CompaRNA - on-line benchmarks of RNA structure prediction methods

Laboratory of Structural Bioinformatics @ Adam Mickiewicz University in Poznan

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Overview

Metric	Murlet(seed)		Vsfold4
MCC	0.519	>	0.290
Average MCC ± 95% Confidence Intervals	0.389 ± 0.066	>	0.345 ± 0.052
Sensitivity	0.322	>	0.266
Positive Predictive Value	0.839	>	0.320
Total TP	1315	>	1087
Total TN	1508018	>	1506184
Total FP	308	<	2552
Total FP CONTRA	9	<	328
Total FP INCONS	243	<	1986
Total FP COMP	56	<	238
Total FN	2765	<	2993
P-value	3.56938820447e-08

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Performance plots

Comparison of performance of Murlet(seed) and Vsfold4. Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data (individual counts for Murlet(seed) and Vsfold4).
Average Matthews Correlation Coefficients (MCC) with 95% confidence intervals (CIs) were plotted for different RNA families, for which at least 3 members were present in the benchmarking dataset. 'n' denotes the number of MCCs used to calculate the average and CI. See tables below for raw data (individual counts for Murlet(seed) and Vsfold4).
Comparison of average Matthews Correlation Coefficients (MCCs) for Murlet(seed) and Vsfold4. The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data (individual counts for Murlet(seed) and Vsfold4).

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Performance of Murlet(seed) - scored higher in this pairwise comparison

1. Total counts & total scores for Murlet(seed)

Total Base Pair Counts
Total TP	1315
Total TN	1508018
Total FP	308
Total FP CONTRA	9
Total FP INCONS	243
Total FP COMP	56
Total FN	2765

Total Scores
MCC	0.519
Average MCC ± 95% Confidence Intervals	0.389 ± 0.066
Sensitivity	0.322
Positive Predictive Value	0.839
Nr of predictions	120

