CompaRNA - on-line benchmarks of RNA structure prediction methods

Laboratory of Structural Bioinformatics @ Adam Mickiewicz University in Poznan

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Overview

Metric	Murlet(20)		Vsfold4
MCC	0.634	>	0.391
Average MCC ± 95% Confidence Intervals	0.676 ± 0.019	>	0.478 ± 0.029
Sensitivity	0.500	>	0.357
Positive Predictive Value	0.805	>	0.431
Total TP	12786	>	9128
Total TN	11228376	>	11223065
Total FP	3703	<	12807
Total FP CONTRA	387	<	1387
Total FP INCONS	2703	<	10672
Total FP COMP	613	<	748
Total FN	12778	<	16436
P-value	3.56938820447e-08

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Performance plots

Comparison of performance of Murlet(20) and Vsfold4. Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data (individual counts for Murlet(20) and Vsfold4).
Average Matthews Correlation Coefficients (MCC) with 95% confidence intervals (CIs) were plotted for different RNA families, for which at least 3 members were present in the benchmarking dataset. 'n' denotes the number of MCCs used to calculate the average and CI. See tables below for raw data (individual counts for Murlet(20) and Vsfold4).
Comparison of average Matthews Correlation Coefficients (MCCs) for Murlet(20) and Vsfold4. The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data (individual counts for Murlet(20) and Vsfold4).

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Performance of Murlet(20) - scored higher in this pairwise comparison

1. Total counts & total scores for Murlet(20)

Total Base Pair Counts
Total TP	12786
Total TN	11228376
Total FP	3703
Total FP CONTRA	387
Total FP INCONS	2703
Total FP COMP	613
Total FN	12778

Total Scores
MCC	0.634
Average MCC ± 95% Confidence Intervals	0.676 ± 0.019
Sensitivity	0.500
Positive Predictive Value	0.805
Nr of predictions	491

