_a links to Rfam database...	0.60	0.57	0.63	50	42406	32	4	26	2	37
ASE_00231	RNaseP_bact_a links to Rfam database...	0.44	0.40	0.50	38	47819	42	3	35	4	58
ASE_00232	RNaseP_bact_a links to Rfam database...	0.81	0.81	0.81	68	38419	17	6	10	1	16
ASE_00234	RNaseP_bact_a links to Rfam database...	0.68	0.60	0.76	78	75363	27	6	19	2	51
ASE_00238	RNaseP_bact_a links to Rfam database...	0.50	0.45	0.55	51	64169	42	6	35	1	63
ASE_00241	RNaseP_bact_a links to Rfam database...	0.78	0.71	0.86	62	43884	15	1	9	5	25
ASE_00242	RNaseP_bact_a links to Rfam database...	0.72	0.66	0.80	74	60982	24	1	18	5	38
ASE_00254	RNaseP_bact_a links to Rfam database...	0.48	0.46	0.50	38	36780	39	5	33	1	44
ASE_00257	RNaseP_bact_a links to Rfam database...	0.70	0.64	0.78	62	50960	25	1	17	7	35
ASE_00263	RNaseP_bact_a links to Rfam database...	0.46	0.41	0.52	49	70405	47	6	40	1	71
ASE_00267	RNaseP_bact_a links to Rfam database...	0.75	0.68	0.82	60	45077	21	1	12	8	28
ASE_00270	RNaseP_bact_a links to Rfam database...	0.56	0.49	0.64	63	72292	38	2	33	3	65
ASE_00274	RNaseP_bact_a links to Rfam database...	0.59	0.51	0.67	53	55532	28	5	21	2	50
ASE_00277	RNaseP_bact_a links to Rfam database...	0.79	0.75	0.83	68	48123	16	0	14	2	23
ASE_00279	RNaseP_bact_a links to Rfam database...	0.78	0.73	0.82	74	53211	20	2	14	4	27
ASE_00280	RNaseP_bact_a links to Rfam database...	0.72	0.66	0.78	65	51920	21	1	17	3	33
ASE_00281	RNaseP_bact_a links to Rfam database...	0.80	0.73	0.89	64	44479	15	1	7	7	24
ASE_00282	RNaseP_bact_a links to Rfam database...	0.48	0.42	0.56	53	77721	42	3	38	1	74
ASE_00283	RNaseP_bact_a links to Rfam database...	0.73	0.67	0.80	72	61686	23	0	18	5	35
ASE_00284	RNaseP_bact_a links to Rfam database...	0.65	0.59	0.71	64	58221	29	3	23	3	44
ASE_00285	RNaseP_bact_a links to Rfam database...	0.58	0.51	0.67	62	68914	32	3	27	2	60
ASE_00286	RNaseP_bact_a links to Rfam database...	0.82	0.74	0.91	68	46590	10	1	6	3	24
ASE_00287	RNaseP_bact_a links to Rfam database...	0.62	0.56	0.68	58	54861	28	0	27	1	45
ASE_00292	RNaseP_bact_a links to Rfam database...	0.74	0.64	0.84	89	81704	22	2	15	5	49
ASE_00294	RNaseP_bact_a links to Rfam database...	0.75	0.63	0.89	108	114359	16	1	13	2	63
ASE_00296	RNaseP_bact_a links to Rfam database...	0.64	0.54	0.76	78	91704	26	1	23	2	67
ASE_00297	RNaseP_bact_a links to Rfam database...	0.62	0.53	0.72	52	52903	21	1	19	1	46
ASE_00298	RNaseP_bact_a links to Rfam database...	0.48	0.43	0.53	49	67435	46	2	42	2	64
ASE_00305	RNaseP_bact_b links to Rfam database...	0.77	0.73	0.82	62	54539	23	0	14	9	23
ASE_00321	RNaseP_bact_b links to Rfam database...	0.73	0.69	0.77	61	54536	25	3	15	7	27
ASE_00328	RNaseP_bact_b links to Rfam database...	0.76	0.67	0.87	75	72685	23	1	10	12	37
ASE_00332	RNaseP_bact_a links to Rfam database...	0.45	0.37	0.55	51	81717	44	3	39	2	87
ASE_00340	RNaseP_bact_a links to Rfam database...	0.58	0.54	0.63	46	45983	31	8	19	4	39
ASE_00342	RNaseP_bact_a links to Rfam database...	0.82	0.76	0.88	87	62382	12	2	10	0	28
ASE_00353	RNaseP_bact_a links to Rfam database...	0.65	0.62	0.69	66	57874	35	2	28	5	41
ASE_00361	RNaseP_bact_a links to Rfam database...	0.58	0.49	0.69	62	75376	29	3	25	1	65
ASE_00362	RNaseP_bact_a links to Rfam database...	0.74	0.65	0.86	59	48136	10	0	10	0	32
ASE_00363	RNaseP_bact_a links to Rfam database...	0.81	0.73	0.90	69	51283	14	1	7	6	25
ASE_00364	RNaseP_bact_a links to Rfam database...	0.63	0.56	0.71	59	54202	29	1	23	5	46
ASE_00366	RNaseP_bact_a links to Rfam database...	0.62	0.57	0.67	56	58570	31	6	21	4	42
ASE_00367	RNaseP_bact_a links to Rfam database...	0.57	0.53	0.61	46	42995	36	1	29	6	40
ASE_00369	RNaseP_bact_a links to Rfam database...	0.82	0.74	0.92	79	55859	7	1	6	0	28
ASE_00370	RNaseP_bact_a links to Rfam database...	0.86	0.81	0.92	68	41831	14	0	6	8	16
ASE_00372	RNaseP_bact_a links to Rfam database...	0.67	0.59	0.77	59	51926	19	1	17	1	41
ASE_00374	RNaseP_bact_a links to Rfam database...	0.81	0.73	0.90	64	44779	8	1	6	1	24
ASE_00376	RNaseP_bact_a links to Rfam database...	0.66	0.61	0.71	64	56863	28	1	25	2	41
ASE_00377	RNaseP_bact_a links to Rfam database...	0.61	0.55	0.69	59	57544	29	3	24	2	48
ASE_00379	RNaseP_bact_a links to Rfam database...	0.54	0.48	0.61	43	45986	38	0	27	11	46
ASE_00382	RNaseP_bact_a links to Rfam database...	0.86	0.81	0.92	68	41831	14	0	6	8	16
ASE_00383	RNaseP_bact_a links to Rfam database...	0.79	0.72	0.85	76	54526	14	4	9	1	29
ASE_00384	RNaseP_bact_a links to Rfam database...	0.70	0.65	0.75	60	48436	26	4	16	6	32
ASE_00386	RNaseP_bact_a links to Rfam database...	0.65	0.60	0.70	58	50320	27	5	20	2	38
ASE_00387	RNaseP_bact_a links to Rfam database...	0.67	0.63	0.70	66	55851	29	0	28	1	38
ASE_00388	RNaseP_bact_a links to Rfam database...	0.51	0.47	0.56	42	45678	40	2	31	7	47
ASE_00390	RNaseP_bact_a links to Rfam database...	0.85	0.80	0.89	68	42119	17	0	8	9	17
ASE_00393	RNaseP_bact_a links to Rfam database...	0.70	0.63	0.77	59	47818	20	1	17	2	34
ASE_00394	RNaseP_bact_a links to Rfam database...	0.80	0.72	0.88	67	46895	13	4	5	4	26
ASE_00395	RNaseP_bact_a links to Rfam database...	0.73	0.69	0.77	58	41541	21	0	17	4	26
ASE_00396	RNaseP_bact_a links to Rfam database...	0.72	0.66	0.79	55	41546	19	2	13	4	28
ASE_00397	RNaseP_bact_a links to Rfam database...	0.74	0.69	0.79	72	54524	23	1	18	4	33
ASE_00398	RNaseP_bact_a links to Rfam database...	0.68	0.62	0.76	64	55861	29	1	19	9	40
ASE_00400	RNaseP_bact_a links to Rfam database...	0.74	0.69	0.80	73	57879	19	1	17	1	33
ASE_00401	RNaseP_bact_a links to Rfam database...	0.52	0.44	0.63	55	76940	40	0	33	7	71
ASE_00402	RNaseP_bact_a links to Rfam database...	0.76	0.69	0.84	59	42416	15	1	10	4	26
ASE_00403	RNaseP_bact_a links to Rfam database...	0.66	0.58	0.76	62	55863	25	3	17	5	45
ASE_00404	RNaseP_bact_a links to Rfam database...	0.78	0.73	0.83	62	42996	17	1	12	4	23
ASE_00406	RNaseP_bact_a links to Rfam database...	0.82	0.73	0.91	69	48752	15	0	7	8	25
ASE_00411	RNaseP_bact_a links to Rfam database...	0.57	0.53	0.62	47	49379	30	10	19	1	42
ASE_00412	RNaseP_bact_a links to Rfam database...	0.56	0.50	0.62	53	58226	34	3	29	2	52
ASE_00413	RNaseP_bact_a links to Rfam database...	0.60	0.57	0.64	46	44479	27	2	24	1	35
ASE_00415	RNaseP_bact_a links to Rfam database...	0.60	0.57	0.63	59	54853	40	2	32	6	44
ASE_00416	RNaseP_bact_a links to Rfam database...	0.69	0.59	0.80	75	77327	28	1	18	9	52
ASE_00419	RNaseP_bact_a links to Rfam database...	0.75	0.68	0.83	70	54862	16	3	11	2	33
ASE_00422	RNaseP_bact_a links to Rfam database...	0.65	0.63	0.67	59	46883	30	4	25	1	35
ASE_00423	RNaseP_bact_a links to Rfam database...	0.84	0.77	0.92	84	56862	10	1	6	3	25
ASE_00427	RNaseP_nuc links to Rfam database...	0.17	0.20	0.15	9	40695	59	19	32	8	37
ASE_00428	RNaseP_bact_a links to Rfam database...	0.57	0.54	0.60	68	76522	47	4	42	1	57
ASE_00430	RNaseP_bact_a links to Rfam database...	0.79	0.76	0.82	74	46881	16	2	14	0	23
ASE_00437	RNaseP_bact_a links to Rfam database...	0.67	0.60	0.75	81	79293	27	1	26	0	54
ASE_00441	RNaseP_bact_a links to Rfam database...	0.66	0.57	0.77	64	64178	19	2	17	0	48
ASE_00448	RNaseP_bact_a links to Rfam database...	0.63	0.59	0.67	66	64163	39	2	30	7	46
ASE_00451	RNaseP_bact_a links to Rfam database...	0.68	0.60	0.77	75	70779	24	1	21	2	50
CRW_00548	5S_rRNA links to Rfam database...	0.84	0.76	0.94	29	7350	2	0	2	0	9
CRW_00552	5S_rRNA links to Rfam database...	0.95	0.90	1.00	35	7105	2	0	0	2	4
CRW_00555	5S_rRNA links to Rfam database...	0.91	0.83	1.00	33	7593	0	0	0	0	7
CRW_00567	5S_rRNA links to Rfam database...	0.96	0.93	1.00	37	7466	3	0	0	3	3
CRW_00570	5S_rRNA links to Rfam database...	0.88	0.86	0.89	32	6867	7	0	4	3	5
CRW_00573	5S_rRNA links to Rfam database...	0.74	0.70	0.78	28	7104	8	0	8	0	12
CRW_01484	5S_rRNA links to Rfam database...	0.89	0.79	1.00	31	7472	1	0	0	1	8
CRW_01485	5S_rRNA links to Rfam database...	0.84	0.77	0.91	30	7470	4	0	3	1	9
CRW_01487	5S_rRNA links to Rfam database...	0.91	0.83	1.00	34	7469	1	0	0	1	7
CRW_01489	5S_rRNA links to Rfam database...	0.86	0.79	0.94	31	7470	3	0	2	1	8
CRW_01491	5S_rRNA links to Rfam database...	0.73	0.63	0.84	27	8353	7	0	5	2	16
CRW_01492	5S_rRNA links to Rfam database...	0.79	0.76	0.82	32	7587	9	0	7	2	10
CRW_01494	5S_rRNA links to Rfam database...	0.87	0.80	0.94	32	7106	2	0	2	0	8
CRW_01497	5S_rRNA links to Rfam database...	0.88	0.83	0.94	33	7105	3	0	2	1	7
CRW_01498	5S_rRNA links to Rfam database...	0.85	0.77	0.94	33	8093	3	0	2	1	10
CRW_01499	5S_rRNA links to Rfam database...	0.58	0.54	0.63	22	7966	13	3	10	0	19
CRW_01500	5S_rRNA links to Rfam database...	0.92	0.84	1.00	32	7718	3	0	0	3	6
CRW_01501	5S_rRNA links to Rfam database...	0.86	0.80	0.92	36	8476	3	0	3	0	9
CRW_01508	5S_rRNA links to Rfam database...	0.95	0.90	1.00	38	7963	2	0	0	2	4
CRW_01532	5S_rRNA links to Rfam database...	0.77	0.76	0.78	28	7104	11	0	8	3	9
CRW_01533	5S_rRNA links to Rfam database...	0.92	0.89	0.94	33	7105	3	0	2	1	4
CRW_01534	5S_rRNA links to Rfam database...	0.86	0.81	0.91	30	7107	5	0	3	2	7
CRW_01535	5S_rRNA links to Rfam database...	0.92	0.89	0.94	33	7105	4	0	2	2	4
CRW_01536	5S_rRNA links to Rfam database...	0.88	0.86	0.89	32	6985	4	0	4	0	5