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2. Individual counts for Murlet(seed) [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
PDB_00005	Tymo_tRNA-like links to Rfam database...	0.53	0.29	1.00	4	942	2	0	0	2	10
PDB_00012	mir-TAR links to Rfam database...	0.65	0.43	1.00	3	403	0	0	0	0	4
PDB_00213	Gammaretro_CES links to Rfam database...	0.73	0.59	0.92	24	5024	2	0	2	0	17
PDB_00553	mir-TAR links to Rfam database...	0.45	0.27	0.75	3	461	1	0	1	0	8
PDB_00716	HDV_ribozyme links to Rfam database...	0.23	0.13	0.43	3	2694	4	0	4	0	20
PDB_00810	s2m links to Rfam database...	0.63	0.53	0.75	9	1069	3	0	3	0	8
PDB_01050	UnaL2 links to Rfam database...	0.55	0.31	1.00	4	626	1	0	0	1	9
PDB_01051	Telomerase-cil links to Rfam database...	0.00	0.00	0.00	0	903	0	0	0	0	13
PDB_01092	glmS links to Rfam database...	0.69	0.48	1.00	25	10128	0	0	0	0	27
PDB_01152	HIV_FS2 links to Rfam database...	0.76	0.64	0.90	9	551	1	0	1	0	5
RFA_00390	Hammerhead_3 links to Rfam database...	0.00	0.00	0.00	0	1431	0	0	0	0	15
RFA_00416	Hammerhead_3 links to Rfam database...	0.00	0.00	0.00	0	1485	0	0	0	0	15
RFA_00433	Hammerhead_3 links to Rfam database...	0.00	0.00	0.00	0	1431	0	0	0	0	15
RFA_00587	Y_RNA links to Rfam database...	0.00	0.00	0.00	0	4851	0	0	0	0	15
RFA_00603	Telomerase-cil links to Rfam database...	0.00	0.00	0.00	0	13530	0	0	0	0	35
RFA_00604	Telomerase-cil links to Rfam database...	0.00	0.00	0.00	0	13530	0	0	0	0	35
RFA_00605	Telomerase-cil links to Rfam database...	0.00	0.00	0.00	0	15225	0	0	0	0	35
RFA_00606	Telomerase-cil links to Rfam database...	0.00	0.00	0.00	0	21321	0	0	0	0	39
RFA_00607	Telomerase-cil links to Rfam database...	0.00	0.00	0.00	0	17766	0	0	0	0	36
RFA_00609	Telomerase-cil links to Rfam database...	0.00	0.00	0.00	0	17955	0	0	0	0	37
RFA_00610	Telomerase-cil links to Rfam database...	0.00	0.00	0.00	0	17205	0	0	0	0	37
RFA_00611	Telomerase-cil links to Rfam database...	0.00	0.00	0.00	0	13041	0	0	0	0	35
RFA_00613	Telomerase-cil links to Rfam database...	0.00	0.00	0.00	0	12880	0	0	0	0	35
RFA_00615	Telomerase-cil links to Rfam database...	0.00	0.00	0.00	0	13366	0	0	0	0	35
RFA_00620	Telomerase-cil links to Rfam database...	0.00	0.00	0.00	0	21945	0	0	0	0	39
RFA_00626	rne5 links to Rfam database...	0.81	0.66	1.00	57	56559	4	0	0	4	30
RFA_00627	rne5 links to Rfam database...	0.84	0.70	1.00	61	56892	5	0	0	5	26
RFA_00628	rne5 links to Rfam database...	0.83	0.69	1.00	59	57232	8	0	0	8	27
RFA_00630	rne5 links to Rfam database...	0.82	0.67	1.00	58	56895	4	0	0	4	29
RFA_00632	HDV_ribozyme links to Rfam database...	0.21	0.11	0.43	3	4088	4	0	4	0	25
RFA_00636	HDV_ribozyme links to Rfam database...	0.21	0.11	0.43	3	3998	4	0	4	0	25
RFA_00639	7SK links to Rfam database...	0.21	0.11	0.40	10	54590	15	4	11	0	77
RFA_00642	Vimentin3 links to Rfam database...	0.57	0.44	0.73	8	2915	3	0	3	0	10
RFA_00643	Vimentin3 links to Rfam database...	-0.01	0.00	0.00	0	2203	8	0	8	0	18
RFA_00644	Vimentin3 links to Rfam database...	0.42	0.33	0.55	6	2690	5	0	5	0	12
RFA_00645	Vimentin3 links to Rfam database...	0.00	0.00	0.00	0	2407	8	0	8	0	18
RFA_00649	Vimentin3 links to Rfam database...	-0.01	0.00	0.00	0	2137	8	0	8	0	18
RFA_00651	Vimentin3 links to Rfam database...	0.42	0.33	0.55	6	2069	5	0	5	0	12
RFA_00653	Vimentin3 links to Rfam database...	-0.01	0.00	0.00	0	2137	8	0	8	0	18