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2. Individual counts for Murlet(20) [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00004	RNaseP_bact_a links to Rfam database...	0.46	0.34	0.61	33	47841	21	1	20	0	64
ASE_00007	RNaseP_bact_a links to Rfam database...	0.71	0.57	0.89	63	59614	8	2	6	0	47
ASE_00018	RNaseP_bact_a links to Rfam database...	0.61	0.45	0.82	60	80528	13	3	10	0	74
ASE_00022	RNaseP_bact_b links to Rfam database...	0.67	0.50	0.89	62	82958	15	0	8	7	62
ASE_00028	RNaseP_bact_b links to Rfam database...	0.56	0.40	0.77	51	84600	15	5	10	0	75
ASE_00035	RNaseP_bact_a links to Rfam database...	0.62	0.49	0.79	58	70427	17	4	11	2	60
ASE_00040	RNaseP_bact_a links to Rfam database...	0.62	0.43	0.90	57	78940	6	0	6	0	76
ASE_00045	RNaseP_bact_b links to Rfam database...	0.73	0.56	0.94	45	47230	4	0	3	1	35
ASE_00064	RNaseP_bact_a links to Rfam database...	0.55	0.39	0.76	35	45405	14	3	8	3	54
ASE_00068	RNaseP_bact_a links to Rfam database...	0.62	0.42	0.90	36	37635	4	3	1	0	49
ASE_00077	RNaseP_bact_a links to Rfam database...	0.48	0.35	0.67	30	45105	18	0	15	3	56
ASE_00078	RNaseP_bact_a links to Rfam database...	0.64	0.53	0.79	44	43015	12	3	9	0	39
ASE_00080	RNaseP_bact_a links to Rfam database...	0.31	0.21	0.46	26	71574	31	3	28	0	97
ASE_00081	RNaseP_bact_a links to Rfam database...	0.73	0.58	0.93	56	49710	5	0	4	1	41
ASE_00082	RNaseP_bact_a links to Rfam database...	0.27	0.20	0.37	23	70438	42	2	37	3	93
ASE_00083	RNaseP_bact_a links to Rfam database...	0.54	0.39	0.75	43	62424	14	2	12	0	67
ASE_00084	RNaseP_bact_a links to Rfam database...	0.53	0.36	0.77	36	53581	12	0	11	1	63
ASE_00087	RNaseP_bact_a links to Rfam database...	0.35	0.21	0.58	30	88358	22	0	22	0	114
ASE_00092	RNaseP_bact_a links to Rfam database...	0.58	0.40	0.85	45	63493	10	0	8	2	68
ASE_00104	RNaseP_bact_a links to Rfam database...	0.51	0.38	0.69	45	64196	20	1	19	0	74
ASE_00107	RNaseP_bact_a links to Rfam database...	0.64	0.48	0.86	61	73082	13	2	8	3	66
ASE_00114	RNaseP_bact_b links to Rfam database...	0.46	0.39	0.56	30	45397	28	2	22	4	47
ASE_00115	RNaseP_bact_a links to Rfam database...	0.46	0.30	0.71	30	54573	12	1	11	0	71
ASE_00119	RNaseP_bact_a links to Rfam database...	0.11	0.08	0.16	9	62779	48	2	45	1	99
ASE_00123	RNaseP_bact_a links to Rfam database...	0.55	0.40	0.76	34	38458	11	0	11	0	51
ASE_00135	RNaseP_bact_a links to Rfam database...	0.34	0.24	0.49	26	63137	29	3	24	2	83
ASE_00138	RNaseP_bact_a links to Rfam database...	0.60	0.47	0.76	38	40420	13	0	12	1	43
ASE_00142	RNaseP_bact_a links to Rfam database...	0.52	0.40	0.68	49	67089	23	1	22	0	73
ASE_00146	RNaseP_bact_a links to Rfam database...	0.70	0.56	0.87	69	70797	13	0	10	3	55
ASE_00153	RNaseP_nuc links to Rfam database...	0.34	0.23	0.50	17	57596	26	3	14	9	56
ASE_00161	RNaseP_bact_b links to Rfam database...	0.68	0.56	0.83	49	53569	16	0	10	6	38
ASE_00163	RNaseP_bact_a links to Rfam database...	0.47	0.32	0.70	30	53258	13	0	13	0	63
ASE_00170	RNaseP_bact_a links to Rfam database...	0.52	0.37	0.74	34	48782	12	0	12	0	59
ASE_00174	RNaseP_bact_a links to Rfam database...	0.30	0.23	0.39	25	61011	43	2	37	4	84
ASE_00179	RNaseP_bact_a links to Rfam database...	0.49	0.40	0.61	34	44197	22	0	22	0	50
ASE_00180	RNaseP_bact_a links to Rfam database...	0.70	0.55	0.90	55	51299	6	2	4	0	45
ASE_00182	RNaseP_bact_a links to Rfam database...	0.24	0.15	0.41	20	84206	31	1	28	2	116
ASE_00184	RNaseP_bact_a links to Rfam database...	0.58	0.42	0.80	43	54561	11	2	9	0	59
ASE_00185	RNaseP_bact_a links to Rfam database...	0.28	0.16	0.48	21	73492	23	0	23	0	107
ASE_00186	RNaseP_bact_a links to Rfam database...	0.61	0.45	0.84	59	78933	11	1	10	0	73
ASE_00190	RNaseP_bact_b links to Rfam database...	0.38	0.22	0.67	20	45421	12	0	10	2	70
ASE_00212	RNaseP_bact_a links to Rfam database...	0.55	0.39	0.78	58	93887	16	1	15	0	90
ASE_00214	RNaseP_bact_a links to Rfam database...	0.40	0.27	0.58	28	56232	21	1	19	1	75
ASE_00215	RNaseP_bact_a links to Rfam database...	0.46	0.31	0.69	31	48471	14	4	10	0	68
ASE_00217	RNaseP_bact_a links to Rfam database...	0.66	0.50	0.87	45	40418	7	1	6	0	45
ASE_00221	RNaseP_bact_a links to Rfam database...	0.58	0.44	0.78	51	64555	14	0	14	0	66
ASE_00228	RNaseP_bact_a links to Rfam database...	0.53	0.44	0.63	38	46911	23	1	21	1	48
ASE_00229	RNaseP_bact_a links to Rfam database...	0.61	0.48	0.76	42	42431	13	3	10	0	45
ASE_00238	RNaseP_bact_a links to Rfam database...	0.45	0.30	0.68	34	64211	16	2	14	0	80
ASE_00241	RNaseP_bact_a links to Rfam database...	0.66	0.55	0.79	48	43895	16	2	11	3	39
ASE_00248	RNaseP_bact_a links to Rfam database...	0.76	0.63	0.91	72	62402	7	0	7	0	42
ASE_00255	RNaseP_bact_a links to Rfam database...	0.53	0.39	0.72	51	74620	21	1	19	1	79
ASE_00257	RNaseP_bact_a links to Rfam database...	0.55	0.43	0.69	42	50979	19	0	19	0	55
ASE_00267	RNaseP_bact_a links to Rfam database...	0.76	0.61	0.95	54	45093	4	2	1	1	34
ASE_00270	RNaseP_bact_a links to Rfam database...	0.21	0.14	0.32	18	72333	41	0	39	2	110
ASE_00279	RNaseP_bact_a links to Rfam database...	0.63	0.48	0.84	48	53244	9	1	8	0	53
ASE_00280	RNaseP_bact_a links to Rfam database...	0.67	0.54	0.84	53	51940	10	3	7	0	45
ASE_00281	RNaseP_bact_a links to Rfam database...	0.74	0.60	0.91	53	44493	5	0	5	0	35
ASE_00283	RNaseP_bact_a links to Rfam database...	0.55	0.41	0.73	44	61716	16	0	16	0	63
ASE_00285	RNaseP_bact_a links to Rfam database...	0.45	0.33	0.62	40	68941	25	1	24	0	82
ASE_00292	RNaseP_bact_a links to Rfam database...	0.52	0.36	0.74	50	81742	18	1	17	0	88
ASE_00297	RNaseP_bact_a links to Rfam database...	0.59	0.41	0.85	40	52928	10	0	7	3	58
ASE_00298	RNaseP_bact_a links to Rfam database...	0.22	0.15	0.32	17	67475	36	4	32	0	96
ASE_00305	RNaseP_bact_b links to Rfam database...	0.62	0.51	0.75	43	54558	21	1	13	7	42
ASE_00318	RNaseP_bact_b links to Rfam database...	0.66	0.49	0.89	58	80135	16	2	5	9	60
ASE_00321	RNaseP_bact_b links to Rfam database...	0.66	0.52	0.84	46	54560	18	1	8	9	42
ASE_00328	RNaseP_bact_b links to Rfam database...	0.59	0.48	0.72	54	72696	27	5	16	6	58
ASE_00332	RNaseP_bact_a links to Rfam database...	0.63	0.47	0.83	65	81732	13	2	11	0	73
ASE_00335	RNaseP_bact_b links to Rfam database...	0.60	0.48	0.76	56	75392	19	5	13	1	60
ASE_00340	RNaseP_bact_a links to Rfam database...	0.45	0.34	0.60	29	46008	22	3	16	3	56
ASE_00353	RNaseP_bact_a links to Rfam database...	0.50	0.35	0.71	37	57918	15	0	15	0	70
ASE_00361	RNaseP_bact_a links to Rfam database...	0.57	0.39	0.82	50	75405	11	1	10	0	77
ASE_00362	RNaseP_bact_a links to Rfam database...	0.56	0.38	0.81	35	48162	12	0	8	4	56
ASE_00363	RNaseP_bact_a links to Rfam database...	0.61	0.44	0.85	41	51312	7	0	7	0	53
ASE_00364	RNaseP_bact_a links to Rfam database...	0.58	0.38	0.89	40	54240	5	0	5	0	65
ASE_00366	RNaseP_bact_a links to Rfam database...	0.49	0.36	0.67	35	58601	19	0	17	2	63
ASE_00367	RNaseP_bact_a links to Rfam database...	0.71	0.57	0.89	49	43016	6	2	4	0	37
ASE_00372	RNaseP_bact_a links to Rfam database...	0.40	0.31	0.53	31	51944	28	3	25	0	69
ASE_00376	RNaseP_bact_a links to Rfam database...	0.57	0.40	0.82	42	56902	9	2	7	0	63
ASE_00382	RNaseP_bact_a links to Rfam database...	0.65	0.51	0.83	43	41853	9	2	7	0	41
ASE_00384	RNaseP_bact_a links to Rfam database...	0.59	0.43	0.80	40	48466	10	2	8	0	52
ASE_00386	RNaseP_bact_a links to Rfam database...	0.54	0.36	0.80	35	50359	9	1	8	0	61
ASE_00387	RNaseP_bact_a links to Rfam database...	0.64	0.45	0.90	47	55893	5	0	5	0	57
ASE_00388	RNaseP_bact_a links to Rfam database...	0.53	0.38	0.72	34	45706	16	1	12	3	55
ASE_00390	RNaseP_bact_a links to Rfam database...	0.77	0.64	0.93	54	42137	6	1	3	2	31
ASE_00393	RNaseP_bact_a links to Rfam database...	0.55	0.41	0.73	38	47843	15	3	11	1	55
ASE_00394	RNaseP_bact_a links to Rfam database...	0.56	0.41	0.78	38	46922	11	1	10	0	55
ASE_00395	RNaseP_bact_a links to Rfam database...	0.68	0.51	0.90	43	41568	5	0	5	0	41
ASE_00396	RNaseP_bact_a links to Rfam database...	0.62	0.47	0.81	39	41568	9	0	9	0	44
ASE_00397	RNaseP_bact_a links to Rfam database...	0.63	0.45	0.89	47	54562	9	1	5	3	58
ASE_00398	RNaseP_bact_a links to Rfam database...	0.49	0.32	0.75	33	55901	12	0	11	1	71
ASE_00400	RNaseP_bact_a links to Rfam database...	0.47	0.36	0.61	38	57908	25	3	21	1	68
ASE_00402	RNaseP_bact_a links to Rfam database...	0.55	0.35	0.86	30	42451	5	2	3	0	55
ASE_00404	RNaseP_bact_a links to Rfam database...	0.72	0.55	0.94	47	43021	4	0	3	1	38
ASE_00406	RNaseP_bact_a links to Rfam database...	0.60	0.44	0.84	41	48779	8	0	8	0	53
ASE_00411	RNaseP_bact_a links to Rfam database...	0.59	0.39	0.88	35	49415	5	0	5	0	54
ASE_00412	RNaseP_bact_a links to Rfam database...	0.51	0.32	0.79	34	58268	11	0	9	2	71
ASE_00416	RNaseP_bact_a links to Rfam database...	0.45	0.33	0.62	42	77353	26	1	25	0	85
ASE_00419	RNaseP_bact_a links to Rfam database...	0.49	0.33	0.74	34	54900	12	2	10	0	69
ASE_00422	RNaseP_bact_a links to Rfam database...	0.50	0.35	0.70	33	46924	14	0	14	0	61
ASE_00423	RNaseP_bact_a links to Rfam database...	0.65	0.53	0.79	58	56880	15	0	15	0	51
ASE_00427	RNaseP_nuc links to Rfam database...	0.42	0.43	0.41	20	40706	41	10	19	12	26
ASE_00428	RNaseP_bact_a links to Rfam database...	0.47	0.34	0.67	42	76573	21	4	17	0	83
ASE_00430	RNaseP_bact_a links to Rfam database...	0.50	0.37	0.68	36	46918	17	0	17	0	61
ASE_00437	RNaseP_bact_a links to Rfam database...	0.42	0.32	0.56	43	79324	34	3	31	0	92
ASE_00448	RNaseP_bact_a links to Rfam database...	0.63	0.49	0.82	55	64194	12	3	9	0	57
ASE_00451	RNaseP_bact_a links to Rfam database...	0.56	0.41	0.76	51	70809	16	1	15	0	74
CRW_00548	5S_rRNA links to Rfam database...	0.74	0.58	0.96	22	7358	3	0	1	2	16
CRW_00552	5S_rRNA links to Rfam database...	0.83	0.69	1.00	27	7113	1	0	0	1	12
CRW_00555	5S_rRNA links to Rfam database...	0.87	0.75	1.00	30	7596	2	0	0	2	10
CRW_00567	5S_rRNA links to Rfam database...	0.87	0.75	1.00	30	7473	0	0	0	0	10
CRW_00570	5S_rRNA links to Rfam database...	0.81	0.70	0.93	26	6875	3	0	2	1	11
CRW_00573	5S_rRNA links to Rfam database...	0.87	0.75	1.00	30	7110	1	0	0	1	10
CRW_01484	5S_rRNA links to Rfam database...	0.78	0.62	1.00	24	7479	0	0	0	0	15
