CompaRNA - on-line benchmarks of RNA structure prediction methods

Laboratory of Structural Bioinformatics @ Adam Mickiewicz University in Poznan

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Overview

Metric	Murlet(20)		RNAfold
MCC	0.629	>	0.553
Average MCC ± 95% Confidence Intervals	0.673 ± 0.019	>	0.623 ± 0.022
Sensitivity	0.503	<	0.548
Positive Predictive Value	0.787	>	0.559
Total TP	15329	<	16697
Total TN	24119827	>	24109427
Total FP	4969	<	14829
Total FP CONTRA	544	<	2030
Total FP INCONS	3616	<	11162
Total FP COMP	809	<	1637
Total FN	15144	>	13776
P-value	3.56938820447e-08

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Performance plots

Comparison of performance of Murlet(20) and RNAfold. Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data (individual counts for Murlet(20) and RNAfold).
Average Matthews Correlation Coefficients (MCC) with 95% confidence intervals (CIs) were plotted for different RNA families, for which at least 3 members were present in the benchmarking dataset. 'n' denotes the number of MCCs used to calculate the average and CI. See tables below for raw data (individual counts for Murlet(20) and RNAfold).
Comparison of average Matthews Correlation Coefficients (MCCs) for Murlet(20) and RNAfold. The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data (individual counts for Murlet(20) and RNAfold).

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Performance of Murlet(20) - scored higher in this pairwise comparison

1. Total counts & total scores for Murlet(20)

Total Base Pair Counts
Total TP	15329
Total TN	24119827
Total FP	4969
Total FP CONTRA	544
Total FP INCONS	3616
Total FP COMP	809
Total FN	15144

Total Scores
MCC	0.629
Average MCC ± 95% Confidence Intervals	0.673 ± 0.019
Sensitivity	0.503
Positive Predictive Value	0.787
Nr of predictions	504