RFA_00654	Vimentin3 links to Rfam database...	0.57	0.44	0.73	8	2404	3	0	3	0	10
RFA_00658	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	1128	0	0	0	0	14
RFA_00659	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	1128	0	0	0	0	14
RFA_00664	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	990	0	0	0	0	14
RFA_00667	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	990	0	0	0	0	14
RFA_00668	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	990	0	0	0	0	14
RFA_00672	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	903	0	0	0	0	13
RFA_00673	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	1128	0	0	0	0	14
RFA_00674	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	1128	0	0	0	0	14
RFA_00675	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	990	0	0	0	0	14
RFA_00677	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	990	0	0	0	0	14
RFA_00678	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	946	0	0	0	0	14
RFA_00680	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	1128	0	0	0	0	14
RFA_00684	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	990	0	0	0	0	14
RFA_00685	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	990	0	0	0	0	14
RFA_00695	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	7021	0	0	0	0	14
RFA_00703	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	4278	0	0	0	0	14
RFA_00704	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	990	0	0	0	0	14
RFA_00705	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	1035	0	0	0	0	14
RFA_00706	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	1035	0	0	0	0	14
RFA_00707	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	1035	0	0	0	0	14
RFA_00708	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	1035	0	0	0	0	14
RFA_00709	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	990	0	0	0	0	14
RFA_00710	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	990	0	0	0	0	14
RFA_00711	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	1035	0	0	0	0	14
RFA_00715	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	946	0	0	0	0	14
RFA_00716	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	946	0	0	0	0	14
RFA_00717	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	903	0	0	0	0	14
RFA_00730	s2m links to Rfam database...	1.00	1.00	1.00	12	891	0	0	0	0	0
RFA_00731	s2m links to Rfam database...	1.00	1.00	1.00	12	891	0	0	0	0	0
RFA_00733	s2m links to Rfam database...	1.00	1.00	1.00	12	891	0	0	0	0	0
RFA_00734	s2m links to Rfam database...	1.00	1.00	1.00	12	891	0	0	0	0	0
RFA_00736	s2m links to Rfam database...	1.00	1.00	1.00	12	891	0	0	0	0	0
RFA_00737	s2m links to Rfam database...	1.00	1.00	1.00	12	891	0	0	0	0	0
RFA_00745	s2m links to Rfam database...	1.00	1.00	1.00	12	934	0	0	0	0	0
RFA_00749	s2m links to Rfam database...	1.00	1.00	1.00	12	891	0	0	0	0	0
RFA_00758	s2m links to Rfam database...	1.00	1.00	1.00	12	891	0	0	0	0	0
RFA_00762	s2m links to Rfam database...	1.00	1.00	1.00	12	891	0	0	0	0	0
RFA_00763	s2m links to Rfam database...	1.00	1.00	1.00	12	891	0	0	0	0	0
RFA_00764	s2m links to Rfam database...	1.00	1.00	1.00	12	891	0	0	0	0	0
RFA_00765	s2m links to Rfam database...	1.00	1.00	1.00	12	891	0	0	0	0	0
RFA_00767	Corona_pk3 links to Rfam database...	0.47	0.33	0.67	6	1882	3	0	3	0	12