CRW_01485	5S_rRNA links to Rfam database...	0.67	0.54	0.84	21	7478	4	0	4	0	18
CRW_01487	5S_rRNA links to Rfam database...	0.75	0.61	0.93	25	7476	2	0	2	0	16
CRW_01489	5S_rRNA links to Rfam database...	0.82	0.67	1.00	26	7477	0	0	0	0	13
CRW_01491	5S_rRNA links to Rfam database...	0.75	0.63	0.90	27	8355	3	0	3	0	16
CRW_01492	5S_rRNA links to Rfam database...	0.80	0.64	1.00	27	7599	0	0	0	0	15
CRW_01494	5S_rRNA links to Rfam database...	0.72	0.53	1.00	21	7119	1	0	0	1	19
CRW_01497	5S_rRNA links to Rfam database...	0.77	0.63	0.96	25	7114	2	0	1	1	15
CRW_01498	5S_rRNA links to Rfam database...	0.76	0.58	1.00	25	8103	0	0	0	0	18
CRW_01499	5S_rRNA links to Rfam database...	0.62	0.49	0.80	20	7976	5	0	5	0	21
CRW_01500	5S_rRNA links to Rfam database...	0.73	0.58	0.92	22	7726	2	0	2	0	16
CRW_01501	5S_rRNA links to Rfam database...	0.71	0.51	1.00	23	8492	0	0	0	0	22
CRW_01508	5S_rRNA links to Rfam database...	0.77	0.62	0.96	26	7974	1	0	1	0	16
CRW_01532	5S_rRNA links to Rfam database...	0.87	0.81	0.94	30	7108	5	0	2	3	7
CRW_01533	5S_rRNA links to Rfam database...	0.80	0.65	1.00	24	7116	1	0	0	1	13
CRW_01534	5S_rRNA links to Rfam database...	0.86	0.78	0.94	29	7109	5	0	2	3	8
CRW_01535	5S_rRNA links to Rfam database...	0.75	0.57	1.00	21	7119	3	0	0	3	16
CRW_01536	5S_rRNA links to Rfam database...	0.91	0.84	1.00	31	6990	1	0	0	1	6
CRW_01537	5S_rRNA links to Rfam database...	0.92	0.89	0.94	33	7105	5	0	2	3	4
CRW_01539	5S_rRNA links to Rfam database...	0.90	0.86	0.94	32	7106	5	0	2	3	5
CRW_01540	5S_rRNA links to Rfam database...	0.90	0.86	0.94	32	7106	5	0	2	3	5
CRW_01541	5S_rRNA links to Rfam database...	0.68	0.51	0.90	19	7119	4	0	2	2	18
CRW_01542	5S_rRNA links to Rfam database...	0.89	0.84	0.94	31	7107	5	0	2	3	6
CRW_01544	5S_rRNA links to Rfam database...	0.67	0.59	0.76	22	7111	8	0	7	1	15
CRW_01548	5S_rRNA links to Rfam database...	0.92	0.89	0.94	33	6986	5	0	2	3	4
CRW_01555	5S_rRNA links to Rfam database...	0.90	0.86	0.94	32	9011	3	0	2	1	5
CRW_01556	5S_rRNA links to Rfam database...	0.80	0.73	0.87	27	7109	7	0	4	3	10
CRW_01557	5S_rRNA links to Rfam database...	0.92	0.89	0.94	33	7105	6	0	2	4	4
CRW_01559	5S_rRNA links to Rfam database...	0.90	0.86	0.94	32	7226	5	0	2	3	5
CRW_01562	5S_rRNA links to Rfam database...	0.76	0.62	0.92	23	7115	5	0	2	3	14
CRW_01563	5S_rRNA links to Rfam database...	0.87	0.81	0.94	30	6871	5	0	2	3	7
CRW_01566	5S_rRNA links to Rfam database...	0.75	0.57	1.00	21	7119	0	0	0	0	16
CRW_01568	5S_rRNA links to Rfam database...	0.78	0.70	0.87	26	7110	5	0	4	1	11
CRW_01569	5S_rRNA links to Rfam database...	0.84	0.76	0.93	28	7110	3	0	2	1	9
CRW_01570	5S_rRNA links to Rfam database...	0.88	0.78	1.00	29	7111	2	0	0	2	8
CRW_01572	5S_rRNA links to Rfam database...	0.90	0.86	0.94	32	6987	6	0	2	4	5
CRW_01573	5S_rRNA links to Rfam database...	0.87	0.81	0.94	30	7228	3	0	2	1	7
CRW_01578	5S_rRNA links to Rfam database...	0.89	0.84	0.94	31	7107	5	0	2	3	6
CRW_01580	5S_rRNA links to Rfam database...	0.89	0.84	0.94	31	7107	3	0	2	1	6
CRW_01581	5S_rRNA links to Rfam database...	0.88	0.78	1.00	29	7111	1	0	0	1	8
CRW_01583	5S_rRNA links to Rfam database...	0.87	0.81	0.94	30	7108	5	0	2	3	7
CRW_01584	5S_rRNA links to Rfam database...	0.82	0.68	1.00	25	7115	1	0	0	1	12
CRW_01590	5S_rRNA links to Rfam database...	0.72	0.57	0.91	21	7117	5	0	2	3	16
CRW_01593	5S_rRNA links to Rfam database...	0.87	0.81	0.94	30	7108	3	0	2	1	7
CRW_01595	5S_rRNA links to Rfam database...	0.89	0.84	0.94	31	8482	5	0	2	3	6
CRW_01599	5S_rRNA links to Rfam database...	0.89	0.84	0.94	31	7107	5	0	2	3	6
CRW_01603	5S_rRNA links to Rfam database...	0.85	0.73	1.00	27	7113	2	0	0	2	10
CRW_01605	5S_rRNA links to Rfam database...	0.80	0.76	0.85	28	7107	8	0	5	3	9
CRW_01606	5S_rRNA links to Rfam database...	0.64	0.51	0.79	19	7116	7	0	5	2	18
CRW_01608	5S_rRNA links to Rfam database...	0.86	0.78	0.94	29	8354	3	0	2	1	8
CRW_01616	5S_rRNA links to Rfam database...	0.93	0.86	1.00	32	7108	1	0	0	1	5
CRW_01617	5S_rRNA links to Rfam database...	0.84	0.76	0.93	28	7110	5	0	2	3	9
CRW_01620	5S_rRNA links to Rfam database...	0.93	0.86	1.00	32	6989	3	0	0	3	5
CRW_01621	5S_rRNA links to Rfam database...	0.67	0.54	0.83	20	7116	6	0	4	2	17
CRW_01623	5S_rRNA links to Rfam database...	0.90	0.86	0.94	32	7106	3	0	2	1	5
CRW_01625	5S_rRNA links to Rfam database...	0.67	0.59	0.76	22	7111	9	0	7	2	15
PDB_00012	mir-TAR links to Rfam database...	1.00	1.00	1.00	7	399	1	0	0	1	0
PDB_00070	tRNA links to Rfam database...	0.76	0.71	0.81	17	2829	4	0	4	0	7
PDB_00213	Gammaretro_CES links to Rfam database...	0.73	0.59	0.92	24	5024	2	0	2	0	17
PDB_00229	tRNA links to Rfam database...	0.67	0.61	0.74	14	2756	5	0	5	0	9
PDB_00327	tRNA links to Rfam database...	0.93	0.87	1.00	20	3061	0	0	0	0	3
PDB_00362	tRNA links to Rfam database...	0.84	0.82	0.86	18	2829	3	0	3	0	4
PDB_00402	tRNA links to Rfam database...	0.91	0.87	0.95	20	2754	1	0	1	0	3
PDB_00431	tRNA links to Rfam database...	0.95	0.90	1.00	18	2193	0	0	0	0	2
PDB_00474	tRNA links to Rfam database...	0.83	0.70	1.00	16	2685	0	0	0	0	7
PDB_00553	mir-TAR links to Rfam database...	0.53	0.36	0.80	4	460	1	0	1	0	7
PDB_00571	tRNA links to Rfam database...	0.59	0.52	0.68	13	3302	7	0	6	1	12
PDB_00667	tRNA links to Rfam database...	0.88	0.86	0.90	19	2829	2	0	2	0	3
PDB_00741	Entero_5_CRE links to Rfam database...	0.72	0.53	1.00	9	694	0	0	0	0	8
PDB_00810	s2m links to Rfam database...	0.41	0.35	0.50	6	1069	7	0	6	1	11
PDB_00828	Purine links to Rfam database...	0.84	0.70	1.00	19	2466	0	0	0	0	8
PDB_00829	Purine links to Rfam database...	0.82	0.67	1.00	16	2262	0	0	0	0	8
PDB_00876	HIV_FE links to Rfam database...	0.45	0.40	0.53	8	975	7	0	7	0	12
PDB_01002	tRNA links to Rfam database...	0.79	0.71	0.88	15	2758	4	0	2	2	6
PDB_01020	Purine links to Rfam database...	0.83	0.70	1.00	16	2262	0	0	0	0	7
PDB_01050	UnaL2 links to Rfam database...	0.68	0.46	1.00	6	624	2	0	0	2	7
PDB_01053	tRNA links to Rfam database...	1.00	1.00	1.00	16	1362	0	0	0	0	0
PDB_01073	SAM links to Rfam database...	0.66	0.44	1.00	15	4356	1	0	0	1	19
PDB_01114	TPP links to Rfam database...	0.77	0.59	1.00	16	2834	0	0	0	0	11
PDB_01152	HIV_FS2 links to Rfam database...	0.76	0.64	0.90	9	551	1	0	1	0	5
PDB_01236	ykoK links to Rfam database...	0.71	0.52	0.97	28	11599	3	0	1	2	26
RFA_00389	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	2	0	0	2	1
RFA_00390	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	3	0	0	3	1
RFA_00391	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	2	0	0	2	1
RFA_00396	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	2	0	0	2	1
RFA_00402	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	2	0	0	2	1
RFA_00409	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	2	0	0	2	1
RFA_00416	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1471	2	0	0	2	1
RFA_00433	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00434	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	2	0	0	2	1
RFA_00436	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	1	0	0	1	1
RFA_00440	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1471	3	0	0	3	1
RFA_00442	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	2	0	0	2	1
RFA_00444	Hammerhead_3 links to Rfam database...	0.82	0.67	1.00	10	1530	2	0	0	2	5
RFA_00583	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4935	7	0	0	7	0
RFA_00584	Y_RNA links to Rfam database...	0.93	0.87	1.00	13	2913	1	0	0	1	2
RFA_00585	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4836	0	0	0	0	0
RFA_00586	Y_RNA links to Rfam database...	0.86	0.73	1.00	11	3905	2	0	0	2	4
RFA_00587	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4836	7	0	0	7	0
RFA_00588	Y_RNA links to Rfam database...	0.97	0.93	1.00	14	4546	10	0	0	10	1
RFA_00589	Y_RNA links to Rfam database...	0.93	0.87	1.00	13	4358	0	0	0	0	2
RFA_00594	Y_RNA links to Rfam database...	0.89	0.80	1.00	12	2763	1	0	0	1	3
RFA_00596	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	5980	17	0	0	17	0
RFA_00601	Telomerase-vert links to Rfam database...	0.31	0.23	0.42	26	99173	43	3	33	7	88
RFA_00658	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	1128	0	0	0	0	14
RFA_00664	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	990	0	0	0	0	14
RFA_00667	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	990	0	0	0	0	14
RFA_00668	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	990	0	0	0	0	14
RFA_00672	Hammerhead_1 links to Rfam database...	0.55	0.31	1.00	4	899	0	0	0	0	9
RFA_00673	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	1128	0	0	0	0	14
RFA_00674	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	1128	0	0	0	0	14
RFA_00675	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	990	0	0	0	0	14
RFA_00677	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	990	0	0	0	0	14
RFA_00678	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	946	0	0	0	0	14
RFA_00680	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	1128	0	0	0	0	14
RFA_00704	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	990	0	0	0	0	14
RFA_00707	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	1035	0	0	0	0	14
RFA_00715	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	946	0	0	0	0	14
RFA_00717	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	903	0	0	0	0	14
RFA_00730	s2m links to Rfam database...	0.75	0.75	0.75	9	891	4	0	3	1	3
RFA_00731	s2m links to Rfam database...	0.91	0.83	1.00	10	893	0	0	0	0	2
RFA_00733	s2m links to Rfam database...	1.00	1.00	1.00	12	891	0	0	0	0	0
RFA_00734	s2m links to Rfam database...	0.75	0.75	0.75	9	891	4	0	3	1	3
RFA_00736	s2m links to Rfam database...	1.00	1.00	1.00	12	891	0	0	0	0	0
RFA_00737	s2m links to Rfam database...	0.75	0.75	0.75	9	891	4	0	3	1	3
RFA_00745	s2m links to Rfam database...	0.75	0.75	0.75	9	934	4	0	3	1	3
RFA_00749	s2m links to Rfam database...	0.75	0.75	0.75	9	891	4	0	3	1	3
RFA_00758	s2m links to Rfam database...	0.75	0.75	0.75	9	891	5	0	3	2	3
RFA_00762	s2m links to Rfam database...	1.00	1.00	1.00	12	891	0	0	0	0	0
RFA_00763	s2m links to Rfam database...	1.00	1.00	1.00	12	891	1	0	0	1	0