CRW_01537	5S_rRNA links to Rfam database...	0.56	0.49	0.64	18	7112	12	0	10	2	19
CRW_01539	5S_rRNA links to Rfam database...	0.80	0.76	0.85	28	7107	8	0	5	3	9
CRW_01540	5S_rRNA links to Rfam database...	0.93	0.89	0.97	33	7106	3	0	1	2	4
CRW_01541	5S_rRNA links to Rfam database...	0.89	0.84	0.94	31	7107	4	0	2	2	6
CRW_01542	5S_rRNA links to Rfam database...	0.94	0.89	1.00	33	7107	1	0	0	1	4
CRW_01544	5S_rRNA links to Rfam database...	0.88	0.86	0.89	32	7104	9	0	4	5	5
CRW_01548	5S_rRNA links to Rfam database...	0.90	0.86	0.94	32	6987	3	0	2	1	5
CRW_01555	5S_rRNA links to Rfam database...	0.79	0.76	0.82	28	9011	9	0	6	3	9
CRW_01556	5S_rRNA links to Rfam database...	0.90	0.86	0.94	32	7106	4	0	2	2	5
CRW_01557	5S_rRNA links to Rfam database...	0.79	0.78	0.81	29	7104	13	0	7	6	8
CRW_01559	5S_rRNA links to Rfam database...	0.82	0.78	0.85	29	7226	10	0	5	5	8
CRW_01562	5S_rRNA links to Rfam database...	0.83	0.78	0.88	29	7107	7	0	4	3	8
CRW_01563	5S_rRNA links to Rfam database...	0.87	0.81	0.94	30	6871	2	0	2	0	7
CRW_01566	5S_rRNA links to Rfam database...	0.86	0.81	0.91	30	7107	4	0	3	1	7
CRW_01568	5S_rRNA links to Rfam database...	0.78	0.78	0.78	29	7103	11	0	8	3	8
CRW_01569	5S_rRNA links to Rfam database...	0.79	0.78	0.81	29	7104	10	0	7	3	8
CRW_01570	5S_rRNA links to Rfam database...	0.89	0.86	0.91	32	7105	7	0	3	4	5
CRW_01572	5S_rRNA links to Rfam database...	0.75	0.68	0.83	25	6991	9	0	5	4	12
CRW_01573	5S_rRNA links to Rfam database...	0.92	0.89	0.94	33	7225	3	0	2	1	4
CRW_01578	5S_rRNA links to Rfam database...	0.92	0.89	0.94	33	7105	6	0	2	4	4
CRW_01580	5S_rRNA links to Rfam database...	0.78	0.76	0.80	28	7105	10	0	7	3	9
CRW_01581	5S_rRNA links to Rfam database...	0.62	0.54	0.71	20	7112	9	0	8	1	17
CRW_01583	5S_rRNA links to Rfam database...	0.88	0.78	1.00	29	7111	1	0	0	1	8
CRW_01584	5S_rRNA links to Rfam database...	0.90	0.86	0.94	32	7106	4	0	2	2	5
CRW_01590	5S_rRNA links to Rfam database...	0.74	0.65	0.86	24	7112	7	0	4	3	13
CRW_01593	5S_rRNA links to Rfam database...	0.79	0.78	0.81	29	7104	9	0	7	2	8
CRW_01595	5S_rRNA links to Rfam database...	0.89	0.86	0.91	32	8480	5	0	3	2	5
CRW_01599	5S_rRNA links to Rfam database...	0.90	0.89	0.92	33	7104	5	0	3	2	4
CRW_01603	5S_rRNA links to Rfam database...	0.72	0.59	0.88	22	7115	6	0	3	3	15
CRW_01605	5S_rRNA links to Rfam database...	0.84	0.78	0.91	29	7108	7	0	3	4	8
CRW_01606	5S_rRNA links to Rfam database...	0.77	0.62	0.96	23	7116	2	0	1	1	14
CRW_01608	5S_rRNA links to Rfam database...	0.87	0.81	0.94	30	8353	5	0	2	3	7
CRW_01616	5S_rRNA links to Rfam database...	0.92	0.86	0.97	32	7107	3	0	1	2	5
CRW_01617	5S_rRNA links to Rfam database...	0.92	0.89	0.94	33	7105	3	0	2	1	4
CRW_01620	5S_rRNA links to Rfam database...	0.90	0.89	0.92	33	6985	5	0	3	2	4
CRW_01621	5S_rRNA links to Rfam database...	0.68	0.68	0.69	25	7104	12	0	11	1	12
CRW_01623	5S_rRNA links to Rfam database...	0.90	0.86	0.94	32	7106	4	0	2	2	5
CRW_01625	5S_rRNA links to Rfam database...	0.89	0.86	0.91	32	7105	6	0	3	3	5
PDB_00012	mir-TAR links to Rfam database...	1.00	1.00	1.00	7	399	3	0	0	3	0
PDB_00070	tRNA links to Rfam database...	0.93	0.88	1.00	21	2829	0	0	0	0	3
PDB_00213	Gammaretro_CES links to Rfam database...	0.86	0.78	0.94	32	5016	2	0	2	0	9
PDB_00229	tRNA links to Rfam database...	0.96	0.91	1.00	21	2754	0	0	0	0	2
PDB_00327	tRNA links to Rfam database...	0.96	0.91	1.00	21	3060	0	0	0	0	2
PDB_00362	tRNA links to Rfam database...	0.98	0.95	1.00	21	2829	0	0	0	0	1
PDB_00402	tRNA links to Rfam database...	0.84	0.83	0.86	19	2753	3	0	3	0	4
PDB_00431	tRNA links to Rfam database...	0.97	0.95	1.00	19	2192	1	0	0	1	1
PDB_00474	tRNA links to Rfam database...	0.96	0.91	1.00	21	2680	0	0	0	0	2
PDB_00553	mir-TAR links to Rfam database...	1.00	1.00	1.00	11	454	0	0	0	0	0
PDB_00571	tRNA links to Rfam database...	0.85	0.76	0.95	19	3301	1	1	0	0	6
PDB_00667	tRNA links to Rfam database...	0.95	0.91	1.00	20	2830	1	0	0	1	2
PDB_00741	Entero_5_CRE links to Rfam database...	0.87	0.76	1.00	13	690	0	0	0	0	4
PDB_00810	s2m links to Rfam database...	0.67	0.59	0.77	10	1068	3	0	3	0	7
PDB_00828	Purine links to Rfam database...	0.88	0.78	1.00	21	2464	0	0	0	0	6
PDB_00829	Purine links to Rfam database...	0.86	0.75	1.00	18	2260	2	0	0	2	6
PDB_00876	HIV_FE links to Rfam database...	0.97	0.95	1.00	19	971	0	0	0	0	1
PDB_01002	tRNA links to Rfam database...	0.95	0.90	1.00	19	2756	2	0	0	2	2
PDB_01020	Purine links to Rfam database...	0.86	0.74	1.00	17	2261	3	0	0	3	6
PDB_01050	UnaL2 links to Rfam database...	0.92	0.85	1.00	11	619	2	0	0	2	2
PDB_01053	tRNA links to Rfam database...	0.97	0.94	1.00	15	1363	0	0	0	0	1
PDB_01073	SAM links to Rfam database...	0.86	0.74	1.00	25	4346	1	0	0	1	9
PDB_01114	TPP links to Rfam database...	0.42	0.37	0.48	10	2829	11	1	10	0	17
PDB_01152	HIV_FS2 links to Rfam database...	0.88	0.79	1.00	11	550	0	0	0	0	3
PDB_01236	ykoK links to Rfam database...	0.88	0.81	0.96	44	11582	3	0	2	1	10
RFA_00389	Hammerhead_3 links to Rfam database...	0.70	0.60	0.82	9	1420	4	0	2	2	6
RFA_00390	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00391	Hammerhead_3 links to Rfam database...	0.57	0.47	0.70	7	1421	4	0	3	1	8
RFA_00396	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	2	0	0	2	1
RFA_00402	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	0	0	0	0	0
RFA_00409	Hammerhead_3 links to Rfam database...	0.70	0.60	0.82	9	1420	4	0	2	2	6
RFA_00416	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1470	2	0	0	2	0
RFA_00433	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00434	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00436	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00440	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1470	2	0	0	2	0
RFA_00442	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00444	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1525	1	0	0	1	0
RFA_00583	Y_RNA links to Rfam database...	0.51	0.53	0.50	8	4934	23	0	8	15	7
RFA_00584	Y_RNA links to Rfam database...	0.87	0.87	0.87	13	2911	14	0	2	12	2
RFA_00585	Y_RNA links to Rfam database...	0.93	0.93	0.93	14	4836	15	0	1	14	1
RFA_00586	Y_RNA links to Rfam database...	0.97	0.93	1.00	14	3902	12	0	0	12	1
RFA_00587	Y_RNA links to Rfam database...	0.93	0.93	0.93	14	4836	15	0	1	14	1
RFA_00588	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4545	10	0	0	10	0
RFA_00589	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4356	17	0	0	17	0
RFA_00594	Y_RNA links to Rfam database...	0.83	0.80	0.86	12	2761	14	0	2	12	3
RFA_00596	Y_RNA links to Rfam database...	0.74	0.67	0.83	10	5983	18	0	2	16	5
RFA_00599	Telomerase-vert links to Rfam database...	0.71	0.71	0.71	79	101363	50	13	20	17	32
RFA_00601	Telomerase-vert links to Rfam database...	0.58	0.54	0.61	62	99134	50	10	29	11	52
RFA_00658	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	1128	0	0	0	0	14
RFA_00664	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	990	0	0	0	0	14
RFA_00667	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	990	0	0	0	0	14
RFA_00668	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	990	0	0	0	0	14
RFA_00672	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	903	0	0	0	0	13
RFA_00673	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	1128	0	0	0	0	14
RFA_00674	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	1128	0	0	0	0	14
RFA_00675	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	990	0	0	0	0	14
RFA_00677	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	990	0	0	0	0	14
RFA_00678	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	946	0	0	0	0	14
RFA_00680	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	1128	0	0	0	0	14
RFA_00704	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	990	0	0	0	0	14
RFA_00707	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	1035	0	0	0	0	14
RFA_00715	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	946	0	0	0	0	14
RFA_00717	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	903	0	0	0	0	14
RFA_00730	s2m links to Rfam database...	0.69	0.67	0.73	8	892	4	1	2	1	4
RFA_00731	s2m links to Rfam database...	1.00	1.00	1.00	12	891	1	0	0	1	0
RFA_00733	s2m links to Rfam database...	1.00	1.00	1.00	12	891	1	0	0	1	0
RFA_00734	s2m links to Rfam database...	0.78	0.75	0.82	9	892	3	0	2	1	3
RFA_00736	s2m links to Rfam database...	0.69	0.67	0.73	8	892	4	1	2	1	4
RFA_00737	s2m links to Rfam database...	0.73	0.67	0.80	8	893	3	0	2	1	4
RFA_00745	s2m links to Rfam database...	0.69	0.67	0.73	8	935	4	1	2	1	4
RFA_00749	s2m links to Rfam database...	0.69	0.67	0.73	8	892	4	1	2	1	4
RFA_00758	s2m links to Rfam database...	0.63	0.58	0.70	7	893	3	1	2	0	5
RFA_00762	s2m links to Rfam database...	0.69	0.67	0.73	8	892	3	0	3	0	4
RFA_00763	s2m links to Rfam database...	1.00	1.00	1.00	12	891	0	0	0	0	0
RFA_00764	s2m links to Rfam database...	0.69	0.67	0.73	8	892	4	1	2	1	4
RFA_00765	s2m links to Rfam database...	0.91	0.83	1.00	10	893	1	0	0	1	2
RFA_00786	Gammaretro_CES links to Rfam database...	0.64	0.66	0.64	21	5017	12	2	10	0	11
RFA_00791	Gammaretro_CES links to Rfam database...	0.89	0.84	0.93	27	5122	3	0	2	1	5
RFA_00792	Gammaretro_CES links to Rfam database...	0.94	0.94	0.94	30	5018	4	0	2	2	2