RFA_00768	Corona_pk3 links to Rfam database...	0.41	0.28	0.63	5	1883	3	0	3	0	13
RFA_00769	Corona_pk3 links to Rfam database...	0.57	0.44	0.73	8	1942	3	0	3	0	10
RFA_00770	Corona_pk3 links to Rfam database...	0.57	0.44	0.73	8	2005	3	0	3	0	10
RFA_00773	Corona_pk3 links to Rfam database...	0.41	0.28	0.63	5	1945	3	0	3	0	13
RFA_00779	Corona_pk3 links to Rfam database...	0.47	0.33	0.67	6	1944	3	0	3	0	12
RFA_00781	Gammaretro_CES links to Rfam database...	0.83	0.75	0.92	24	5024	2	0	2	0	8
RFA_00786	Gammaretro_CES links to Rfam database...	0.83	0.75	0.92	24	5024	2	0	2	0	8
RFA_00791	Gammaretro_CES links to Rfam database...	0.83	0.75	0.92	24	5125	2	0	2	0	8
RFA_00792	Gammaretro_CES links to Rfam database...	0.83	0.75	0.92	24	5024	2	0	2	0	8
RFA_00801	Gammaretro_CES links to Rfam database...	0.80	0.72	0.88	23	5024	3	0	3	0	9
RFA_00808	RydC links to Rfam database...	0.75	0.56	1.00	9	2007	0	0	0	0	7
RFA_00809	RydC links to Rfam database...	0.50	0.38	0.67	6	2136	3	0	3	0	10
RFA_00814	R2_retro_el links to Rfam database...	0.75	0.63	0.90	26	25171	4	0	3	1	15
RFA_00815	R2_retro_el links to Rfam database...	0.83	0.68	1.00	28	24503	1	0	0	1	13
RFA_00816	R2_retro_el links to Rfam database...	0.75	0.63	0.90	26	23191	4	0	3	1	15
RFA_00817	R2_retro_el links to Rfam database...	0.83	0.68	1.00	28	21917	1	0	0	1	13
RFA_00818	R2_retro_el links to Rfam database...	0.83	0.68	1.00	28	20273	1	0	0	1	13
RFA_00819	R2_retro_el links to Rfam database...	0.83	0.68	1.00	28	27938	0	0	0	0	13
SRP_00079	Plant_SRP links to Rfam database...	0.54	0.33	0.88	29	41872	6	0	4	2	59
SRP_00124	Metazoa_SRP links to Rfam database...	0.15	0.09	0.24	8	37094	27	3	23	1	77
SRP_00137	Bacteria_small_SRP links to Rfam database...	0.49	0.24	1.00	6	4180	0	0	0	0	19
SRP_00141	Bacteria_small_SRP links to Rfam database...	0.35	0.12	1.00	5	6323	1	0	0	1	36
SRP_00146	Bacteria_small_SRP links to Rfam database...	0.41	0.17	1.00	6	5247	0	0	0	0	30
SRP_00182	Plant_SRP links to Rfam database...	0.59	0.35	1.00	35	46021	1	0	0	1	66
SRP_00197	Archaea_SRP links to Rfam database...	0.47	0.28	0.80	28	49420	8	0	7	1	73
SRP_00198	Archaea_SRP links to Rfam database...	0.47	0.27	0.82	28	51006	7	0	6	1	75
SRP_00199	Archaea_SRP links to Rfam database...	0.47	0.24	0.93	25	51013	3	0	2	1	80
SRP_00202	Archaea_SRP links to Rfam database...	0.48	0.25	0.94	29	54254	2	0	2	0	88
SRP_00241	Plant_SRP links to Rfam database...	0.51	0.33	0.79	27	46022	9	0	7	2	55
SRP_00255	Archaea_SRP links to Rfam database...	0.65	0.43	1.00	40	47546	2	0	0	2	54
SRP_00260	Metazoa_SRP links to Rfam database...	0.21	0.14	0.33	14	47852	29	1	28	0	86
SRP_00278	Archaea_SRP links to Rfam database...	0.53	0.30	0.94	31	46023	3	0	2	1	74
SRP_00285	Bacteria_small_SRP links to Rfam database...	0.45	0.20	1.00	6	3735	0	0	0	0	24
SRP_00322	Archaea_SRP links to Rfam database...	0.44	0.25	0.79	27	48482	8	0	7	1	82
SRP_00328	Metazoa_SRP links to Rfam database...	0.49	0.34	0.71	29	39580	16	1	11	4	56
SRP_00329	Metazoa_SRP links to Rfam database...	0.50	0.34	0.73	29	39863	16	0	11	5	56
SRP_00338	Bacteria_small_SRP links to Rfam database...	0.41	0.17	1.00	6	5454	0	0	0	0	30
SRP_00339	Archaea_SRP links to Rfam database...	0.49	0.32	0.77	30	44512	9	0	9	0	64
SRP_00340	Metazoa_SRP links to Rfam database...	0.44	0.27	0.73	22	41298	12	0	8	4	60