RFA_00764	s2m links to Rfam database...	1.00	1.00	1.00	12	891	0	0	0	0	0
RFA_00765	s2m links to Rfam database...	0.75	0.75	0.75	9	891	4	0	3	1	3
RFA_00786	Gammaretro_CES links to Rfam database...	0.83	0.75	0.92	24	5024	2	0	2	0	8
RFA_00791	Gammaretro_CES links to Rfam database...	0.83	0.75	0.92	24	5125	2	0	2	0	8
RFA_00792	Gammaretro_CES links to Rfam database...	0.83	0.75	0.92	24	5024	2	0	2	0	8
RFA_00801	Gammaretro_CES links to Rfam database...	0.80	0.72	0.88	23	5024	3	0	3	0	9
SPR_00007	tRNA links to Rfam database...	0.81	0.81	0.81	17	2829	4	0	4	0	4
SPR_00009	tRNA links to Rfam database...	0.72	0.70	0.74	14	2831	5	0	5	0	6
SPR_00010	tRNA links to Rfam database...	0.86	0.86	0.86	18	2829	3	0	3	0	3
SPR_00012	tRNA links to Rfam database...	0.82	0.80	0.84	16	2831	4	0	3	1	4
SPR_00013	tRNA links to Rfam database...	0.77	0.75	0.79	15	2831	5	0	4	1	5
SPR_00016	tRNA links to Rfam database...	0.81	0.81	0.81	17	2829	4	0	4	0	4
SPR_00017	tRNA links to Rfam database...	0.70	0.67	0.74	14	2831	5	0	5	0	7
SPR_00025	tRNA links to Rfam database...	0.90	0.90	0.90	18	2906	3	0	2	1	2
SPR_00026	tRNA links to Rfam database...	0.81	0.81	0.81	17	2905	4	0	4	0	4
SPR_00027	tRNA links to Rfam database...	0.90	0.90	0.90	19	2905	2	0	2	0	2
SPR_00036	tRNA links to Rfam database...	0.78	0.70	0.88	14	2759	3	0	2	1	6
SPR_00045	tRNA links to Rfam database...	0.86	0.82	0.90	18	2830	2	0	2	0	4
SPR_00064	tRNA links to Rfam database...	0.62	0.52	0.73	11	2835	4	0	4	0	10
SPR_00065	tRNA links to Rfam database...	0.65	0.57	0.75	12	2834	4	0	4	0	9
SPR_00066	tRNA links to Rfam database...	0.90	0.90	0.90	19	2829	2	0	2	0	2
SPR_00068	tRNA links to Rfam database...	0.90	0.90	0.90	19	2829	2	0	2	0	2
SPR_00070	tRNA links to Rfam database...	0.86	0.86	0.86	18	2829	3	0	3	0	3
SPR_00074	tRNA links to Rfam database...	0.92	0.90	0.95	18	2831	3	0	1	2	2
SPR_00079	tRNA links to Rfam database...	0.79	0.63	1.00	12	2473	0	0	0	0	7
SPR_00086	tRNA links to Rfam database...	0.88	0.86	0.90	18	2830	2	0	2	0	3
SPR_00087	tRNA links to Rfam database...	0.87	0.85	0.89	17	2831	3	0	2	1	3
SPR_00088	tRNA links to Rfam database...	0.82	0.80	0.84	16	2831	4	0	3	1	4
SPR_00089	tRNA links to Rfam database...	0.82	0.80	0.84	16	2831	4	0	3	1	4
SPR_00090	tRNA links to Rfam database...	0.87	0.85	0.89	17	2831	3	0	2	1	3
SPR_00091	tRNA links to Rfam database...	0.87	0.85	0.89	17	2831	3	0	2	1	3
SPR_00095	tRNA links to Rfam database...	0.90	0.90	0.90	19	2829	2	0	2	0	2
SPR_00111	tRNA links to Rfam database...	0.87	0.76	1.00	16	2685	0	0	0	0	5
SPR_00112	tRNA links to Rfam database...	0.84	0.71	1.00	15	2686	0	0	0	0	6
SPR_00115	tRNA links to Rfam database...	0.87	0.76	1.00	16	2685	0	0	0	0	5
SPR_00117	tRNA links to Rfam database...	0.86	0.86	0.86	18	2829	3	0	3	0	3
SPR_00139	tRNA links to Rfam database...	0.83	0.81	0.85	17	2906	4	0	3	1	4
SPR_00153	tRNA links to Rfam database...	0.90	0.90	0.90	19	2905	2	0	2	0	2
SPR_00155	tRNA links to Rfam database...	0.86	0.86	0.86	18	2905	3	0	3	0	3
SPR_00156	tRNA links to Rfam database...	0.90	0.90	0.90	19	2905	2	0	2	0	2
SPR_00176	tRNA links to Rfam database...	0.90	0.90	0.90	18	2830	3	0	2	1	2
SPR_00177	tRNA links to Rfam database...	0.86	0.86	0.86	18	2829	3	0	3	0	3
SPR_00178	tRNA links to Rfam database...	0.90	0.90	0.90	19	2829	2	0	2	0	2
SPR_00191	tRNA links to Rfam database...	0.84	0.71	1.00	15	2835	0	0	0	0	6
SPR_00200	tRNA links to Rfam database...	0.83	0.81	0.85	17	2830	3	0	3	0	4
SPR_00224	tRNA links to Rfam database...	0.85	0.85	0.85	17	3721	3	0	3	0	3
SPR_00271	tRNA links to Rfam database...	0.90	0.90	0.90	19	2829	2	0	2	0	2
SPR_00273	tRNA links to Rfam database...	0.86	0.86	0.86	18	2829	3	0	3	0	3
SPR_00276	tRNA links to Rfam database...	0.95	0.90	1.00	19	2907	0	0	0	0	2
SPR_00277	tRNA links to Rfam database...	0.98	0.95	1.00	20	2906	0	0	0	0	1
SPR_00294	tRNA links to Rfam database...	0.86	0.86	0.86	18	2829	3	0	3	0	3
SPR_00295	tRNA links to Rfam database...	0.86	0.86	0.86	18	2754	3	0	3	0	3
SPR_00314	tRNA links to Rfam database...	0.90	0.90	0.90	19	2905	2	0	2	0	2
SPR_00315	tRNA links to Rfam database...	0.90	0.90	0.90	19	2905	2	0	2	0	2
SPR_00317	tRNA links to Rfam database...	0.97	0.95	1.00	19	2907	1	0	0	1	1
SPR_00318	tRNA links to Rfam database...	0.90	0.90	0.90	19	2905	2	0	2	0	2
SPR_00321	tRNA links to Rfam database...	0.90	0.90	0.90	19	2982	2	0	2	0	2
SPR_00333	tRNA links to Rfam database...	0.88	0.86	0.90	18	2755	2	0	2	0	3
SPR_00352	tRNA links to Rfam database...	0.86	0.86	0.86	18	2905	3	0	3	0	3
SPR_00353	tRNA links to Rfam database...	0.90	0.90	0.90	19	2829	2	0	2	0	2
SPR_00357	tRNA links to Rfam database...	0.90	0.90	0.90	19	2905	2	0	2	0	2
SPR_00358	tRNA links to Rfam database...	0.90	0.90	0.90	18	2906	3	0	2	1	2
SPR_00370	tRNA links to Rfam database...	0.95	0.90	1.00	19	2756	0	0	0	0	2
SPR_00386	tRNA links to Rfam database...	0.90	0.90	0.90	18	4166	2	0	2	0	2
SPR_00414	tRNA links to Rfam database...	0.81	0.81	0.81	17	3549	4	0	4	0	4
SPR_00415	tRNA links to Rfam database...	0.77	0.71	0.83	15	3552	7	0	3	4	6
SPR_00417	tRNA links to Rfam database...	0.70	0.64	0.78	14	3552	8	0	4	4	8
SPR_00418	tRNA links to Rfam database...	0.75	0.68	0.83	15	3552	7	0	3	4	7
SPR_00434	tRNA links to Rfam database...	0.70	0.67	0.74	14	2831	5	0	5	0	7
SPR_00435	tRNA links to Rfam database...	0.86	0.86	0.86	18	2829	3	0	3	0	3
SPR_00436	tRNA links to Rfam database...	0.70	0.67	0.74	14	2831	5	0	5	0	7
SPR_00437	tRNA links to Rfam database...	0.61	0.57	0.67	12	2757	6	0	6	0	9
SPR_00438	tRNA links to Rfam database...	0.95	0.90	1.00	19	2756	0	0	0	0	2
SPR_00452	tRNA links to Rfam database...	0.71	0.62	0.81	13	2834	3	0	3	0	8
SPR_00455	tRNA links to Rfam database...	0.90	0.90	0.90	19	2829	2	0	2	0	2
SPR_00456	tRNA links to Rfam database...	0.81	0.81	0.81	17	2829	4	0	4	0	4
SPR_00476	tRNA links to Rfam database...	0.85	0.81	0.89	17	2756	2	0	2	0	4
SPR_00479	tRNA links to Rfam database...	0.90	0.90	0.90	19	2829	2	0	2	0	2
SPR_00482	tRNA links to Rfam database...	0.98	0.95	1.00	20	2681	0	0	0	0	1
SPR_00483	tRNA links to Rfam database...	0.74	0.67	0.82	14	2833	3	0	3	0	7
SPR_00487	tRNA links to Rfam database...	0.64	0.55	0.75	12	2685	4	0	4	0	10
SPR_00493	tRNA links to Rfam database...	0.78	0.73	0.84	16	2756	3	0	3	0	6
SPR_00496	tRNA links to Rfam database...	0.88	0.86	0.90	18	2755	2	0	2	0	3
SPR_00497	tRNA links to Rfam database...	0.85	0.81	0.89	17	2756	2	0	2	0	4
SPR_00502	tRNA links to Rfam database...	0.98	0.95	1.00	20	2906	0	0	0	0	1
SPR_00504	tRNA links to Rfam database...	0.97	0.95	1.00	19	2831	0	0	0	0	1
SPR_00505	tRNA links to Rfam database...	0.97	0.95	1.00	19	2907	0	0	0	0	1
SPR_00506	tRNA links to Rfam database...	0.97	0.95	1.00	19	2907	0	0	0	0	1
SPR_00509	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00512	tRNA links to Rfam database...	0.97	0.95	1.00	19	2907	0	0	0	0	1
SPR_00513	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00518	tRNA links to Rfam database...	0.92	0.85	1.00	17	2909	0	0	0	0	3
SPR_00548	tRNA links to Rfam database...	0.83	0.81	0.85	17	3383	3	0	3	0	4
SPR_00557	tRNA links to Rfam database...	0.70	0.67	0.74	14	2831	5	0	5	0	7
SPR_00561	tRNA links to Rfam database...	0.71	0.62	0.81	13	2834	3	0	3	0	8
SPR_00590	tRNA links to Rfam database...	0.77	0.75	0.79	15	2984	4	0	4	0	5
SPR_00593	tRNA links to Rfam database...	0.81	0.79	0.83	15	2757	5	0	3	2	4
SPR_00595	tRNA links to Rfam database...	0.90	0.90	0.90	19	2754	2	0	2	0	2
SPR_00598	tRNA links to Rfam database...	0.88	0.86	0.90	18	2983	2	0	2	0	3
SPR_00610	tRNA links to Rfam database...	0.85	0.76	0.94	16	2539	1	0	1	0	5
SPR_00620	tRNA links to Rfam database...	0.76	0.67	0.88	14	2987	2	0	2	0	7
SPR_00721	tRNA links to Rfam database...	0.88	0.86	0.90	18	2906	2	0	2	0	3
SPR_00722	tRNA links to Rfam database...	0.90	0.90	0.90	18	2906	3	0	2	1	2
SPR_00758	tRNA links to Rfam database...	0.90	0.90	0.90	19	2982	2	0	2	0	2
SPR_00760	tRNA links to Rfam database...	0.85	0.81	0.89	17	3551	2	0	2	0	4
SPR_00777	tRNA links to Rfam database...	1.00	1.00	1.00	20	2608	1	0	0	1	0
SPR_00867	tRNA links to Rfam database...	0.81	0.81	0.81	17	2905	4	0	4	0	4
SPR_00868	tRNA links to Rfam database...	0.90	0.90	0.90	19	2905	2	0	2	0	2
SPR_00943	tRNA links to Rfam database...	1.00	1.00	1.00	20	2536	0	0	0	0	0
SPR_00957	tRNA links to Rfam database...	0.90	0.90	0.90	19	2982	2	0	2	0	2
SPR_01040	tRNA links to Rfam database...	0.85	0.81	0.89	17	2756	2	0	2	0	4
SPR_01088	tRNA links to Rfam database...	0.76	0.67	0.88	14	2910	2	0	2	0	7
SPR_01095	tRNA links to Rfam database...	0.71	0.62	0.81	13	2834	3	0	3	0	8
SPR_01106	tRNA links to Rfam database...	1.00	1.00	1.00	21	2535	0	0	0	0	0
SPR_01117	tRNA links to Rfam database...	0.82	0.67	1.00	14	2989	0	0	0	0	7
SPR_01157	tRNA links to Rfam database...	0.81	0.81	0.81	17	2754	4	0	4	0	4
SRP_00006	Metazoa_SRP links to Rfam database...	0.95	0.90	1.00	91	45662	4	0	0	4	10
SRP_00008	Bacteria_small_SRP links to Rfam database...	0.49	0.24	1.00	6	2920	0	0	0	0	19
SRP_00011	Plant_SRP links to Rfam database...	0.63	0.52	0.77	54	46290	18	0	16	2	50
SRP_00015	Plant_SRP links to Rfam database...	0.73	0.63	0.86	62	46288	17	0	10	7	37
SRP_00020	Bacteria_small_SRP links to Rfam database...	0.64	0.48	0.84	16	5546	3	1	2	0	17
SRP_00024	Bacteria_large_SRP links to Rfam database...	0.53	0.31	0.90	27	37645	3	0	3	0	60
SRP_00026	Bacteria_large_SRP links to Rfam database...	0.52	0.31	0.90	27	36826	4	0	3	1	61
SRP_00030	Bacteria_large_SRP links to Rfam database...	0.51	0.33	0.78	29	36819	8	4	4	0	59
SRP_00031	Bacteria_large_SRP links to Rfam database...	0.53	0.31	0.90	28	36284	4	0	3	1	61
SRP_00038	Bacteria_small_SRP links to Rfam database...	0.46	0.21	1.00	7	5043	0	0	0	0	26
SRP_00042	Bacteria_small_SRP links to Rfam database...	0.63	0.52	0.76	13	3988	4	1	3	0	12
SRP_00044	Bacteria_small_SRP links to Rfam database...	0.47	0.22	1.00	7	6098	0	0	0	0	25
SRP_00046	Bacteria_small_SRP links to Rfam database...	0.47	0.22	1.00	7	4746	0	0	0	0	25
SRP_00050	Metazoa_SRP links to Rfam database...	0.85	0.76	0.95	75	44771	7	0	4	3	24
SRP_00051	Bacteria_small_SRP links to Rfam database...	0.48	0.23	1.00	7	5453	0	0	0	0	23