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2. Individual counts for Murlet(20) [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00004	RNaseP_bact_a links to Rfam database...	0.46	0.34	0.61	33	47841	21	1	20	0	64
ASE_00007	RNaseP_bact_a links to Rfam database...	0.71	0.57	0.89	63	59614	8	2	6	0	47
ASE_00018	RNaseP_bact_a links to Rfam database...	0.61	0.45	0.82	60	80528	13	3	10	0	74
ASE_00022	RNaseP_bact_b links to Rfam database...	0.67	0.50	0.89	62	82958	15	0	8	7	62
ASE_00028	RNaseP_bact_b links to Rfam database...	0.56	0.40	0.77	51	84600	15	5	10	0	75
ASE_00035	RNaseP_bact_a links to Rfam database...	0.62	0.49	0.79	58	70427	17	4	11	2	60
ASE_00040	RNaseP_bact_a links to Rfam database...	0.62	0.43	0.90	57	78940	6	0	6	0	76
ASE_00045	RNaseP_bact_b links to Rfam database...	0.73	0.56	0.94	45	47230	4	0	3	1	35
ASE_00064	RNaseP_bact_a links to Rfam database...	0.55	0.39	0.76	35	45405	14	3	8	3	54
ASE_00068	RNaseP_bact_a links to Rfam database...	0.62	0.42	0.90	36	37635	4	3	1	0	49
ASE_00075	RNaseP_bact_a links to Rfam database...	0.51	0.34	0.76	55	108739	19	1	16	2	107
ASE_00077	RNaseP_bact_a links to Rfam database...	0.48	0.35	0.67	30	45105	18	0	15	3	56
ASE_00078	RNaseP_bact_a links to Rfam database...	0.64	0.53	0.79	44	43015	12	3	9	0	39
ASE_00080	RNaseP_bact_a links to Rfam database...	0.31	0.21	0.46	26	71574	31	3	28	0	97
ASE_00081	RNaseP_bact_a links to Rfam database...	0.73	0.58	0.93	56	49710	5	0	4	1	41
ASE_00082	RNaseP_bact_a links to Rfam database...	0.27	0.20	0.37	23	70438	42	2	37	3	93
ASE_00083	RNaseP_bact_a links to Rfam database...	0.54	0.39	0.75	43	62424	14	2	12	0	67
ASE_00084	RNaseP_bact_a links to Rfam database...	0.53	0.36	0.77	36	53581	12	0	11	1	63
ASE_00087	RNaseP_bact_a links to Rfam database...	0.35	0.21	0.58	30	88358	22	0	22	0	114
ASE_00092	RNaseP_bact_a links to Rfam database...	0.58	0.40	0.85	45	63493	10	0	8	2	68
ASE_00104	RNaseP_bact_a links to Rfam database...	0.51	0.38	0.69	45	64196	20	1	19	0	74
ASE_00107	RNaseP_bact_a links to Rfam database...	0.64	0.48	0.86	61	73082	13	2	8	3	66
ASE_00114	RNaseP_bact_b links to Rfam database...	0.46	0.39	0.56	30	45397	28	2	22	4	47
ASE_00115	RNaseP_bact_a links to Rfam database...	0.46	0.30	0.71	30	54573	12	1	11	0	71
ASE_00119	RNaseP_bact_a links to Rfam database...	0.11	0.08	0.16	9	62779	48	2	45	1	99
ASE_00123	RNaseP_bact_a links to Rfam database...	0.55	0.40	0.76	34	38458	11	0	11	0	51
ASE_00135	RNaseP_bact_a links to Rfam database...	0.34	0.24	0.49	26	63137	29	3	24	2	83
ASE_00138	RNaseP_bact_a links to Rfam database...	0.60	0.47	0.76	38	40420	13	0	12	1	43
ASE_00142	RNaseP_bact_a links to Rfam database...	0.52	0.40	0.68	49	67089	23	1	22	0	73
ASE_00146	RNaseP_bact_a links to Rfam database...	0.70	0.56	0.87	69	70797	13	0	10	3	55
ASE_00153	RNaseP_nuc links to Rfam database...	0.34	0.23	0.50	17	57596	26	3	14	9	56
ASE_00161	RNaseP_bact_b links to Rfam database...	0.68	0.56	0.83	49	53569	16	0	10	6	38
ASE_00163	RNaseP_bact_a links to Rfam database...	0.47	0.32	0.70	30	53258	13	0	13	0	63
ASE_00170	RNaseP_bact_a links to Rfam database...	0.52	0.37	0.74	34	48782	12	0	12	0	59
ASE_00174	RNaseP_bact_a links to Rfam database...	0.30	0.23	0.39	25	61011	43	2	37	4	84
ASE_00179	RNaseP_bact_a links to Rfam database...	0.49	0.40	0.61	34	44197	22	0	22	0	50
ASE_00180	RNaseP_bact_a links to Rfam database...	0.70	0.55	0.90	55	51299	6	2	4	0	45
ASE_00182	RNaseP_bact_a links to Rfam database...	0.24	0.15	0.41	20	84206	31	1	28	2	116
ASE_00184	RNaseP_bact_a links to Rfam database...	0.58	0.42	0.80	43	54561	11	2	9	0	59
ASE_00185	RNaseP_bact_a links to Rfam database...	0.28	0.16	0.48	21	73492	23	0	23	0	107
ASE_00186	RNaseP_bact_a links to Rfam database...	0.61	0.45	0.84	59	78933	11	1	10	0	73
ASE_00190	RNaseP_bact_b links to Rfam database...	0.38	0.22	0.67	20	45421	12	0	10	2	70
ASE_00212	RNaseP_bact_a links to Rfam database...	0.55	0.39	0.78	58	93887	16	1	15	0	90
ASE_00214	RNaseP_bact_a links to Rfam database...	0.40	0.27	0.58	28	56232	21	1	19	1	75
ASE_00215	RNaseP_bact_a links to Rfam database...	0.46	0.31	0.69	31	48471	14	4	10	0	68
ASE_00217	RNaseP_bact_a links to Rfam database...	0.66	0.50	0.87	45	40418	7	1	6	0	45
ASE_00221	RNaseP_bact_a links to Rfam database...	0.58	0.44	0.78	51	64555	14	0	14	0	66
ASE_00228	RNaseP_bact_a links to Rfam database...	0.53	0.44	0.63	38	46911	23	1	21	1	48
ASE_00229	RNaseP_bact_a links to Rfam database...	0.61	0.48	0.76	42	42431	13	3	10	0	45
ASE_00238	RNaseP_bact_a links to Rfam database...	0.45	0.30	0.68	34	64211	16	2	14	0	80
ASE_00241	RNaseP_bact_a links to Rfam database...	0.66	0.55	0.79	48	43895	16	2	11	3	39
ASE_00248	RNaseP_bact_a links to Rfam database...	0.76	0.63	0.91	72	62402	7	0	7	0	42
ASE_00255	RNaseP_bact_a links to Rfam database...	0.53	0.39	0.72	51	74620	21	1	19	1	79
ASE_00257	RNaseP_bact_a links to Rfam database...	0.55	0.43	0.69	42	50979	19	0	19	0	55
ASE_00267	RNaseP_bact_a links to Rfam database...	0.76	0.61	0.95	54	45093	4	2	1	1	34
ASE_00270	RNaseP_bact_a links to Rfam database...	0.21	0.14	0.32	18	72333	41	0	39	2	110
ASE_00279	RNaseP_bact_a links to Rfam database...	0.63	0.48	0.84	48	53244	9	1	8	0	53
ASE_00280	RNaseP_bact_a links to Rfam database...	0.67	0.54	0.84	53	51940	10	3	7	0	45
ASE_00281	RNaseP_bact_a links to Rfam database...	0.74	0.60	0.91	53	44493	5	0	5	0	35
ASE_00283	RNaseP_bact_a links to Rfam database...	0.55	0.41	0.73	44	61716	16	0	16	0	63
ASE_00285	RNaseP_bact_a links to Rfam database...	0.45	0.33	0.62	40	68941	25	1	24	0	82
ASE_00292	RNaseP_bact_a links to Rfam database...	0.52	0.36	0.74	50	81742	18	1	17	0	88
ASE_00294	RNaseP_bact_a links to Rfam database...	0.55	0.37	0.83	63	114405	14	4	9	1	108
ASE_00297	RNaseP_bact_a links to Rfam database...	0.59	0.41	0.85	40	52928	10	0	7	3	58
ASE_00298	RNaseP_bact_a links to Rfam database...	0.22	0.15	0.32	17	67475	36	4	32	0	96
ASE_00305	RNaseP_bact_b links to Rfam database...	0.62	0.51	0.75	43	54558	21	1	13	7	42
ASE_00318	RNaseP_bact_b links to Rfam database...	0.66	0.49	0.89	58	80135	16	2	5	9	60
ASE_00321	RNaseP_bact_b links to Rfam database...	0.66	0.52	0.84	46	54560	18	1	8	9	42
ASE_00328	RNaseP_bact_b links to Rfam database...	0.59	0.48	0.72	54	72696	27	5	16	6	58
ASE_00332	RNaseP_bact_a links to Rfam database...	0.63	0.47	0.83	65	81732	13	2	11	0	73
ASE_00335	RNaseP_bact_b links to Rfam database...	0.60	0.48	0.76	56	75392	19	5	13	1	60
ASE_00340	RNaseP_bact_a links to Rfam database...	0.45	0.34	0.60	29	46008	22	3	16	3	56
ASE_00353	RNaseP_bact_a links to Rfam database...	0.50	0.35	0.71	37	57918	15	0	15	0	70
ASE_00361	RNaseP_bact_a links to Rfam database...	0.57	0.39	0.82	50	75405	11	1	10	0	77
ASE_00362	RNaseP_bact_a links to Rfam database...	0.56	0.38	0.81	35	48162	12	0	8	4	56
ASE_00363	RNaseP_bact_a links to Rfam database...	0.61	0.44	0.85	41	51312	7	0	7	0	53
ASE_00364	RNaseP_bact_a links to Rfam database...	0.58	0.38	0.89	40	54240	5	0	5	0	65
ASE_00366	RNaseP_bact_a links to Rfam database...	0.49	0.36	0.67	35	58601	19	0	17	2	63
ASE_00367	RNaseP_bact_a links to Rfam database...	0.71	0.57	0.89	49	43016	6	2	4	0	37
ASE_00372	RNaseP_bact_a links to Rfam database...	0.40	0.31	0.53	31	51944	28	3	25	0	69
ASE_00376	RNaseP_bact_a links to Rfam database...	0.57	0.40	0.82	42	56902	9	2	7	0	63
ASE_00382	RNaseP_bact_a links to Rfam database...	0.65	0.51	0.83	43	41853	9	2	7	0	41
ASE_00384	RNaseP_bact_a links to Rfam database...	0.59	0.43	0.80	40	48466	10	2	8	0	52
ASE_00386	RNaseP_bact_a links to Rfam database...	0.54	0.36	0.80	35	50359	9	1	8	0	61
ASE_00387	RNaseP_bact_a links to Rfam database...	0.64	0.45	0.90	47	55893	5	0	5	0	57
ASE_00388	RNaseP_bact_a links to Rfam database...	0.53	0.38	0.72	34	45706	16	1	12	3	55
ASE_00390	RNaseP_bact_a links to Rfam database...	0.77	0.64	0.93	54	42137	6	1	3	2	31
ASE_00393	RNaseP_bact_a links to Rfam database...	0.55	0.41	0.73	38	47843	15	3	11	1	55
ASE_00394	RNaseP_bact_a links to Rfam database...	0.56	0.41	0.78	38	46922	11	1	10	0	55
ASE_00395	RNaseP_bact_a links to Rfam database...	0.68	0.51	0.90	43	41568	5	0	5	0	41
ASE_00396	RNaseP_bact_a links to Rfam database...	0.62	0.47	0.81	39	41568	9	0	9	0	44
ASE_00397	RNaseP_bact_a links to Rfam database...	0.63	0.45	0.89	47	54562	9	1	5	3	58
ASE_00398	RNaseP_bact_a links to Rfam database...	0.49	0.32	0.75	33	55901	12	0	11	1	71
ASE_00400	RNaseP_bact_a links to Rfam database...	0.47	0.36	0.61	38	57908	25	3	21	1	68
ASE_00402	RNaseP_bact_a links to Rfam database...	0.55	0.35	0.86	30	42451	5	2	3	0	55
ASE_00404	RNaseP_bact_a links to Rfam database...	0.72	0.55	0.94	47	43021	4	0	3	1	38
ASE_00406	RNaseP_bact_a links to Rfam database...	0.60	0.44	0.84	41	48779	8	0	8	0	53
ASE_00411	RNaseP_bact_a links to Rfam database...	0.59	0.39	0.88	35	49415	5	0	5	0	54
ASE_00412	RNaseP_bact_a links to Rfam database...	0.51	0.32	0.79	34	58268	11	0	9	2	71
ASE_00416	RNaseP_bact_a links to Rfam database...	0.45	0.33	0.62	42	77353	26	1	25	0	85
ASE_00419	RNaseP_bact_a links to Rfam database...	0.49	0.33	0.74	34	54900	12	2	10	0	69
ASE_00422	RNaseP_bact_a links to Rfam database...	0.50	0.35	0.70	33	46924	14	0	14	0	61
ASE_00423	RNaseP_bact_a links to Rfam database...	0.65	0.53	0.79	58	56880	15	0	15	0	51
ASE_00427	RNaseP_nuc links to Rfam database...	0.42	0.43	0.41	20	40706	41	10	19	12	26
ASE_00428	RNaseP_bact_a links to Rfam database...	0.47	0.34	0.67	42	76573	21	4	17	0	83
ASE_00430	RNaseP_bact_a links to Rfam database...	0.50	0.37	0.68	36	46918	17	0	17	0	61
ASE_00437	RNaseP_bact_a links to Rfam database...	0.42	0.32	0.56	43	79324	34	3	31	0	92
ASE_00448	RNaseP_bact_a links to Rfam database...	0.63	0.49	0.82	55	64194	12	3	9	0	57
ASE_00451	RNaseP_bact_a links to Rfam database...	0.56	0.41	0.76	51	70809	16	1	15	0	74
CRW_00177	SSU_rRNA_bacteria links to Rfam database...	0.75	0.70	0.81	330	1178473	93	14	63	16	143
CRW_00250	SSU_rRNA_bacteria links to Rfam database...	0.75	0.68	0.84	325	1198537	73	14	50	9	153
CRW_00278	SSU_rRNA_bacteria links to Rfam database...	0.75	0.67	0.83	302	1129893	75	12	49	14	148
CRW_00280	SSU_rRNA_bacteria links to Rfam database...	0.78	0.72	0.85	328	1117874	75	11	47	17	125
CRW_00330	SSU_rRNA_eukarya links to Rfam database...	0.39	0.31	0.49	160	1988690	189	26	139	24	357
CRW_00411	SSU_rRNA_eukarya links to Rfam database...	0.31	0.25	0.40	122	1615195	206	23	163	20	374
CRW_00414	SSU_rRNA_eukarya links to Rfam database...	0.33	0.29	0.36	146	1665818	288	38	223	27	349