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Performance of Vsfold4 - scored lower in this pairwise comparison

1. Total counts & total scores for Vsfold4

Total Base Pair Counts
Total TP	1087
Total TN	1506184
Total FP	2552
Total FP CONTRA	328
Total FP INCONS	1986
Total FP COMP	238
Total FN	2993

Total Scores
MCC	0.290
Average MCC ± 95% Confidence Intervals	0.345 ± 0.052
Sensitivity	0.266
Positive Predictive Value	0.320
Nr of predictions	120

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2. Individual counts for Vsfold4 [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
PDB_00005	Tymo_tRNA-like links to Rfam database...	0.84	0.71	1.00	10	936	0	0	0	0	4
PDB_00012	mir-TAR links to Rfam database...	1.00	1.00	1.00	7	399	3	0	0	3	0
PDB_00213	Gammaretro_CES links to Rfam database...	0.46	0.41	0.52	17	5017	16	0	16	0	24
PDB_00553	mir-TAR links to Rfam database...	1.00	1.00	1.00	11	454	0	0	0	0	0
PDB_00716	HDV_ribozyme links to Rfam database...	0.17	0.17	0.18	4	2679	19	0	18	1	19
PDB_00810	s2m links to Rfam database...	0.45	0.35	0.60	6	1071	4	2	2	0	11
PDB_01050	UnaL2 links to Rfam database...	0.92	0.85	1.00	11	619	2	0	0	2	2
PDB_01051	Telomerase-cil links to Rfam database...	0.36	0.38	0.36	5	889	9	2	7	0	8
PDB_01092	glmS links to Rfam database...	0.66	0.58	0.77	30	10114	10	2	7	1	22
PDB_01152	HIV_FS2 links to Rfam database...	0.88	0.79	1.00	11	550	0	0	0	0	3
RFA_00390	Hammerhead_3 links to Rfam database...	0.93	0.87	1.00	13	1418	2	0	0	2	2
RFA_00416	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1471	3	0	0	3	1
RFA_00433	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	2	0	0	2	1
RFA_00587	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4836	11	0	0	11	0
RFA_00603	Telomerase-cil links to Rfam database...	0.30	0.29	0.32	10	13499	21	5	16	0	25
RFA_00604	Telomerase-cil links to Rfam database...	0.52	0.49	0.57	17	13500	18	8	5	5	18
RFA_00605	Telomerase-cil links to Rfam database...	0.19	0.17	0.22	6	15198	33	3	18	12	29
RFA_00606	Telomerase-cil links to Rfam database...	0.34	0.36	0.33	14	21278	40	5	24	11	25
RFA_00607	Telomerase-cil links to Rfam database...	0.61	0.56	0.67	20	17736	23	2	8	13	16
RFA_00609	Telomerase-cil links to Rfam database...	0.56	0.59	0.54	22	17914	27	4	15	8	15
RFA_00610	Telomerase-cil links to Rfam database...	0.64	0.65	0.63	24	17167	23	2	12	9	13
RFA_00611	Telomerase-cil links to Rfam database...	0.56	0.54	0.58	19	13008	17	3	11	3	16
RFA_00613	Telomerase-cil links to Rfam database...	0.27	0.26	0.29	9	12849	25	5	17	3	26
RFA_00615	Telomerase-cil links to Rfam database...	0.31	0.29	0.34	10	13337	19	7	12	0	25
RFA_00620	Telomerase-cil links to Rfam database...	0.22	0.23	0.21	9	21903	40	11	22	7	30
RFA_00626	rne5 links to Rfam database...	0.20	0.18	0.22	16	56543	61	11	46	4	71
RFA_00627	rne5 links to Rfam database...	0.23	0.22	0.24	19	56874	63	13	47	3	68
RFA_00628	rne5 links to Rfam database...	0.24	0.22	0.26	19	57218	64	8	46	10	67
RFA_00630	rne5 links to Rfam database...	0.30	0.29	0.32	25	56875	58	3	50	5	62
RFA_00632	HDV_ribozyme links to Rfam database...	0.36	0.36	0.37	10	4068	17	3	14	0	18
RFA_00636	HDV_ribozyme links to Rfam database...	0.58	0.57	0.59	16	3978	11	1	10	0	12
RFA_00639	7SK links to Rfam database...	0.23	0.22	0.24	19	54537	63	12	47	4	68
RFA_00642	Vimentin3 links to Rfam database...	0.00	0.00	0.00	0	2915	11	1	10	0	18
RFA_00643	Vimentin3 links to Rfam database...	0.45	0.39	0.54	7	2198	6	0	6	0	11
RFA_00644	Vimentin3 links to Rfam database...	0.22	0.22	0.22	4	2683	14	1	13	0	14