SRP_00054	Bacteria_small_SRP links to Rfam database...	0.47	0.22	1.00	7	5558	0	0	0	0	25
SRP_00057	Bacteria_small_SRP links to Rfam database...	0.45	0.20	1.00	7	6321	0	0	0	0	28
SRP_00058	Bacteria_small_SRP links to Rfam database...	0.45	0.21	1.00	7	5771	0	0	0	0	27
SRP_00066	Metazoa_SRP links to Rfam database...	0.74	0.67	0.83	67	45370	17	5	9	3	33
SRP_00072	Bacteria_small_SRP links to Rfam database...	0.49	0.24	1.00	7	6321	0	0	0	0	22
SRP_00074	Bacteria_small_SRP links to Rfam database...	0.49	0.24	1.00	7	6548	0	0	0	0	22
SRP_00075	Bacteria_small_SRP links to Rfam database...	0.45	0.21	1.00	7	5558	0	0	0	0	27
SRP_00077	Bacteria_small_SRP links to Rfam database...	0.43	0.19	1.00	7	6663	0	0	0	0	30
SRP_00081	Bacteria_small_SRP links to Rfam database...	0.44	0.19	1.00	6	5559	0	0	0	0	25
SRP_00084	Bacteria_small_SRP links to Rfam database...	0.45	0.21	1.00	7	5453	0	0	0	0	27
SRP_00086	Metazoa_SRP links to Rfam database...	0.74	0.66	0.84	66	44174	13	7	6	0	34
SRP_00094	Bacteria_small_SRP links to Rfam database...	0.59	0.50	0.71	12	4078	5	1	4	0	12
SRP_00095	Bacteria_small_SRP links to Rfam database...	0.63	0.52	0.76	13	3988	4	1	3	0	12
SRP_00098	Bacteria_small_SRP links to Rfam database...	0.40	0.16	1.00	6	6435	0	0	0	0	31
SRP_00102	Metazoa_SRP links to Rfam database...	0.76	0.68	0.84	69	44469	16	1	12	3	32
SRP_00103	Metazoa_SRP links to Rfam database...	0.75	0.65	0.87	66	45375	12	1	9	2	36
SRP_00105	Bacteria_small_SRP links to Rfam database...	0.45	0.21	1.00	7	5558	0	0	0	0	27
SRP_00107	Bacteria_small_SRP links to Rfam database...	0.56	0.32	1.00	6	3649	0	0	0	0	13
SRP_00121	Bacteria_small_SRP links to Rfam database...	0.53	0.28	1.00	7	4271	0	0	0	0	18
SRP_00128	Bacteria_small_SRP links to Rfam database...	0.44	0.19	1.00	7	6779	0	0	0	0	29
SRP_00132	Bacteria_small_SRP links to Rfam database...	0.49	0.24	1.00	7	4844	0	0	0	0	22
SRP_00141	Bacteria_small_SRP links to Rfam database...	0.38	0.15	1.00	6	6322	0	0	0	0	35
SRP_00152	Plant_SRP links to Rfam database...	0.75	0.64	0.87	66	45677	14	5	5	4	37
SRP_00161	Bacteria_small_SRP links to Rfam database...	0.52	0.27	1.00	6	2844	0	0	0	0	16
SRP_00162	Bacteria_small_SRP links to Rfam database...	0.55	0.30	1.00	7	2919	0	0	0	0	16
SRP_00163	Bacteria_small_SRP links to Rfam database...	0.52	0.27	1.00	7	3479	0	0	0	0	19
SRP_00164	Bacteria_small_SRP links to Rfam database...	0.41	0.17	1.00	6	6897	0	0	0	0	29
SRP_00170	Bacteria_small_SRP links to Rfam database...	0.61	0.52	0.72	13	4077	6	2	3	1	12
SRP_00171	Metazoa_SRP links to Rfam database...	0.66	0.65	0.68	57	45367	35	6	21	8	31
SRP_00178	Plant_SRP links to Rfam database...	0.74	0.57	0.97	58	45693	3	0	2	1	44
SRP_00179	Plant_SRP links to Rfam database...	0.75	0.60	0.93	63	45988	9	0	5	4	42
SRP_00181	Plant_SRP links to Rfam database...	0.71	0.57	0.89	58	45991	9	0	7	2	44
SRP_00182	Plant_SRP links to Rfam database...	0.78	0.68	0.90	69	45979	9	0	8	1	32
SRP_00184	Plant_SRP links to Rfam database...	0.65	0.53	0.79	53	45989	17	0	14	3	47
SRP_00188	Plant_SRP links to Rfam database...	0.69	0.59	0.81	47	31067	12	1	10	1	32
SRP_00194	Bacteria_small_SRP links to Rfam database...	0.53	0.29	1.00	6	3234	0	0	0	0	15
SRP_00200	Bacteria_small_SRP links to Rfam database...	0.41	0.17	1.00	6	6897	0	0	0	0	30
SRP_00209	Bacteria_small_SRP links to Rfam database...	0.51	0.37	0.71	10	4642	5	1	3	1	17
SRP_00213	Bacteria_small_SRP links to Rfam database...	0.57	0.44	0.73	11	4171	4	1	3	0	14
SRP_00215	Bacteria_small_SRP links to Rfam database...	0.53	0.28	1.00	7	3233	0	0	0	0	18
SRP_00227	Bacteria_small_SRP links to Rfam database...	0.90	0.87	0.93	27	5122	5	1	1	3	4
SRP_00228	Metazoa_SRP links to Rfam database...	0.75	0.68	0.81	65	45371	19	1	14	4	30
SRP_00231	Bacteria_small_SRP links to Rfam database...	0.45	0.21	1.00	7	5453	0	0	0	0	27
SRP_00233	Bacteria_small_SRP links to Rfam database...	0.46	0.21	1.00	7	5144	0	0	0	0	26
SRP_00243	Bacteria_small_SRP links to Rfam database...	0.47	0.23	1.00	7	5144	0	0	0	0	24
SRP_00244	Bacteria_small_SRP links to Rfam database...	0.39	0.15	1.00	6	6897	1	0	0	1	33
SRP_00250	Bacteria_small_SRP links to Rfam database...	0.44	0.19	1.00	7	6779	0	0	0	0	29
SRP_00251	Bacteria_small_SRP links to Rfam database...	0.41	0.17	1.00	6	7015	1	0	0	1	30
SRP_00266	Bacteria_small_SRP links to Rfam database...	0.49	0.24	1.00	7	4649	0	0	0	0	22
SRP_00268	Bacteria_small_SRP links to Rfam database...	0.56	0.44	0.71	12	4169	5	1	4	0	15
SRP_00269	Bacteria_small_SRP links to Rfam database...	0.46	0.21	1.00	7	5043	0	0	0	0	26
SRP_00270	Bacteria_small_SRP links to Rfam database...	0.44	0.19	1.00	6	4650	1	0	0	1	25
SRP_00271	Bacteria_small_SRP links to Rfam database...	0.54	0.29	1.00	7	3233	0	0	0	0	17
SRP_00273	Bacteria_small_SRP links to Rfam database...	0.71	0.55	0.92	22	6762	2	1	1	0	18
SRP_00274	Bacteria_small_SRP links to Rfam database...	0.43	0.18	1.00	7	6896	0	0	0	0	31
SRP_00295	Bacteria_small_SRP links to Rfam database...	0.40	0.16	1.00	6	6897	1	0	0	1	32
SRP_00303	Bacteria_small_SRP links to Rfam database...	0.43	0.19	1.00	6	6664	1	0	0	1	26
SRP_00310	Bacteria_small_SRP links to Rfam database...	0.55	0.30	1.00	7	2919	0	0	0	0	16
SRP_00312	Bacteria_small_SRP links to Rfam database...	0.56	0.44	0.71	12	4169	6	1	4	1	15
SRP_00315	Bacteria_small_SRP links to Rfam database...	0.72	0.57	0.93	13	2912	1	0	1	0	10
SRP_00317	Metazoa_SRP links to Rfam database...	0.78	0.68	0.88	67	45074	14	0	9	5	31
SRP_00318	Bacteria_small_SRP links to Rfam database...	0.55	0.30	1.00	7	2996	0	0	0	0	16
SRP_00325	Bacteria_small_SRP links to Rfam database...	0.46	0.21	1.00	7	4364	0	0	0	0	26
SRP_00326	Bacteria_small_SRP links to Rfam database...	0.44	0.19	1.00	6	5044	1	0	0	1	25
SRP_00333	Bacteria_small_SRP links to Rfam database...	0.45	0.21	1.00	7	5144	0	0	0	0	27
SRP_00337	Bacteria_large_SRP links to Rfam database...	0.59	0.42	0.83	38	35465	9	0	8	1	53
SRP_00338	Bacteria_small_SRP links to Rfam database...	0.44	0.19	1.00	7	5453	0	0	0	0	29
SRP_00341	Bacteria_small_SRP links to Rfam database...	0.47	0.23	1.00	7	4746	0	0	0	0	24
SRP_00342	Bacteria_small_SRP links to Rfam database...	0.49	0.24	1.00	6	3999	0	0	0	0	19
SRP_00347	Metazoa_SRP links to Rfam database...	0.72	0.65	0.79	62	46587	23	1	15	7	34
SRP_00350	Bacteria_small_SRP links to Rfam database...	0.42	0.37	0.48	10	3895	11	1	10	0	17
SRP_00356	Bacteria_small_SRP links to Rfam database...	0.48	0.23	1.00	7	5043	0	0	0	0	23
SRP_00357	Bacteria_small_SRP links to Rfam database...	0.55	0.31	1.00	11	5345	0	0	0	0	25
SRP_00358	Bacteria_small_SRP links to Rfam database...	0.41	0.17	1.00	6	6322	0	0	0	0	29
SRP_00367	Bacteria_small_SRP links to Rfam database...	0.25	0.09	0.75	3	6782	2	0	1	1	32
SRP_00368	Metazoa_SRP links to Rfam database...	0.78	0.70	0.87	69	43877	14	1	9	4	29
SRP_00369	Bacteria_small_SRP links to Rfam database...	0.41	0.17	1.00	6	5772	0	0	0	0	29
SRP_00383	Bacteria_small_SRP links to Rfam database...	0.54	0.29	1.00	7	3233	0	0	0	0	17
TMR_00017	tmRNA links to Rfam database...	0.72	0.60	0.87	61	67091	13	0	9	4	41
TMR_00018	tmRNA links to Rfam database...	0.56	0.49	0.65	45	64551	29	6	18	5	47
TMR_00038	tmRNA links to Rfam database...	0.67	0.53	0.84	58	71184	13	5	6	2	52
TMR_00042	tmRNA links to Rfam database...	0.56	0.44	0.70	43	62774	19	1	17	1	55
TMR_00046	tmRNA links to Rfam database...	0.60	0.52	0.69	50	62763	23	6	16	1	46
TMR_00048	tmRNA links to Rfam database...	0.56	0.48	0.66	46	64910	29	9	15	5	49
TMR_00080	tmRNA links to Rfam database...	0.54	0.49	0.60	47	70422	35	12	19	4	49
TMR_00082	tmRNA links to Rfam database...	0.59	0.50	0.71	48	67828	25	7	13	5	48
TMR_00123	tmRNA links to Rfam database...	0.64	0.50	0.81	51	66367	17	3	9	5	50
TMR_00137	tmRNA links to Rfam database...	0.54	0.46	0.64	41	61011	28	5	18	5	48
TMR_00142	tmRNA links to Rfam database...	0.64	0.60	0.69	61	70788	34	12	15	7	41
TMR_00207	tmRNA links to Rfam database...	0.53	0.42	0.66	43	72325	26	4	18	4	60
TMR_00257	tmRNA links to Rfam database...	0.56	0.48	0.64	47	67088	29	4	22	3	51
TMR_00271	tmRNA links to Rfam database...	0.55	0.42	0.72	38	64208	20	1	14	5	53
TMR_00332	tmRNA links to Rfam database...	0.70	0.58	0.85	57	67094	16	0	10	6	42
TMR_00366	tmRNA links to Rfam database...	0.53	0.49	0.58	49	67811	43	8	28	7	51
TMR_00378	tmRNA links to Rfam database...	0.57	0.51	0.64	49	67820	37	9	18	10	48
TMR_00399	tmRNA links to Rfam database...	0.61	0.47	0.79	44	64924	18	2	10	6	50
TMR_00404	tmRNA links to Rfam database...	0.53	0.41	0.68	38	67472	21	8	10	3	54
TMR_00427	tmRNA links to Rfam database...	0.20	0.13	0.30	13	67485	30	4	26	0	84
TMR_00443	tmRNA links to Rfam database...	0.73	0.61	0.88	63	67089	13	0	9	4	41
TMR_00451	tmRNA links to Rfam database...	0.52	0.46	0.58	41	63475	36	8	22	6	48
TMR_00458	tmRNA links to Rfam database...	0.50	0.41	0.61	38	63484	29	4	20	5	55
TMR_00469	tmRNA links to Rfam database...	0.64	0.48	0.84	48	64563	10	3	6	1	52
TMR_00472	tmRNA links to Rfam database...	0.70	0.61	0.81	59	64547	15	8	6	1	38
TMR_00519	tmRNA links to Rfam database...	0.49	0.37	0.65	35	63136	23	2	17	4	60
TMR_00520	tmRNA links to Rfam database...	0.44	0.35	0.54	35	63125	36	5	25	6	64
TMR_00522	tmRNA links to Rfam database...	0.49	0.39	0.60	38	63127	29	8	17	4	59
TMR_00528	tmRNA links to Rfam database...	0.48	0.41	0.57	40	63120	36	7	23	6	57
TMR_00540	tmRNA links to Rfam database...	0.53	0.45	0.63	47	73461	28	8	20	0	57
TMR_00568	tmRNA links to Rfam database...	0.72	0.64	0.82	63	60649	18	3	11	4	36
TMR_00571	tmRNA links to Rfam database...	0.76	0.67	0.86	66	60649	15	2	9	4	33
TMR_00580	tmRNA links to Rfam database...	0.75	0.66	0.86	66	60649	15	2	9	4	34
TMR_00584	tmRNA links to Rfam database...	0.71	0.62	0.81	60	61001	17	4	10	3	37
TMR_00586	tmRNA links to Rfam database...	0.71	0.63	0.79	61	60998	20	5	11	4	36
TMR_00616	tmRNA links to Rfam database...	0.67	0.58	0.79	57	67089	16	6	9	1	42
TMR_00699	tmRNA links to Rfam database...	0.57	0.43	0.75	44	67102	19	1	14	4	58
TMR_00702	tmRNA links to Rfam database...	0.54	0.43	0.68	43	67098	25	3	17	5	57
TMR_00703	tmRNA links to Rfam database...	0.58	0.45	0.75	45	67468	19	3	12	4	54