CRW_00548	5S_rRNA links to Rfam database...	0.74	0.58	0.96	22	7358	3	0	1	2	16
CRW_00552	5S_rRNA links to Rfam database...	0.83	0.69	1.00	27	7113	1	0	0	1	12
CRW_00555	5S_rRNA links to Rfam database...	0.87	0.75	1.00	30	7596	2	0	0	2	10
CRW_00567	5S_rRNA links to Rfam database...	0.87	0.75	1.00	30	7473	0	0	0	0	10
CRW_00570	5S_rRNA links to Rfam database...	0.81	0.70	0.93	26	6875	3	0	2	1	11
CRW_00573	5S_rRNA links to Rfam database...	0.87	0.75	1.00	30	7110	1	0	0	1	10
CRW_00789	SSU_rRNA_bacteria links to Rfam database...	0.78	0.71	0.86	318	1137416	79	8	44	27	129
CRW_01484	5S_rRNA links to Rfam database...	0.78	0.62	1.00	24	7479	0	0	0	0	15
CRW_01485	5S_rRNA links to Rfam database...	0.67	0.54	0.84	21	7478	4	0	4	0	18
CRW_01487	5S_rRNA links to Rfam database...	0.75	0.61	0.93	25	7476	2	0	2	0	16
CRW_01489	5S_rRNA links to Rfam database...	0.82	0.67	1.00	26	7477	0	0	0	0	13
CRW_01491	5S_rRNA links to Rfam database...	0.75	0.63	0.90	27	8355	3	0	3	0	16
CRW_01492	5S_rRNA links to Rfam database...	0.80	0.64	1.00	27	7599	0	0	0	0	15
CRW_01494	5S_rRNA links to Rfam database...	0.72	0.53	1.00	21	7119	1	0	0	1	19
CRW_01497	5S_rRNA links to Rfam database...	0.77	0.63	0.96	25	7114	2	0	1	1	15
CRW_01498	5S_rRNA links to Rfam database...	0.76	0.58	1.00	25	8103	0	0	0	0	18
CRW_01499	5S_rRNA links to Rfam database...	0.62	0.49	0.80	20	7976	5	0	5	0	21
CRW_01500	5S_rRNA links to Rfam database...	0.73	0.58	0.92	22	7726	2	0	2	0	16
CRW_01501	5S_rRNA links to Rfam database...	0.71	0.51	1.00	23	8492	0	0	0	0	22
CRW_01508	5S_rRNA links to Rfam database...	0.77	0.62	0.96	26	7974	1	0	1	0	16
CRW_01532	5S_rRNA links to Rfam database...	0.87	0.81	0.94	30	7108	5	0	2	3	7
CRW_01533	5S_rRNA links to Rfam database...	0.80	0.65	1.00	24	7116	1	0	0	1	13
CRW_01534	5S_rRNA links to Rfam database...	0.86	0.78	0.94	29	7109	5	0	2	3	8
CRW_01535	5S_rRNA links to Rfam database...	0.75	0.57	1.00	21	7119	3	0	0	3	16
CRW_01536	5S_rRNA links to Rfam database...	0.91	0.84	1.00	31	6990	1	0	0	1	6
CRW_01537	5S_rRNA links to Rfam database...	0.92	0.89	0.94	33	7105	5	0	2	3	4
CRW_01539	5S_rRNA links to Rfam database...	0.90	0.86	0.94	32	7106	5	0	2	3	5
CRW_01540	5S_rRNA links to Rfam database...	0.90	0.86	0.94	32	7106	5	0	2	3	5
CRW_01541	5S_rRNA links to Rfam database...	0.68	0.51	0.90	19	7119	4	0	2	2	18
CRW_01542	5S_rRNA links to Rfam database...	0.89	0.84	0.94	31	7107	5	0	2	3	6
CRW_01544	5S_rRNA links to Rfam database...	0.67	0.59	0.76	22	7111	8	0	7	1	15
CRW_01548	5S_rRNA links to Rfam database...	0.92	0.89	0.94	33	6986	5	0	2	3	4
CRW_01555	5S_rRNA links to Rfam database...	0.90	0.86	0.94	32	9011	3	0	2	1	5
CRW_01556	5S_rRNA links to Rfam database...	0.80	0.73	0.87	27	7109	7	0	4	3	10
CRW_01557	5S_rRNA links to Rfam database...	0.92	0.89	0.94	33	7105	6	0	2	4	4
CRW_01559	5S_rRNA links to Rfam database...	0.90	0.86	0.94	32	7226	5	0	2	3	5
CRW_01562	5S_rRNA links to Rfam database...	0.76	0.62	0.92	23	7115	5	0	2	3	14
CRW_01563	5S_rRNA links to Rfam database...	0.87	0.81	0.94	30	6871	5	0	2	3	7
CRW_01566	5S_rRNA links to Rfam database...	0.75	0.57	1.00	21	7119	0	0	0	0	16
CRW_01568	5S_rRNA links to Rfam database...	0.78	0.70	0.87	26	7110	5	0	4	1	11
CRW_01569	5S_rRNA links to Rfam database...	0.84	0.76	0.93	28	7110	3	0	2	1	9
CRW_01570	5S_rRNA links to Rfam database...	0.88	0.78	1.00	29	7111	2	0	0	2	8
CRW_01572	5S_rRNA links to Rfam database...	0.90	0.86	0.94	32	6987	6	0	2	4	5
CRW_01573	5S_rRNA links to Rfam database...	0.87	0.81	0.94	30	7228	3	0	2	1	7
CRW_01578	5S_rRNA links to Rfam database...	0.89	0.84	0.94	31	7107	5	0	2	3	6
CRW_01580	5S_rRNA links to Rfam database...	0.89	0.84	0.94	31	7107	3	0	2	1	6
CRW_01581	5S_rRNA links to Rfam database...	0.88	0.78	1.00	29	7111	1	0	0	1	8
CRW_01583	5S_rRNA links to Rfam database...	0.87	0.81	0.94	30	7108	5	0	2	3	7
CRW_01584	5S_rRNA links to Rfam database...	0.82	0.68	1.00	25	7115	1	0	0	1	12
CRW_01590	5S_rRNA links to Rfam database...	0.72	0.57	0.91	21	7117	5	0	2	3	16
CRW_01593	5S_rRNA links to Rfam database...	0.87	0.81	0.94	30	7108	3	0	2	1	7
CRW_01595	5S_rRNA links to Rfam database...	0.89	0.84	0.94	31	8482	5	0	2	3	6
CRW_01599	5S_rRNA links to Rfam database...	0.89	0.84	0.94	31	7107	5	0	2	3	6
CRW_01603	5S_rRNA links to Rfam database...	0.85	0.73	1.00	27	7113	2	0	0	2	10
CRW_01605	5S_rRNA links to Rfam database...	0.80	0.76	0.85	28	7107	8	0	5	3	9
CRW_01606	5S_rRNA links to Rfam database...	0.64	0.51	0.79	19	7116	7	0	5	2	18
CRW_01608	5S_rRNA links to Rfam database...	0.86	0.78	0.94	29	8354	3	0	2	1	8
CRW_01616	5S_rRNA links to Rfam database...	0.93	0.86	1.00	32	7108	1	0	0	1	5
CRW_01617	5S_rRNA links to Rfam database...	0.84	0.76	0.93	28	7110	5	0	2	3	9
CRW_01620	5S_rRNA links to Rfam database...	0.93	0.86	1.00	32	6989	3	0	0	3	5
CRW_01621	5S_rRNA links to Rfam database...	0.67	0.54	0.83	20	7116	6	0	4	2	17
CRW_01623	5S_rRNA links to Rfam database...	0.90	0.86	0.94	32	7106	3	0	2	1	5
CRW_01625	5S_rRNA links to Rfam database...	0.67	0.59	0.76	22	7111	9	0	7	2	15
PDB_00012	mir-TAR links to Rfam database...	1.00	1.00	1.00	7	399	1	0	0	1	0
PDB_00070	tRNA links to Rfam database...	0.76	0.71	0.81	17	2829	4	0	4	0	7
PDB_00213	Gammaretro_CES links to Rfam database...	0.73	0.59	0.92	24	5024	2	0	2	0	17
PDB_00229	tRNA links to Rfam database...	0.67	0.61	0.74	14	2756	5	0	5	0	9
PDB_00327	tRNA links to Rfam database...	0.93	0.87	1.00	20	3061	0	0	0	0	3
PDB_00362	tRNA links to Rfam database...	0.84	0.82	0.86	18	2829	3	0	3	0	4
PDB_00402	tRNA links to Rfam database...	0.91	0.87	0.95	20	2754	1	0	1	0	3
PDB_00431	tRNA links to Rfam database...	0.95	0.90	1.00	18	2193	0	0	0	0	2
PDB_00474	tRNA links to Rfam database...	0.83	0.70	1.00	16	2685	0	0	0	0	7
PDB_00553	mir-TAR links to Rfam database...	0.53	0.36	0.80	4	460	1	0	1	0	7
PDB_00571	tRNA links to Rfam database...	0.59	0.52	0.68	13	3302	7	0	6	1	12
PDB_00667	tRNA links to Rfam database...	0.88	0.86	0.90	19	2829	2	0	2	0	3
PDB_00741	Entero_5_CRE links to Rfam database...	0.72	0.53	1.00	9	694	0	0	0	0	8
PDB_00810	s2m links to Rfam database...	0.41	0.35	0.50	6	1069	7	0	6	1	11
PDB_00828	Purine links to Rfam database...	0.84	0.70	1.00	19	2466	0	0	0	0	8
PDB_00829	Purine links to Rfam database...	0.82	0.67	1.00	16	2262	0	0	0	0	8
PDB_00876	HIV_FE links to Rfam database...	0.45	0.40	0.53	8	975	7	0	7	0	12
PDB_01002	tRNA links to Rfam database...	0.79	0.71	0.88	15	2758	4	0	2	2	6
PDB_01020	Purine links to Rfam database...	0.83	0.70	1.00	16	2262	0	0	0	0	7
PDB_01050	UnaL2 links to Rfam database...	0.68	0.46	1.00	6	624	2	0	0	2	7
PDB_01053	tRNA links to Rfam database...	1.00	1.00	1.00	16	1362	0	0	0	0	0
PDB_01073	SAM links to Rfam database...	0.66	0.44	1.00	15	4356	1	0	0	1	19
PDB_01105	SSU_rRNA_bacteria links to Rfam database...	0.73	0.62	0.86	337	1433581	81	3	50	28	203
PDB_01114	TPP links to Rfam database...	0.77	0.59	1.00	16	2834	0	0	0	0	11
PDB_01152	HIV_FS2 links to Rfam database...	0.76	0.64	0.90	9	551	1	0	1	0	5
PDB_01236	ykoK links to Rfam database...	0.71	0.52	0.97	28	11599	3	0	1	2	26
RFA_00389	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	2	0	0	2	1
RFA_00390	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	3	0	0	3	1
RFA_00391	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	2	0	0	2	1
RFA_00396	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	2	0	0	2	1
RFA_00402	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	2	0	0	2	1
RFA_00409	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	2	0	0	2	1
RFA_00416	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1471	2	0	0	2	1
RFA_00433	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00434	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	2	0	0	2	1
RFA_00436	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	1	0	0	1	1
RFA_00440	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1471	3	0	0	3	1
RFA_00442	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	2	0	0	2	1
RFA_00444	Hammerhead_3 links to Rfam database...	0.82	0.67	1.00	10	1530	2	0	0	2	5
RFA_00583	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4935	7	0	0	7	0
RFA_00584	Y_RNA links to Rfam database...	0.93	0.87	1.00	13	2913	1	0	0	1	2
RFA_00585	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4836	0	0	0	0	0
RFA_00586	Y_RNA links to Rfam database...	0.86	0.73	1.00	11	3905	2	0	0	2	4
RFA_00587	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4836	7	0	0	7	0
RFA_00588	Y_RNA links to Rfam database...	0.97	0.93	1.00	14	4546	10	0	0	10	1
RFA_00589	Y_RNA links to Rfam database...	0.93	0.87	1.00	13	4358	0	0	0	0	2
RFA_00594	Y_RNA links to Rfam database...	0.89	0.80	1.00	12	2763	1	0	0	1	3
RFA_00596	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	5980	17	0	0	17	0
RFA_00599	Telomerase-vert links to Rfam database...	0.44	0.34	0.58	38	101409	33	1	27	5	73
RFA_00601	Telomerase-vert links to Rfam database...	0.31	0.23	0.42	26	99173	43	3	33	7	88
RFA_00602	Telomerase-vert links to Rfam database...	0.24	0.16	0.35	19	101421	41	2	33	6	97
RFA_00658	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	1128	0	0	0	0	14
RFA_00664	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	990	0	0	0	0	14
RFA_00667	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	990	0	0	0	0	14
RFA_00668	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	990	0	0	0	0	14
RFA_00672	Hammerhead_1 links to Rfam database...	0.55	0.31	1.00	4	899	0	0	0	0	9
RFA_00673	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	1128	0	0	0	0	14
RFA_00674	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	1128	0	0	0	0	14
RFA_00675	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	990	0	0	0	0	14
RFA_00677	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	990	0	0	0	0	14
RFA_00678	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	946	0	0	0	0	14
RFA_00680	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	1128	0	0	0	0	14
RFA_00704	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	990	0	0	0	0	14
RFA_00707	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	1035	0	0	0	0	14
RFA_00715	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	946	0	0	0	0	14
RFA_00717	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	903	0	0	0	0	14
RFA_00730	s2m links to Rfam database...	0.75	0.75	0.75	9	891	4	0	3	1	3
RFA_00731	s2m links to Rfam database...	0.91	0.83	1.00	10	893	0	0	0	0	2