RFA_00801	Gammaretro_CES links to Rfam database...	0.81	0.78	0.83	25	5020	6	0	5	1	7
SPR_00007	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00009	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	0	0	0	0	0
SPR_00010	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00012	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	0	0	0	0	0
SPR_00013	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	0	0	0	0	0
SPR_00016	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00017	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00025	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	1	0	0	1	0
SPR_00026	tRNA links to Rfam database...	0.73	0.76	0.70	16	2903	7	0	7	0	5
SPR_00027	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	1	0	0	1	0
SPR_00036	tRNA links to Rfam database...	1.00	1.00	1.00	20	2755	1	0	0	1	0
SPR_00045	tRNA links to Rfam database...	0.93	0.91	0.95	20	2829	1	0	1	0	2
SPR_00064	tRNA links to Rfam database...	0.65	0.43	1.00	9	2841	0	0	0	0	12
SPR_00065	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00066	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00068	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00070	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00074	tRNA links to Rfam database...	0.97	0.95	1.00	19	2831	1	0	0	1	1
SPR_00079	tRNA links to Rfam database...	1.00	1.00	1.00	19	2466	0	0	0	0	0
SPR_00086	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00087	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	0	0	0	0	0
SPR_00088	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	0	0	0	0	0
SPR_00089	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	0	0	0	0	0
SPR_00090	tRNA links to Rfam database...	0.85	0.85	0.85	17	2830	3	0	3	0	3
SPR_00091	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	0	0	0	0	0
SPR_00095	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00111	tRNA links to Rfam database...	1.00	1.00	1.00	21	2680	0	0	0	0	0
SPR_00112	tRNA links to Rfam database...	1.00	1.00	1.00	21	2680	1	0	0	1	0
SPR_00115	tRNA links to Rfam database...	1.00	1.00	1.00	21	2680	0	0	0	0	0
SPR_00117	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	2	0	0	2	0
SPR_00139	tRNA links to Rfam database...	0.98	0.95	1.00	20	2906	1	0	0	1	1
SPR_00153	tRNA links to Rfam database...	0.98	0.95	1.00	20	2906	0	0	0	0	1
SPR_00155	tRNA links to Rfam database...	0.98	0.95	1.00	20	2906	0	0	0	0	1
SPR_00156	tRNA links to Rfam database...	0.98	0.95	1.00	20	2906	0	0	0	0	1
SPR_00176	tRNA links to Rfam database...	0.95	0.90	1.00	18	2832	0	0	0	0	2
SPR_00177	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00178	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00191	tRNA links to Rfam database...	0.95	0.95	0.95	20	2829	1	0	1	0	1
SPR_00200	tRNA links to Rfam database...	0.81	0.81	0.81	17	2829	4	0	4	0	4
SPR_00224	tRNA links to Rfam database...	1.00	1.00	1.00	20	3721	5	0	0	5	0
SPR_00271	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00273	tRNA links to Rfam database...	0.76	0.76	0.76	16	2829	5	0	5	0	5
SPR_00276	tRNA links to Rfam database...	0.98	0.95	1.00	20	2906	0	0	0	0	1
SPR_00277	tRNA links to Rfam database...	0.98	0.95	1.00	20	2906	0	0	0	0	1
SPR_00294	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00295	tRNA links to Rfam database...	0.98	0.95	1.00	20	2755	1	0	0	1	1
SPR_00314	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	2	0	0	2	0
SPR_00315	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	1	0	0	1	0
SPR_00317	tRNA links to Rfam database...	0.76	0.80	0.73	16	2904	6	1	5	0	4
SPR_00318	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	2	0	0	2	0
SPR_00321	tRNA links to Rfam database...	1.00	1.00	1.00	21	2982	0	0	0	0	0
SPR_00333	tRNA links to Rfam database...	0.98	0.95	1.00	20	2755	0	0	0	0	1
SPR_00352	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00353	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00357	tRNA links to Rfam database...	0.98	0.95	1.00	20	2906	0	0	0	0	1
SPR_00358	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00370	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	0	0	0	0	0
SPR_00386	tRNA links to Rfam database...	0.75	0.75	0.75	15	4166	9	0	5	4	5
SPR_00414	tRNA links to Rfam database...	0.59	0.62	0.57	13	3547	10	7	3	0	8
SPR_00415	tRNA links to Rfam database...	0.95	0.90	1.00	19	3551	4	0	0	4	2
SPR_00417	tRNA links to Rfam database...	0.98	0.95	1.00	21	3549	4	0	0	4	1
SPR_00418	tRNA links to Rfam database...	0.58	0.55	0.63	12	3551	11	0	7	4	10
SPR_00434	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00435	tRNA links to Rfam database...	0.76	0.76	0.76	16	2829	5	0	5	0	5
SPR_00436	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	1	0	0	1	1
SPR_00437	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	1	0	0	1	0
SPR_00438	tRNA links to Rfam database...	0.98	0.95	1.00	20	2755	0	0	0	0	1
SPR_00452	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00455	tRNA links to Rfam database...	0.73	0.76	0.70	16	2827	7	0	7	0	5
SPR_00456	tRNA links to Rfam database...	0.73	0.76	0.70	16	2827	7	1	6	0	5
SPR_00476	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	0	0	0	0	0
SPR_00479	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00482	tRNA links to Rfam database...	0.48	0.33	0.70	7	2691	3	0	3	0	14
SPR_00483	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00487	tRNA links to Rfam database...	0.70	0.68	0.71	15	2680	6	0	6	0	7
SPR_00493	tRNA links to Rfam database...	0.70	0.68	0.71	15	2754	6	2	4	0	7
SPR_00496	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	0	0	0	0	0
SPR_00497	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	0	0	0	0	0
SPR_00502	tRNA links to Rfam database...	0.83	0.81	0.85	17	2906	3	0	3	0	4
SPR_00504	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	0	0	0	0	0
SPR_00505	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00506	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00509	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00512	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00513	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00518	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00548	tRNA links to Rfam database...	0.84	0.86	0.82	18	3381	4	0	4	0	3
SPR_00557	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00561	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00590	tRNA links to Rfam database...	1.00	1.00	1.00	20	2983	0	0	0	0	0
SPR_00593	tRNA links to Rfam database...	0.95	0.89	1.00	17	2758	0	0	0	0	2
SPR_00595	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	0	0	0	0	0
SPR_00598	tRNA links to Rfam database...	0.58	0.57	0.60	12	2983	9	0	8	1	9
SPR_00610	tRNA links to Rfam database...	0.81	0.81	0.81	17	2535	5	0	4	1	4
SPR_00620	tRNA links to Rfam database...	0.57	0.57	0.57	12	2982	10	3	6	1	9
SPR_00721	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00722	tRNA links to Rfam database...	0.80	0.80	0.80	16	2906	4	0	4	0	4
SPR_00758	tRNA links to Rfam database...	0.74	0.76	0.73	16	2981	6	0	6	0	5
SPR_00760	tRNA links to Rfam database...	1.00	1.00	1.00	21	3549	0	0	0	0	0
SPR_00777	tRNA links to Rfam database...	0.92	0.90	0.95	18	2609	2	0	1	1	2
SPR_00867	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00868	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00943	tRNA links to Rfam database...	1.00	1.00	1.00	20	2536	0	0	0	0	0
SPR_00957	tRNA links to Rfam database...	0.79	0.81	0.77	17	2981	6	0	5	1	4
SPR_01040	tRNA links to Rfam database...	0.95	0.95	0.95	20	2754	2	0	1	1	1
SPR_01088	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_01095	tRNA links to Rfam database...	0.76	0.76	0.76	16	2829	6	0	5	1	5
SPR_01106	tRNA links to Rfam database...	0.98	0.95	1.00	20	2536	2	0	0	2	1
SPR_01117	tRNA links to Rfam database...	0.76	0.76	0.76	16	2982	6	0	5	1	5
SPR_01157	tRNA links to Rfam database...	0.83	0.81	0.85	17	2755	4	0	3	1	4
SRP_00006	Metazoa_SRP links to Rfam database...	0.86	0.85	0.88	86	45655	15	2	10	3	15
SRP_00020	Bacteria_small_SRP links to Rfam database...	0.29	0.15	0.56	5	5556	4	0	4	0	28
SRP_00024	Bacteria_large_SRP links to Rfam database...	0.51	0.34	0.77	30	37636	9	0	9	0	57
SRP_00026	Bacteria_large_SRP links to Rfam database...	0.71	0.66	0.76	58	36780	24	0	18	6	30
SRP_00027	Bacteria_large_SRP links to Rfam database...	0.70	0.53	0.94	46	37079	3	0	3	0	41
SRP_00030	Bacteria_large_SRP links to Rfam database...	0.81	0.83	0.79	73	36764	19	3	16	0	15
SRP_00031	Bacteria_large_SRP links to Rfam database...	0.81	0.78	0.84	69	36233	16	0	13	3	20
SRP_00037	Bacteria_large_SRP links to Rfam database...	0.49	0.34	0.70	30	36542	13	0	13	0	57
SRP_00038	Bacteria_small_SRP links to Rfam database...	0.89	0.85	0.93	28	5020	2	0	2	0	5
SRP_00042	Bacteria_small_SRP links to Rfam database...	0.36	0.24	0.55	6	3994	6	1	4	1	19
SRP_00046	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	4753	0	0	0	0	32
SRP_00050	Metazoa_SRP links to Rfam database...	0.70	0.65	0.75	64	44765	22	1	20	1	35
SRP_00051	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	5450	10	0	10	0	30
SRP_00054	Bacteria_small_SRP links to Rfam database...	0.47	0.22	1.00	7	5558	0	0	0	0	25
SRP_00057	Bacteria_small_SRP links to Rfam database...	0.34	0.20	0.58	7	6316	5	1	4	0	28