^top

Performance of Vsfold4 - scored lower in this pairwise comparison

1. Total counts & total scores for Vsfold4

Total Base Pair Counts
Total TP	9128
Total TN	11223065
Total FP	12807
Total FP CONTRA	1387
Total FP INCONS	10672
Total FP COMP	748
Total FN	16436

Total Scores
MCC	0.391
Average MCC ± 95% Confidence Intervals	0.478 ± 0.029
Sensitivity	0.357
Positive Predictive Value	0.431
Nr of predictions	491

^top

2. Individual counts for Vsfold4 [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00004	RNaseP_bact_a links to Rfam database...	0.66	0.59	0.74	57	47818	20	1	19	0	40
ASE_00007	RNaseP_bact_a links to Rfam database...	0.36	0.33	0.40	36	59596	57	1	52	4	74
ASE_00018	RNaseP_bact_a links to Rfam database...	0.48	0.43	0.54	57	80496	48	2	46	0	77
ASE_00022	RNaseP_bact_b links to Rfam database...	0.48	0.41	0.57	51	82938	42	5	34	3	73
ASE_00028	RNaseP_bact_b links to Rfam database...	0.34	0.30	0.38	38	84565	63	6	57	0	88
ASE_00035	RNaseP_bact_a links to Rfam database...	0.26	0.24	0.29	28	70403	69	3	66	0	90
ASE_00040	RNaseP_bact_a links to Rfam database...	0.42	0.37	0.49	49	78903	51	1	50	0	84
ASE_00045	RNaseP_bact_b links to Rfam database...	0.50	0.46	0.55	37	47211	33	3	27	3	43
ASE_00064	RNaseP_bact_a links to Rfam database...	0.47	0.42	0.54	37	45382	38	0	32	6	52
ASE_00068	RNaseP_bact_a links to Rfam database...	0.35	0.29	0.41	25	37614	39	1	35	3	60
ASE_00077	RNaseP_bact_a links to Rfam database...	0.27	0.26	0.30	22	45076	56	5	47	4	64
ASE_00078	RNaseP_bact_a links to Rfam database...	0.32	0.30	0.35	25	42999	52	3	44	5	58
ASE_00080	RNaseP_bact_a links to Rfam database...	0.37	0.32	0.43	39	71540	52	2	50	0	84
ASE_00081	RNaseP_bact_a links to Rfam database...	0.39	0.35	0.45	34	49694	42	3	39	0	63
ASE_00082	RNaseP_bact_a links to Rfam database...	0.39	0.34	0.44	39	70412	57	1	48	8	77
ASE_00083	RNaseP_bact_a links to Rfam database...	0.55	0.50	0.60	55	62389	41	5	32	4	55
ASE_00084	RNaseP_bact_a links to Rfam database...	0.51	0.44	0.59	44	53554	35	3	27	5	55
ASE_00087	RNaseP_bact_a links to Rfam database...	0.42	0.35	0.52	50	88313	51	2	45	4	94
ASE_00092	RNaseP_bact_a links to Rfam database...	0.51	0.46	0.58	52	63456	38	10	28	0	61
ASE_00104	RNaseP_bact_a links to Rfam database...	0.51	0.45	0.57	54	64167	40	3	37	0	65
ASE_00107	RNaseP_bact_a links to Rfam database...	0.41	0.36	0.46	46	73053	54	2	52	0	81
ASE_00114	RNaseP_bact_b links to Rfam database...	0.46	0.40	0.53	31	45392	38	0	28	10	46
ASE_00115	RNaseP_bact_a links to Rfam database...	0.43	0.39	0.49	39	54535	48	6	35	7	62
ASE_00119	RNaseP_bact_a links to Rfam database...	0.72	0.63	0.82	68	62752	20	1	14	5	40
ASE_00123	RNaseP_bact_a links to Rfam database...	0.33	0.29	0.38	25	38437	45	0	41	4	60
ASE_00135	RNaseP_bact_a links to Rfam database...	0.38	0.35	0.42	38	63100	57	8	44	5	71
ASE_00138	RNaseP_bact_a links to Rfam database...	0.42	0.38	0.47	31	40404	37	5	30	2	50
ASE_00142	RNaseP_bact_a links to Rfam database...	0.50	0.44	0.57	54	67066	41	6	35	0	68
ASE_00146	RNaseP_bact_a links to Rfam database...	0.30	0.26	0.35	32	70784	61	2	58	1	92
ASE_00153	RNaseP_nuc links to Rfam database...	0.38	0.37	0.39	27	57561	65	9	33	23	46
ASE_00161	RNaseP_bact_b links to Rfam database...	0.44	0.41	0.46	36	53550	44	5	37	2	51
ASE_00163	RNaseP_bact_a links to Rfam database...	0.36	0.32	0.39	30	53225	50	8	38	4	63
ASE_00170	RNaseP_bact_a links to Rfam database...	0.47	0.44	0.50	41	48746	41	4	37	0	52
ASE_00174	RNaseP_bact_a links to Rfam database...	0.42	0.38	0.47	41	60988	46	2	44	0	68
ASE_00179	RNaseP_bact_a links to Rfam database...	0.57	0.51	0.63	43	44185	25	5	20	0	41
ASE_00180	RNaseP_bact_a links to Rfam database...	0.38	0.36	0.41	36	51273	52	4	47	1	64
ASE_00182	RNaseP_bact_a links to Rfam database...	0.41	0.35	0.48	47	84158	50	6	44	0	89
ASE_00184	RNaseP_bact_a links to Rfam database...	0.50	0.45	0.56	46	54533	41	1	35	5	56
ASE_00185	RNaseP_bact_a links to Rfam database...	0.39	0.32	0.47	41	73448	49	2	45	2	87
ASE_00186	RNaseP_bact_a links to Rfam database...	0.34	0.30	0.38	40	78899	66	3	61	2	92
ASE_00190	RNaseP_bact_b links to Rfam database...	0.42	0.37	0.49	33	45383	38	7	28	3	57
ASE_00212	RNaseP_bact_a links to Rfam database...	0.33	0.29	0.39	43	93850	70	5	63	2	105
ASE_00214	RNaseP_bact_a links to Rfam database...	0.63	0.57	0.69	59	56194	32	2	25	5	44
ASE_00215	RNaseP_bact_a links to Rfam database...	0.47	0.41	0.53	41	48438	38	7	30	1	58
ASE_00217	RNaseP_bact_a links to Rfam database...	0.24	0.21	0.28	19	40402	50	4	45	1	71
ASE_00221	RNaseP_bact_a links to Rfam database...	0.38	0.32	0.44	38	64533	49	3	46	0	79
ASE_00228	RNaseP_bact_a links to Rfam database...	0.35	0.33	0.37	28	46896	49	13	34	2	58
ASE_00229	RNaseP_bact_a links to Rfam database...	0.58	0.52	0.64	45	42416	27	1	24	2	42
ASE_00238	RNaseP_bact_a links to Rfam database...	0.34	0.31	0.39	35	64171	55	3	52	0	79
ASE_00241	RNaseP_bact_a links to Rfam database...	0.35	0.31	0.40	27	43889	44	8	32	4	60
ASE_00248	RNaseP_bact_a links to Rfam database...	0.41	0.36	0.48	41	62395	48	1	44	3	73
ASE_00255	RNaseP_bact_a links to Rfam database...	0.33	0.29	0.38	38	74591	62	9	53	0	92
ASE_00257	RNaseP_bact_a links to Rfam database...	0.54	0.47	0.62	46	50966	28	2	26	0	51
ASE_00267	RNaseP_bact_a links to Rfam database...	0.38	0.34	0.43	30	45081	47	3	36	8	58
ASE_00270	RNaseP_bact_a links to Rfam database...	0.39	0.36	0.43	46	72283	61	4	57	0	82
ASE_00279	RNaseP_bact_a links to Rfam database...	0.26	0.23	0.31	23	53226	53	4	48	1	78
ASE_00280	RNaseP_bact_a links to Rfam database...	0.60	0.55	0.65	54	51920	29	1	28	0	44
ASE_00281	RNaseP_bact_a links to Rfam database...	0.60	0.51	0.71	45	44488	23	0	18	5	43
ASE_00283	RNaseP_bact_a links to Rfam database...	0.41	0.36	0.48	38	61697	41	3	38	0	69
ASE_00285	RNaseP_bact_a links to Rfam database...	0.49	0.43	0.56	52	68913	41	1	40	0	70
ASE_00292	RNaseP_bact_a links to Rfam database...	0.48	0.41	0.56	56	81710	46	2	42	2	82
ASE_00297	RNaseP_bact_a links to Rfam database...	0.50	0.47	0.53	46	52889	40	3	37	0	52
ASE_00298	RNaseP_bact_a links to Rfam database...	0.38	0.33	0.44	37	67443	51	0	48	3	76
ASE_00305	RNaseP_bact_b links to Rfam database...	0.49	0.47	0.51	40	54537	42	6	32	4	45
ASE_00318	RNaseP_bact_b links to Rfam database...	0.38	0.35	0.41	41	80101	61	5	53	3	77
ASE_00321	RNaseP_bact_b links to Rfam database...	0.32	0.30	0.34	26	54539	50	5	45	0	62
ASE_00328	RNaseP_bact_b links to Rfam database...	0.43	0.39	0.48	44	72679	54	4	44	6	68
ASE_00332	RNaseP_bact_a links to Rfam database...	0.43	0.39	0.48	54	81698	59	2	56	1	84
ASE_00335	RNaseP_bact_b links to Rfam database...	0.35	0.32	0.39	37	75372	61	4	53	4	79
ASE_00340	RNaseP_bact_a links to Rfam database...	0.43	0.38	0.48	32	45990	34	9	25	0	53
ASE_00353	RNaseP_bact_a links to Rfam database...	0.57	0.54	0.61	58	57875	37	6	31	0	49
ASE_00361	RNaseP_bact_a links to Rfam database...	0.37	0.32	0.43	41	75371	54	2	52	0	86
ASE_00362	RNaseP_bact_a links to Rfam database...	0.54	0.52	0.57	47	48123	35	5	30	0	44
ASE_00363	RNaseP_bact_a links to Rfam database...	0.50	0.46	0.54	43	51281	42	6	30	6	51
ASE_00364	RNaseP_bact_a links to Rfam database...	0.37	0.34	0.40	36	54195	54	3	51	0	69
ASE_00366	RNaseP_bact_a links to Rfam database...	0.34	0.33	0.35	32	58562	59	8	51	0	66
ASE_00367	RNaseP_bact_a links to Rfam database...	0.30	0.27	0.33	23	43001	51	5	42	4	63
ASE_00372	RNaseP_bact_a links to Rfam database...	0.44	0.40	0.48	40	51919	49	1	43	5	60
ASE_00376	RNaseP_bact_a links to Rfam database...	0.59	0.53	0.66	56	56868	33	4	25	4	49
ASE_00382	RNaseP_bact_a links to Rfam database...	0.63	0.56	0.71	47	41839	25	0	19	6	37
ASE_00384	RNaseP_bact_a links to Rfam database...	0.53	0.47	0.61	43	48445	36	2	26	8	49
ASE_00386	RNaseP_bact_a links to Rfam database...	0.43	0.39	0.47	37	50325	46	7	34	5	59
ASE_00387	RNaseP_bact_a links to Rfam database...	0.40	0.37	0.44	38	55858	49	8	41	0	66
ASE_00388	RNaseP_bact_a links to Rfam database...	0.49	0.44	0.55	39	45682	39	1	31	7	50
ASE_00390	RNaseP_bact_a links to Rfam database...	0.43	0.38	0.48	32	42129	39	3	31	5	53
ASE_00393	RNaseP_bact_a links to Rfam database...	0.34	0.30	0.39	28	47824	49	1	42	6	65
ASE_00394	RNaseP_bact_a links to Rfam database...	0.37	0.32	0.42	30	46899	45	2	40	3	63
ASE_00395	RNaseP_bact_a links to Rfam database...	0.43	0.39	0.48	33	41547	42	3	33	6	51
ASE_00396	RNaseP_bact_a links to Rfam database...	0.45	0.42	0.49	35	41544	40	7	30	3	48
ASE_00397	RNaseP_bact_a links to Rfam database...	0.34	0.31	0.38	33	54528	55	4	50	1	72
ASE_00398	RNaseP_bact_a links to Rfam database...	0.56	0.50	0.62	52	55861	35	5	27	3	52
ASE_00400	RNaseP_bact_a links to Rfam database...	0.51	0.47	0.56	50	57881	43	4	35	4	56
ASE_00402	RNaseP_bact_a links to Rfam database...	0.39	0.34	0.44	29	42420	39	5	32	2	56
ASE_00404	RNaseP_bact_a links to Rfam database...	0.28	0.26	0.31	22	43000	53	7	42	4	63
ASE_00406	RNaseP_bact_a links to Rfam database...	0.69	0.63	0.77	59	48751	24	0	18	6	35
ASE_00411	RNaseP_bact_a links to Rfam database...	0.37	0.34	0.40	30	49380	50	5	40	5	59
ASE_00412	RNaseP_bact_a links to Rfam database...	0.43	0.38	0.48	40	58228	43	5	38	0	65
ASE_00416	RNaseP_bact_a links to Rfam database...	0.40	0.35	0.45	45	77321	55	2	53	0	82
ASE_00419	RNaseP_bact_a links to Rfam database...	0.65	0.60	0.70	62	54858	27	3	23	1	41
ASE_00422	RNaseP_bact_a links to Rfam database...	0.71	0.64	0.79	60	46895	21	1	15	5	34
ASE_00423	RNaseP_bact_a links to Rfam database...	0.61	0.56	0.66	61	56860	32	6	26	0	48
ASE_00427	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	40700	67	10	45	12	46
ASE_00428	RNaseP_bact_a links to Rfam database...	0.26	0.23	0.29	29	76537	70	2	68	0	96
ASE_00430	RNaseP_bact_a links to Rfam database...	0.75	0.67	0.83	65	46893	18	1	12	5	32
ASE_00437	RNaseP_bact_a links to Rfam database...	0.40	0.34	0.46	46	79302	53	2	51	0	89
ASE_00448	RNaseP_bact_a links to Rfam database...	0.28	0.26	0.30	29	64164	68	6	62	0	83
ASE_00451	RNaseP_bact_a links to Rfam database...	0.38	0.34	0.43	42	70778	56	3	53	0	83
CRW_00548	5S_rRNA links to Rfam database...	0.44	0.42	0.46	16	7346	19	3	16	0	22
CRW_00552	5S_rRNA links to Rfam database...	0.12	0.10	0.14	4	7112	24	2	22	0	35
CRW_00555	5S_rRNA links to Rfam database...	0.15	0.13	0.19	5	7600	21	1	20	0	35
CRW_00567	5S_rRNA links to Rfam database...	0.33	0.33	0.35	13	7466	25	5	19	1	27
CRW_00570	5S_rRNA links to Rfam database...	0.83	0.81	0.86	30	6868	5	0	5	0	7
CRW_00573	5S_rRNA links to Rfam database...	0.36	0.33	0.41	13	7108	19	1	18	0	27
CRW_01484	5S_rRNA links to Rfam database...	0.32	0.28	0.38	11	7474	18	1	17	0	28
CRW_01485	5S_rRNA links to Rfam database...	0.47	0.41	0.53	16	7473	14	3	11	0	23
CRW_01487	5S_rRNA links to Rfam database...	0.34	0.32	0.37	13	7468	22	2	20	0	28
CRW_01489	5S_rRNA links to Rfam database...	0.33	0.31	0.35	12	7469	22	3	19	0	27
CRW_01491	5S_rRNA links to Rfam database...	0.26	0.21	0.32	9	8357	19	3	16	0	34
CRW_01492	5S_rRNA links to Rfam database...	0.74	0.69	0.81	29	7590	9	0	7	2	13
CRW_01494	5S_rRNA links to Rfam database...	0.71	0.63	0.81	25	7109	7	0	6	1	15
CRW_01497	5S_rRNA links to Rfam database...	0.59	0.48	0.73	19	7114	9	0	7	2	21
CRW_01498	5S_rRNA links to Rfam database...	0.49	0.44	0.54	19	8093	16	0	16	0	24
CRW_01499	5S_rRNA links to Rfam database...	0.14	0.12	0.16	5	7970	26	3	23	0	36
CRW_01500	5S_rRNA links to Rfam database...	0.32	0.29	0.35	11	7719	20	2	18	0	27
CRW_01501	5S_rRNA links to Rfam database...	0.60	0.56	0.66	25	8477	13	1	12	0	20
CRW_01508	5S_rRNA links to Rfam database...	0.15	0.14	0.18	6	7967	28	3	25	0	36
CRW_01532	5S_rRNA links to Rfam database...	0.00	0.00	0.00	0	7109	31	3	28	0	37
CRW_01533	5S_rRNA links to Rfam database...	0.57	0.51	0.63	19	7110	12	0	11	1	18
CRW_01534	5S_rRNA links to Rfam database...	0.54	0.49	0.60	18	7110	12	2	10	0	19
CRW_01535	5S_rRNA links to Rfam database...	0.26	0.24	0.29	9	7109	23	1	21	1	28
CRW_01536	5S_rRNA links to Rfam database...	0.50	0.46	0.55	17	6990	14	1	13	0	20
CRW_01537	5S_rRNA links to Rfam database...	0.00	0.00	0.00	0	7111	29	5	24	0	37
CRW_01539	5S_rRNA links to Rfam database...	0.00	0.00	0.00	0	7113	30	1	26	3	37
CRW_01540	5S_rRNA links to Rfam database...	0.24	0.24	0.25	9	7104	27	4	23	0	28
CRW_01541	5S_rRNA links to Rfam database...	0.49	0.43	0.55	16	7111	14	1	12	1	21
CRW_01542	5S_rRNA links to Rfam database...	0.24	0.24	0.25	9	7104	27	2	25	0	28
CRW_01544	5S_rRNA links to Rfam database...	0.09	0.08	0.12	3	7114	24	4	19	1	34
CRW_01548	5S_rRNA links to Rfam database...	0.12	0.11	0.14	4	6992	25	1	24	0	33
CRW_01555	5S_rRNA links to Rfam database...	0.00	0.00	0.00	0	9020	25	3	22	0	37
CRW_01556	5S_rRNA links to Rfam database...	0.73	0.70	0.76	26	7106	12	0	8	4	11
CRW_01557	5S_rRNA links to Rfam database...	0.23	0.22	0.26	8	7109	23	3	20	0	29
CRW_01559	5S_rRNA links to Rfam database...	0.35	0.32	0.38	12	7228	22	2	18	2	25
CRW_01562	5S_rRNA links to Rfam database...	0.16	0.14	0.20	5	7115	20	3	17	0	32
CRW_01563	5S_rRNA links to Rfam database...	0.85	0.73	1.00	27	6876	1	0	0	1	10
CRW_01566	5S_rRNA links to Rfam database...	0.49	0.46	0.53	17	7108	16	2	13	1	20
CRW_01568	5S_rRNA links to Rfam database...	0.56	0.49	0.64	18	7112	10	0	10	0	19
CRW_01569	5S_rRNA links to Rfam database...	0.27	0.24	0.30	9	7110	21	2	19	0	28
CRW_01570	5S_rRNA links to Rfam database...	0.38	0.35	0.42	13	7109	18	3	15	0	24
CRW_01572	5S_rRNA links to Rfam database...	0.00	0.00	0.00	0	6992	30	5	24	1	37
CRW_01573	5S_rRNA links to Rfam database...	0.25	0.24	0.26	9	7226	25	3	22	0	28
CRW_01578	5S_rRNA links to Rfam database...	0.49	0.43	0.55	16	7111	13	0	13	0	21
CRW_01580	5S_rRNA links to Rfam database...	0.13	0.11	0.15	4	7114	22	2	20	0	33