RFA_00733	s2m links to Rfam database...	1.00	1.00	1.00	12	891	0	0	0	0	0
RFA_00734	s2m links to Rfam database...	0.75	0.75	0.75	9	891	4	0	3	1	3
RFA_00736	s2m links to Rfam database...	1.00	1.00	1.00	12	891	0	0	0	0	0
RFA_00737	s2m links to Rfam database...	0.75	0.75	0.75	9	891	4	0	3	1	3
RFA_00745	s2m links to Rfam database...	0.75	0.75	0.75	9	934	4	0	3	1	3
RFA_00749	s2m links to Rfam database...	0.75	0.75	0.75	9	891	4	0	3	1	3
RFA_00758	s2m links to Rfam database...	0.75	0.75	0.75	9	891	5	0	3	2	3
RFA_00762	s2m links to Rfam database...	1.00	1.00	1.00	12	891	0	0	0	0	0
RFA_00763	s2m links to Rfam database...	1.00	1.00	1.00	12	891	1	0	0	1	0
RFA_00764	s2m links to Rfam database...	1.00	1.00	1.00	12	891	0	0	0	0	0
RFA_00765	s2m links to Rfam database...	0.75	0.75	0.75	9	891	4	0	3	1	3
RFA_00786	Gammaretro_CES links to Rfam database...	0.83	0.75	0.92	24	5024	2	0	2	0	8
RFA_00791	Gammaretro_CES links to Rfam database...	0.83	0.75	0.92	24	5125	2	0	2	0	8
RFA_00792	Gammaretro_CES links to Rfam database...	0.83	0.75	0.92	24	5024	2	0	2	0	8
RFA_00801	Gammaretro_CES links to Rfam database...	0.80	0.72	0.88	23	5024	3	0	3	0	9
SPR_00007	tRNA links to Rfam database...	0.81	0.81	0.81	17	2829	4	0	4	0	4
SPR_00009	tRNA links to Rfam database...	0.72	0.70	0.74	14	2831	5	0	5	0	6
SPR_00010	tRNA links to Rfam database...	0.86	0.86	0.86	18	2829	3	0	3	0	3
SPR_00012	tRNA links to Rfam database...	0.82	0.80	0.84	16	2831	4	0	3	1	4
SPR_00013	tRNA links to Rfam database...	0.77	0.75	0.79	15	2831	5	0	4	1	5
SPR_00016	tRNA links to Rfam database...	0.81	0.81	0.81	17	2829	4	0	4	0	4
SPR_00017	tRNA links to Rfam database...	0.70	0.67	0.74	14	2831	5	0	5	0	7
SPR_00025	tRNA links to Rfam database...	0.90	0.90	0.90	18	2906	3	0	2	1	2
SPR_00026	tRNA links to Rfam database...	0.81	0.81	0.81	17	2905	4	0	4	0	4
SPR_00027	tRNA links to Rfam database...	0.90	0.90	0.90	19	2905	2	0	2	0	2
SPR_00036	tRNA links to Rfam database...	0.78	0.70	0.88	14	2759	3	0	2	1	6
SPR_00045	tRNA links to Rfam database...	0.86	0.82	0.90	18	2830	2	0	2	0	4
SPR_00064	tRNA links to Rfam database...	0.62	0.52	0.73	11	2835	4	0	4	0	10
SPR_00065	tRNA links to Rfam database...	0.65	0.57	0.75	12	2834	4	0	4	0	9
SPR_00066	tRNA links to Rfam database...	0.90	0.90	0.90	19	2829	2	0	2	0	2
SPR_00068	tRNA links to Rfam database...	0.90	0.90	0.90	19	2829	2	0	2	0	2
SPR_00070	tRNA links to Rfam database...	0.86	0.86	0.86	18	2829	3	0	3	0	3
SPR_00074	tRNA links to Rfam database...	0.92	0.90	0.95	18	2831	3	0	1	2	2
SPR_00079	tRNA links to Rfam database...	0.79	0.63	1.00	12	2473	0	0	0	0	7
SPR_00086	tRNA links to Rfam database...	0.88	0.86	0.90	18	2830	2	0	2	0	3
SPR_00087	tRNA links to Rfam database...	0.87	0.85	0.89	17	2831	3	0	2	1	3
SPR_00088	tRNA links to Rfam database...	0.82	0.80	0.84	16	2831	4	0	3	1	4
SPR_00089	tRNA links to Rfam database...	0.82	0.80	0.84	16	2831	4	0	3	1	4
SPR_00090	tRNA links to Rfam database...	0.87	0.85	0.89	17	2831	3	0	2	1	3
SPR_00091	tRNA links to Rfam database...	0.87	0.85	0.89	17	2831	3	0	2	1	3
SPR_00095	tRNA links to Rfam database...	0.90	0.90	0.90	19	2829	2	0	2	0	2
SPR_00111	tRNA links to Rfam database...	0.87	0.76	1.00	16	2685	0	0	0	0	5
SPR_00112	tRNA links to Rfam database...	0.84	0.71	1.00	15	2686	0	0	0	0	6
SPR_00115	tRNA links to Rfam database...	0.87	0.76	1.00	16	2685	0	0	0	0	5
SPR_00117	tRNA links to Rfam database...	0.86	0.86	0.86	18	2829	3	0	3	0	3
SPR_00139	tRNA links to Rfam database...	0.83	0.81	0.85	17	2906	4	0	3	1	4
SPR_00153	tRNA links to Rfam database...	0.90	0.90	0.90	19	2905	2	0	2	0	2
SPR_00155	tRNA links to Rfam database...	0.86	0.86	0.86	18	2905	3	0	3	0	3
SPR_00156	tRNA links to Rfam database...	0.90	0.90	0.90	19	2905	2	0	2	0	2
SPR_00176	tRNA links to Rfam database...	0.90	0.90	0.90	18	2830	3	0	2	1	2
SPR_00177	tRNA links to Rfam database...	0.86	0.86	0.86	18	2829	3	0	3	0	3
SPR_00178	tRNA links to Rfam database...	0.90	0.90	0.90	19	2829	2	0	2	0	2
SPR_00191	tRNA links to Rfam database...	0.84	0.71	1.00	15	2835	0	0	0	0	6
SPR_00200	tRNA links to Rfam database...	0.83	0.81	0.85	17	2830	3	0	3	0	4
SPR_00224	tRNA links to Rfam database...	0.85	0.85	0.85	17	3721	3	0	3	0	3
SPR_00271	tRNA links to Rfam database...	0.90	0.90	0.90	19	2829	2	0	2	0	2
SPR_00273	tRNA links to Rfam database...	0.86	0.86	0.86	18	2829	3	0	3	0	3
SPR_00276	tRNA links to Rfam database...	0.95	0.90	1.00	19	2907	0	0	0	0	2
SPR_00277	tRNA links to Rfam database...	0.98	0.95	1.00	20	2906	0	0	0	0	1
SPR_00294	tRNA links to Rfam database...	0.86	0.86	0.86	18	2829	3	0	3	0	3
SPR_00295	tRNA links to Rfam database...	0.86	0.86	0.86	18	2754	3	0	3	0	3
SPR_00314	tRNA links to Rfam database...	0.90	0.90	0.90	19	2905	2	0	2	0	2
SPR_00315	tRNA links to Rfam database...	0.90	0.90	0.90	19	2905	2	0	2	0	2
SPR_00317	tRNA links to Rfam database...	0.97	0.95	1.00	19	2907	1	0	0	1	1
SPR_00318	tRNA links to Rfam database...	0.90	0.90	0.90	19	2905	2	0	2	0	2
SPR_00321	tRNA links to Rfam database...	0.90	0.90	0.90	19	2982	2	0	2	0	2
SPR_00333	tRNA links to Rfam database...	0.88	0.86	0.90	18	2755	2	0	2	0	3
SPR_00352	tRNA links to Rfam database...	0.86	0.86	0.86	18	2905	3	0	3	0	3
SPR_00353	tRNA links to Rfam database...	0.90	0.90	0.90	19	2829	2	0	2	0	2
SPR_00357	tRNA links to Rfam database...	0.90	0.90	0.90	19	2905	2	0	2	0	2
SPR_00358	tRNA links to Rfam database...	0.90	0.90	0.90	18	2906	3	0	2	1	2
SPR_00370	tRNA links to Rfam database...	0.95	0.90	1.00	19	2756	0	0	0	0	2
SPR_00386	tRNA links to Rfam database...	0.90	0.90	0.90	18	4166	2	0	2	0	2
SPR_00414	tRNA links to Rfam database...	0.81	0.81	0.81	17	3549	4	0	4	0	4
SPR_00415	tRNA links to Rfam database...	0.77	0.71	0.83	15	3552	7	0	3	4	6
SPR_00417	tRNA links to Rfam database...	0.70	0.64	0.78	14	3552	8	0	4	4	8
SPR_00418	tRNA links to Rfam database...	0.75	0.68	0.83	15	3552	7	0	3	4	7
SPR_00434	tRNA links to Rfam database...	0.70	0.67	0.74	14	2831	5	0	5	0	7
SPR_00435	tRNA links to Rfam database...	0.86	0.86	0.86	18	2829	3	0	3	0	3
SPR_00436	tRNA links to Rfam database...	0.70	0.67	0.74	14	2831	5	0	5	0	7
SPR_00437	tRNA links to Rfam database...	0.61	0.57	0.67	12	2757	6	0	6	0	9
SPR_00438	tRNA links to Rfam database...	0.95	0.90	1.00	19	2756	0	0	0	0	2
SPR_00452	tRNA links to Rfam database...	0.71	0.62	0.81	13	2834	3	0	3	0	8
SPR_00455	tRNA links to Rfam database...	0.90	0.90	0.90	19	2829	2	0	2	0	2
SPR_00456	tRNA links to Rfam database...	0.81	0.81	0.81	17	2829	4	0	4	0	4
SPR_00476	tRNA links to Rfam database...	0.85	0.81	0.89	17	2756	2	0	2	0	4
SPR_00479	tRNA links to Rfam database...	0.90	0.90	0.90	19	2829	2	0	2	0	2
SPR_00482	tRNA links to Rfam database...	0.98	0.95	1.00	20	2681	0	0	0	0	1
SPR_00483	tRNA links to Rfam database...	0.74	0.67	0.82	14	2833	3	0	3	0	7
SPR_00487	tRNA links to Rfam database...	0.64	0.55	0.75	12	2685	4	0	4	0	10
SPR_00493	tRNA links to Rfam database...	0.78	0.73	0.84	16	2756	3	0	3	0	6
SPR_00496	tRNA links to Rfam database...	0.88	0.86	0.90	18	2755	2	0	2	0	3
SPR_00497	tRNA links to Rfam database...	0.85	0.81	0.89	17	2756	2	0	2	0	4
SPR_00502	tRNA links to Rfam database...	0.98	0.95	1.00	20	2906	0	0	0	0	1
SPR_00504	tRNA links to Rfam database...	0.97	0.95	1.00	19	2831	0	0	0	0	1
SPR_00505	tRNA links to Rfam database...	0.97	0.95	1.00	19	2907	0	0	0	0	1
SPR_00506	tRNA links to Rfam database...	0.97	0.95	1.00	19	2907	0	0	0	0	1
SPR_00509	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00512	tRNA links to Rfam database...	0.97	0.95	1.00	19	2907	0	0	0	0	1
SPR_00513	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00518	tRNA links to Rfam database...	0.92	0.85	1.00	17	2909	0	0	0	0	3
SPR_00548	tRNA links to Rfam database...	0.83	0.81	0.85	17	3383	3	0	3	0	4
SPR_00557	tRNA links to Rfam database...	0.70	0.67	0.74	14	2831	5	0	5	0	7
SPR_00561	tRNA links to Rfam database...	0.71	0.62	0.81	13	2834	3	0	3	0	8
SPR_00590	tRNA links to Rfam database...	0.77	0.75	0.79	15	2984	4	0	4	0	5
SPR_00593	tRNA links to Rfam database...	0.81	0.79	0.83	15	2757	5	0	3	2	4
SPR_00595	tRNA links to Rfam database...	0.90	0.90	0.90	19	2754	2	0	2	0	2
SPR_00598	tRNA links to Rfam database...	0.88	0.86	0.90	18	2983	2	0	2	0	3
SPR_00610	tRNA links to Rfam database...	0.85	0.76	0.94	16	2539	1	0	1	0	5
SPR_00620	tRNA links to Rfam database...	0.76	0.67	0.88	14	2987	2	0	2	0	7
SPR_00721	tRNA links to Rfam database...	0.88	0.86	0.90	18	2906	2	0	2	0	3
SPR_00722	tRNA links to Rfam database...	0.90	0.90	0.90	18	2906	3	0	2	1	2
SPR_00758	tRNA links to Rfam database...	0.90	0.90	0.90	19	2982	2	0	2	0	2
SPR_00760	tRNA links to Rfam database...	0.85	0.81	0.89	17	3551	2	0	2	0	4
SPR_00777	tRNA links to Rfam database...	1.00	1.00	1.00	20	2608	1	0	0	1	0
SPR_00867	tRNA links to Rfam database...	0.81	0.81	0.81	17	2905	4	0	4	0	4
SPR_00868	tRNA links to Rfam database...	0.90	0.90	0.90	19	2905	2	0	2	0	2
SPR_00943	tRNA links to Rfam database...	1.00	1.00	1.00	20	2536	0	0	0	0	0
SPR_00957	tRNA links to Rfam database...	0.90	0.90	0.90	19	2982	2	0	2	0	2
SPR_01040	tRNA links to Rfam database...	0.85	0.81	0.89	17	2756	2	0	2	0	4
SPR_01088	tRNA links to Rfam database...	0.76	0.67	0.88	14	2910	2	0	2	0	7
SPR_01095	tRNA links to Rfam database...	0.71	0.62	0.81	13	2834	3	0	3	0	8
SPR_01106	tRNA links to Rfam database...	1.00	1.00	1.00	21	2535	0	0	0	0	0
SPR_01117	tRNA links to Rfam database...	0.82	0.67	1.00	14	2989	0	0	0	0	7
SPR_01157	tRNA links to Rfam database...	0.81	0.81	0.81	17	2754	4	0	4	0	4
SRP_00006	Metazoa_SRP links to Rfam database...	0.95	0.90	1.00	91	45662	4	0	0	4	10
SRP_00008	Bacteria_small_SRP links to Rfam database...	0.49	0.24	1.00	6	2920	0	0	0	0	19
SRP_00011	Plant_SRP links to Rfam database...	0.63	0.52	0.77	54	46290	18	0	16	2	50
SRP_00015	Plant_SRP links to Rfam database...	0.73	0.63	0.86	62	46288	17	0	10	7	37
SRP_00020	Bacteria_small_SRP links to Rfam database...	0.64	0.48	0.84	16	5546	3	1	2	0	17
SRP_00024	Bacteria_large_SRP links to Rfam database...	0.53	0.31	0.90	27	37645	3	0	3	0	60
SRP_00026	Bacteria_large_SRP links to Rfam database...	0.52	0.31	0.90	27	36826	4	0	3	1	61
SRP_00030	Bacteria_large_SRP links to Rfam database...	0.51	0.33	0.78	29	36819	8	4	4	0	59
SRP_00031	Bacteria_large_SRP links to Rfam database...	0.53	0.31	0.90	28	36284	4	0	3	1	61
SRP_00038	Bacteria_small_SRP links to Rfam database...	0.46	0.21	1.00	7	5043	0	0	0	0	26
SRP_00042	Bacteria_small_SRP links to Rfam database...	0.63	0.52	0.76	13	3988	4	1	3	0	12