SRP_00058	Bacteria_small_SRP links to Rfam database...	0.73	0.68	0.79	23	5749	6	1	5	0	11
SRP_00066	Metazoa_SRP links to Rfam database...	0.78	0.76	0.81	76	45357	18	1	17	0	24
SRP_00072	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6318	10	0	10	0	29
SRP_00074	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6543	12	0	12	0	29
SRP_00077	Bacteria_small_SRP links to Rfam database...	0.57	0.32	1.00	12	6658	0	0	0	0	25
SRP_00081	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	5555	10	2	8	0	31
SRP_00084	Bacteria_small_SRP links to Rfam database...	0.36	0.21	0.64	7	5449	4	0	4	0	27
SRP_00088	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	34151	40	7	33	0	89
SRP_00089	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	35748	30	1	29	0	90
SRP_00090	Bacteria_large_SRP links to Rfam database...	0.53	0.36	0.78	32	35470	9	0	9	0	58
SRP_00094	Bacteria_small_SRP links to Rfam database...	0.73	0.75	0.72	18	4070	7	1	6	0	6
SRP_00095	Bacteria_small_SRP links to Rfam database...	0.30	0.28	0.33	7	3984	14	4	10	0	18
SRP_00098	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6430	11	1	10	0	37
SRP_00103	Metazoa_SRP links to Rfam database...	0.77	0.71	0.84	72	45365	14	1	13	0	30
SRP_00107	Bacteria_small_SRP links to Rfam database...	0.27	0.32	0.24	6	3630	21	4	15	2	13
SRP_00121	Bacteria_small_SRP links to Rfam database...	0.60	0.40	0.91	10	4267	1	0	1	0	15
SRP_00128	Bacteria_small_SRP links to Rfam database...	0.14	0.08	0.25	3	6774	9	0	9	0	33
SRP_00132	Bacteria_small_SRP links to Rfam database...	0.28	0.17	0.45	5	4840	7	0	6	1	24
SRP_00134	Bacteria_large_SRP links to Rfam database...	0.51	0.55	0.48	16	5962	23	3	14	6	13
SRP_00141	Bacteria_small_SRP links to Rfam database...	0.65	0.51	0.84	21	6303	4	1	3	0	20
SRP_00152	Plant_SRP links to Rfam database...	0.81	0.74	0.89	76	45668	12	0	9	3	27
SRP_00161	Bacteria_small_SRP links to Rfam database...	0.71	0.50	1.00	11	2839	0	0	0	0	11
SRP_00162	Bacteria_small_SRP links to Rfam database...	0.87	0.87	0.87	20	2903	4	0	3	1	3
SRP_00163	Bacteria_small_SRP links to Rfam database...	0.52	0.27	1.00	7	3479	0	0	0	0	19
SRP_00164	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6892	11	2	9	0	35
SRP_00170	Bacteria_small_SRP links to Rfam database...	0.70	0.56	0.88	14	4079	3	1	1	1	11
SRP_00173	Bacteria_large_SRP links to Rfam database...	0.61	0.43	0.87	39	38181	8	0	6	2	51
SRP_00174	Bacteria_large_SRP links to Rfam database...	0.76	0.76	0.77	65	38697	20	4	15	1	21
SRP_00178	Plant_SRP links to Rfam database...	0.83	0.75	0.93	76	45671	8	0	6	2	26
SRP_00179	Plant_SRP links to Rfam database...	0.76	0.66	0.88	69	45978	12	1	8	3	36
SRP_00184	Plant_SRP links to Rfam database...	0.76	0.68	0.85	68	45976	14	0	12	2	32
SRP_00194	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	3240	0	0	0	0	21
SRP_00209	Bacteria_small_SRP links to Rfam database...	0.20	0.19	0.23	5	4634	17	4	13	0	22
SRP_00213	Bacteria_small_SRP links to Rfam database...	0.54	0.36	0.82	9	4175	2	0	2	0	16
SRP_00215	Bacteria_small_SRP links to Rfam database...	0.53	0.32	0.89	8	3231	1	0	1	0	17
SRP_00227	Bacteria_small_SRP links to Rfam database...	0.94	0.94	0.94	29	5120	2	1	1	0	2
SRP_00228	Metazoa_SRP links to Rfam database...	0.76	0.69	0.84	66	45372	19	1	12	6	29
SRP_00231	Bacteria_small_SRP links to Rfam database...	0.46	0.26	0.82	9	5449	2	0	2	0	25
SRP_00234	Bacteria_large_SRP links to Rfam database...	0.80	0.78	0.83	67	36234	20	1	13	6	19
SRP_00243	Bacteria_small_SRP links to Rfam database...	0.47	0.23	1.00	7	5144	0	0	0	0	24
SRP_00244	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6892	11	1	10	0	39
SRP_00250	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6786	0	0	0	0	36
SRP_00251	Bacteria_small_SRP links to Rfam database...	0.77	0.67	0.89	24	6994	3	1	2	0	12
SRP_00266	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	4656	0	0	0	0	29
SRP_00268	Bacteria_small_SRP links to Rfam database...	0.93	0.93	0.93	25	4159	2	1	1	0	2
SRP_00269	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	5043	7	1	6	0	33
SRP_00270	Bacteria_small_SRP links to Rfam database...	0.80	0.65	1.00	20	4636	0	0	0	0	11
SRP_00271	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	3240	0	0	0	0	24
SRP_00273	Bacteria_small_SRP links to Rfam database...	0.55	0.30	1.00	12	6774	0	0	0	0	28
SRP_00274	Bacteria_small_SRP links to Rfam database...	0.95	0.95	0.95	36	6865	2	1	1	0	2
SRP_00303	Bacteria_small_SRP links to Rfam database...	0.31	0.09	1.00	3	6667	0	0	0	0	29
SRP_00308	Bacteria_large_SRP links to Rfam database...	0.65	0.48	0.89	42	36268	5	0	5	0	46
SRP_00310	Bacteria_small_SRP links to Rfam database...	0.84	0.83	0.86	19	2904	4	0	3	1	4
SRP_00312	Bacteria_small_SRP links to Rfam database...	0.77	0.67	0.90	18	4166	2	1	1	0	9
SRP_00317	Metazoa_SRP links to Rfam database...	0.84	0.80	0.90	78	45063	14	1	8	5	20
SRP_00318	Bacteria_small_SRP links to Rfam database...	0.62	0.39	1.00	9	2994	0	0	0	0	14
SRP_00325	Bacteria_small_SRP links to Rfam database...	0.70	0.58	0.86	19	4349	3	0	3	0	14
SRP_00333	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	5151	0	0	0	0	34
SRP_00335	Bacteria_large_SRP links to Rfam database...	0.29	0.31	0.28	12	35202	34	17	14	3	27
SRP_00338	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	5460	0	0	0	0	36
SRP_00341	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	4741	12	3	9	0	31
SRP_00342	Bacteria_small_SRP links to Rfam database...	0.46	0.28	0.78	7	3996	4	0	2	2	18
SRP_00347	Metazoa_SRP links to Rfam database...	0.74	0.70	0.79	67	46580	20	4	14	2	29
SRP_00350	Bacteria_small_SRP links to Rfam database...	0.39	0.26	0.58	7	3904	5	0	5	0	20
SRP_00356	Bacteria_small_SRP links to Rfam database...	0.58	0.37	0.92	11	5038	1	0	1	0	19
SRP_00357	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	5356	0	0	0	0	36
SRP_00358	Bacteria_small_SRP links to Rfam database...	0.32	0.14	0.71	5	6321	2	1	1	0	30
SRP_00367	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6775	11	1	10	0	35
SRP_00368	Metazoa_SRP links to Rfam database...	0.36	0.33	0.40	32	43875	49	6	43	0	66
SRP_00369	Bacteria_small_SRP links to Rfam database...	0.58	0.34	1.00	12	5766	0	0	0	0	23
SRP_00383	Bacteria_small_SRP links to Rfam database...	0.54	0.29	1.00	7	3233	0	0	0	0	17
TMR_00017	tmRNA links to Rfam database...	0.59	0.56	0.62	57	67069	39	8	27	4	45
TMR_00018	tmRNA links to Rfam database...	0.59	0.54	0.65	50	64543	31	7	20	4	42
TMR_00038	tmRNA links to Rfam database...	0.73	0.66	0.79	73	71161	24	1	18	5	37
TMR_00042	tmRNA links to Rfam database...	0.61	0.57	0.65	56	62749	34	7	23	4	42
TMR_00046	tmRNA links to Rfam database...	0.65	0.63	0.67	60	62746	35	9	20	6	36
TMR_00048	tmRNA links to Rfam database...	0.59	0.55	0.63	52	64898	38	6	24	8	43
TMR_00080	tmRNA links to Rfam database...	0.51	0.46	0.56	44	70422	34	10	24	0	52
TMR_00082	tmRNA links to Rfam database...	0.65	0.59	0.71	57	67816	30	7	16	7	39
TMR_00123	tmRNA links to Rfam database...	0.64	0.59	0.68	60	66342	34	4	24	6	41
TMR_00137	tmRNA links to Rfam database...	0.33	0.28	0.38	25	61009	44	9	32	3	64
TMR_00142	tmRNA links to Rfam database...	0.62	0.64	0.61	65	70769	49	12	30	7	37
TMR_00207	tmRNA links to Rfam database...	0.40	0.35	0.45	36	72310	49	6	38	5	67
TMR_00257	tmRNA links to Rfam database...	0.68	0.61	0.76	60	67082	27	4	15	8	38
TMR_00271	tmRNA links to Rfam database...	0.64	0.56	0.74	51	64192	20	6	12	2	40
TMR_00366	tmRNA links to Rfam database...	0.64	0.60	0.67	60	67807	40	12	17	11	40
TMR_00378	tmRNA links to Rfam database...	0.67	0.63	0.71	61	67810	38	5	20	13	36
TMR_00399	tmRNA links to Rfam database...	0.48	0.45	0.52	42	64899	46	9	30	7	52
TMR_00404	tmRNA links to Rfam database...	0.59	0.59	0.60	54	67438	49	12	24	13	38
TMR_00427	tmRNA links to Rfam database...	0.53	0.41	0.69	40	67470	22	7	11	4	57
TMR_00443	tmRNA links to Rfam database...	0.67	0.59	0.77	61	67082	22	4	14	4	43
TMR_00451	tmRNA links to Rfam database...	0.52	0.45	0.60	40	63479	31	7	20	4	49
TMR_00458	tmRNA links to Rfam database...	0.70	0.63	0.77	59	63469	21	4	14	3	34
TMR_00469	tmRNA links to Rfam database...	0.75	0.73	0.78	73	64526	30	7	14	9	27
TMR_00472	tmRNA links to Rfam database...	0.76	0.73	0.80	71	64531	23	7	11	5	26
TMR_00519	tmRNA links to Rfam database...	0.60	0.57	0.64	54	63106	34	12	18	4	41
TMR_00520	tmRNA links to Rfam database...	0.67	0.62	0.73	61	63106	31	4	19	8	38
TMR_00522	tmRNA links to Rfam database...	0.53	0.47	0.60	46	63113	36	9	22	5	51
TMR_00528	tmRNA links to Rfam database...	0.51	0.45	0.58	44	63114	37	10	22	5	53
TMR_00568	tmRNA links to Rfam database...	0.62	0.59	0.65	58	60637	40	8	23	9	41
TMR_00571	tmRNA links to Rfam database...	0.69	0.65	0.73	64	60638	34	10	14	10	35
TMR_00580	tmRNA links to Rfam database...	0.62	0.61	0.63	61	60629	46	10	26	10	39
TMR_00584	tmRNA links to Rfam database...	0.65	0.61	0.69	59	60989	36	6	21	9	38
TMR_00586	tmRNA links to Rfam database...	0.60	0.59	0.61	57	60982	43	11	25	7	40
TMR_00616	tmRNA links to Rfam database...	0.65	0.63	0.68	62	67070	35	7	22	6	37
TMR_00699	tmRNA links to Rfam database...	0.69	0.60	0.80	61	67085	16	2	13	1	41
TMR_00702	tmRNA links to Rfam database...	0.63	0.54	0.73	54	67087	26	7	13	6	46