CRW_01581	5S_rRNA links to Rfam database...	0.21	0.19	0.25	7	7112	21	0	21	0	30
CRW_01583	5S_rRNA links to Rfam database...	0.42	0.35	0.50	13	7114	16	0	13	3	24
CRW_01584	5S_rRNA links to Rfam database...	0.00	0.00	0.00	0	7115	26	0	25	1	37
CRW_01590	5S_rRNA links to Rfam database...	0.00	0.00	0.00	0	7106	34	4	30	0	37
CRW_01593	5S_rRNA links to Rfam database...	0.26	0.24	0.28	9	7108	23	4	19	0	28
CRW_01595	5S_rRNA links to Rfam database...	0.00	0.00	0.00	0	8482	33	2	31	0	37
CRW_01599	5S_rRNA links to Rfam database...	0.48	0.46	0.52	17	7107	16	1	15	0	20
CRW_01603	5S_rRNA links to Rfam database...	0.00	0.00	0.00	0	7113	27	5	22	0	37
CRW_01605	5S_rRNA links to Rfam database...	0.13	0.14	0.14	5	7105	30	5	25	0	32
CRW_01606	5S_rRNA links to Rfam database...	0.20	0.19	0.23	7	7109	24	0	24	0	30
CRW_01608	5S_rRNA links to Rfam database...	0.48	0.46	0.52	17	8352	17	2	14	1	20
CRW_01616	5S_rRNA links to Rfam database...	0.00	0.00	0.00	0	7114	26	3	23	0	37
CRW_01617	5S_rRNA links to Rfam database...	0.37	0.35	0.41	13	7108	19	2	17	0	24
CRW_01620	5S_rRNA links to Rfam database...	0.93	0.86	1.00	32	6989	1	0	0	1	5
CRW_01621	5S_rRNA links to Rfam database...	0.15	0.14	0.19	5	7113	22	2	20	0	32
CRW_01623	5S_rRNA links to Rfam database...	0.20	0.19	0.21	7	7107	26	2	24	0	30
CRW_01625	5S_rRNA links to Rfam database...	0.32	0.32	0.32	12	7103	25	3	22	0	25
PDB_00012	mir-TAR links to Rfam database...	1.00	1.00	1.00	7	399	3	0	0	3	0
PDB_00070	tRNA links to Rfam database...	0.42	0.38	0.47	9	2831	11	0	10	1	15
PDB_00213	Gammaretro_CES links to Rfam database...	0.46	0.41	0.52	17	5017	16	0	16	0	24
PDB_00229	tRNA links to Rfam database...	0.89	0.83	0.95	19	2755	1	0	1	0	4
PDB_00327	tRNA links to Rfam database...	0.69	0.70	0.70	16	3058	7	0	7	0	7
PDB_00362	tRNA links to Rfam database...	0.95	0.91	1.00	20	2830	0	0	0	0	2
PDB_00402	tRNA links to Rfam database...	0.93	0.87	1.00	20	2755	0	0	0	0	3
PDB_00431	tRNA links to Rfam database...	0.70	0.65	0.76	13	2194	4	0	4	0	7
PDB_00474	tRNA links to Rfam database...	0.96	0.91	1.00	21	2680	0	0	0	0	2
PDB_00553	mir-TAR links to Rfam database...	1.00	1.00	1.00	11	454	0	0	0	0	0
PDB_00571	tRNA links to Rfam database...	0.87	0.80	0.95	20	3300	1	1	0	0	5
PDB_00667	tRNA links to Rfam database...	0.71	0.68	0.75	15	2830	6	4	1	1	7
PDB_00741	Entero_5_CRE links to Rfam database...	0.84	0.71	1.00	12	691	0	0	0	0	5
PDB_00810	s2m links to Rfam database...	0.45	0.35	0.60	6	1071	4	2	2	0	11
PDB_00828	Purine links to Rfam database...	0.86	0.74	1.00	20	2465	0	0	0	0	7
PDB_00829	Purine links to Rfam database...	0.86	0.75	1.00	18	2260	0	0	0	0	6
PDB_00876	HIV_FE links to Rfam database...	0.92	0.85	1.00	17	973	0	0	0	0	3
PDB_01002	tRNA links to Rfam database...	0.95	0.90	1.00	19	2756	2	0	0	2	2
PDB_01020	Purine links to Rfam database...	0.86	0.74	1.00	17	2261	1	0	0	1	6
PDB_01050	UnaL2 links to Rfam database...	0.92	0.85	1.00	11	619	2	0	0	2	2
PDB_01053	tRNA links to Rfam database...	0.97	0.94	1.00	15	1363	0	0	0	0	1
PDB_01073	SAM links to Rfam database...	0.55	0.47	0.64	16	4346	10	0	9	1	18
PDB_01114	TPP links to Rfam database...	0.51	0.37	0.71	10	2836	4	0	4	0	17
PDB_01152	HIV_FS2 links to Rfam database...	0.88	0.79	1.00	11	550	0	0	0	0	3
PDB_01236	ykoK links to Rfam database...	0.50	0.43	0.59	23	11589	17	0	16	1	31
RFA_00389	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	2	0	0	2	1
RFA_00390	Hammerhead_3 links to Rfam database...	0.93	0.87	1.00	13	1418	2	0	0	2	2
RFA_00391	Hammerhead_3 links to Rfam database...	0.69	0.67	0.71	10	1417	6	3	1	2	5
RFA_00396	Hammerhead_3 links to Rfam database...	0.89	0.80	1.00	12	1419	1	0	0	1	3
RFA_00402	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	0	0	0	0	1
RFA_00409	Hammerhead_3 links to Rfam database...	0.89	0.80	1.00	12	1419	1	0	0	1	3
RFA_00416	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1471	3	0	0	3	1
RFA_00433	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	2	0	0	2	1
RFA_00434	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	2	0	0	2	1
RFA_00436	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	2	0	0	2	1
RFA_00440	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1471	2	0	0	2	1
RFA_00442	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	2	0	0	2	1
RFA_00444	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1525	1	0	0	1	0
RFA_00583	Y_RNA links to Rfam database...	0.51	0.53	0.50	8	4934	17	4	4	9	7
RFA_00584	Y_RNA links to Rfam database...	0.52	0.47	0.58	7	2914	16	0	5	11	8
RFA_00585	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4836	10	0	0	10	0
RFA_00586	Y_RNA links to Rfam database...	0.00	0.00	0.00	0	3908	16	4	4	8	15
RFA_00587	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4836	11	0	0	11	0
RFA_00588	Y_RNA links to Rfam database...	0.41	0.47	0.37	7	4541	19	7	5	7	8
RFA_00589	Y_RNA links to Rfam database...	0.31	0.27	0.36	4	4360	19	0	7	12	11
RFA_00594	Y_RNA links to Rfam database...	0.89	0.80	1.00	12	2763	5	0	0	5	3
RFA_00596	Y_RNA links to Rfam database...	0.00	0.00	0.00	0	5979	25	5	11	9	15
RFA_00601	Telomerase-vert links to Rfam database...	0.10	0.11	0.11	12	99122	105	21	80	4	102
RFA_00658	Hammerhead_1 links to Rfam database...	0.40	0.29	0.57	4	1121	5	0	3	2	10
RFA_00664	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	980	11	0	10	1	14
RFA_00667	Hammerhead_1 links to Rfam database...	0.22	0.21	0.25	3	978	10	1	8	1	11
RFA_00668	Hammerhead_1 links to Rfam database...	0.40	0.36	0.45	5	979	6	0	6	0	9
RFA_00672	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	897	6	0	6	0	13
RFA_00673	Hammerhead_1 links to Rfam database...	0.40	0.29	0.57	4	1121	4	0	3	1	10
RFA_00674	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	1118	10	0	10	0	14
RFA_00675	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	981	9	1	8	0	14
RFA_00677	Hammerhead_1 links to Rfam database...	0.64	0.57	0.73	8	979	5	0	3	2	6
RFA_00678	Hammerhead_1 links to Rfam database...	0.32	0.21	0.50	3	940	3	0	3	0	11
RFA_00680	Hammerhead_1 links to Rfam database...	0.69	0.64	0.75	9	1116	6	0	3	3	5
RFA_00704	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	983	8	0	7	1	14
RFA_00707	Hammerhead_1 links to Rfam database...	0.31	0.29	0.36	4	1024	7	0	7	0	10
RFA_00715	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	937	9	0	9	0	14
RFA_00717	Hammerhead_1 links to Rfam database...	0.39	0.36	0.45	5	892	6	0	6	0	9
RFA_00730	s2m links to Rfam database...	0.64	0.42	1.00	5	898	1	0	0	1	7
RFA_00731	s2m links to Rfam database...	0.64	0.42	1.00	5	898	1	0	0	1	7
RFA_00733	s2m links to Rfam database...	0.64	0.42	1.00	5	898	1	0	0	1	7
RFA_00734	s2m links to Rfam database...	0.34	0.33	0.36	4	892	7	2	5	0	8
RFA_00736	s2m links to Rfam database...	0.64	0.42	1.00	5	898	1	0	0	1	7
RFA_00737	s2m links to Rfam database...	0.64	0.42	1.00	5	898	1	0	0	1	7
RFA_00745	s2m links to Rfam database...	-0.01	0.00	0.00	0	941	5	1	4	0	12
RFA_00749	s2m links to Rfam database...	0.64	0.42	1.00	5	898	1	0	0	1	7
RFA_00758	s2m links to Rfam database...	-0.01	0.00	0.00	0	898	5	0	5	0	12
RFA_00762	s2m links to Rfam database...	0.39	0.42	0.38	5	890	8	2	6	0	7
RFA_00763	s2m links to Rfam database...	0.64	0.42	1.00	5	898	0	0	0	0	7
RFA_00764	s2m links to Rfam database...	0.64	0.42	1.00	5	898	1	0	0	1	7
RFA_00765	s2m links to Rfam database...	0.64	0.42	1.00	5	898	1	0	0	1	7
RFA_00786	Gammaretro_CES links to Rfam database...	0.39	0.34	0.44	11	5025	14	1	13	0	21
RFA_00791	Gammaretro_CES links to Rfam database...	0.41	0.34	0.50	11	5129	11	1	10	0	21
RFA_00792	Gammaretro_CES links to Rfam database...	0.57	0.53	0.61	17	5022	11	0	11	0	15
RFA_00801	Gammaretro_CES links to Rfam database...	0.53	0.50	0.57	16	5022	12	2	10	0	16
SPR_00007	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00009	tRNA links to Rfam database...	0.97	0.95	1.00	19	2831	0	0	0	0	1
SPR_00010	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00012	tRNA links to Rfam database...	0.97	0.95	1.00	19	2831	0	0	0	0	1
SPR_00013	tRNA links to Rfam database...	0.97	0.95	1.00	19	2831	0	0	0	0	1
SPR_00016	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00017	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00025	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	1	0	0	1	0
SPR_00026	tRNA links to Rfam database...	0.73	0.76	0.70	16	2903	7	0	7	0	5
SPR_00027	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00036	tRNA links to Rfam database...	1.00	1.00	1.00	20	2755	0	0	0	0	0
SPR_00045	tRNA links to Rfam database...	0.93	0.91	0.95	20	2829	1	0	1	0	2
SPR_00064	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00065	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00066	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00068	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00070	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00074	tRNA links to Rfam database...	0.82	0.80	0.84	16	2831	4	3	0	1	4
SPR_00079	tRNA links to Rfam database...	0.65	0.58	0.73	11	2470	5	0	4	1	8
SPR_00086	tRNA links to Rfam database...	0.75	0.71	0.79	15	2831	4	2	2	0	6
SPR_00087	tRNA links to Rfam database...	0.95	0.90	1.00	18	2832	0	0	0	0	2
SPR_00088	tRNA links to Rfam database...	0.95	0.90	1.00	18	2832	0	0	0	0	2
SPR_00089	tRNA links to Rfam database...	0.95	0.90	1.00	18	2832	0	0	0	0	2
SPR_00090	tRNA links to Rfam database...	0.95	0.90	1.00	18	2832	0	0	0	0	2
SPR_00091	tRNA links to Rfam database...	0.95	0.90	1.00	18	2832	0	0	0	0	2
SPR_00095	tRNA links to Rfam database...	0.75	0.71	0.79	15	2831	4	2	2	0	6
SPR_00111	tRNA links to Rfam database...	0.98	0.95	1.00	20	2681	0	0	0	0	1
SPR_00112	tRNA links to Rfam database...	0.78	0.76	0.80	16	2681	5	3	1	1	5
SPR_00115	tRNA links to Rfam database...	0.98	0.95	1.00	20	2681	0	0	0	0	1
SPR_00117	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	1	0	0	1	1
SPR_00139	tRNA links to Rfam database...	0.98	0.95	1.00	20	2906	1	0	0	1	1
SPR_00153	tRNA links to Rfam database...	0.98	0.95	1.00	20	2906	2	0	0	2	1
SPR_00155	tRNA links to Rfam database...	0.98	0.95	1.00	20	2906	0	0	0	0	1
SPR_00156	tRNA links to Rfam database...	0.98	0.95	1.00	20	2906	2	0	0	2	1
SPR_00176	tRNA links to Rfam database...	0.53	0.55	0.52	11	2829	10	5	5	0	9
SPR_00177	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00178	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00191	tRNA links to Rfam database...	0.51	0.52	0.50	11	2828	12	3	8	1	10
SPR_00200	tRNA links to Rfam database...	0.53	0.52	0.55	11	2830	10	3	6	1	10
SPR_00224	tRNA links to Rfam database...	0.53	0.55	0.52	11	3720	14	4	6	4	9
SPR_00271	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00273	tRNA links to Rfam database...	0.76	0.76	0.76	16	2829	5	0	5	0	5
SPR_00276	tRNA links to Rfam database...	0.98	0.95	1.00	20	2906	0	0	0	0	1
SPR_00277	tRNA links to Rfam database...	0.98	0.95	1.00	20	2906	0	0	0	0	1
SPR_00294	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00295	tRNA links to Rfam database...	0.95	0.90	1.00	19	2756	1	0	0	1	2
SPR_00314	tRNA links to Rfam database...	0.75	0.71	0.79	15	2907	4	2	2	0	6
SPR_00315	tRNA links to Rfam database...	0.76	0.81	0.71	17	2902	8	0	7	1	4
SPR_00317	tRNA links to Rfam database...	0.75	0.75	0.75	15	2906	5	1	4	0	5
SPR_00318	tRNA links to Rfam database...	0.98	0.95	1.00	20	2906	1	0	0	1	1
SPR_00321	tRNA links to Rfam database...	0.98	0.95	1.00	20	2983	0	0	0	0	1
SPR_00333	tRNA links to Rfam database...	0.63	0.62	0.65	13	2755	7	3	4	0	8
SPR_00352	tRNA links to Rfam database...	0.74	0.76	0.73	16	2904	6	3	3	0	5
SPR_00353	tRNA links to Rfam database...	0.75	0.71	0.79	15	2831	4	2	2	0	6
SPR_00357	tRNA links to Rfam database...	0.98	0.95	1.00	20	2906	0	0	0	0	1
SPR_00358	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00370	tRNA links to Rfam database...	0.19	0.19	0.21	4	2756	15	2	13	0	17
SPR_00386	tRNA links to Rfam database...	0.79	0.75	0.83	15	4168	7	1	2	4	5
SPR_00414	tRNA links to Rfam database...	0.87	0.76	1.00	16	3554	3	0	0	3	5
SPR_00415	tRNA links to Rfam database...	0.60	0.52	0.69	11	3554	8	3	2	3	10
SPR_00417	tRNA links to Rfam database...	0.65	0.59	0.72	13	3552	8	0	5	3	9
SPR_00418	tRNA links to Rfam database...	0.66	0.68	0.65	15	3547	8	3	5	0	7
SPR_00434	tRNA links to Rfam database...	0.71	0.71	0.71	15	2829	6	3	3	0	6
SPR_00435	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00436	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	1	0	0	1	1
SPR_00437	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	1	0	0	1	0
SPR_00438	tRNA links to Rfam database...	0.98	0.95	1.00	20	2755	0	0	0	0	1
SPR_00452	tRNA links to Rfam database...	0.73	0.76	0.70	16	2827	7	3	4	0	5
SPR_00455	tRNA links to Rfam database...	0.70	0.71	0.68	15	2828	7	0	7	0	6
SPR_00456	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	1	0	0	1	0
SPR_00476	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	0	0	0	0	0
SPR_00479	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00482	tRNA links to Rfam database...	0.98	0.95	1.00	20	2681	0	0	0	0	1
SPR_00483	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00487	tRNA links to Rfam database...	0.95	0.91	1.00	20	2681	0	0	0	0	2
SPR_00493	tRNA links to Rfam database...	0.71	0.68	0.75	15	2755	5	2	3	0	7
SPR_00496	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	0	0	0	0	0
SPR_00497	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	0	0	0	0	0
SPR_00502	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00504	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	0	0	0	0	0
SPR_00505	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00506	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00509	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00512	tRNA links to Rfam database...	0.97	0.95	1.00	19	2907	0	0	0	0	1