SRP_00044	Bacteria_small_SRP links to Rfam database...	0.47	0.22	1.00	7	6098	0	0	0	0	25
SRP_00046	Bacteria_small_SRP links to Rfam database...	0.47	0.22	1.00	7	4746	0	0	0	0	25
SRP_00050	Metazoa_SRP links to Rfam database...	0.85	0.76	0.95	75	44771	7	0	4	3	24
SRP_00051	Bacteria_small_SRP links to Rfam database...	0.48	0.23	1.00	7	5453	0	0	0	0	23
SRP_00054	Bacteria_small_SRP links to Rfam database...	0.47	0.22	1.00	7	5558	0	0	0	0	25
SRP_00057	Bacteria_small_SRP links to Rfam database...	0.45	0.20	1.00	7	6321	0	0	0	0	28
SRP_00058	Bacteria_small_SRP links to Rfam database...	0.45	0.21	1.00	7	5771	0	0	0	0	27
SRP_00066	Metazoa_SRP links to Rfam database...	0.74	0.67	0.83	67	45370	17	5	9	3	33
SRP_00072	Bacteria_small_SRP links to Rfam database...	0.49	0.24	1.00	7	6321	0	0	0	0	22
SRP_00074	Bacteria_small_SRP links to Rfam database...	0.49	0.24	1.00	7	6548	0	0	0	0	22
SRP_00075	Bacteria_small_SRP links to Rfam database...	0.45	0.21	1.00	7	5558	0	0	0	0	27
SRP_00077	Bacteria_small_SRP links to Rfam database...	0.43	0.19	1.00	7	6663	0	0	0	0	30
SRP_00081	Bacteria_small_SRP links to Rfam database...	0.44	0.19	1.00	6	5559	0	0	0	0	25
SRP_00084	Bacteria_small_SRP links to Rfam database...	0.45	0.21	1.00	7	5453	0	0	0	0	27
SRP_00086	Metazoa_SRP links to Rfam database...	0.74	0.66	0.84	66	44174	13	7	6	0	34
SRP_00094	Bacteria_small_SRP links to Rfam database...	0.59	0.50	0.71	12	4078	5	1	4	0	12
SRP_00095	Bacteria_small_SRP links to Rfam database...	0.63	0.52	0.76	13	3988	4	1	3	0	12
SRP_00098	Bacteria_small_SRP links to Rfam database...	0.40	0.16	1.00	6	6435	0	0	0	0	31
SRP_00102	Metazoa_SRP links to Rfam database...	0.76	0.68	0.84	69	44469	16	1	12	3	32
SRP_00103	Metazoa_SRP links to Rfam database...	0.75	0.65	0.87	66	45375	12	1	9	2	36
SRP_00105	Bacteria_small_SRP links to Rfam database...	0.45	0.21	1.00	7	5558	0	0	0	0	27
SRP_00107	Bacteria_small_SRP links to Rfam database...	0.56	0.32	1.00	6	3649	0	0	0	0	13
SRP_00121	Bacteria_small_SRP links to Rfam database...	0.53	0.28	1.00	7	4271	0	0	0	0	18
SRP_00128	Bacteria_small_SRP links to Rfam database...	0.44	0.19	1.00	7	6779	0	0	0	0	29
SRP_00132	Bacteria_small_SRP links to Rfam database...	0.49	0.24	1.00	7	4844	0	0	0	0	22
SRP_00141	Bacteria_small_SRP links to Rfam database...	0.38	0.15	1.00	6	6322	0	0	0	0	35
SRP_00152	Plant_SRP links to Rfam database...	0.75	0.64	0.87	66	45677	14	5	5	4	37
SRP_00161	Bacteria_small_SRP links to Rfam database...	0.52	0.27	1.00	6	2844	0	0	0	0	16
SRP_00162	Bacteria_small_SRP links to Rfam database...	0.55	0.30	1.00	7	2919	0	0	0	0	16
SRP_00163	Bacteria_small_SRP links to Rfam database...	0.52	0.27	1.00	7	3479	0	0	0	0	19
SRP_00164	Bacteria_small_SRP links to Rfam database...	0.41	0.17	1.00	6	6897	0	0	0	0	29
SRP_00170	Bacteria_small_SRP links to Rfam database...	0.61	0.52	0.72	13	4077	6	2	3	1	12
SRP_00171	Metazoa_SRP links to Rfam database...	0.66	0.65	0.68	57	45367	35	6	21	8	31
SRP_00178	Plant_SRP links to Rfam database...	0.74	0.57	0.97	58	45693	3	0	2	1	44
SRP_00179	Plant_SRP links to Rfam database...	0.75	0.60	0.93	63	45988	9	0	5	4	42
SRP_00181	Plant_SRP links to Rfam database...	0.71	0.57	0.89	58	45991	9	0	7	2	44
SRP_00182	Plant_SRP links to Rfam database...	0.78	0.68	0.90	69	45979	9	0	8	1	32
SRP_00184	Plant_SRP links to Rfam database...	0.65	0.53	0.79	53	45989	17	0	14	3	47
SRP_00188	Plant_SRP links to Rfam database...	0.69	0.59	0.81	47	31067	12	1	10	1	32
SRP_00194	Bacteria_small_SRP links to Rfam database...	0.53	0.29	1.00	6	3234	0	0	0	0	15
SRP_00200	Bacteria_small_SRP links to Rfam database...	0.41	0.17	1.00	6	6897	0	0	0	0	30
SRP_00209	Bacteria_small_SRP links to Rfam database...	0.51	0.37	0.71	10	4642	5	1	3	1	17
SRP_00213	Bacteria_small_SRP links to Rfam database...	0.57	0.44	0.73	11	4171	4	1	3	0	14
SRP_00215	Bacteria_small_SRP links to Rfam database...	0.53	0.28	1.00	7	3233	0	0	0	0	18
SRP_00227	Bacteria_small_SRP links to Rfam database...	0.90	0.87	0.93	27	5122	5	1	1	3	4
SRP_00228	Metazoa_SRP links to Rfam database...	0.75	0.68	0.81	65	45371	19	1	14	4	30
SRP_00231	Bacteria_small_SRP links to Rfam database...	0.45	0.21	1.00	7	5453	0	0	0	0	27
SRP_00233	Bacteria_small_SRP links to Rfam database...	0.46	0.21	1.00	7	5144	0	0	0	0	26
SRP_00243	Bacteria_small_SRP links to Rfam database...	0.47	0.23	1.00	7	5144	0	0	0	0	24
SRP_00244	Bacteria_small_SRP links to Rfam database...	0.39	0.15	1.00	6	6897	1	0	0	1	33
SRP_00250	Bacteria_small_SRP links to Rfam database...	0.44	0.19	1.00	7	6779	0	0	0	0	29
SRP_00251	Bacteria_small_SRP links to Rfam database...	0.41	0.17	1.00	6	7015	1	0	0	1	30
SRP_00266	Bacteria_small_SRP links to Rfam database...	0.49	0.24	1.00	7	4649	0	0	0	0	22
SRP_00268	Bacteria_small_SRP links to Rfam database...	0.56	0.44	0.71	12	4169	5	1	4	0	15
SRP_00269	Bacteria_small_SRP links to Rfam database...	0.46	0.21	1.00	7	5043	0	0	0	0	26
SRP_00270	Bacteria_small_SRP links to Rfam database...	0.44	0.19	1.00	6	4650	1	0	0	1	25
SRP_00271	Bacteria_small_SRP links to Rfam database...	0.54	0.29	1.00	7	3233	0	0	0	0	17
SRP_00273	Bacteria_small_SRP links to Rfam database...	0.71	0.55	0.92	22	6762	2	1	1	0	18
SRP_00274	Bacteria_small_SRP links to Rfam database...	0.43	0.18	1.00	7	6896	0	0	0	0	31
SRP_00295	Bacteria_small_SRP links to Rfam database...	0.40	0.16	1.00	6	6897	1	0	0	1	32
SRP_00303	Bacteria_small_SRP links to Rfam database...	0.43	0.19	1.00	6	6664	1	0	0	1	26
SRP_00310	Bacteria_small_SRP links to Rfam database...	0.55	0.30	1.00	7	2919	0	0	0	0	16
SRP_00312	Bacteria_small_SRP links to Rfam database...	0.56	0.44	0.71	12	4169	6	1	4	1	15
SRP_00315	Bacteria_small_SRP links to Rfam database...	0.72	0.57	0.93	13	2912	1	0	1	0	10
SRP_00317	Metazoa_SRP links to Rfam database...	0.78	0.68	0.88	67	45074	14	0	9	5	31
SRP_00318	Bacteria_small_SRP links to Rfam database...	0.55	0.30	1.00	7	2996	0	0	0	0	16
SRP_00325	Bacteria_small_SRP links to Rfam database...	0.46	0.21	1.00	7	4364	0	0	0	0	26
SRP_00326	Bacteria_small_SRP links to Rfam database...	0.44	0.19	1.00	6	5044	1	0	0	1	25
SRP_00333	Bacteria_small_SRP links to Rfam database...	0.45	0.21	1.00	7	5144	0	0	0	0	27
SRP_00337	Bacteria_large_SRP links to Rfam database...	0.59	0.42	0.83	38	35465	9	0	8	1	53
SRP_00338	Bacteria_small_SRP links to Rfam database...	0.44	0.19	1.00	7	5453	0	0	0	0	29
SRP_00341	Bacteria_small_SRP links to Rfam database...	0.47	0.23	1.00	7	4746	0	0	0	0	24
SRP_00342	Bacteria_small_SRP links to Rfam database...	0.49	0.24	1.00	6	3999	0	0	0	0	19
SRP_00347	Metazoa_SRP links to Rfam database...	0.72	0.65	0.79	62	46587	23	1	15	7	34
SRP_00350	Bacteria_small_SRP links to Rfam database...	0.42	0.37	0.48	10	3895	11	1	10	0	17
SRP_00356	Bacteria_small_SRP links to Rfam database...	0.48	0.23	1.00	7	5043	0	0	0	0	23
SRP_00357	Bacteria_small_SRP links to Rfam database...	0.55	0.31	1.00	11	5345	0	0	0	0	25
SRP_00358	Bacteria_small_SRP links to Rfam database...	0.41	0.17	1.00	6	6322	0	0	0	0	29
SRP_00367	Bacteria_small_SRP links to Rfam database...	0.25	0.09	0.75	3	6782	2	0	1	1	32
SRP_00368	Metazoa_SRP links to Rfam database...	0.78	0.70	0.87	69	43877	14	1	9	4	29
SRP_00369	Bacteria_small_SRP links to Rfam database...	0.41	0.17	1.00	6	5772	0	0	0	0	29
SRP_00383	Bacteria_small_SRP links to Rfam database...	0.54	0.29	1.00	7	3233	0	0	0	0	17
TMR_00017	tmRNA links to Rfam database...	0.72	0.60	0.87	61	67091	13	0	9	4	41
TMR_00018	tmRNA links to Rfam database...	0.56	0.49	0.65	45	64551	29	6	18	5	47
TMR_00038	tmRNA links to Rfam database...	0.67	0.53	0.84	58	71184	13	5	6	2	52
TMR_00042	tmRNA links to Rfam database...	0.56	0.44	0.70	43	62774	19	1	17	1	55
TMR_00046	tmRNA links to Rfam database...	0.60	0.52	0.69	50	62763	23	6	16	1	46
TMR_00048	tmRNA links to Rfam database...	0.56	0.48	0.66	46	64910	29	9	15	5	49
TMR_00080	tmRNA links to Rfam database...	0.54	0.49	0.60	47	70422	35	12	19	4	49
TMR_00082	tmRNA links to Rfam database...	0.59	0.50	0.71	48	67828	25	7	13	5	48
TMR_00123	tmRNA links to Rfam database...	0.64	0.50	0.81	51	66367	17	3	9	5	50
TMR_00137	tmRNA links to Rfam database...	0.54	0.46	0.64	41	61011	28	5	18	5	48
TMR_00142	tmRNA links to Rfam database...	0.64	0.60	0.69	61	70788	34	12	15	7	41
TMR_00207	tmRNA links to Rfam database...	0.53	0.42	0.66	43	72325	26	4	18	4	60
TMR_00257	tmRNA links to Rfam database...	0.56	0.48	0.64	47	67088	29	4	22	3	51
TMR_00271	tmRNA links to Rfam database...	0.55	0.42	0.72	38	64208	20	1	14	5	53
TMR_00332	tmRNA links to Rfam database...	0.70	0.58	0.85	57	67094	16	0	10	6	42
TMR_00366	tmRNA links to Rfam database...	0.53	0.49	0.58	49	67811	43	8	28	7	51
TMR_00378	tmRNA links to Rfam database...	0.57	0.51	0.64	49	67820	37	9	18	10	48
TMR_00399	tmRNA links to Rfam database...	0.61	0.47	0.79	44	64924	18	2	10	6	50
TMR_00404	tmRNA links to Rfam database...	0.53	0.41	0.68	38	67472	21	8	10	3	54
TMR_00427	tmRNA links to Rfam database...	0.20	0.13	0.30	13	67485	30	4	26	0	84
TMR_00443	tmRNA links to Rfam database...	0.73	0.61	0.88	63	67089	13	0	9	4	41
TMR_00451	tmRNA links to Rfam database...	0.52	0.46	0.58	41	63475	36	8	22	6	48
TMR_00458	tmRNA links to Rfam database...	0.50	0.41	0.61	38	63484	29	4	20	5	55
TMR_00469	tmRNA links to Rfam database...	0.64	0.48	0.84	48	64563	10	3	6	1	52
TMR_00472	tmRNA links to Rfam database...	0.70	0.61	0.81	59	64547	15	8	6	1	38
TMR_00519	tmRNA links to Rfam database...	0.49	0.37	0.65	35	63136	23	2	17	4	60
TMR_00520	tmRNA links to Rfam database...	0.44	0.35	0.54	35	63125	36	5	25	6	64
TMR_00522	tmRNA links to Rfam database...	0.49	0.39	0.60	38	63127	29	8	17	4	59
TMR_00528	tmRNA links to Rfam database...	0.48	0.41	0.57	40	63120	36	7	23	6	57
TMR_00540	tmRNA links to Rfam database...	0.53	0.45	0.63	47	73461	28	8	20	0	57
TMR_00568	tmRNA links to Rfam database...	0.72	0.64	0.82	63	60649	18	3	11	4	36
TMR_00571	tmRNA links to Rfam database...	0.76	0.67	0.86	66	60649	15	2	9	4	33
TMR_00580	tmRNA links to Rfam database...	0.75	0.66	0.86	66	60649	15	2	9	4	34
TMR_00584	tmRNA links to Rfam database...	0.71	0.62	0.81	60	61001	17	4	10	3	37
TMR_00586	tmRNA links to Rfam database...	0.71	0.63	0.79	61	60998	20	5	11	4	36
TMR_00616	tmRNA links to Rfam database...	0.67	0.58	0.79	57	67089	16	6	9	1	42
TMR_00699	tmRNA links to Rfam database...	0.57	0.43	0.75	44	67102	19	1	14	4	58
TMR_00702	tmRNA links to Rfam database...	0.54	0.43	0.68	43	67098	25	3	17	5	57
TMR_00703	tmRNA links to Rfam database...	0.58	0.45	0.75	45	67468	19	3	12	4	54