^top

Performance of McQFold - scored lower in this pairwise comparison

1. Total counts & total scores for McQFold

Total Base Pair Counts
Total TP	14266
Total TN	14073885
Total FP	14910
Total FP CONTRA	1761
Total FP INCONS	12018
Total FP COMP	1131
Total FN	16390

Total Scores
MCC	0.485
Average MCC ± 95% Confidence Intervals	0.562 ± 0.023
Sensitivity	0.465
Positive Predictive Value	0.509
Nr of predictions	534

^top

2. Individual counts for McQFold [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00005	RNaseP_bact_a links to Rfam database...	0.52	0.46	0.59	54	57878	40	0	38	2	63
ASE_00006	RNaseP_bact_a links to Rfam database...	0.35	0.34	0.36	32	47498	60	6	50	4	61
ASE_00007	RNaseP_bact_a links to Rfam database...	0.42	0.39	0.46	43	59591	55	2	49	4	67
ASE_00012	RNaseP_bact_a links to Rfam database...	0.42	0.39	0.46	48	73816	61	3	53	5	75
ASE_00018	RNaseP_bact_a links to Rfam database...	0.54	0.51	0.57	68	80482	52	2	49	1	66
ASE_00020	RNaseP_bact_a links to Rfam database...	0.47	0.47	0.48	59	73797	64	9	55	0	67
ASE_00021	RNaseP_bact_a links to Rfam database...	0.60	0.54	0.67	86	104068	47	2	40	5	74
ASE_00035	RNaseP_bact_a links to Rfam database...	0.29	0.27	0.32	32	70401	71	9	58	4	86
ASE_00037	RNaseP_bact_a links to Rfam database...	0.42	0.38	0.46	42	59248	50	5	45	0	68
ASE_00038	RNaseP_bact_a links to Rfam database...	0.41	0.39	0.43	39	53538	53	3	48	2	62
ASE_00040	RNaseP_bact_a links to Rfam database...	0.27	0.26	0.29	34	78886	88	9	74	5	99
ASE_00041	RNaseP_bact_a links to Rfam database...	0.46	0.43	0.51	46	57539	48	6	39	3	62
ASE_00042	RNaseP_bact_a links to Rfam database...	0.56	0.53	0.60	77	89972	53	4	47	2	68
ASE_00044	RNaseP_bact_a links to Rfam database...	0.78	0.76	0.80	80	54515	25	4	16	5	25
ASE_00045	RNaseP_bact_b links to Rfam database...	0.30	0.29	0.31	23	47203	59	7	45	7	57
ASE_00064	RNaseP_bact_a links to Rfam database...	0.50	0.49	0.51	44	45364	46	5	38	3	45
ASE_00068	RNaseP_bact_a links to Rfam database...	0.70	0.60	0.82	51	37613	16	2	9	5	34
ASE_00074	RNaseP_bact_a links to Rfam database...	0.42	0.40	0.44	48	67786	62	3	59	0	71
ASE_00075	RNaseP_bact_a links to Rfam database...	0.51	0.46	0.57	74	108681	62	4	52	6	88
ASE_00077	RNaseP_bact_a links to Rfam database...	0.42	0.40	0.45	34	45075	47	5	36	6	52
ASE_00078	RNaseP_bact_a links to Rfam database...	0.55	0.52	0.58	43	42997	38	2	29	7	40
ASE_00080	RNaseP_bact_a links to Rfam database...	0.32	0.30	0.35	37	71524	71	6	64	1	86
ASE_00081	RNaseP_bact_a links to Rfam database...	0.31	0.29	0.34	28	49688	56	5	49	2	69
ASE_00082	RNaseP_bact_a links to Rfam database...	0.38	0.36	0.40	42	70396	73	2	60	11	74
ASE_00083	RNaseP_bact_a links to Rfam database...	0.25	0.25	0.26	27	62379	75	6	69	0	83
ASE_00084	RNaseP_bact_a links to Rfam database...	0.60	0.57	0.64	56	53540	36	2	30	4	43
ASE_00087	RNaseP_bact_a links to Rfam database...	0.49	0.42	0.57	61	88303	52	2	44	6	83
ASE_00090	RNaseP_bact_a links to Rfam database...	0.52	0.52	0.52	53	55510	52	6	42	4	48
ASE_00092	RNaseP_bact_a links to Rfam database...	0.46	0.44	0.49	50	63444	55	6	46	3	63
ASE_00099	RNaseP_bact_a links to Rfam database...	0.58	0.56	0.61	67	64510	44	4	39	1	53
ASE_00104	RNaseP_bact_a links to Rfam database...	0.53	0.52	0.55	62	64148	52	8	43	1	57
ASE_00105	RNaseP_bact_a links to Rfam database...	0.35	0.32	0.38	36	64165	64	2	58	4	75
ASE_00107	RNaseP_bact_a links to Rfam database...	0.56	0.53	0.59	67	73039	48	1	46	1	60
ASE_00114	RNaseP_bact_b links to Rfam database...	0.26	0.26	0.27	20	45376	63	10	45	8	57
ASE_00115	RNaseP_bact_a links to Rfam database...	0.61	0.57	0.64	58	54525	40	4	28	8	43
ASE_00118	RNaseP_bact_a links to Rfam database...	0.39	0.37	0.40	38	60632	60	3	53	4	64
ASE_00119	RNaseP_bact_a links to Rfam database...	0.83	0.81	0.86	87	62734	14	2	12	0	21
ASE_00123	RNaseP_bact_a links to Rfam database...	0.43	0.40	0.47	34	38430	45	0	39	6	51
ASE_00126	RNaseP_bact_a links to Rfam database...	0.54	0.51	0.57	42	40396	33	3	29	1	40
ASE_00128	RNaseP_bact_a links to Rfam database...	0.43	0.39	0.48	39	53219	47	3	40	4	61
ASE_00129	RNaseP_bact_a links to Rfam database...	0.61	0.59	0.62	66	62729	42	3	37	2	45
ASE_00131	RNaseP_bact_a links to Rfam database...	0.37	0.33	0.42	28	39274	43	3	35	5	57
ASE_00134	RNaseP_bact_a links to Rfam database...	0.33	0.32	0.35	30	50317	57	7	49	1	65
ASE_00135	RNaseP_bact_a links to Rfam database...	0.30	0.28	0.31	31	63090	74	3	66	5	78
ASE_00136	RNaseP_bact_a links to Rfam database...	0.67	0.64	0.71	59	48122	32	1	23	8	33
ASE_00137	RNaseP_bact_a links to Rfam database...	0.53	0.52	0.55	51	48423	45	5	37	3	47
ASE_00138	RNaseP_bact_a links to Rfam database...	0.56	0.51	0.63	41	40405	25	4	20	1	40
ASE_00140	RNaseP_bact_a links to Rfam database...	0.53	0.49	0.57	61	70769	47	7	39	1	64
ASE_00142	RNaseP_bact_a links to Rfam database...	0.59	0.57	0.61	69	67048	47	5	39	3	53
ASE_00146	RNaseP_bact_a links to Rfam database...	0.53	0.49	0.58	61	70770	48	1	44	3	63
ASE_00153	RNaseP_nuc links to Rfam database...	0.51	0.53	0.49	39	57550	72	9	32	31	34
ASE_00161	RNaseP_bact_b links to Rfam database...	0.29	0.29	0.29	25	53543	63	8	52	3	62
ASE_00163	RNaseP_bact_a links to Rfam database...	0.41	0.40	0.42	37	53213	57	4	47	6	56
ASE_00165	RNaseP_bact_a links to Rfam database...	0.40	0.39	0.42	39	52882	56	6	48	2	62
ASE_00170	RNaseP_bact_a links to Rfam database...	0.72	0.69	0.74	64	48742	24	2	20	2	29
ASE_00171	RNaseP_bact_a links to Rfam database...	0.52	0.50	0.55	47	48431	38	3	35	0	47
ASE_00172	RNaseP_bact_a links to Rfam database...	0.50	0.47	0.54	50	58903	50	5	38	7	56
ASE_00174	RNaseP_bact_a links to Rfam database...	0.44	0.41	0.46	45	60978	53	5	47	1	64
ASE_00175	RNaseP_bact_a links to Rfam database...	0.22	0.21	0.23	23	59931	80	5	72	3	84
ASE_00179	RNaseP_bact_a links to Rfam database...	0.54	0.52	0.56	44	44174	36	8	27	1	40
ASE_00180	RNaseP_bact_a links to Rfam database...	0.42	0.41	0.42	41	51263	60	4	52	4	59
ASE_00181	RNaseP_bact_a links to Rfam database...	0.53	0.54	0.53	57	57522	51	4	47	0	49
ASE_00182	RNaseP_bact_a links to Rfam database...	0.45	0.40	0.50	55	84145	57	2	53	2	81
ASE_00183	RNaseP_bact_a links to Rfam database...	0.67	0.63	0.71	71	61325	36	0	29	7	42
ASE_00184	RNaseP_bact_a links to Rfam database...	0.52	0.51	0.54	52	54519	46	8	36	2	50
ASE_00185	RNaseP_bact_a links to Rfam database...	0.29	0.28	0.31	36	73419	81	14	67	0	92
ASE_00190	RNaseP_bact_b links to Rfam database...	0.55	0.52	0.57	47	45369	40	2	33	5	43
ASE_00197	RNaseP_bact_a links to Rfam database...	0.42	0.39	0.45	56	89129	76	1	67	8	89
ASE_00198	RNaseP_bact_a links to Rfam database...	0.50	0.46	0.55	47	52564	44	2	37	5	55
ASE_00203	RNaseP_bact_a links to Rfam database...	0.54	0.55	0.53	53	46565	51	4	43	4	43
ASE_00212	RNaseP_bact_a links to Rfam database...	0.43	0.40	0.46	59	93832	80	3	67	10	89
ASE_00214	RNaseP_bact_a links to Rfam database...	0.66	0.63	0.70	65	56187	35	2	26	7	38
ASE_00215	RNaseP_bact_a links to Rfam database...	0.30	0.28	0.32	28	48429	60	7	52	1	71
ASE_00216	RNaseP_bact_a links to Rfam database...	0.65	0.62	0.67	51	39264	26	7	18	1	31
ASE_00217	RNaseP_bact_a links to Rfam database...	0.21	0.19	0.25	17	40401	54	6	46	2	73
ASE_00221	RNaseP_bact_a links to Rfam database...	0.32	0.29	0.35	34	64522	65	3	61	1	83
ASE_00228	RNaseP_bact_a links to Rfam database...	0.38	0.37	0.40	32	46890	50	11	38	1	54
ASE_00229	RNaseP_bact_a links to Rfam database...	0.52	0.53	0.52	46	42398	44	6	36	2	41
ASE_00231	RNaseP_bact_a links to Rfam database...	0.63	0.60	0.67	58	47808	33	4	25	4	38
ASE_00232	RNaseP_bact_a links to Rfam database...	0.70	0.70	0.69	59	38418	29	8	18	3	25
ASE_00234	RNaseP_bact_a links to Rfam database...	0.31	0.28	0.34	36	75360	71	9	61	1	93
ASE_00238	RNaseP_bact_a links to Rfam database...	0.47	0.44	0.51	50	64163	50	2	46	2	64
ASE_00241	RNaseP_bact_a links to Rfam database...	0.20	0.18	0.23	16	43886	55	3	51	1	71
ASE_00242	RNaseP_bact_a links to Rfam database...	0.63	0.59	0.67	66	60976	34	3	30	1	46
ASE_00254	RNaseP_bact_a links to Rfam database...	0.38	0.37	0.40	30	36781	48	3	42	3	52
ASE_00257	RNaseP_bact_a links to Rfam database...	0.50	0.48	0.53	47	50951	49	3	39	7	50
ASE_00263	RNaseP_bact_a links to Rfam database...	0.62	0.59	0.65	71	70390	40	4	35	1	49
ASE_00267	RNaseP_bact_a links to Rfam database...	0.21	0.19	0.23	17	45075	63	8	50	5	71
ASE_00270	RNaseP_bact_a links to Rfam database...	0.45	0.42	0.49	54	72279	57	5	52	0	74
ASE_00274	RNaseP_bact_a links to Rfam database...	0.49	0.44	0.55	45	55529	38	5	32	1	58
ASE_00277	RNaseP_bact_a links to Rfam database...	0.39	0.37	0.40	34	48121	50	17	33	0	57
ASE_00279	RNaseP_bact_a links to Rfam database...	0.16	0.15	0.17	15	53215	73	2	69	2	86
ASE_00280	RNaseP_bact_a links to Rfam database...	0.40	0.40	0.41	39	51908	60	9	47	4	59
ASE_00281	RNaseP_bact_a links to Rfam database...	0.74	0.66	0.84	58	44482	17	0	11	6	30
ASE_00282	RNaseP_bact_a links to Rfam database...	0.55	0.50	0.60	64	77708	50	7	36	7	63
ASE_00283	RNaseP_bact_a links to Rfam database...	0.54	0.52	0.55	56	61675	47	3	42	2	51
ASE_00284	RNaseP_bact_a links to Rfam database...	0.21	0.20	0.22	22	58211	82	8	70	4	86
ASE_00285	RNaseP_bact_a links to Rfam database...	0.54	0.52	0.57	63	68895	53	2	46	5	59
ASE_00286	RNaseP_bact_a links to Rfam database...	0.38	0.35	0.42	32	46589	45	4	40	1	60
ASE_00287	RNaseP_bact_a links to Rfam database...	0.28	0.27	0.30	28	54852	67	9	57	1	75
ASE_00292	RNaseP_bact_a links to Rfam database...	0.42	0.38	0.48	52	81701	58	3	54	1	86
ASE_00294	RNaseP_bact_a links to Rfam database...	0.43	0.41	0.45	70	114326	87	5	80	2	101
ASE_00296	RNaseP_bact_a links to Rfam database...	0.15	0.14	0.17	21	91680	105	6	99	0	124
ASE_00297	RNaseP_bact_a links to Rfam database...	0.34	0.33	0.36	32	52887	59	8	48	3	66
ASE_00298	RNaseP_bact_a links to Rfam database...	0.21	0.21	0.22	24	67418	87	14	72	1	89
ASE_00305	RNaseP_bact_b links to Rfam database...	0.64	0.67	0.62	57	54523	44	7	28	9	28
ASE_00321	RNaseP_bact_b links to Rfam database...	0.73	0.73	0.74	64	54528	29	3	20	6	24
ASE_00328	RNaseP_bact_b links to Rfam database...	0.61	0.60	0.63	67	72665	47	2	37	8	45
ASE_00332	RNaseP_bact_a links to Rfam database...	0.41	0.40	0.43	55	81683	75	3	69	3	83
ASE_00340	RNaseP_bact_a links to Rfam database...	0.34	0.35	0.33	30	45965	64	10	51	3	55
ASE_00342	RNaseP_bact_a links to Rfam database...	0.68	0.63	0.73	73	62381	29	2	25	2	42
ASE_00353	RNaseP_bact_a links to Rfam database...	0.61	0.60	0.62	64	57867	40	2	37	1	43
ASE_00361	RNaseP_bact_a links to Rfam database...	0.43	0.40	0.47	51	75358	59	8	49	2	76
ASE_00362	RNaseP_bact_a links to Rfam database...	0.53	0.53	0.53	48	48114	45	4	39	2	43
ASE_00363	RNaseP_bact_a links to Rfam database...	0.49	0.48	0.51	45	51272	50	5	38	7	49
ASE_00364	RNaseP_bact_a links to Rfam database...	0.55	0.51	0.59	54	54193	39	3	35	1	51
ASE_00366	RNaseP_bact_a links to Rfam database...	0.40	0.40	0.40	39	58555	60	10	49	1	59
ASE_00367	RNaseP_bact_a links to Rfam database...	0.44	0.43	0.45	37	42988	54	2	44	8	49
ASE_00369	RNaseP_bact_a links to Rfam database...	0.57	0.55	0.60	59	55846	42	6	34	2	48
ASE_00370	RNaseP_bact_a links to Rfam database...	0.43	0.40	0.47	34	41832	40	6	33	1	50
ASE_00372	RNaseP_bact_a links to Rfam database...	0.56	0.55	0.58	55	51908	43	7	33	3	45