SPR_00513	tRNA links to Rfam database...	0.97	0.95	1.00	19	2907	0	0	0	0	1
SPR_00518	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00548	tRNA links to Rfam database...	0.79	0.81	0.77	17	3381	5	1	4	0	4
SPR_00557	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00561	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00590	tRNA links to Rfam database...	0.83	0.85	0.81	17	2982	5	1	3	1	3
SPR_00593	tRNA links to Rfam database...	0.43	0.37	0.50	7	2761	7	1	6	0	12
SPR_00595	tRNA links to Rfam database...	0.75	0.71	0.79	15	2756	4	2	2	0	6
SPR_00598	tRNA links to Rfam database...	0.83	0.81	0.85	17	2983	4	1	2	1	4
SPR_00610	tRNA links to Rfam database...	0.45	0.43	0.47	9	2537	10	4	6	0	12
SPR_00620	tRNA links to Rfam database...	0.98	0.95	1.00	20	2983	3	0	0	3	1
SPR_00721	tRNA links to Rfam database...	0.68	0.67	0.70	14	2906	6	2	4	0	7
SPR_00722	tRNA links to Rfam database...	0.76	0.80	0.73	16	2904	6	4	2	0	4
SPR_00758	tRNA links to Rfam database...	0.74	0.76	0.73	16	2981	9	0	6	3	5
SPR_00760	tRNA links to Rfam database...	0.88	0.90	0.86	19	3548	5	0	3	2	2
SPR_00777	tRNA links to Rfam database...	0.56	0.55	0.58	11	2609	9	2	6	1	9
SPR_00867	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00868	tRNA links to Rfam database...	0.98	0.95	1.00	20	2906	0	0	0	0	1
SPR_00943	tRNA links to Rfam database...	0.85	0.85	0.85	17	2536	3	0	3	0	3
SPR_00957	tRNA links to Rfam database...	1.00	1.00	1.00	21	2982	0	0	0	0	0
SPR_01040	tRNA links to Rfam database...	0.98	0.95	1.00	20	2755	0	0	0	0	1
SPR_01088	tRNA links to Rfam database...	0.98	0.95	1.00	20	2906	0	0	0	0	1
SPR_01095	tRNA links to Rfam database...	0.76	0.76	0.76	16	2829	5	0	5	0	5
SPR_01106	tRNA links to Rfam database...	0.98	0.95	1.00	20	2536	1	0	0	1	1
SPR_01117	tRNA links to Rfam database...	1.00	1.00	1.00	21	2982	1	0	0	1	0
SPR_01157	tRNA links to Rfam database...	0.98	0.95	1.00	20	2755	0	0	0	0	1
SRP_00006	Metazoa_SRP links to Rfam database...	0.22	0.20	0.25	20	45674	61	2	57	2	81
SRP_00008	Bacteria_small_SRP links to Rfam database...	0.79	0.76	0.83	19	2903	4	1	3	0	6
SRP_00011	Plant_SRP links to Rfam database...	0.15	0.13	0.17	14	46277	69	9	60	0	90
SRP_00015	Plant_SRP links to Rfam database...	0.19	0.17	0.22	17	46281	62	6	56	0	82
SRP_00020	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	5537	28	3	25	0	33
SRP_00024	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	37601	74	12	62	0	87
SRP_00026	Bacteria_large_SRP links to Rfam database...	0.06	0.06	0.07	5	36785	66	9	57	0	83
SRP_00030	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	36786	71	5	65	1	88
SRP_00031	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	36250	65	8	57	0	89
SRP_00038	Bacteria_small_SRP links to Rfam database...	0.28	0.27	0.29	9	5019	22	2	20	0	24
SRP_00042	Bacteria_small_SRP links to Rfam database...	0.37	0.32	0.44	8	3987	11	1	9	1	17
SRP_00044	Bacteria_small_SRP links to Rfam database...	0.15	0.16	0.16	5	6074	26	7	19	0	27
SRP_00046	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	4730	23	0	23	0	32
SRP_00050	Metazoa_SRP links to Rfam database...	0.12	0.10	0.14	10	44776	66	4	60	2	89
SRP_00051	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	5435	25	6	19	0	30
SRP_00054	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	5542	23	2	21	0	32
SRP_00057	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6304	24	4	20	0	35
SRP_00058	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	5748	30	3	27	0	34
SRP_00066	Metazoa_SRP links to Rfam database...	0.09	0.08	0.10	8	45373	70	6	64	0	92
SRP_00072	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6303	25	1	24	0	29
SRP_00074	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6525	31	5	25	1	29
SRP_00075	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	5539	26	2	24	0	34
SRP_00077	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	6637	33	3	30	0	37
SRP_00081	Bacteria_small_SRP links to Rfam database...	0.29	0.26	0.33	8	5541	16	3	13	0	23
SRP_00084	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	5437	23	1	22	0	34
SRP_00086	Metazoa_SRP links to Rfam database...	0.20	0.18	0.23	18	44176	61	4	55	2	82
SRP_00094	Bacteria_small_SRP links to Rfam database...	0.27	0.29	0.26	7	4068	20	4	16	0	17
SRP_00095	Bacteria_small_SRP links to Rfam database...	0.26	0.28	0.26	7	3978	20	2	18	0	18
SRP_00098	Bacteria_small_SRP links to Rfam database...	0.24	0.22	0.29	8	6413	21	2	18	1	29
SRP_00102	Metazoa_SRP links to Rfam database...	0.11	0.10	0.13	10	44471	70	2	68	0	91
SRP_00103	Metazoa_SRP links to Rfam database...	0.18	0.17	0.19	17	45362	72	2	70	0	85
SRP_00105	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	5533	32	2	30	0	34
SRP_00107	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	3634	23	4	17	2	19
SRP_00121	Bacteria_small_SRP links to Rfam database...	0.41	0.36	0.47	9	4259	10	1	9	0	16
SRP_00128	Bacteria_small_SRP links to Rfam database...	0.17	0.17	0.18	6	6753	27	1	26	0	30
SRP_00132	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	4828	24	2	21	1	29
SRP_00141	Bacteria_small_SRP links to Rfam database...	0.55	0.49	0.63	20	6296	12	2	10	0	21
SRP_00152	Plant_SRP links to Rfam database...	0.14	0.13	0.17	13	45676	64	11	53	0	90
SRP_00161	Bacteria_small_SRP links to Rfam database...	0.40	0.41	0.41	9	2828	13	3	10	0	13
SRP_00162	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	2904	22	3	19	0	23
SRP_00163	Bacteria_small_SRP links to Rfam database...	0.29	0.27	0.32	7	3464	15	3	12	0	19
SRP_00164	Bacteria_small_SRP links to Rfam database...	0.15	0.14	0.16	5	6872	26	3	23	0	30
SRP_00170	Bacteria_small_SRP links to Rfam database...	0.37	0.36	0.39	9	4072	15	0	14	1	16
SRP_00171	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	45373	78	11	67	0	88
SRP_00178	Plant_SRP links to Rfam database...	0.08	0.07	0.09	7	45673	73	8	65	0	95
SRP_00179	Plant_SRP links to Rfam database...	0.12	0.10	0.14	11	45977	68	9	59	0	94
SRP_00181	Plant_SRP links to Rfam database...	0.18	0.17	0.20	17	45972	67	9	58	0	85
SRP_00182	Plant_SRP links to Rfam database...	0.34	0.32	0.36	32	45968	56	10	46	0	69
SRP_00184	Plant_SRP links to Rfam database...	0.13	0.11	0.15	11	45985	60	7	53	0	89
SRP_00188	Plant_SRP links to Rfam database...	0.13	0.13	0.14	10	31055	60	6	54	0	69
SRP_00194	Bacteria_small_SRP links to Rfam database...	0.33	0.33	0.33	7	3219	14	3	11	0	14
SRP_00200	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6874	29	2	27	0	36
SRP_00209	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	4633	23	4	19	0	27
SRP_00213	Bacteria_small_SRP links to Rfam database...	0.39	0.40	0.38	10	4160	16	2	14	0	15
SRP_00215	Bacteria_small_SRP links to Rfam database...	0.51	0.40	0.67	10	3225	5	1	4	0	15
SRP_00227	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	5127	24	2	22	0	31
SRP_00228	Metazoa_SRP links to Rfam database...	0.10	0.09	0.12	9	45374	70	6	62	2	86
SRP_00231	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	5435	25	4	21	0	34
SRP_00233	Bacteria_small_SRP links to Rfam database...	0.63	0.61	0.67	20	5121	10	2	8	0	13
SRP_00243	Bacteria_small_SRP links to Rfam database...	0.45	0.39	0.52	12	5128	11	1	10	0	19
SRP_00244	Bacteria_small_SRP links to Rfam database...	0.12	0.10	0.16	4	6878	21	3	18	0	35
SRP_00250	Bacteria_small_SRP links to Rfam database...	0.11	0.11	0.12	4	6753	29	2	27	0	32
SRP_00251	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6993	28	2	26	0	36
SRP_00266	Bacteria_small_SRP links to Rfam database...	0.32	0.31	0.33	9	4629	18	2	16	0	20
SRP_00268	Bacteria_small_SRP links to Rfam database...	0.41	0.37	0.45	10	4164	12	3	9	0	17
SRP_00269	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	5022	28	4	24	0	33
SRP_00270	Bacteria_small_SRP links to Rfam database...	0.49	0.45	0.54	14	4630	12	3	9	0	17
SRP_00271	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	3222	18	3	15	0	24
SRP_00273	Bacteria_small_SRP links to Rfam database...	0.40	0.38	0.44	15	6752	19	3	16	0	25
SRP_00274	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	6871	32	2	30	0	38
SRP_00295	Bacteria_small_SRP links to Rfam database...	0.67	0.61	0.74	23	6872	8	3	5	0	15
SRP_00303	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6641	29	3	26	0	32
SRP_00310	Bacteria_small_SRP links to Rfam database...	0.19	0.17	0.22	4	2908	14	3	11	0	19
SRP_00312	Bacteria_small_SRP links to Rfam database...	0.37	0.37	0.38	10	4160	16	2	14	0	17
SRP_00315	Bacteria_small_SRP links to Rfam database...	0.18	0.17	0.20	4	2906	16	1	15	0	19
SRP_00317	Metazoa_SRP links to Rfam database...	0.10	0.09	0.11	9	45069	74	2	70	2	89
SRP_00318	Bacteria_small_SRP links to Rfam database...	0.19	0.17	0.22	4	2985	14	1	13	0	19
SRP_00325	Bacteria_small_SRP links to Rfam database...	0.63	0.61	0.67	20	4341	10	2	8	0	13
SRP_00326	Bacteria_small_SRP links to Rfam database...	0.24	0.23	0.26	7	5023	20	3	17	0	24
SRP_00333	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	5127	24	1	23	0	34
SRP_00337	Bacteria_large_SRP links to Rfam database...	0.07	0.07	0.08	6	35435	70	3	67	0	85
SRP_00338	Bacteria_small_SRP links to Rfam database...	0.24	0.22	0.28	8	5431	21	2	19	0	28
SRP_00341	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	4731	22	2	20	0	31
SRP_00342	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	3993	12	2	10	0	25
SRP_00347	Metazoa_SRP links to Rfam database...	0.08	0.07	0.09	7	46591	67	8	59	0	89
SRP_00350	Bacteria_small_SRP links to Rfam database...	0.37	0.33	0.43	9	3895	13	0	12	1	18
SRP_00356	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	5031	19	2	17	0	30
SRP_00357	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	5330	26	1	25	0	36
SRP_00358	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6302	26	2	24	0	35
SRP_00367	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6761	25	1	24	0	35
SRP_00368	Metazoa_SRP links to Rfam database...	0.10	0.09	0.12	9	43879	70	4	64	2	89
SRP_00369	Bacteria_small_SRP links to Rfam database...	0.47	0.43	0.52	15	5749	14	1	13	0	20
SRP_00383	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	3220	20	2	18	0	24
TMR_00017	tmRNA links to Rfam database...	0.33	0.29	0.37	30	67080	55	4	47	4	72
TMR_00018	tmRNA links to Rfam database...	0.24	0.23	0.25	21	64536	67	11	52	4	71
TMR_00038	tmRNA links to Rfam database...	0.37	0.35	0.40	39	71155	62	14	45	3	71
TMR_00042	tmRNA links to Rfam database...	0.20	0.18	0.22	18	62753	67	12	52	3	80
TMR_00046	tmRNA links to Rfam database...	0.25	0.25	0.26	24	62741	75	15	55	5	72
TMR_00048	tmRNA links to Rfam database...	0.23	0.22	0.24	21	64894	71	14	51	6	74
TMR_00080	tmRNA links to Rfam database...	0.14	0.14	0.14	13	70410	79	15	62	2	83
TMR_00082	tmRNA links to Rfam database...	0.24	0.23	0.26	22	67811	65	9	54	2	74
TMR_00123	tmRNA links to Rfam database...	0.35	0.33	0.38	33	66344	58	7	46	5	68
TMR_00137	tmRNA links to Rfam database...	0.08	0.08	0.09	7	60996	81	8	64	9	82
TMR_00142	tmRNA links to Rfam database...	0.09	0.09	0.10	9	70782	92	13	72	7	93
TMR_00207	tmRNA links to Rfam database...	0.17	0.17	0.18	17	72293	85	16	64	5	86
TMR_00257	tmRNA links to Rfam database...	0.10	0.09	0.11	9	67077	79	7	68	4	89
TMR_00271	tmRNA links to Rfam database...	0.21	0.19	0.23	17	64188	64	6	50	8	74
TMR_00332	tmRNA links to Rfam database...	0.19	0.17	0.21	17	67081	68	7	56	5	82
TMR_00366	tmRNA links to Rfam database...	0.17	0.16	0.18	16	67807	79	13	60	6	84
TMR_00378	tmRNA links to Rfam database...	0.20	0.20	0.20	19	67800	82	13	64	5	78
TMR_00399	tmRNA links to Rfam database...	0.17	0.17	0.18	16	64889	78	15	60	3	78
TMR_00404	tmRNA links to Rfam database...	0.28	0.28	0.27	26	67433	70	22	47	1	66
TMR_00427	tmRNA links to Rfam database...	0.12	0.11	0.13	11	67445	79	8	64	7	86
TMR_00443	tmRNA links to Rfam database...	0.17	0.14	0.20	15	67085	65	3	58	4	89
TMR_00451	tmRNA links to Rfam database...	0.17	0.16	0.18	14	63470	66	13	49	4	75
TMR_00458	tmRNA links to Rfam database...	0.16	0.15	0.17	14	63464	78	9	59	10	79
TMR_00469	tmRNA links to Rfam database...	0.34	0.33	0.34	33	64524	70	11	52	7	67
TMR_00472	tmRNA links to Rfam database...	0.35	0.35	0.35	34	64524	68	12	50	6	63
TMR_00519	tmRNA links to Rfam database...	0.23	0.22	0.25	21	63105	74	12	52	10	74
TMR_00520	tmRNA links to Rfam database...	0.23	0.21	0.24	21	63103	71	13	53	5	78
TMR_00522	tmRNA links to Rfam database...	0.12	0.11	0.14	11	63109	79	11	59	9	86
TMR_00528	tmRNA links to Rfam database...	0.08	0.07	0.09	7	63109	83	16	58	9	90
TMR_00540	tmRNA links to Rfam database...	0.09	0.09	0.10	9	73449	89	6	72	11	95
TMR_00568	tmRNA links to Rfam database...	0.14	0.13	0.16	13	60644	75	6	63	6	86
TMR_00571	tmRNA links to Rfam database...	0.19	0.18	0.20	18	60637	72	7	64	1	81
TMR_00580	tmRNA links to Rfam database...	0.28	0.27	0.30	27	60635	65	9	55	1	73
TMR_00584	tmRNA links to Rfam database...	0.37	0.34	0.40	33	60993	56	8	41	7	64
TMR_00586	tmRNA links to Rfam database...	0.25	0.23	0.27	22	60993	66	7	53	6	75
TMR_00616	tmRNA links to Rfam database...	0.28	0.26	0.30	26	67075	66	9	51	6	73
TMR_00699	tmRNA links to Rfam database...	0.15	0.14	0.17	14	67078	73	14	55	4	88
TMR_00702	tmRNA links to Rfam database...	0.17	0.15	0.19	15	67081	72	7	58	7	85
TMR_00703	tmRNA links to Rfam database...	0.32	0.29	0.35	29	67446	60	5	48	7	70

^top

Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.

Table of contents:

Overview

Performance plots

Performance of Murlet(20) - scored higher in this pairwise comparison

1. Total counts & total scores for Murlet(20)

2. Individual counts for Murlet(20) [ download as .csv ]

Performance of Vsfold4 - scored lower in this pairwise comparison

1. Total counts & total scores for Vsfold4

2. Individual counts for Vsfold4 [ download as .csv ]