^top

Performance of RNAfold - scored lower in this pairwise comparison

1. Total counts & total scores for RNAfold

Total Base Pair Counts
Total TP	16697
Total TN	24109427
Total FP	14829
Total FP CONTRA	2030
Total FP INCONS	11162
Total FP COMP	1637
Total FN	13776

Total Scores
MCC	0.553
Average MCC ± 95% Confidence Intervals	0.623 ± 0.022
Sensitivity	0.548
Positive Predictive Value	0.559
Nr of predictions	504

^top

2. Individual counts for RNAfold [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00004	RNaseP_bact_a links to Rfam database...	0.70	0.70	0.71	68	47799	30	9	19	2	29
ASE_00007	RNaseP_bact_a links to Rfam database...	0.57	0.55	0.60	60	59585	44	2	38	4	50
ASE_00018	RNaseP_bact_a links to Rfam database...	0.80	0.76	0.84	102	80479	22	3	17	2	32
ASE_00022	RNaseP_bact_b links to Rfam database...	0.46	0.44	0.48	55	82914	66	6	53	7	69
ASE_00028	RNaseP_bact_b links to Rfam database...	0.61	0.59	0.64	74	84550	51	9	33	9	52
ASE_00035	RNaseP_bact_a links to Rfam database...	0.30	0.28	0.32	33	70398	76	12	57	7	85
ASE_00040	RNaseP_bact_a links to Rfam database...	0.49	0.47	0.51	63	78879	67	5	56	6	70
ASE_00045	RNaseP_bact_b links to Rfam database...	0.65	0.66	0.65	53	47196	36	8	21	7	27
ASE_00064	RNaseP_bact_a links to Rfam database...	0.43	0.43	0.44	38	45364	53	5	44	4	51
ASE_00068	RNaseP_bact_a links to Rfam database...	0.51	0.48	0.53	41	37598	37	4	32	1	44
ASE_00075	RNaseP_bact_a links to Rfam database...	0.61	0.56	0.68	90	108678	49	3	40	6	72
ASE_00077	RNaseP_bact_a links to Rfam database...	0.51	0.51	0.52	44	45065	41	6	35	0	42
ASE_00078	RNaseP_bact_a links to Rfam database...	0.68	0.67	0.68	56	42989	31	5	21	5	27
ASE_00080	RNaseP_bact_a links to Rfam database...	0.47	0.45	0.49	55	71519	60	5	52	3	68
ASE_00081	RNaseP_bact_a links to Rfam database...	0.55	0.55	0.55	53	49674	44	5	38	1	44
ASE_00082	RNaseP_bact_a links to Rfam database...	0.57	0.54	0.61	63	70396	55	1	40	14	53
ASE_00083	RNaseP_bact_a links to Rfam database...	0.79	0.75	0.83	83	62381	23	2	15	6	27
ASE_00084	RNaseP_bact_a links to Rfam database...	0.70	0.69	0.72	68	53533	30	6	21	3	31
ASE_00087	RNaseP_bact_a links to Rfam database...	0.67	0.61	0.74	88	88291	36	6	25	5	56
ASE_00092	RNaseP_bact_a links to Rfam database...	0.73	0.71	0.75	80	63440	31	0	26	5	33
ASE_00104	RNaseP_bact_a links to Rfam database...	0.53	0.50	0.56	60	64153	49	6	42	1	59
ASE_00107	RNaseP_bact_a links to Rfam database...	0.40	0.39	0.42	49	73036	71	3	65	3	78
ASE_00114	RNaseP_bact_b links to Rfam database...	0.32	0.30	0.34	23	45384	55	6	38	11	54
ASE_00115	RNaseP_bact_a links to Rfam database...	0.47	0.46	0.48	46	54519	58	1	49	8	55
ASE_00119	RNaseP_bact_a links to Rfam database...	0.67	0.65	0.69	70	62734	33	1	30	2	38
ASE_00123	RNaseP_bact_a links to Rfam database...	0.56	0.54	0.59	46	38425	37	2	30	5	39
ASE_00135	RNaseP_bact_a links to Rfam database...	0.46	0.45	0.47	49	63085	60	8	48	4	60
ASE_00138	RNaseP_bact_a links to Rfam database...	0.53	0.52	0.55	42	40393	35	4	31	0	39
ASE_00142	RNaseP_bact_a links to Rfam database...	0.75	0.71	0.80	87	67052	26	4	18	4	35
ASE_00146	RNaseP_bact_a links to Rfam database...	0.51	0.46	0.56	57	70774	48	0	45	3	67
ASE_00153	RNaseP_nuc links to Rfam database...	0.61	0.62	0.61	45	57556	72	2	27	43	28
ASE_00161	RNaseP_bact_b links to Rfam database...	0.27	0.29	0.26	25	53530	73	18	55	0	62
ASE_00163	RNaseP_bact_a links to Rfam database...	0.64	0.63	0.66	59	53211	42	4	27	11	34
ASE_00170	RNaseP_bact_a links to Rfam database...	0.70	0.68	0.72	63	48740	26	2	23	1	30
ASE_00174	RNaseP_bact_a links to Rfam database...	0.52	0.51	0.53	56	60970	51	6	43	2	53
ASE_00179	RNaseP_bact_a links to Rfam database...	0.64	0.65	0.62	55	44164	34	7	27	0	29
ASE_00180	RNaseP_bact_a links to Rfam database...	0.72	0.69	0.75	69	51268	29	2	21	6	31
ASE_00182	RNaseP_bact_a links to Rfam database...	0.48	0.46	0.50	63	84128	67	6	58	3	73
ASE_00184	RNaseP_bact_a links to Rfam database...	0.62	0.63	0.62	64	54511	40	10	30	0	38
ASE_00185	RNaseP_bact_a links to Rfam database...	0.80	0.76	0.84	97	73421	25	3	15	7	31
ASE_00186	RNaseP_bact_a links to Rfam database...	0.74	0.70	0.79	92	78886	30	3	22	5	40
ASE_00190	RNaseP_bact_b links to Rfam database...	0.50	0.48	0.52	43	45368	44	2	38	4	47
ASE_00212	RNaseP_bact_a links to Rfam database...	0.53	0.51	0.55	76	93822	67	5	58	4	72
ASE_00214	RNaseP_bact_a links to Rfam database...	0.80	0.79	0.81	81	56180	27	3	16	8	22
ASE_00215	RNaseP_bact_a links to Rfam database...	0.54	0.51	0.57	50	48429	39	4	33	2	49
ASE_00217	RNaseP_bact_a links to Rfam database...	0.30	0.29	0.32	26	40388	60	6	50	4	64
ASE_00221	RNaseP_bact_a links to Rfam database...	0.58	0.53	0.64	62	64523	38	3	32	3	55
ASE_00228	RNaseP_bact_a links to Rfam database...	0.60	0.60	0.59	52	46883	36	14	22	0	34
ASE_00229	RNaseP_bact_a links to Rfam database...	0.60	0.60	0.61	52	42401	33	10	23	0	35
ASE_00238	RNaseP_bact_a links to Rfam database...	0.62	0.61	0.63	70	64150	46	2	39	5	44
ASE_00241	RNaseP_bact_a links to Rfam database...	0.60	0.60	0.61	52	43871	34	7	26	1	35
ASE_00248	RNaseP_bact_a links to Rfam database...	0.47	0.43	0.51	49	62384	48	3	45	0	65
ASE_00255	RNaseP_bact_a links to Rfam database...	0.47	0.45	0.50	59	74572	60	7	53	0	71
ASE_00257	RNaseP_bact_a links to Rfam database...	0.64	0.64	0.64	62	50943	35	1	34	0	35
ASE_00267	RNaseP_bact_a links to Rfam database...	0.32	0.31	0.34	27	45070	61	5	48	8	61
ASE_00270	RNaseP_bact_a links to Rfam database...	0.64	0.63	0.66	81	72267	43	8	34	1	47
ASE_00279	RNaseP_bact_a links to Rfam database...	0.70	0.66	0.74	67	53210	28	0	24	4	34
ASE_00280	RNaseP_bact_a links to Rfam database...	0.37	0.37	0.38	36	51908	62	6	53	3	62
ASE_00281	RNaseP_bact_a links to Rfam database...	0.60	0.56	0.64	49	44475	34	3	24	7	39
ASE_00283	RNaseP_bact_a links to Rfam database...	0.73	0.69	0.76	74	61679	28	4	19	5	33
ASE_00285	RNaseP_bact_a links to Rfam database...	0.71	0.67	0.75	82	68897	35	2	25	8	40
ASE_00292	RNaseP_bact_a links to Rfam database...	0.71	0.67	0.76	92	81689	34	4	25	5	46
ASE_00294	RNaseP_bact_a links to Rfam database...	0.79	0.75	0.83	128	114327	29	3	23	3	43
ASE_00297	RNaseP_bact_a links to Rfam database...	0.49	0.50	0.49	49	52875	53	5	46	2	49
ASE_00298	RNaseP_bact_a links to Rfam database...	0.47	0.45	0.50	51	67425	57	7	45	5	62
ASE_00305	RNaseP_bact_b links to Rfam database...	0.44	0.46	0.42	39	54523	61	15	38	8	46
ASE_00318	RNaseP_bact_b links to Rfam database...	0.63	0.60	0.65	71	80091	42	13	25	4	47
ASE_00321	RNaseP_bact_b links to Rfam database...	0.40	0.40	0.40	35	54527	57	9	44	4	53
ASE_00328	RNaseP_bact_b links to Rfam database...	0.41	0.41	0.40	46	72657	74	3	65	6	66
ASE_00332	RNaseP_bact_a links to Rfam database...	0.53	0.51	0.55	71	81682	58	2	55	1	67
ASE_00335	RNaseP_bact_b links to Rfam database...	0.48	0.47	0.50	54	75357	62	5	50	7	62
ASE_00340	RNaseP_bact_a links to Rfam database...	0.75	0.74	0.76	63	45973	29	6	14	9	22
ASE_00353	RNaseP_bact_a links to Rfam database...	0.45	0.46	0.45	49	57860	61	11	50	0	58
ASE_00361	RNaseP_bact_a links to Rfam database...	0.49	0.46	0.51	59	75351	59	7	49	3	68
ASE_00362	RNaseP_bact_a links to Rfam database...	0.62	0.62	0.63	56	48116	36	6	27	3	35
ASE_00363	RNaseP_bact_a links to Rfam database...	0.54	0.55	0.53	52	51262	46	5	41	0	42
ASE_00364	RNaseP_bact_a links to Rfam database...	0.31	0.30	0.31	32	54183	74	7	63	4	73
ASE_00366	RNaseP_bact_a links to Rfam database...	0.52	0.54	0.50	53	58546	57	10	44	3	45
ASE_00367	RNaseP_bact_a links to Rfam database...	0.32	0.34	0.31	29	42978	64	8	56	0	57
ASE_00372	RNaseP_bact_a links to Rfam database...	0.70	0.69	0.72	69	51907	31	5	22	4	31
ASE_00376	RNaseP_bact_a links to Rfam database...	0.52	0.50	0.54	53	56855	48	4	41	3	52
ASE_00382	RNaseP_bact_a links to Rfam database...	0.66	0.65	0.67	55	41823	30	6	21	3	29
ASE_00384	RNaseP_bact_a links to Rfam database...	0.76	0.75	0.78	69	48427	25	3	17	5	23
ASE_00386	RNaseP_bact_a links to Rfam database...	0.53	0.53	0.53	51	50306	51	4	42	5	45
ASE_00387	RNaseP_bact_a links to Rfam database...	0.41	0.41	0.41	43	55840	62	6	56	0	61
ASE_00388	RNaseP_bact_a links to Rfam database...	0.70	0.70	0.70	62	45665	29	2	24	3	27
ASE_00390	RNaseP_bact_a links to Rfam database...	0.47	0.46	0.49	39	42115	51	3	38	10	46
ASE_00393	RNaseP_bact_a links to Rfam database...	0.37	0.35	0.39	33	47811	57	2	49	6	60
ASE_00394	RNaseP_bact_a links to Rfam database...	0.72	0.72	0.73	67	46879	29	3	22	4	26
ASE_00395	RNaseP_bact_a links to Rfam database...	0.69	0.68	0.70	57	41535	33	2	22	9	27
ASE_00396	RNaseP_bact_a links to Rfam database...	0.41	0.41	0.40	34	41532	56	11	39	6	49
ASE_00397	RNaseP_bact_a links to Rfam database...	0.45	0.46	0.45	48	54508	59	8	51	0	57
ASE_00398	RNaseP_bact_a links to Rfam database...	0.64	0.62	0.66	64	55848	36	1	32	3	40
ASE_00400	RNaseP_bact_a links to Rfam database...	0.54	0.53	0.55	56	57868	47	2	44	1	50
ASE_00402	RNaseP_bact_a links to Rfam database...	0.45	0.45	0.46	38	42404	50	5	39	6	47
ASE_00404	RNaseP_bact_a links to Rfam database...	0.55	0.54	0.57	46	42990	42	0	35	7	39
ASE_00406	RNaseP_bact_a links to Rfam database...	0.71	0.69	0.74	65	48740	27	8	15	4	29
ASE_00411	RNaseP_bact_a links to Rfam database...	0.35	0.36	0.34	32	49361	62	11	51	0	57
ASE_00412	RNaseP_bact_a links to Rfam database...	0.46	0.45	0.48	47	58214	51	8	42	1	58
ASE_00416	RNaseP_bact_a links to Rfam database...	0.69	0.67	0.72	85	77303	41	3	30	8	42
ASE_00419	RNaseP_bact_a links to Rfam database...	0.74	0.72	0.77	74	54850	26	5	17	4	29
ASE_00422	RNaseP_bact_a links to Rfam database...	0.70	0.68	0.72	64	46882	33	5	20	8	30
ASE_00423	RNaseP_bact_a links to Rfam database...	0.55	0.54	0.55	59	56846	51	7	41	3	50
ASE_00427	RNaseP_nuc links to Rfam database...	0.15	0.20	0.12	9	40677	83	22	47	14	37
ASE_00428	RNaseP_bact_a links to Rfam database...	0.53	0.51	0.55	64	76520	56	5	47	4	61
ASE_00430	RNaseP_bact_a links to Rfam database...	0.63	0.62	0.65	60	46879	40	5	27	8	37
ASE_00437	RNaseP_bact_a links to Rfam database...	0.42	0.40	0.44	54	79277	70	4	66	0	81
ASE_00448	RNaseP_bact_a links to Rfam database...	0.22	0.22	0.23	25	64150	92	6	80	6	87
ASE_00451	RNaseP_bact_a links to Rfam database...	0.49	0.46	0.52	58	70765	56	3	50	3	67
CRW_00177	SSU_rRNA_bacteria links to Rfam database...	0.42	0.42	0.42	197	1178408	288	34	241	13	276
CRW_00250	SSU_rRNA_bacteria links to Rfam database...	0.40	0.40	0.40	190	1198454	296	51	231	14	288
CRW_00278	SSU_rRNA_bacteria links to Rfam database...	0.42	0.41	0.43	186	1129828	264	31	211	22	264
CRW_00280	SSU_rRNA_bacteria links to Rfam database...	0.50	0.49	0.50	222	1117818	233	28	192	13	231
CRW_00330	SSU_rRNA_eukarya links to Rfam database...	0.31	0.32	0.30	165	1988473	454	70	307	77	352
CRW_00411	SSU_rRNA_eukarya links to Rfam database...	0.33	0.34	0.32	169	1614974	406	78	282	46	327
CRW_00414	SSU_rRNA_eukarya links to Rfam database...	0.28	0.29	0.27	143	1665688	437	80	314	43	352
CRW_00548	5S_rRNA links to Rfam database...	0.83	0.76	0.91	29	7349	5	0	3	2	9
CRW_00552	5S_rRNA links to Rfam database...	0.32	0.31	0.34	12	7105	25	2	21	2	27
CRW_00555	5S_rRNA links to Rfam database...	0.74	0.68	0.82	27	7593	6	0	6	0	13
CRW_00567	5S_rRNA links to Rfam database...	0.21	0.20	0.23	8	7468	29	3	24	2	32
CRW_00570	5S_rRNA links to Rfam database...	0.75	0.76	0.74	28	6865	14	0	10	4	9
CRW_00573	5S_rRNA links to Rfam database...	0.25	0.25	0.26	10	7102	28	0	28	0	30
CRW_00789	SSU_rRNA_bacteria links to Rfam database...	0.36	0.36	0.36	161	1137337	307	44	244	19	286
CRW_01484	5S_rRNA links to Rfam database...	0.18	0.18	0.18	7	7465	32	4	27	1	32
CRW_01485	5S_rRNA links to Rfam database...	0.18	0.18	0.19	7	7466	30	2	28	0	32
CRW_01487	5S_rRNA links to Rfam database...	0.16	0.15	0.18	6	7469	28	3	25	0	35
CRW_01489	5S_rRNA links to Rfam database...	0.82	0.74	0.91	29	7471	5	0	3	2	10
CRW_01491	5S_rRNA links to Rfam database...	0.73	0.65	0.82	28	8351	9	0	6	3	15
CRW_01492	5S_rRNA links to Rfam database...	0.76	0.74	0.78	31	7586	14	0	9	5	11
CRW_01494	5S_rRNA links to Rfam database...	0.74	0.70	0.78	28	7104	9	0	8	1	12
CRW_01497	5S_rRNA links to Rfam database...	0.55	0.45	0.67	18	7113	13	0	9	4	22
CRW_01498	5S_rRNA links to Rfam database...	0.88	0.81	0.95	35	8091	5	0	2	3	8
CRW_01499	5S_rRNA links to Rfam database...	0.52	0.51	0.54	21	7962	19	3	15	1	20
CRW_01500	5S_rRNA links to Rfam database...	0.86	0.79	0.94	30	7718	5	0	2	3	8
CRW_01501	5S_rRNA links to Rfam database...	0.87	0.84	0.90	38	8473	7	0	4	3	7
CRW_01508	5S_rRNA links to Rfam database...	0.90	0.86	0.95	36	7963	8	0	2	6	6
CRW_01532	5S_rRNA links to Rfam database...	0.76	0.73	0.79	27	7106	12	0	7	5	10
CRW_01533	5S_rRNA links to Rfam database...	0.82	0.78	0.85	29	7106	11	0	5	6	8
CRW_01534	5S_rRNA links to Rfam database...	0.80	0.78	0.83	29	7105	11	0	6	5	8
CRW_01535	5S_rRNA links to Rfam database...	0.84	0.78	0.91	29	7108	8	0	3	5	8
CRW_01536	5S_rRNA links to Rfam database...	0.88	0.86	0.89	32	6985	5	0	4	1	5
CRW_01537	5S_rRNA links to Rfam database...	0.77	0.70	0.84	26	7109	11	0	5	6	11
CRW_01539	5S_rRNA links to Rfam database...	0.83	0.76	0.90	28	7109	9	0	3	6	9
CRW_01540	5S_rRNA links to Rfam database...	0.63	0.59	0.67	22	7107	16	0	11	5	15
CRW_01541	5S_rRNA links to Rfam database...	0.38	0.38	0.38	14	7103	24	6	17	1	23
CRW_01542	5S_rRNA links to Rfam database...	0.87	0.84	0.91	31	7106	8	0	3	5	6
CRW_01544	5S_rRNA links to Rfam database...	0.86	0.84	0.89	31	7105	7	0	4	3	6
CRW_01548	5S_rRNA links to Rfam database...	0.77	0.73	0.82	27	6988	11	0	6	5	10
CRW_01555	5S_rRNA links to Rfam database...	0.59	0.57	0.62	21	9011	15	2	11	2	16
CRW_01556	5S_rRNA links to Rfam database...	0.71	0.70	0.72	26	7104	14	0	10	4	11
CRW_01557	5S_rRNA links to Rfam database...	0.92	0.89	0.94	33	7105	6	0	2	4	4
CRW_01559	5S_rRNA links to Rfam database...	0.76	0.73	0.79	27	7226	14	0	7	7	10
CRW_01562	5S_rRNA links to Rfam database...	0.83	0.78	0.88	29	7107	9	0	4	5	8
CRW_01563	5S_rRNA links to Rfam database...	0.61	0.54	0.69	20	6874	10	2	7	1	17
CRW_01566	5S_rRNA links to Rfam database...	0.74	0.73	0.75	27	7104	12	0	9	3	10
CRW_01568	5S_rRNA links to Rfam database...	0.80	0.78	0.83	29	7105	11	0	6	5	8
CRW_01569	5S_rRNA links to Rfam database...	0.82	0.78	0.85	29	7106	10	0	5	5	8