ASE_00374	RNaseP_bact_a links to Rfam database...	0.56	0.56	0.56	49	44762	39	6	33	0	39
ASE_00376	RNaseP_bact_a links to Rfam database...	0.55	0.51	0.60	54	56863	37	4	32	1	51
ASE_00377	RNaseP_bact_a links to Rfam database...	0.76	0.71	0.81	76	57536	23	2	16	5	31
ASE_00379	RNaseP_bact_a links to Rfam database...	0.46	0.44	0.49	39	45976	42	7	34	1	50
ASE_00382	RNaseP_bact_a links to Rfam database...	0.73	0.68	0.78	57	41832	18	5	11	2	27
ASE_00383	RNaseP_bact_a links to Rfam database...	0.39	0.36	0.43	38	54526	51	3	48	0	67
ASE_00384	RNaseP_bact_a links to Rfam database...	0.32	0.30	0.35	28	48435	62	3	50	9	64
ASE_00386	RNaseP_bact_a links to Rfam database...	0.58	0.56	0.60	54	50313	38	7	29	2	42
ASE_00387	RNaseP_bact_a links to Rfam database...	0.49	0.48	0.50	50	55845	53	5	45	3	54
ASE_00388	RNaseP_bact_a links to Rfam database...	0.51	0.49	0.54	44	45671	48	1	37	10	45
ASE_00390	RNaseP_bact_a links to Rfam database...	0.53	0.51	0.55	43	42117	46	1	34	11	42
ASE_00393	RNaseP_bact_a links to Rfam database...	0.37	0.34	0.41	32	47816	53	2	45	6	61
ASE_00394	RNaseP_bact_a links to Rfam database...	0.57	0.55	0.59	51	46884	41	2	34	5	42
ASE_00395	RNaseP_bact_a links to Rfam database...	0.71	0.67	0.76	56	41542	28	1	17	10	28
ASE_00396	RNaseP_bact_a links to Rfam database...	0.47	0.46	0.48	38	41536	46	8	34	4	45
ASE_00397	RNaseP_bact_a links to Rfam database...	0.51	0.47	0.55	49	54526	41	4	36	1	56
ASE_00398	RNaseP_bact_a links to Rfam database...	0.39	0.38	0.40	39	55847	61	6	53	2	65
ASE_00400	RNaseP_bact_a links to Rfam database...	0.54	0.53	0.54	56	57867	48	7	40	1	50
ASE_00401	RNaseP_bact_a links to Rfam database...	0.54	0.52	0.56	65	76912	53	7	44	2	61
ASE_00402	RNaseP_bact_a links to Rfam database...	0.59	0.55	0.64	47	42412	29	7	20	2	38
ASE_00403	RNaseP_bact_a links to Rfam database...	0.24	0.22	0.27	24	55855	70	4	62	4	83
ASE_00404	RNaseP_bact_a links to Rfam database...	0.17	0.16	0.18	14	42992	70	4	61	5	71
ASE_00406	RNaseP_bact_a links to Rfam database...	0.56	0.54	0.57	51	48739	49	2	36	11	43
ASE_00411	RNaseP_bact_a links to Rfam database...	0.27	0.27	0.27	24	49367	65	7	57	1	65
ASE_00412	RNaseP_bact_a links to Rfam database...	0.26	0.25	0.27	26	58215	71	9	61	1	79
ASE_00413	RNaseP_bact_a links to Rfam database...	0.48	0.48	0.49	39	44471	45	1	40	4	42
ASE_00415	RNaseP_bact_a links to Rfam database...	0.62	0.59	0.65	61	54852	38	5	28	5	42
ASE_00416	RNaseP_bact_a links to Rfam database...	0.52	0.50	0.54	63	77304	57	5	49	3	64
ASE_00419	RNaseP_bact_a links to Rfam database...	0.75	0.71	0.78	73	54853	22	2	18	2	30
ASE_00422	RNaseP_bact_a links to Rfam database...	0.63	0.61	0.65	57	46883	38	3	28	7	37
ASE_00423	RNaseP_bact_a links to Rfam database...	0.36	0.35	0.38	38	56853	62	6	56	0	71
ASE_00427	RNaseP_nuc links to Rfam database...	0.11	0.13	0.09	6	40688	71	32	29	10	40
ASE_00428	RNaseP_bact_a links to Rfam database...	0.54	0.51	0.57	64	76523	52	6	43	3	61
ASE_00430	RNaseP_bact_a links to Rfam database...	0.64	0.62	0.67	60	46881	36	1	29	6	37
ASE_00437	RNaseP_bact_a links to Rfam database...	0.45	0.42	0.48	57	79283	62	1	60	1	78
ASE_00441	RNaseP_bact_a links to Rfam database...	0.73	0.65	0.81	73	64171	21	6	11	4	39
ASE_00448	RNaseP_bact_a links to Rfam database...	0.37	0.34	0.40	38	64167	62	5	51	6	74
ASE_00451	RNaseP_bact_a links to Rfam database...	0.37	0.35	0.40	44	70766	67	2	64	1	81
CRW_00548	5S_rRNA links to Rfam database...	0.39	0.37	0.42	14	7348	19	2	17	0	24
CRW_00552	5S_rRNA links to Rfam database...	0.38	0.36	0.41	14	7106	22	2	18	2	25
CRW_00555	5S_rRNA links to Rfam database...	0.28	0.25	0.31	10	7594	22	2	20	0	30
CRW_00567	5S_rRNA links to Rfam database...	0.49	0.45	0.53	18	7469	18	4	12	2	22
CRW_00570	5S_rRNA links to Rfam database...	0.83	0.81	0.86	30	6868	6	0	5	1	7
CRW_00573	5S_rRNA links to Rfam database...	0.26	0.25	0.27	10	7103	28	1	26	1	30
CRW_01484	5S_rRNA links to Rfam database...	0.42	0.41	0.44	16	7467	20	2	18	0	23
CRW_01485	5S_rRNA links to Rfam database...	0.43	0.38	0.48	15	7472	16	2	14	0	24
CRW_01487	5S_rRNA links to Rfam database...	0.56	0.51	0.62	21	7469	13	2	11	0	20
CRW_01489	5S_rRNA links to Rfam database...	0.42	0.41	0.44	16	7467	20	3	17	0	23
CRW_01491	5S_rRNA links to Rfam database...	0.00	0.00	0.00	0	8352	33	1	32	0	43
CRW_01492	5S_rRNA links to Rfam database...	0.77	0.74	0.82	31	7588	10	0	7	3	11
CRW_01494	5S_rRNA links to Rfam database...	0.73	0.65	0.81	26	7108	8	0	6	2	14
CRW_01497	5S_rRNA links to Rfam database...	0.33	0.28	0.41	11	7113	18	0	16	2	29
CRW_01498	5S_rRNA links to Rfam database...	0.86	0.77	0.97	33	8094	2	0	1	1	10
CRW_01499	5S_rRNA links to Rfam database...	0.27	0.24	0.30	10	7968	24	1	22	1	31
CRW_01500	5S_rRNA links to Rfam database...	0.83	0.79	0.88	30	7716	5	2	2	1	8
CRW_01501	5S_rRNA links to Rfam database...	0.80	0.76	0.85	34	8475	6	0	6	0	11
CRW_01508	5S_rRNA links to Rfam database...	0.49	0.45	0.53	19	7965	19	3	14	2	23
CRW_01532	5S_rRNA links to Rfam database...	0.46	0.41	0.54	15	7112	16	1	12	3	22
CRW_01533	5S_rRNA links to Rfam database...	0.57	0.51	0.63	19	7110	15	2	9	4	18
CRW_01534	5S_rRNA links to Rfam database...	0.25	0.24	0.26	9	7106	25	7	18	0	28
CRW_01535	5S_rRNA links to Rfam database...	0.38	0.38	0.38	14	7103	24	3	20	1	23
CRW_01536	5S_rRNA links to Rfam database...	0.74	0.68	0.81	25	6990	7	0	6	1	12
CRW_01537	5S_rRNA links to Rfam database...	0.17	0.14	0.23	5	7118	17	2	15	0	32
CRW_01539	5S_rRNA links to Rfam database...	0.55	0.49	0.62	18	7111	11	3	8	0	19
CRW_01540	5S_rRNA links to Rfam database...	0.69	0.65	0.73	24	7107	11	0	9	2	13
CRW_01541	5S_rRNA links to Rfam database...	0.26	0.24	0.28	9	7108	23	6	17	0	28
CRW_01542	5S_rRNA links to Rfam database...	0.72	0.65	0.80	24	7110	11	0	6	5	13
CRW_01544	5S_rRNA links to Rfam database...	0.73	0.70	0.76	26	7106	9	2	6	1	11
CRW_01548	5S_rRNA links to Rfam database...	0.42	0.41	0.44	15	6987	20	3	16	1	22
CRW_01555	5S_rRNA links to Rfam database...	0.73	0.65	0.83	24	9016	10	3	2	5	13
CRW_01556	5S_rRNA links to Rfam database...	0.77	0.70	0.84	26	7109	6	0	5	1	11
CRW_01557	5S_rRNA links to Rfam database...	0.41	0.41	0.42	15	7104	21	3	18	0	22
CRW_01559	5S_rRNA links to Rfam database...	0.81	0.73	0.90	27	7230	7	0	3	4	10
CRW_01562	5S_rRNA links to Rfam database...	0.22	0.22	0.23	8	7105	28	1	26	1	29
CRW_01563	5S_rRNA links to Rfam database...	0.52	0.51	0.53	19	6867	17	2	15	0	18
CRW_01566	5S_rRNA links to Rfam database...	0.43	0.41	0.47	15	7108	18	2	15	1	22
CRW_01568	5S_rRNA links to Rfam database...	0.26	0.24	0.29	9	7109	22	3	19	0	28
CRW_01569	5S_rRNA links to Rfam database...	0.25	0.24	0.27	9	7107	25	2	22	1	28
CRW_01570	5S_rRNA links to Rfam database...	0.66	0.59	0.73	22	7110	14	2	6	6	15
CRW_01572	5S_rRNA links to Rfam database...	0.39	0.35	0.45	13	6992	18	2	14	2	24
CRW_01573	5S_rRNA links to Rfam database...	0.21	0.22	0.22	8	7223	29	3	26	0	29
CRW_01578	5S_rRNA links to Rfam database...	0.40	0.41	0.39	15	7102	23	3	20	0	22
CRW_01580	5S_rRNA links to Rfam database...	0.28	0.24	0.32	9	7112	19	3	16	0	28
CRW_01581	5S_rRNA links to Rfam database...	0.18	0.16	0.21	6	7111	23	1	22	0	31
CRW_01583	5S_rRNA links to Rfam database...	0.39	0.35	0.43	13	7110	17	3	14	0	24
CRW_01584	5S_rRNA links to Rfam database...	0.35	0.35	0.36	13	7104	23	4	19	0	24
CRW_01590	5S_rRNA links to Rfam database...	0.24	0.24	0.25	9	7104	28	3	24	1	28
CRW_01593	5S_rRNA links to Rfam database...	0.25	0.24	0.27	9	7107	24	5	19	0	28
CRW_01595	5S_rRNA links to Rfam database...	0.00	0.00	0.00	0	8486	30	3	26	1	37
CRW_01599	5S_rRNA links to Rfam database...	0.44	0.43	0.46	16	7105	19	1	18	0	21
CRW_01603	5S_rRNA links to Rfam database...	0.22	0.22	0.24	8	7106	26	6	20	0	29
CRW_01605	5S_rRNA links to Rfam database...	0.64	0.54	0.77	20	7114	11	0	6	5	17
CRW_01606	5S_rRNA links to Rfam database...	0.25	0.24	0.26	9	7105	26	4	22	0	28
CRW_01608	5S_rRNA links to Rfam database...	0.55	0.54	0.57	20	8350	16	3	12	1	17
CRW_01616	5S_rRNA links to Rfam database...	0.39	0.38	0.40	14	7105	22	3	18	1	23
CRW_01617	5S_rRNA links to Rfam database...	0.25	0.22	0.30	8	7113	19	3	16	0	29
CRW_01620	5S_rRNA links to Rfam database...	0.25	0.24	0.26	9	6986	27	7	19	1	28
CRW_01621	5S_rRNA links to Rfam database...	0.68	0.59	0.79	22	7112	7	0	6	1	15
CRW_01623	5S_rRNA links to Rfam database...	0.20	0.19	0.21	7	7107	26	2	24	0	30
CRW_01625	5S_rRNA links to Rfam database...	0.31	0.32	0.30	12	7100	29	4	24	1	25
PDB_00012	mir-TAR links to Rfam database...	1.00	1.00	1.00	7	399	3	0	0	3	0
PDB_00070	tRNA links to Rfam database...	0.66	0.67	0.67	16	2826	8	1	7	0	8
PDB_00213	Gammaretro_CES links to Rfam database...	0.72	0.68	0.76	28	5013	9	0	9	0	13
PDB_00229	tRNA links to Rfam database...	0.96	0.91	1.00	21	2754	0	0	0	0	2
PDB_00327	tRNA links to Rfam database...	0.86	0.74	1.00	17	3064	0	0	0	0	6
PDB_00362	tRNA links to Rfam database...	0.98	0.95	1.00	21	2829	0	0	0	0	1
PDB_00402	tRNA links to Rfam database...	0.96	0.91	1.00	21	2754	0	0	0	0	2
PDB_00431	tRNA links to Rfam database...	0.88	0.95	0.83	19	2188	5	4	0	1	1
PDB_00474	tRNA links to Rfam database...	0.40	0.39	0.41	9	2679	15	1	12	2	14
PDB_00553	mir-TAR links to Rfam database...	1.00	1.00	1.00	11	454	0	0	0	0	0
PDB_00571	tRNA links to Rfam database...	0.87	0.80	0.95	20	3300	1	1	0	0	5
PDB_00667	tRNA links to Rfam database...	0.71	0.68	0.75	15	2830	7	4	1	2	7
PDB_00741	Entero_5_CRE links to Rfam database...	0.91	0.82	1.00	14	689	0	0	0	0	3
PDB_00810	s2m links to Rfam database...	0.51	0.41	0.64	7	1070	4	2	2	0	10
PDB_00828	Purine links to Rfam database...	0.88	0.78	1.00	21	2464	0	0	0	0	6
PDB_00829	Purine links to Rfam database...	0.86	0.75	1.00	18	2260	0	0	0	0	6
PDB_00876	HIV_FE links to Rfam database...	0.97	0.95	1.00	19	971	0	0	0	0	1
PDB_01002	tRNA links to Rfam database...	0.95	0.90	1.00	19	2756	2	0	0	2	2
PDB_01020	Purine links to Rfam database...	0.86	0.74	1.00	17	2261	1	0	0	1	6
PDB_01050	UnaL2 links to Rfam database...	0.92	0.85	1.00	11	619	2	0	0	2	2
PDB_01053	tRNA links to Rfam database...	1.00	1.00	1.00	16	1362	0	0	0	0	0
PDB_01073	SAM links to Rfam database...	0.52	0.47	0.57	16	4343	13	2	10	1	18
PDB_01114	TPP links to Rfam database...	0.45	0.37	0.56	10	2832	8	0	8	0	17
PDB_01152	HIV_FS2 links to Rfam database...	0.88	0.79	1.00	11	550	0	0	0	0	3
PDB_01236	ykoK links to Rfam database...	0.79	0.70	0.88	38	11585	6	0	5	1	16
RFA_00389	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00390	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00391	Hammerhead_3 links to Rfam database...	0.93	0.87	1.00	13	1418	2	0	0	2	2
RFA_00396	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	2	0	0	2	1
RFA_00402	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	0	0	0	0	0
RFA_00409	Hammerhead_3 links to Rfam database...	0.77	0.60	1.00	9	1422	1	0	0	1	6
RFA_00416	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1470	4	0	0	4	0
RFA_00433	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00434	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00436	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00440	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1470	2	0	0	2	0
RFA_00442	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00444	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1525	1	0	0	1	0
RFA_00583	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4935	6	0	0	6	0
RFA_00584	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	2911	9	0	0	9	0
RFA_00585	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4836	8	0	0	8	0
RFA_00586	Y_RNA links to Rfam database...	0.89	0.80	1.00	12	3904	7	0	0	7	3
RFA_00587	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4836	8	0	0	8	0
RFA_00588	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4545	13	0	0	13	0
RFA_00589	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4356	15	0	0	15	0
RFA_00594	Y_RNA links to Rfam database...	0.90	0.87	0.93	13	2761	4	0	1	3	2
RFA_00596	Y_RNA links to Rfam database...	0.00	0.00	0.00	0	5983	16	5	7	4	15
RFA_00599	Telomerase-vert links to Rfam database...	0.39	0.40	0.38	44	101359	92	13	59	20	67
RFA_00601	Telomerase-vert links to Rfam database...	0.09	0.10	0.08	11	99104	129	18	102	9	103
RFA_00658	Hammerhead_1 links to Rfam database...	0.59	0.50	0.70	7	1118	5	0	3	2	7
RFA_00664	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	980	11	0	10	1	14
RFA_00667	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	981	10	1	8	1	14
RFA_00668	Hammerhead_1 links to Rfam database...	0.50	0.43	0.60	6	980	4	0	4	0	8
RFA_00672	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	895	10	0	8	2	13
RFA_00673	Hammerhead_1 links to Rfam database...	0.47	0.36	0.63	5	1120	4	0	3	1	9
RFA_00674	Hammerhead_1 links to Rfam database...	0.96	0.93	1.00	13	1115	1	0	0	1	1
RFA_00675	Hammerhead_1 links to Rfam database...	0.28	0.29	0.29	4	976	10	1	9	0	10
RFA_00677	Hammerhead_1 links to Rfam database...	0.74	0.71	0.77	10	977	6	0	3	3	4
RFA_00678	Hammerhead_1 links to Rfam database...	0.53	0.29	1.00	4	942	0	0	0	0	10
RFA_00680	Hammerhead_1 links to Rfam database...	0.74	0.71	0.77	10	1115	6	0	3	3	4
RFA_00704	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	983	8	0	7	1	14
RFA_00707	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	1030	5	0	5	0	14
RFA_00715	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	936	10	0	10	0	14
RFA_00717	Hammerhead_1 links to Rfam database...	0.69	0.64	0.75	9	891	3	0	3	0	5
RFA_00730	s2m links to Rfam database...	0.43	0.42	0.45	5	892	7	1	5	1	7
RFA_00731	s2m links to Rfam database...	0.48	0.42	0.56	5	894	5	1	3	1	7
RFA_00733	s2m links to Rfam database...	0.43	0.42	0.45	5	892	7	1	5	1	7
RFA_00734	s2m links to Rfam database...	0.67	0.58	0.78	7	894	3	0	2	1	5
RFA_00736	s2m links to Rfam database...	0.48	0.42	0.56	5	894	5	1	3	1	7
RFA_00737	s2m links to Rfam database...	0.43	0.42	0.45	5	892	7	0	6	1	7
RFA_00745	s2m links to Rfam database...	0.43	0.42	0.45	5	935	7	1	5	1	7
RFA_00749	s2m links to Rfam database...	0.48	0.42	0.56	5	894	5	1	3	1	7
RFA_00758	s2m links to Rfam database...	0.40	0.33	0.50	4	895	4	2	2	0	8
RFA_00762	s2m links to Rfam database...	0.31	0.33	0.31	4	890	9	2	7	0	8
RFA_00763	s2m links to Rfam database...	0.43	0.42	0.45	5	892	7	1	5	1	7
RFA_00764	s2m links to Rfam database...	0.43	0.42	0.45	5	892	7	1	5	1	7
RFA_00765	s2m links to Rfam database...	0.51	0.42	0.63	5	895	4	0	3	1	7
RFA_00786	Gammaretro_CES links to Rfam database...	0.21	0.19	0.25	6	5026	19	2	16	1	26
RFA_00791	Gammaretro_CES links to Rfam database...	0.60	0.56	0.64	18	5123	11	0	10	1	14
RFA_00792	Gammaretro_CES links to Rfam database...	0.97	0.94	1.00	30	5020	1	0	0	1	2
RFA_00801	Gammaretro_CES links to Rfam database...	0.69	0.63	0.77	20	5024	8	0	6	2	12
SPR_00007	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00009	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	0	0	0	0	0
SPR_00010	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00012	tRNA links to Rfam database...	0.97	0.95	1.00	19	2831	0	0	0	0	1
SPR_00013	tRNA links to Rfam database...	0.97	0.95	1.00	19	2831	0	0	0	0	1
SPR_00016	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00017	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00025	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	1	0	0	1	0
SPR_00026	tRNA links to Rfam database...	0.90	0.81	1.00	17	2909	0	0	0	0	4
SPR_00027	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00036	tRNA links to Rfam database...	0.89	0.80	1.00	16	2759	1	0	0	1	4
SPR_00045	tRNA links to Rfam database...	0.77	0.77	0.77	17	2828	5	0	5	0	5
SPR_00064	tRNA links to Rfam database...	0.52	0.57	0.48	12	2825	13	2	11	0	9
SPR_00065	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00066	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00068	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00070	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00074	tRNA links to Rfam database...	0.97	0.95	1.00	19	2831	1	0	0	1	1
SPR_00079	tRNA links to Rfam database...	0.83	0.68	1.00	13	2472	1	0	0	1	6
SPR_00086	tRNA links to Rfam database...	0.76	0.76	0.76	16	2829	5	2	3	0	5
SPR_00087	tRNA links to Rfam database...	0.42	0.45	0.41	9	2828	14	4	9	1	11
SPR_00088	tRNA links to Rfam database...	0.42	0.45	0.41	9	2828	14	4	9	1	11
SPR_00089	tRNA links to Rfam database...	0.42	0.45	0.41	9	2828	14	4	9	1	11
SPR_00090	tRNA links to Rfam database...	0.95	0.90	1.00	18	2832	0	0	0	0	2
SPR_00091	tRNA links to Rfam database...	0.42	0.45	0.41	9	2828	14	4	9	1	11
SPR_00095	tRNA links to Rfam database...	0.76	0.76	0.76	16	2829	5	2	3	0	5
SPR_00111	tRNA links to Rfam database...	1.00	1.00	1.00	21	2680	1	0	0	1	0
SPR_00112	tRNA links to Rfam database...	1.00	1.00	1.00	21	2680	2	0	0	2	0
SPR_00115	tRNA links to Rfam database...	0.83	0.81	0.85	17	2681	3	1	2	0	4
SPR_00117	tRNA links to Rfam database...	0.68	0.71	0.65	15	2827	8	1	7	0	6
SPR_00139	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	1	0	0	1	0
SPR_00153	tRNA links to Rfam database...	0.40	0.38	0.42	8	2907	11	3	8	0	13
SPR_00155	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00156	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00176	tRNA links to Rfam database...	0.53	0.55	0.52	11	2829	10	2	8	0	9
SPR_00177	tRNA links to Rfam database...	0.55	0.57	0.55	12	2828	10	3	7	0	9
SPR_00178	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00191	tRNA links to Rfam database...	0.18	0.19	0.19	4	2829	17	4	13	0	17
SPR_00200	tRNA links to Rfam database...	0.74	0.76	0.73	16	2828	6	3	3	0	5
SPR_00224	tRNA links to Rfam database...	1.00	1.00	1.00	20	3721	3	0	0	3	0
SPR_00271	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00273	tRNA links to Rfam database...	0.76	0.76	0.76	16	2829	6	0	5	1	5
SPR_00276	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00277	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00294	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00295	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	1	0	0	1	0
SPR_00314	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	2	0	0	2	0
SPR_00315	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	2	0	0	2	0
SPR_00317	tRNA links to Rfam database...	0.56	0.60	0.52	12	2903	11	5	6	0	8
SPR_00318	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	2	0	0	2	0
SPR_00321	tRNA links to Rfam database...	0.76	0.76	0.76	16	2982	5	3	2	0	5
SPR_00333	tRNA links to Rfam database...	0.54	0.62	0.48	13	2748	15	4	10	1	8
SPR_00352	tRNA links to Rfam database...	0.71	0.76	0.67	16	2902	8	3	5	0	5
SPR_00353	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00357	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00358	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00370	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	0	0	0	0	0
SPR_00386	tRNA links to Rfam database...	0.91	1.00	0.83	20	4162	8	4	0	4	0
SPR_00414	tRNA links to Rfam database...	0.95	0.95	0.95	20	3549	5	0	1	4	1
SPR_00415	tRNA links to Rfam database...	0.62	0.57	0.67	12	3552	10	3	3	4	9
SPR_00417	tRNA links to Rfam database...	0.60	0.55	0.67	12	3552	10	0	6	4	10
SPR_00418	tRNA links to Rfam database...	0.60	0.55	0.67	12	3552	10	0	6	4	10
SPR_00434	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00435	tRNA links to Rfam database...	0.76	0.76	0.76	16	2829	7	0	5	2	5
SPR_00436	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	2	0	0	2	0
SPR_00437	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	2	0	0	2	0
SPR_00438	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	0	0	0	0	0
SPR_00452	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00455	tRNA links to Rfam database...	0.31	0.33	0.30	7	2827	16	5	11	0	14
SPR_00456	tRNA links to Rfam database...	0.57	0.57	0.57	12	2829	12	1	8	3	9
SPR_00476	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	0	0	0	0	0
SPR_00479	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00482	tRNA links to Rfam database...	0.90	0.81	1.00	17	2684	0	0	0	0	4
SPR_00483	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00487	tRNA links to Rfam database...	0.90	0.82	1.00	18	2683	0	0	0	0	4
SPR_00493	tRNA links to Rfam database...	0.68	0.68	0.68	15	2753	7	2	5	0	7
SPR_00496	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	0	0	0	0	0
SPR_00497	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	0	0	0	0	0
SPR_00502	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00504	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	0	0	0	0	0
SPR_00505	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00506	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00509	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00512	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00513	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00518	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00548	tRNA links to Rfam database...	0.90	0.86	0.95	18	3384	1	0	1	0	3
SPR_00557	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00561	tRNA links to Rfam database...	0.40	0.43	0.39	9	2827	14	1	13	0	12
SPR_00590	tRNA links to Rfam database...	0.83	0.85	0.81	17	2982	6	1	3	2	3
SPR_00593	tRNA links to Rfam database...	0.39	0.37	0.41	7	2758	10	2	8	0	12
SPR_00595	tRNA links to Rfam database...	0.78	0.76	0.80	16	2755	4	2	2	0	5
SPR_00598	tRNA links to Rfam database...	0.87	0.81	0.94	17	2985	2	0	1	1	4
SPR_00610	tRNA links to Rfam database...	0.87	0.81	0.94	17	2538	2	0	1	1	4
SPR_00620	tRNA links to Rfam database...	0.79	0.81	0.77	17	2981	6	2	3	1	4
SPR_00721	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	2	0	0	2	0
SPR_00722	tRNA links to Rfam database...	0.74	0.80	0.70	16	2903	7	5	2	0	4
SPR_00758	tRNA links to Rfam database...	0.58	0.57	0.60	12	2983	8	1	7	0	9
SPR_00760	tRNA links to Rfam database...	1.00	1.00	1.00	21	3549	0	0	0	0	0
SPR_00777	tRNA links to Rfam database...	0.53	0.55	0.52	11	2607	11	3	7	1	9
SPR_00867	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00868	tRNA links to Rfam database...	0.95	0.95	0.95	20	2905	2	0	1	1	1
SPR_00943	tRNA links to Rfam database...	0.85	0.85	0.85	17	2536	5	0	3	2	3
SPR_00957	tRNA links to Rfam database...	0.78	0.76	0.80	16	2983	5	0	4	1	5
SPR_01040	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	1	0	0	1	0
SPR_01088	tRNA links to Rfam database...	0.53	0.57	0.50	12	2902	12	4	8	0	9
SPR_01095	tRNA links to Rfam database...	0.76	0.76	0.76	16	2829	7	0	5	2	5
SPR_01106	tRNA links to Rfam database...	0.51	0.52	0.50	11	2534	11	3	8	0	10
SPR_01117	tRNA links to Rfam database...	1.00	1.00	1.00	21	2982	1	0	0	1	0
SPR_01157	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	1	0	0	1	0