CRW_01570	5S_rRNA links to Rfam database...	0.81	0.76	0.88	28	7108	10	0	4	6	9
CRW_01572	5S_rRNA links to Rfam database...	0.32	0.30	0.34	11	6989	21	4	17	0	26
CRW_01573	5S_rRNA links to Rfam database...	0.82	0.78	0.85	29	7226	10	0	5	5	8
CRW_01578	5S_rRNA links to Rfam database...	0.84	0.78	0.91	29	7108	8	0	3	5	8
CRW_01580	5S_rRNA links to Rfam database...	0.64	0.57	0.72	21	7111	14	0	8	6	16
CRW_01581	5S_rRNA links to Rfam database...	0.30	0.27	0.34	10	7111	20	0	19	1	27
CRW_01583	5S_rRNA links to Rfam database...	0.80	0.76	0.85	28	7107	9	0	5	4	9
CRW_01584	5S_rRNA links to Rfam database...	0.90	0.89	0.92	33	7104	7	0	3	4	4
CRW_01590	5S_rRNA links to Rfam database...	0.29	0.30	0.29	11	7102	27	6	21	0	26
CRW_01593	5S_rRNA links to Rfam database...	0.82	0.78	0.85	29	7106	10	0	5	5	8
CRW_01595	5S_rRNA links to Rfam database...	0.74	0.70	0.79	26	8482	12	0	7	5	11
CRW_01599	5S_rRNA links to Rfam database...	0.23	0.24	0.23	9	7101	30	5	25	0	28
CRW_01603	5S_rRNA links to Rfam database...	0.83	0.78	0.88	29	7107	7	0	4	3	8
CRW_01605	5S_rRNA links to Rfam database...	0.75	0.70	0.81	26	7108	11	0	6	5	11
CRW_01606	5S_rRNA links to Rfam database...	0.83	0.78	0.88	29	7107	7	0	4	3	8
CRW_01608	5S_rRNA links to Rfam database...	0.86	0.81	0.91	30	8352	4	0	3	1	7
CRW_01616	5S_rRNA links to Rfam database...	0.82	0.78	0.85	29	7106	11	0	5	6	8
CRW_01617	5S_rRNA links to Rfam database...	0.92	0.89	0.94	33	7105	6	0	2	4	4
CRW_01620	5S_rRNA links to Rfam database...	0.89	0.89	0.89	33	6984	7	0	4	3	4
CRW_01621	5S_rRNA links to Rfam database...	0.69	0.68	0.71	25	7105	14	0	10	4	12
CRW_01623	5S_rRNA links to Rfam database...	0.87	0.81	0.94	30	7108	3	0	2	1	7
CRW_01625	5S_rRNA links to Rfam database...	0.88	0.86	0.89	32	7104	7	0	4	3	5
PDB_00012	mir-TAR links to Rfam database...	1.00	1.00	1.00	7	399	3	0	0	3	0
PDB_00070	tRNA links to Rfam database...	0.68	0.67	0.70	16	2827	7	1	6	0	8
PDB_00213	Gammaretro_CES links to Rfam database...	0.92	0.85	1.00	35	5015	0	0	0	0	6
PDB_00229	tRNA links to Rfam database...	0.44	0.43	0.45	10	2753	12	3	9	0	13
PDB_00327	tRNA links to Rfam database...	0.56	0.52	0.60	12	3061	8	0	8	0	11
PDB_00362	tRNA links to Rfam database...	0.98	0.95	1.00	21	2829	1	0	0	1	1
PDB_00402	tRNA links to Rfam database...	0.27	0.30	0.26	7	2748	20	2	18	0	16
PDB_00431	tRNA links to Rfam database...	-0.01	0.00	0.00	0	2195	16	0	16	0	20
PDB_00474	tRNA links to Rfam database...	0.93	0.91	0.95	21	2679	3	0	1	2	2
PDB_00553	mir-TAR links to Rfam database...	1.00	1.00	1.00	11	454	0	0	0	0	0
PDB_00571	tRNA links to Rfam database...	0.17	0.16	0.19	4	3300	17	6	11	0	21
PDB_00667	tRNA links to Rfam database...	0.71	0.68	0.75	15	2830	6	4	1	1	7
PDB_00741	Entero_5_CRE links to Rfam database...	0.87	0.76	1.00	13	690	0	0	0	0	4
PDB_00810	s2m links to Rfam database...	0.71	0.65	0.79	11	1067	4	0	3	1	6
PDB_00828	Purine links to Rfam database...	0.88	0.78	1.00	21	2464	0	0	0	0	6
PDB_00829	Purine links to Rfam database...	0.86	0.75	1.00	18	2260	0	0	0	0	6
PDB_00876	HIV_FE links to Rfam database...	0.97	0.95	1.00	19	971	0	0	0	0	1
PDB_01002	tRNA links to Rfam database...	0.93	0.90	0.95	19	2755	3	0	1	2	2
PDB_01020	Purine links to Rfam database...	0.86	0.74	1.00	17	2261	1	0	0	1	6
PDB_01050	UnaL2 links to Rfam database...	0.96	0.92	1.00	12	618	2	0	0	2	1
PDB_01053	tRNA links to Rfam database...	1.00	1.00	1.00	16	1362	0	0	0	0	0
PDB_01073	SAM links to Rfam database...	0.75	0.65	0.88	22	4346	4	0	3	1	12
PDB_01105	SSU_rRNA_bacteria links to Rfam database...	0.48	0.47	0.49	254	1433456	289	27	234	28	286
PDB_01114	TPP links to Rfam database...	0.42	0.37	0.48	10	2829	11	0	11	0	17
PDB_01152	HIV_FS2 links to Rfam database...	0.96	0.93	1.00	13	548	0	0	0	0	1
PDB_01236	ykoK links to Rfam database...	0.70	0.67	0.73	36	11579	16	0	13	3	18
RFA_00389	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00390	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00391	Hammerhead_3 links to Rfam database...	0.93	0.87	1.00	13	1418	2	0	0	2	2
RFA_00396	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	2	0	0	2	1
RFA_00402	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	0	0	0	0	0
RFA_00409	Hammerhead_3 links to Rfam database...	0.55	0.53	0.57	8	1417	7	1	5	1	7
RFA_00416	Hammerhead_3 links to Rfam database...	0.93	0.93	0.93	14	1470	4	0	1	3	1
RFA_00433	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00434	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00436	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00440	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1470	2	0	0	2	0
RFA_00442	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00444	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1525	1	0	0	1	0
RFA_00583	Y_RNA links to Rfam database...	0.55	0.53	0.57	8	4936	20	0	6	14	7
RFA_00584	Y_RNA links to Rfam database...	0.87	0.87	0.87	13	2911	16	0	2	14	2
RFA_00585	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4836	12	0	0	12	0
RFA_00586	Y_RNA links to Rfam database...	0.89	0.80	1.00	12	3904	11	0	0	11	3
RFA_00587	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4836	12	0	0	12	0
RFA_00588	Y_RNA links to Rfam database...	0.93	0.87	1.00	13	4547	12	0	0	12	2
RFA_00589	Y_RNA links to Rfam database...	0.93	0.87	1.00	13	4358	16	0	0	16	2
RFA_00594	Y_RNA links to Rfam database...	0.97	0.93	1.00	14	2761	11	0	0	11	1
RFA_00596	Y_RNA links to Rfam database...	0.00	0.00	0.00	0	5981	23	4	10	9	15
RFA_00599	Telomerase-vert links to Rfam database...	0.66	0.70	0.63	78	101351	65	17	29	19	33
RFA_00601	Telomerase-vert links to Rfam database...	0.47	0.49	0.44	56	99109	88	22	48	18	58
RFA_00602	Telomerase-vert links to Rfam database...	0.52	0.55	0.50	64	101347	87	16	48	23	52
RFA_00658	Hammerhead_1 links to Rfam database...	0.59	0.50	0.70	7	1118	5	0	3	2	7
RFA_00664	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	980	11	0	10	1	14
RFA_00667	Hammerhead_1 links to Rfam database...	0.29	0.29	0.31	4	977	10	1	8	1	10
RFA_00668	Hammerhead_1 links to Rfam database...	0.41	0.43	0.40	6	975	9	0	9	0	8
RFA_00672	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	895	9	0	8	1	13
RFA_00673	Hammerhead_1 links to Rfam database...	0.42	0.36	0.50	5	1118	6	0	5	1	9
RFA_00674	Hammerhead_1 links to Rfam database...	0.71	0.71	0.71	10	1114	5	0	4	1	4
RFA_00675	Hammerhead_1 links to Rfam database...	0.29	0.29	0.31	4	977	9	1	8	0	10
RFA_00677	Hammerhead_1 links to Rfam database...	0.42	0.43	0.43	6	976	9	0	8	1	8
RFA_00678	Hammerhead_1 links to Rfam database...	0.43	0.29	0.67	4	940	2	0	2	0	10
RFA_00680	Hammerhead_1 links to Rfam database...	0.74	0.71	0.77	10	1115	6	0	3	3	4
RFA_00704	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	981	9	0	9	0	14
RFA_00707	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	1026	9	3	6	0	14
RFA_00715	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	936	10	0	10	0	14
RFA_00717	Hammerhead_1 links to Rfam database...	0.66	0.64	0.69	9	890	4	0	4	0	5
RFA_00730	s2m links to Rfam database...	0.69	0.67	0.73	8	892	4	1	2	1	4
RFA_00731	s2m links to Rfam database...	0.66	0.67	0.67	8	891	5	1	3	1	4
RFA_00733	s2m links to Rfam database...	0.66	0.67	0.67	8	891	5	1	3	1	4
RFA_00734	s2m links to Rfam database...	0.61	0.67	0.57	8	889	7	1	5	1	4
RFA_00736	s2m links to Rfam database...	0.66	0.67	0.67	8	891	5	1	3	1	4
RFA_00737	s2m links to Rfam database...	0.75	0.75	0.75	9	891	5	0	3	2	3
RFA_00745	s2m links to Rfam database...	0.66	0.67	0.67	8	934	5	1	3	1	4
RFA_00749	s2m links to Rfam database...	0.66	0.67	0.67	8	891	5	1	3	1	4
RFA_00758	s2m links to Rfam database...	0.96	0.92	1.00	11	892	0	0	0	0	1
RFA_00762	s2m links to Rfam database...	0.64	0.67	0.62	8	890	5	1	4	0	4
RFA_00763	s2m links to Rfam database...	0.75	0.75	0.75	9	891	4	0	3	1	3
RFA_00764	s2m links to Rfam database...	0.66	0.67	0.67	8	891	5	1	3	1	4
RFA_00765	s2m links to Rfam database...	0.75	0.75	0.75	9	891	5	0	3	2	3
RFA_00786	Gammaretro_CES links to Rfam database...	0.71	0.72	0.70	23	5017	10	2	8	0	9
RFA_00791	Gammaretro_CES links to Rfam database...	0.50	0.50	0.50	16	5119	16	5	11	0	16
RFA_00792	Gammaretro_CES links to Rfam database...	0.94	0.94	0.94	30	5018	4	0	2	2	2
RFA_00801	Gammaretro_CES links to Rfam database...	0.85	0.81	0.90	26	5021	4	0	3	1	6
SPR_00007	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00009	tRNA links to Rfam database...	0.97	0.95	1.00	19	2831	0	0	0	0	1
SPR_00010	tRNA links to Rfam database...	0.51	0.57	0.46	12	2824	14	2	12	0	9
SPR_00012	tRNA links to Rfam database...	0.24	0.25	0.24	5	2829	16	1	15	0	15
SPR_00013	tRNA links to Rfam database...	0.97	0.95	1.00	19	2831	0	0	0	0	1
SPR_00016	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00017	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00025	tRNA links to Rfam database...	0.30	0.35	0.27	7	2900	19	8	11	0	13
SPR_00026	tRNA links to Rfam database...	0.60	0.57	0.63	12	2907	8	0	7	1	9
SPR_00027	tRNA links to Rfam database...	0.38	0.38	0.38	8	2905	14	0	13	1	13
SPR_00036	tRNA links to Rfam database...	0.84	0.80	0.89	16	2757	3	0	2	1	4
SPR_00045	tRNA links to Rfam database...	0.95	0.95	0.95	21	2828	2	0	1	1	1
SPR_00064	tRNA links to Rfam database...	0.54	0.57	0.52	12	2827	11	2	9	0	9
SPR_00065	tRNA links to Rfam database...	0.50	0.52	0.48	11	2827	12	4	8	0	10
SPR_00066	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	1	0	0	1	0
SPR_00068	tRNA links to Rfam database...	0.55	0.52	0.58	11	2831	8	3	5	0	10
SPR_00070	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	1	0	0	1	0
SPR_00074	tRNA links to Rfam database...	0.55	0.55	0.55	11	2830	10	2	7	1	9
SPR_00079	tRNA links to Rfam database...	1.00	1.00	1.00	19	2466	2	0	0	2	0
SPR_00086	tRNA links to Rfam database...	0.30	0.33	0.28	7	2825	18	5	13	0	14
SPR_00087	tRNA links to Rfam database...	0.42	0.45	0.41	9	2828	14	4	9	1	11
SPR_00088	tRNA links to Rfam database...	0.42	0.45	0.41	9	2828	14	4	9	1	11
SPR_00089	tRNA links to Rfam database...	0.42	0.45	0.41	9	2828	14	4	9	1	11
SPR_00090	tRNA links to Rfam database...	0.18	0.20	0.17	4	2827	19	4	15	0	16
SPR_00091	tRNA links to Rfam database...	0.42	0.45	0.41	9	2828	14	4	9	1	11
SPR_00095	tRNA links to Rfam database...	0.52	0.52	0.52	11	2829	10	2	8	0	10
SPR_00111	tRNA links to Rfam database...	0.55	0.57	0.55	12	2679	10	1	9	0	9
SPR_00112	tRNA links to Rfam database...	0.78	0.76	0.80	16	2681	5	3	1	1	5
SPR_00115	tRNA links to Rfam database...	0.85	0.81	0.89	17	2682	2	0	2	0	4
SPR_00117	tRNA links to Rfam database...	0.67	0.71	0.63	15	2826	9	1	8	0	6
SPR_00139	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	1	0	0	1	0
SPR_00153	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00155	tRNA links to Rfam database...	0.49	0.52	0.46	11	2902	13	3	10	0	10
SPR_00156	tRNA links to Rfam database...	0.48	0.52	0.44	11	2901	14	5	9	0	10
SPR_00176	tRNA links to Rfam database...	0.50	0.55	0.46	11	2826	14	2	11	1	9
SPR_00177	tRNA links to Rfam database...	0.51	0.57	0.46	12	2824	14	2	12	0	9
SPR_00178	tRNA links to Rfam database...	0.70	0.71	0.68	15	2828	7	3	4	0	6
SPR_00191	tRNA links to Rfam database...	0.18	0.19	0.19	4	2829	17	4	13	0	17
SPR_00200	tRNA links to Rfam database...	0.53	0.52	0.55	11	2830	10	3	6	1	10
SPR_00224	tRNA links to Rfam database...	0.50	0.50	0.50	10	3721	15	5	5	5	10
SPR_00271	tRNA links to Rfam database...	0.52	0.57	0.48	12	2825	13	3	10	0	9
SPR_00273	tRNA links to Rfam database...	0.30	0.33	0.28	7	2825	19	2	16	1	14
SPR_00276	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00277	tRNA links to Rfam database...	0.98	0.95	1.00	20	2906	0	0	0	0	1
SPR_00294	tRNA links to Rfam database...	0.55	0.57	0.55	12	2828	10	3	7	0	9
SPR_00295	tRNA links to Rfam database...	0.95	0.95	0.95	20	2754	2	0	1	1	1
SPR_00314	tRNA links to Rfam database...	0.68	0.71	0.65	15	2903	11	0	8	3	6
SPR_00315	tRNA links to Rfam database...	0.51	0.57	0.46	12	2900	16	2	12	2	9
SPR_00317	tRNA links to Rfam database...	0.54	0.60	0.50	12	2902	12	6	6	0	8
SPR_00318	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	4	0	0	4	0
SPR_00321	tRNA links to Rfam database...	0.53	0.57	0.50	12	2979	12	1	11	0	9
SPR_00333	tRNA links to Rfam database...	0.45	0.48	0.43	10	2752	13	5	8	0	11
SPR_00352	tRNA links to Rfam database...	0.54	0.57	0.52	12	2903	11	3	8	0	9
SPR_00353	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	1	0	0	1	0
SPR_00357	tRNA links to Rfam database...	0.98	0.95	1.00	20	2906	0	0	0	0	1
SPR_00358	tRNA links to Rfam database...	0.53	0.60	0.48	12	2901	14	3	10	1	8
SPR_00370	tRNA links to Rfam database...	0.23	0.24	0.24	5	2754	16	3	13	0	16
SPR_00386	tRNA links to Rfam database...	0.50	0.50	0.50	10	4166	16	5	5	6	10
SPR_00414	tRNA links to Rfam database...	0.30	0.33	0.28	7	3545	22	6	12	4	14
SPR_00415	tRNA links to Rfam database...	0.76	0.81	0.71	17	3546	7	5	2	0	4
SPR_00417	tRNA links to Rfam database...	0.29	0.32	0.28	7	3545	22	7	11	4	15
SPR_00418	tRNA links to Rfam database...	0.29	0.32	0.28	7	3545	22	7	11	4	15
SPR_00434	tRNA links to Rfam database...	0.27	0.29	0.27	6	2828	16	7	9	0	15
SPR_00435	tRNA links to Rfam database...	0.65	0.67	0.64	14	2828	8	0	8	0	7
SPR_00436	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	1	0	0	1	0
SPR_00437	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	1	0	0	1	0
SPR_00438	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	0	0	0	0	0
SPR_00452	tRNA links to Rfam database...	0.53	0.57	0.50	12	2826	12	2	10	0	9
SPR_00455	tRNA links to Rfam database...	0.28	0.29	0.29	6	2829	15	5	10	0	15
SPR_00456	tRNA links to Rfam database...	0.54	0.57	0.52	12	2827	12	2	9	1	9
SPR_00476	tRNA links to Rfam database...	0.51	0.57	0.46	12	2749	15	3	11	1	9
SPR_00479	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00482	tRNA links to Rfam database...	0.85	0.76	0.94	16	2684	1	0	1	0	5
SPR_00483	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00487	tRNA links to Rfam database...	-0.01	0.00	0.00	0	2681	20	0	20	0	22
SPR_00493	tRNA links to Rfam database...	0.30	0.32	0.29	7	2751	17	5	12	0	15
SPR_00496	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	1	0	0	1	0
SPR_00497	tRNA links to Rfam database...	0.51	0.57	0.46	12	2749	15	3	11	1	9
SPR_00502	tRNA links to Rfam database...	0.56	0.57	0.55	12	2904	10	2	8	0	9
SPR_00504	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	0	0	0	0	0