SRP_00006	Metazoa_SRP links to Rfam database...	0.14	0.13	0.15	13	45669	73	3	68	2	88
SRP_00020	Bacteria_small_SRP links to Rfam database...	0.73	0.73	0.73	24	5532	10	1	8	1	9
SRP_00024	Bacteria_large_SRP links to Rfam database...	0.48	0.46	0.51	40	37596	40	2	37	1	47
SRP_00026	Bacteria_large_SRP links to Rfam database...	0.45	0.42	0.47	37	36778	46	2	39	5	51
SRP_00027	Bacteria_large_SRP links to Rfam database...	0.41	0.39	0.43	34	37048	46	7	39	0	53
SRP_00030	Bacteria_large_SRP links to Rfam database...	0.40	0.38	0.43	33	36780	44	6	37	1	55
SRP_00031	Bacteria_large_SRP links to Rfam database...	0.40	0.38	0.43	34	36236	45	2	43	0	55
SRP_00037	Bacteria_large_SRP links to Rfam database...	0.33	0.30	0.36	26	36513	46	4	42	0	61
SRP_00038	Bacteria_small_SRP links to Rfam database...	0.18	0.18	0.19	6	5018	26	2	24	0	27
SRP_00042	Bacteria_small_SRP links to Rfam database...	0.41	0.36	0.47	9	3986	12	1	9	2	16
SRP_00046	Bacteria_small_SRP links to Rfam database...	0.57	0.56	0.58	18	4722	14	1	12	1	14
SRP_00050	Metazoa_SRP links to Rfam database...	0.52	0.49	0.55	49	44761	40	4	36	0	50
SRP_00051	Bacteria_small_SRP links to Rfam database...	0.27	0.30	0.25	9	5424	29	9	18	2	21
SRP_00054	Bacteria_small_SRP links to Rfam database...	0.24	0.25	0.24	8	5532	25	3	22	0	24
SRP_00057	Bacteria_small_SRP links to Rfam database...	0.74	0.69	0.80	24	6298	7	1	5	1	11
SRP_00058	Bacteria_small_SRP links to Rfam database...	0.38	0.38	0.38	13	5744	23	4	17	2	21
SRP_00066	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	45360	91	8	83	0	100
SRP_00072	Bacteria_small_SRP links to Rfam database...	0.25	0.28	0.24	8	6294	26	3	23	0	21
SRP_00074	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6522	36	4	29	3	29
SRP_00077	Bacteria_small_SRP links to Rfam database...	0.37	0.38	0.37	14	6632	24	4	20	0	23
SRP_00081	Bacteria_small_SRP links to Rfam database...	0.38	0.39	0.39	12	5534	19	2	17	0	19
SRP_00084	Bacteria_small_SRP links to Rfam database...	0.65	0.56	0.76	19	5435	6	2	4	0	15
SRP_00088	Bacteria_large_SRP links to Rfam database...	0.53	0.52	0.54	46	34106	39	4	35	0	43
SRP_00089	Bacteria_large_SRP links to Rfam database...	0.76	0.70	0.82	63	35701	14	1	13	0	27
SRP_00090	Bacteria_large_SRP links to Rfam database...	0.18	0.17	0.21	15	35439	58	7	50	1	75
SRP_00094	Bacteria_small_SRP links to Rfam database...	0.61	0.63	0.60	15	4070	12	1	9	2	9
SRP_00095	Bacteria_small_SRP links to Rfam database...	0.26	0.28	0.26	7	3978	20	5	15	0	18
SRP_00098	Bacteria_small_SRP links to Rfam database...	0.36	0.35	0.38	13	6407	22	2	19	1	24
SRP_00103	Metazoa_SRP links to Rfam database...	0.05	0.05	0.06	5	45362	84	7	77	0	97
SRP_00107	Bacteria_small_SRP links to Rfam database...	0.13	0.16	0.12	3	3630	24	4	18	2	16
SRP_00121	Bacteria_small_SRP links to Rfam database...	0.53	0.48	0.60	12	4258	8	1	7	0	13
SRP_00128	Bacteria_small_SRP links to Rfam database...	0.45	0.44	0.46	16	6751	19	1	18	0	20
SRP_00132	Bacteria_small_SRP links to Rfam database...	0.35	0.34	0.36	10	4823	21	2	16	3	19
SRP_00134	Bacteria_large_SRP links to Rfam database...	0.16	0.17	0.16	5	5964	29	6	20	3	24
SRP_00141	Bacteria_small_SRP links to Rfam database...	0.84	0.80	0.87	33	6290	5	1	4	0	8
SRP_00152	Plant_SRP links to Rfam database...	0.44	0.44	0.45	45	45654	54	11	43	0	58
SRP_00161	Bacteria_small_SRP links to Rfam database...	0.39	0.41	0.38	9	2826	16	3	12	1	13
SRP_00162	Bacteria_small_SRP links to Rfam database...	0.51	0.48	0.55	11	2906	10	2	7	1	12
SRP_00163	Bacteria_small_SRP links to Rfam database...	0.27	0.27	0.28	7	3461	19	4	14	1	19
SRP_00164	Bacteria_small_SRP links to Rfam database...	0.28	0.29	0.29	10	6868	25	3	22	0	25
SRP_00170	Bacteria_small_SRP links to Rfam database...	0.37	0.36	0.39	9	4072	15	4	10	1	16
SRP_00173	Bacteria_large_SRP links to Rfam database...	0.73	0.70	0.76	63	38143	22	5	15	2	27
SRP_00174	Bacteria_large_SRP links to Rfam database...	0.33	0.31	0.35	27	38704	50	7	43	0	59
SRP_00178	Plant_SRP links to Rfam database...	0.19	0.18	0.21	18	45666	69	8	61	0	84
SRP_00179	Plant_SRP links to Rfam database...	0.46	0.43	0.51	45	45967	47	6	38	3	60
SRP_00184	Plant_SRP links to Rfam database...	0.00	0.00	0.00	0	45961	95	9	86	0	100
SRP_00194	Bacteria_small_SRP links to Rfam database...	0.39	0.33	0.47	7	3225	8	0	8	0	14
SRP_00209	Bacteria_small_SRP links to Rfam database...	0.47	0.48	0.46	13	4628	15	3	12	0	14
SRP_00213	Bacteria_small_SRP links to Rfam database...	0.37	0.40	0.36	10	4158	18	7	11	0	15
SRP_00215	Bacteria_small_SRP links to Rfam database...	0.58	0.52	0.65	13	3220	7	2	5	0	12
SRP_00227	Bacteria_small_SRP links to Rfam database...	0.63	0.58	0.69	18	5125	8	0	8	0	13
SRP_00228	Metazoa_SRP links to Rfam database...	0.41	0.38	0.46	36	45372	45	2	41	2	59
SRP_00231	Bacteria_small_SRP links to Rfam database...	0.62	0.59	0.67	20	5430	10	2	8	0	14
SRP_00234	Bacteria_large_SRP links to Rfam database...	0.34	0.34	0.34	29	36230	60	5	51	4	57
SRP_00243	Bacteria_small_SRP links to Rfam database...	0.34	0.29	0.41	9	5129	13	2	11	0	22
SRP_00244	Bacteria_small_SRP links to Rfam database...	0.78	0.69	0.87	27	6872	5	2	2	1	12
SRP_00250	Bacteria_small_SRP links to Rfam database...	0.51	0.50	0.53	18	6752	18	2	14	2	18
SRP_00251	Bacteria_small_SRP links to Rfam database...	0.66	0.67	0.65	24	6984	13	0	13	0	12
SRP_00266	Bacteria_small_SRP links to Rfam database...	0.68	0.55	0.84	16	4637	3	0	3	0	13
SRP_00268	Bacteria_small_SRP links to Rfam database...	0.38	0.37	0.40	10	4161	15	3	12	0	17
SRP_00269	Bacteria_small_SRP links to Rfam database...	0.43	0.42	0.44	14	5018	19	2	16	1	19
SRP_00270	Bacteria_small_SRP links to Rfam database...	0.26	0.26	0.27	8	4626	23	2	20	1	23
SRP_00271	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	3217	23	3	20	0	24
SRP_00273	Bacteria_small_SRP links to Rfam database...	0.89	0.88	0.90	35	6747	5	2	2	1	5
SRP_00274	Bacteria_small_SRP links to Rfam database...	0.83	0.79	0.88	30	6869	4	1	3	0	8
SRP_00303	Bacteria_small_SRP links to Rfam database...	0.35	0.34	0.37	11	6640	19	1	18	0	21
SRP_00308	Bacteria_large_SRP links to Rfam database...	0.45	0.42	0.48	37	36238	40	5	35	0	51
SRP_00310	Bacteria_small_SRP links to Rfam database...	0.60	0.57	0.65	13	2906	8	1	6	1	10
SRP_00312	Bacteria_small_SRP links to Rfam database...	0.35	0.37	0.33	10	4156	20	7	13	0	17
SRP_00317	Metazoa_SRP links to Rfam database...	0.57	0.52	0.63	51	45069	32	1	29	2	47
SRP_00318	Bacteria_small_SRP links to Rfam database...	0.50	0.43	0.59	10	2986	7	1	6	0	13
SRP_00325	Bacteria_small_SRP links to Rfam database...	0.75	0.73	0.77	24	4340	8	0	7	1	9
SRP_00333	Bacteria_small_SRP links to Rfam database...	0.70	0.65	0.76	22	5122	7	3	4	0	12
SRP_00335	Bacteria_large_SRP links to Rfam database...	0.19	0.26	0.15	10	35178	77	23	34	20	29
SRP_00338	Bacteria_small_SRP links to Rfam database...	0.75	0.75	0.75	27	5424	9	3	6	0	9
SRP_00341	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	4731	22	4	18	0	31
SRP_00342	Bacteria_small_SRP links to Rfam database...	0.22	0.24	0.21	6	3977	22	5	17	0	19
SRP_00347	Metazoa_SRP links to Rfam database...	0.31	0.30	0.32	29	46575	64	8	53	3	67
SRP_00350	Bacteria_small_SRP links to Rfam database...	0.34	0.33	0.36	9	3891	16	6	10	0	18
SRP_00356	Bacteria_small_SRP links to Rfam database...	0.47	0.43	0.52	13	5025	12	4	8	0	17
SRP_00357	Bacteria_small_SRP links to Rfam database...	0.46	0.47	0.46	17	5319	20	3	17	0	19
SRP_00358	Bacteria_small_SRP links to Rfam database...	0.39	0.37	0.41	13	6296	19	1	18	0	22
SRP_00367	Bacteria_small_SRP links to Rfam database...	0.45	0.43	0.47	15	6754	17	0	17	0	20
SRP_00368	Metazoa_SRP links to Rfam database...	0.42	0.40	0.45	39	43869	50	7	41	2	59
SRP_00369	Bacteria_small_SRP links to Rfam database...	0.60	0.54	0.68	19	5750	9	0	9	0	16
SRP_00383	Bacteria_small_SRP links to Rfam database...	0.13	0.13	0.14	3	3219	18	2	16	0	21
TMR_00017	tmRNA links to Rfam database...	0.25	0.24	0.26	24	67070	73	5	62	6	78
TMR_00018	tmRNA links to Rfam database...	0.56	0.59	0.54	54	64520	48	15	31	2	38
TMR_00038	tmRNA links to Rfam database...	0.28	0.28	0.29	31	71145	81	15	62	4	79
TMR_00042	tmRNA links to Rfam database...	0.16	0.15	0.16	15	62744	81	8	68	5	83
TMR_00046	tmRNA links to Rfam database...	0.28	0.29	0.26	28	62729	78	15	63	0	68
TMR_00048	tmRNA links to Rfam database...	0.31	0.33	0.30	31	64876	75	16	57	2	64
TMR_00080	tmRNA links to Rfam database...	0.45	0.46	0.44	44	70400	57	19	37	1	52
TMR_00082	tmRNA links to Rfam database...	0.50	0.49	0.52	47	67805	48	11	33	4	49
TMR_00123	tmRNA links to Rfam database...	0.26	0.25	0.27	25	66338	71	4	63	4	76
TMR_00137	tmRNA links to Rfam database...	0.39	0.36	0.43	32	61000	48	8	35	5	57
TMR_00142	tmRNA links to Rfam database...	0.54	0.53	0.55	54	70778	56	10	34	12	48
TMR_00207	tmRNA links to Rfam database...	0.25	0.24	0.25	25	72291	81	7	67	7	78
TMR_00257	tmRNA links to Rfam database...	0.24	0.22	0.25	22	67073	67	13	53	1	76
TMR_00271	tmRNA links to Rfam database...	0.44	0.45	0.44	41	64168	61	6	46	9	50
TMR_00366	tmRNA links to Rfam database...	0.50	0.51	0.50	51	67794	55	15	36	4	49
TMR_00378	tmRNA links to Rfam database...	0.43	0.44	0.42	43	67793	60	13	47	0	54
TMR_00399	tmRNA links to Rfam database...	0.26	0.27	0.25	25	64879	79	17	59	3	69
TMR_00404	tmRNA links to Rfam database...	0.42	0.46	0.39	42	67419	67	21	46	0	50
TMR_00427	tmRNA links to Rfam database...	0.33	0.31	0.36	30	67445	60	9	44	7	67
TMR_00443	tmRNA links to Rfam database...	0.52	0.48	0.56	50	67071	42	9	31	2	54
TMR_00451	tmRNA links to Rfam database...	0.21	0.22	0.20	20	63448	82	16	62	4	69
TMR_00458	tmRNA links to Rfam database...	0.37	0.34	0.40	32	63465	53	15	34	4	61
TMR_00469	tmRNA links to Rfam database...	0.35	0.34	0.35	34	64524	67	5	57	5	66
TMR_00472	tmRNA links to Rfam database...	0.23	0.24	0.23	23	64519	86	16	62	8	74
TMR_00519	tmRNA links to Rfam database...	0.25	0.25	0.24	24	63091	77	12	63	2	71
TMR_00520	tmRNA links to Rfam database...	0.35	0.33	0.37	33	63100	66	11	46	9	66
TMR_00522	tmRNA links to Rfam database...	0.37	0.36	0.39	35	63100	62	5	50	7	62
TMR_00528	tmRNA links to Rfam database...	0.46	0.44	0.48	43	63100	58	12	35	11	54
TMR_00568	tmRNA links to Rfam database...	0.35	0.33	0.37	33	60637	62	7	49	6	66
TMR_00571	tmRNA links to Rfam database...	0.43	0.41	0.45	41	60635	57	9	41	7	58
TMR_00580	tmRNA links to Rfam database...	0.46	0.43	0.49	43	60638	48	5	40	3	57
TMR_00584	tmRNA links to Rfam database...	0.58	0.55	0.61	53	60988	42	5	29	8	44
TMR_00586	tmRNA links to Rfam database...	0.42	0.39	0.44	38	60989	53	9	39	5	59
TMR_00616	tmRNA links to Rfam database...	0.26	0.26	0.26	26	67061	78	9	65	4	73
TMR_00699	tmRNA links to Rfam database...	0.41	0.41	0.41	42	67059	60	11	49	0	60
TMR_00702	tmRNA links to Rfam database...	0.25	0.26	0.25	26	67055	83	7	73	3	74

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Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.

Table of contents:

Overview

Performance plots

Performance of Multilign(20) - scored higher in this pairwise comparison

1. Total counts & total scores for Multilign(20)

2. Individual counts for Multilign(20) [ download as .csv ]

Performance of McQFold - scored lower in this pairwise comparison

1. Total counts & total scores for McQFold

2. Individual counts for McQFold [ download as .csv ]