SPR_00505	tRNA links to Rfam database...	0.52	0.55	0.50	11	2904	11	2	9	0	9
SPR_00506	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00509	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	2	0	0	2	0
SPR_00512	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	2	0	0	2	0
SPR_00513	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00518	tRNA links to Rfam database...	0.56	0.55	0.58	11	2907	8	1	7	0	9
SPR_00548	tRNA links to Rfam database...	0.53	0.57	0.50	12	3379	12	0	12	0	9
SPR_00557	tRNA links to Rfam database...	0.41	0.43	0.41	9	2828	14	1	12	1	12
SPR_00561	tRNA links to Rfam database...	0.40	0.43	0.39	9	2827	15	1	13	1	12
SPR_00590	tRNA links to Rfam database...	0.33	0.35	0.32	7	2981	15	3	12	0	13
SPR_00593	tRNA links to Rfam database...	0.51	0.53	0.50	10	2755	10	4	6	0	9
SPR_00595	tRNA links to Rfam database...	0.55	0.57	0.55	12	2753	10	2	8	0	9
SPR_00598	tRNA links to Rfam database...	0.54	0.57	0.52	12	2980	12	2	9	1	9
SPR_00610	tRNA links to Rfam database...	0.87	0.81	0.94	17	2538	2	0	1	1	4
SPR_00620	tRNA links to Rfam database...	0.52	0.57	0.48	12	2978	14	5	8	1	9
SPR_00721	tRNA links to Rfam database...	0.48	0.52	0.44	11	2901	14	3	11	0	10
SPR_00722	tRNA links to Rfam database...	0.76	0.80	0.73	16	2904	6	4	2	0	4
SPR_00758	tRNA links to Rfam database...	0.51	0.57	0.46	12	2977	14	2	12	0	9
SPR_00760	tRNA links to Rfam database...	0.70	0.76	0.64	16	3545	11	4	5	2	5
SPR_00777	tRNA links to Rfam database...	0.50	0.55	0.46	11	2604	13	5	8	0	9
SPR_00867	tRNA links to Rfam database...	0.52	0.57	0.48	12	2901	13	2	11	0	9
SPR_00868	tRNA links to Rfam database...	0.83	0.81	0.85	17	2906	4	0	3	1	4
SPR_00943	tRNA links to Rfam database...	0.31	0.35	0.29	7	2532	17	7	10	0	13
SPR_00957	tRNA links to Rfam database...	0.78	0.76	0.80	16	2983	5	0	4	1	5
SPR_01040	tRNA links to Rfam database...	0.83	0.81	0.85	17	2755	4	0	3	1	4
SPR_01088	tRNA links to Rfam database...	0.50	0.52	0.48	11	2903	14	2	10	2	10
SPR_01095	tRNA links to Rfam database...	0.76	0.76	0.76	16	2829	6	0	5	1	5
SPR_01106	tRNA links to Rfam database...	0.50	0.52	0.48	11	2533	12	3	9	0	10
SPR_01117	tRNA links to Rfam database...	0.30	0.33	0.28	7	2978	18	2	16	0	14
SPR_01157	tRNA links to Rfam database...	0.73	0.76	0.70	16	2752	8	0	7	1	5
SRP_00006	Metazoa_SRP links to Rfam database...	0.86	0.84	0.88	85	45656	16	3	9	4	16
SRP_00008	Bacteria_small_SRP links to Rfam database...	1.00	1.00	1.00	25	2901	0	0	0	0	0
SRP_00011	Plant_SRP links to Rfam database...	0.52	0.50	0.55	52	46265	45	2	41	2	52
SRP_00015	Plant_SRP links to Rfam database...	0.57	0.56	0.59	55	46266	44	8	31	5	44
SRP_00020	Bacteria_small_SRP links to Rfam database...	0.86	0.88	0.85	29	5531	5	1	4	0	4
SRP_00024	Bacteria_large_SRP links to Rfam database...	0.81	0.82	0.81	71	37587	18	5	12	1	16
SRP_00026	Bacteria_large_SRP links to Rfam database...	0.68	0.68	0.67	60	36767	37	2	27	8	28
SRP_00030	Bacteria_large_SRP links to Rfam database...	0.77	0.78	0.76	69	36765	24	4	18	2	19
SRP_00031	Bacteria_large_SRP links to Rfam database...	0.68	0.69	0.68	61	36225	34	2	27	5	28
SRP_00038	Bacteria_small_SRP links to Rfam database...	0.94	0.94	0.94	31	5017	2	0	2	0	2
SRP_00042	Bacteria_small_SRP links to Rfam database...	0.46	0.48	0.44	12	3978	17	1	14	2	13
SRP_00044	Bacteria_small_SRP links to Rfam database...	0.77	0.75	0.80	24	6075	9	1	5	3	8
SRP_00046	Bacteria_small_SRP links to Rfam database...	0.97	0.97	0.97	31	4721	2	0	1	1	1
SRP_00050	Metazoa_SRP links to Rfam database...	0.97	0.94	1.00	93	44757	3	0	0	3	6
SRP_00051	Bacteria_small_SRP links to Rfam database...	0.97	0.97	0.97	29	5430	3	0	1	2	1
SRP_00054	Bacteria_small_SRP links to Rfam database...	0.45	0.44	0.47	14	5535	16	0	16	0	18
SRP_00057	Bacteria_small_SRP links to Rfam database...	0.83	0.83	0.83	29	6293	7	1	5	1	6
SRP_00058	Bacteria_small_SRP links to Rfam database...	0.90	0.91	0.89	31	5743	8	1	3	4	3
SRP_00066	Metazoa_SRP links to Rfam database...	0.15	0.15	0.15	15	45349	87	8	79	0	85
SRP_00072	Bacteria_small_SRP links to Rfam database...	1.00	1.00	1.00	29	6299	1	0	0	1	0
SRP_00074	Bacteria_small_SRP links to Rfam database...	0.39	0.41	0.36	12	6522	25	3	18	4	17
SRP_00075	Bacteria_small_SRP links to Rfam database...	0.82	0.79	0.84	27	5533	8	0	5	3	7
SRP_00077	Bacteria_small_SRP links to Rfam database...	0.21	0.22	0.21	8	6631	31	4	27	0	29
SRP_00081	Bacteria_small_SRP links to Rfam database...	0.68	0.74	0.62	23	5528	14	1	13	0	8
SRP_00084	Bacteria_small_SRP links to Rfam database...	0.85	0.85	0.85	29	5426	5	1	4	0	5
SRP_00086	Metazoa_SRP links to Rfam database...	0.94	0.93	0.96	93	44156	8	0	4	4	7
SRP_00094	Bacteria_small_SRP links to Rfam database...	0.86	0.88	0.84	21	4070	4	0	4	0	3
SRP_00095	Bacteria_small_SRP links to Rfam database...	0.81	0.84	0.78	21	3978	6	1	5	0	4
SRP_00098	Bacteria_small_SRP links to Rfam database...	0.64	0.65	0.63	24	6403	17	1	13	3	13
SRP_00102	Metazoa_SRP links to Rfam database...	0.87	0.85	0.89	86	44454	13	1	10	2	15
SRP_00103	Metazoa_SRP links to Rfam database...	0.85	0.83	0.86	85	45352	16	0	14	2	17
SRP_00105	Bacteria_small_SRP links to Rfam database...	0.38	0.38	0.39	13	5532	20	3	17	0	21
SRP_00107	Bacteria_small_SRP links to Rfam database...	0.13	0.16	0.11	3	3628	26	6	18	2	16
SRP_00121	Bacteria_small_SRP links to Rfam database...	0.80	0.80	0.80	20	4253	6	0	5	1	5
SRP_00128	Bacteria_small_SRP links to Rfam database...	0.76	0.81	0.73	29	6746	12	1	10	1	7
SRP_00132	Bacteria_small_SRP links to Rfam database...	0.65	0.69	0.63	20	4819	15	0	12	3	9
SRP_00141	Bacteria_small_SRP links to Rfam database...	0.91	0.90	0.93	37	6288	3	1	2	0	4
SRP_00152	Plant_SRP links to Rfam database...	0.66	0.65	0.68	67	45654	33	1	31	1	36
SRP_00161	Bacteria_small_SRP links to Rfam database...	0.89	0.91	0.87	20	2827	3	0	3	0	2
SRP_00162	Bacteria_small_SRP links to Rfam database...	0.89	0.91	0.88	21	2902	4	0	3	1	2
SRP_00163	Bacteria_small_SRP links to Rfam database...	0.76	0.81	0.72	21	3457	8	2	6	0	5
SRP_00164	Bacteria_small_SRP links to Rfam database...	0.96	0.97	0.94	34	6867	3	1	1	1	1
SRP_00170	Bacteria_small_SRP links to Rfam database...	0.55	0.56	0.54	14	4069	13	0	12	1	11
SRP_00171	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	45348	103	15	88	0	88
SRP_00178	Plant_SRP links to Rfam database...	0.83	0.78	0.88	80	45662	13	1	10	2	22
SRP_00179	Plant_SRP links to Rfam database...	0.91	0.87	0.95	91	45960	9	1	4	4	14
SRP_00181	Plant_SRP links to Rfam database...	0.33	0.31	0.35	32	45965	59	1	58	0	70
SRP_00182	Plant_SRP links to Rfam database...	0.77	0.74	0.80	75	45962	20	3	16	1	26
SRP_00184	Plant_SRP links to Rfam database...	0.63	0.60	0.66	60	45965	35	7	24	4	40
SRP_00188	Plant_SRP links to Rfam database...	0.18	0.18	0.18	14	31047	64	9	55	0	65
SRP_00194	Bacteria_small_SRP links to Rfam database...	0.77	0.81	0.74	17	3217	6	0	6	0	4
SRP_00200	Bacteria_small_SRP links to Rfam database...	0.84	0.86	0.82	31	6865	9	1	6	2	5
SRP_00209	Bacteria_small_SRP links to Rfam database...	0.80	0.81	0.79	22	4628	6	0	6	0	5
SRP_00213	Bacteria_small_SRP links to Rfam database...	0.35	0.40	0.31	10	4154	22	5	17	0	15
SRP_00215	Bacteria_small_SRP links to Rfam database...	0.82	0.80	0.83	20	3216	4	0	4	0	5
SRP_00227	Bacteria_small_SRP links to Rfam database...	0.95	0.97	0.94	30	5119	2	1	1	0	1
SRP_00228	Metazoa_SRP links to Rfam database...	0.97	0.96	0.98	91	45358	10	0	2	8	4
SRP_00231	Bacteria_small_SRP links to Rfam database...	0.87	0.88	0.86	30	5425	5	1	4	0	4
SRP_00233	Bacteria_small_SRP links to Rfam database...	0.97	0.94	1.00	31	5120	0	0	0	0	2
SRP_00243	Bacteria_small_SRP links to Rfam database...	0.97	0.94	1.00	29	5122	1	0	0	1	2
SRP_00244	Bacteria_small_SRP links to Rfam database...	0.92	0.90	0.95	35	6866	3	1	1	1	4
SRP_00250	Bacteria_small_SRP links to Rfam database...	0.74	0.75	0.73	27	6749	13	1	9	3	9
SRP_00251	Bacteria_small_SRP links to Rfam database...	0.70	0.72	0.68	26	6983	12	1	11	0	10
SRP_00266	Bacteria_small_SRP links to Rfam database...	0.72	0.72	0.72	21	4627	9	1	7	1	8
SRP_00268	Bacteria_small_SRP links to Rfam database...	0.47	0.48	0.46	13	4158	15	4	11	0	14
SRP_00269	Bacteria_small_SRP links to Rfam database...	0.42	0.42	0.42	14	5017	19	3	16	0	19
SRP_00270	Bacteria_small_SRP links to Rfam database...	0.43	0.45	0.41	14	4622	20	2	18	0	17
SRP_00271	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	3215	25	3	22	0	24
SRP_00273	Bacteria_small_SRP links to Rfam database...	0.91	0.93	0.90	37	6745	6	1	3	2	3
SRP_00274	Bacteria_small_SRP links to Rfam database...	0.96	0.97	0.95	37	6864	3	1	1	1	1
SRP_00295	Bacteria_small_SRP links to Rfam database...	0.93	0.92	0.95	35	6866	4	1	1	2	3
SRP_00303	Bacteria_small_SRP links to Rfam database...	0.69	0.72	0.66	23	6635	12	1	11	0	9
SRP_00310	Bacteria_small_SRP links to Rfam database...	0.89	0.91	0.88	21	2902	4	0	3	1	2
SRP_00312	Bacteria_small_SRP links to Rfam database...	0.36	0.37	0.36	10	4158	18	4	14	0	17
SRP_00315	Bacteria_small_SRP links to Rfam database...	0.87	0.87	0.87	20	2903	3	0	3	0	3
SRP_00317	Metazoa_SRP links to Rfam database...	0.94	0.89	0.99	87	45062	9	0	1	8	11
SRP_00318	Bacteria_small_SRP links to Rfam database...	0.87	0.87	0.87	20	2980	3	0	3	0	3
SRP_00325	Bacteria_small_SRP links to Rfam database...	1.00	1.00	1.00	33	4338	0	0	0	0	0
SRP_00326	Bacteria_small_SRP links to Rfam database...	0.55	0.55	0.55	17	5019	14	3	11	0	14
SRP_00333	Bacteria_small_SRP links to Rfam database...	0.86	0.85	0.88	29	5118	4	0	4	0	5
SRP_00337	Bacteria_large_SRP links to Rfam database...	0.73	0.71	0.75	65	35424	24	2	20	2	26
SRP_00338	Bacteria_small_SRP links to Rfam database...	0.94	0.94	0.94	34	5424	2	0	2	0	2
SRP_00341	Bacteria_small_SRP links to Rfam database...	0.74	0.74	0.74	23	4722	8	0	8	0	8
SRP_00342	Bacteria_small_SRP links to Rfam database...	0.57	0.60	0.56	15	3978	17	1	11	5	10
SRP_00347	Metazoa_SRP links to Rfam database...	0.78	0.78	0.79	75	46570	26	4	16	6	21
SRP_00350	Bacteria_small_SRP links to Rfam database...	0.34	0.33	0.35	9	3890	17	2	15	0	18
SRP_00356	Bacteria_small_SRP links to Rfam database...	0.56	0.57	0.57	17	5020	13	1	12	0	13
SRP_00357	Bacteria_small_SRP links to Rfam database...	0.93	0.92	0.94	33	5321	3	1	1	1	3
SRP_00358	Bacteria_small_SRP links to Rfam database...	0.93	0.91	0.94	32	6294	3	1	1	1	3
SRP_00367	Bacteria_small_SRP links to Rfam database...	0.96	0.97	0.94	34	6750	2	1	1	0	1
SRP_00368	Metazoa_SRP links to Rfam database...	0.96	0.95	0.98	93	43861	8	0	2	6	5
SRP_00369	Bacteria_small_SRP links to Rfam database...	0.84	0.83	0.85	29	5744	7	1	4	2	6
SRP_00383	Bacteria_small_SRP links to Rfam database...	0.12	0.13	0.13	3	3216	21	3	18	0	21
TMR_00017	tmRNA links to Rfam database...	0.39	0.40	0.38	41	67053	73	15	52	6	61
TMR_00018	tmRNA links to Rfam database...	0.12	0.13	0.12	12	64521	93	11	76	6	80
TMR_00038	tmRNA links to Rfam database...	0.25	0.25	0.25	28	71141	88	12	72	4	82
TMR_00042	tmRNA links to Rfam database...	0.24	0.24	0.24	24	62735	79	9	67	3	74
TMR_00046	tmRNA links to Rfam database...	0.54	0.56	0.53	54	62733	51	11	37	3	42
TMR_00048	tmRNA links to Rfam database...	0.33	0.35	0.31	33	64873	79	9	65	5	62
TMR_00080	tmRNA links to Rfam database...	0.55	0.56	0.53	54	70398	51	16	32	3	42
TMR_00082	tmRNA links to Rfam database...	0.59	0.58	0.59	56	67801	44	12	27	5	40
TMR_00123	tmRNA links to Rfam database...	0.49	0.49	0.51	49	66333	53	10	38	5	52
TMR_00137	tmRNA links to Rfam database...	0.25	0.27	0.24	24	60976	79	19	56	4	65
TMR_00142	tmRNA links to Rfam database...	0.56	0.61	0.53	62	70758	56	22	34	0	40
TMR_00207	tmRNA links to Rfam database...	0.36	0.35	0.36	36	72291	70	5	58	7	67
TMR_00257	tmRNA links to Rfam database...	0.25	0.24	0.26	24	67068	73	8	61	4	74
TMR_00271	tmRNA links to Rfam database...	0.49	0.48	0.50	44	64173	53	9	35	9	47
TMR_00332	tmRNA links to Rfam database...	0.39	0.38	0.39	38	67064	63	10	49	4	61
TMR_00366	tmRNA links to Rfam database...	0.28	0.28	0.28	28	67797	84	12	59	13	72
TMR_00378	tmRNA links to Rfam database...	0.28	0.30	0.27	29	67790	88	7	70	11	68
TMR_00399	tmRNA links to Rfam database...	0.16	0.17	0.15	16	64871	97	27	66	4	78
TMR_00404	tmRNA links to Rfam database...	0.49	0.52	0.46	48	67424	67	10	46	11	44
TMR_00427	tmRNA links to Rfam database...	0.31	0.31	0.31	30	67432	71	11	55	5	67
TMR_00443	tmRNA links to Rfam database...	0.44	0.44	0.44	46	67057	60	14	44	2	58
TMR_00451	tmRNA links to Rfam database...	0.17	0.19	0.16	17	63441	88	16	72	0	72
TMR_00458	tmRNA links to Rfam database...	0.24	0.24	0.24	22	63454	78	7	63	8	71
TMR_00469	tmRNA links to Rfam database...	0.39	0.41	0.38	41	64511	68	11	57	0	59
TMR_00472	tmRNA links to Rfam database...	0.38	0.40	0.36	39	64511	73	24	46	3	58
TMR_00519	tmRNA links to Rfam database...	0.14	0.15	0.13	14	63083	103	16	77	10	81
TMR_00520	tmRNA links to Rfam database...	0.42	0.43	0.41	43	63084	72	17	46	9	56
TMR_00522	tmRNA links to Rfam database...	0.36	0.36	0.36	35	63093	71	11	51	9	62
TMR_00528	tmRNA links to Rfam database...	0.13	0.13	0.12	13	63081	106	12	84	10	84
TMR_00540	tmRNA links to Rfam database...	0.37	0.37	0.37	38	73433	74	8	57	9	66
TMR_00568	tmRNA links to Rfam database...	0.59	0.59	0.60	58	60630	47	3	35	9	41
TMR_00571	tmRNA links to Rfam database...	0.59	0.60	0.58	59	60624	48	8	35	5	40
TMR_00580	tmRNA links to Rfam database...	0.53	0.53	0.54	53	60627	55	15	31	9	47
TMR_00584	tmRNA links to Rfam database...	0.40	0.42	0.38	41	60967	73	8	59	6	56
TMR_00586	tmRNA links to Rfam database...	0.23	0.25	0.21	24	60962	90	19	70	1	73
TMR_00616	tmRNA links to Rfam database...	0.36	0.37	0.36	37	67057	72	18	49	5	62
TMR_00699	tmRNA links to Rfam database...	0.22	0.23	0.22	23	67056	84	11	71	2	79
TMR_00702	tmRNA links to Rfam database...	0.16	0.16	0.16	16	67059	90	10	76	4	84
TMR_00703	tmRNA links to Rfam database...	0.31	0.31	0.30	31	67426	75	14	57	4	68

^top

Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.

Table of contents:

Overview

Performance plots

Performance of Murlet(20) - scored higher in this pairwise comparison

1. Total counts & total scores for Murlet(20)

2. Individual counts for Murlet(20) [ download as .csv ]

Performance of RNAfold - scored lower in this pairwise comparison

1. Total counts & total scores for RNAfold

2. Individual counts for RNAfold [ download as .csv ]