RFA_00645	Vimentin3 links to Rfam database...	-0.01	0.00	0.00	0	2404	11	0	11	0	18
RFA_00649	Vimentin3 links to Rfam database...	-0.01	0.00	0.00	0	2130	15	1	14	0	18
RFA_00651	Vimentin3 links to Rfam database...	0.41	0.39	0.44	7	2064	9	1	8	0	11
RFA_00653	Vimentin3 links to Rfam database...	-0.01	0.00	0.00	0	2134	11	0	11	0	18
RFA_00654	Vimentin3 links to Rfam database...	0.54	0.44	0.67	8	2403	5	1	3	1	10
RFA_00658	Hammerhead_1 links to Rfam database...	0.40	0.29	0.57	4	1121	5	0	3	2	10
RFA_00659	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	1122	8	0	6	2	14
RFA_00664	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	980	11	0	10	1	14
RFA_00667	Hammerhead_1 links to Rfam database...	0.22	0.21	0.25	3	978	10	1	8	1	11
RFA_00668	Hammerhead_1 links to Rfam database...	0.40	0.36	0.45	5	979	6	0	6	0	9
RFA_00672	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	897	6	0	6	0	13
RFA_00673	Hammerhead_1 links to Rfam database...	0.40	0.29	0.57	4	1121	4	0	3	1	10
RFA_00674	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	1118	10	0	10	0	14
RFA_00675	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	981	9	1	8	0	14
RFA_00677	Hammerhead_1 links to Rfam database...	0.64	0.57	0.73	8	979	5	0	3	2	6
RFA_00678	Hammerhead_1 links to Rfam database...	0.32	0.21	0.50	3	940	3	0	3	0	11
RFA_00680	Hammerhead_1 links to Rfam database...	0.69	0.64	0.75	9	1116	6	0	3	3	5
RFA_00684	Hammerhead_1 links to Rfam database...	0.75	0.57	1.00	8	982	1	0	0	1	6
RFA_00685	Hammerhead_1 links to Rfam database...	0.35	0.29	0.44	4	981	6	0	5	1	10
RFA_00695	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	7014	26	2	5	19	14
RFA_00703	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	4270	22	2	6	14	14
RFA_00704	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	983	8	0	7	1	14
RFA_00705	Hammerhead_1 links to Rfam database...	0.69	0.64	0.75	9	1023	4	0	3	1	5
RFA_00706	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	1024	11	2	9	0	14
RFA_00707	Hammerhead_1 links to Rfam database...	0.31	0.29	0.36	4	1024	7	0	7	0	10
RFA_00708	Hammerhead_1 links to Rfam database...	0.40	0.29	0.57	4	1028	4	0	3	1	10
RFA_00709	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	985	6	0	5	1	14
RFA_00710	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	980	10	0	10	0	14
RFA_00711	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	1026	9	0	9	0	14
RFA_00715	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	937	9	0	9	0	14
RFA_00716	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	936	10	0	10	0	14
RFA_00717	Hammerhead_1 links to Rfam database...	0.39	0.36	0.45	5	892	6	0	6	0	9
RFA_00730	s2m links to Rfam database...	0.64	0.42	1.00	5	898	1	0	0	1	7
RFA_00731	s2m links to Rfam database...	0.64	0.42	1.00	5	898	1	0	0	1	7
RFA_00733	s2m links to Rfam database...	0.64	0.42	1.00	5	898	1	0	0	1	7
RFA_00734	s2m links to Rfam database...	0.34	0.33	0.36	4	892	7	2	5	0	8
RFA_00736	s2m links to Rfam database...	0.64	0.42	1.00	5	898	1	0	0	1	7
RFA_00737	s2m links to Rfam database...	0.64	0.42	1.00	5	898	1	0	0	1	7
RFA_00745	s2m links to Rfam database...	-0.01	0.00	0.00	0	941	5	1	4	0	12
RFA_00749	s2m links to Rfam database...	0.64	0.42	1.00	5	898	1	0	0	1	7
RFA_00758	s2m links to Rfam database...	-0.01	0.00	0.00	0	898	5	0	5	0	12
RFA_00762	s2m links to Rfam database...	0.39	0.42	0.38	5	890	8	2	6	0	7
RFA_00763	s2m links to Rfam database...	0.64	0.42	1.00	5	898	0	0	0	0	7
RFA_00764	s2m links to Rfam database...	0.64	0.42	1.00	5	898	1	0	0	1	7
RFA_00765	s2m links to Rfam database...	0.64	0.42	1.00	5	898	1	0	0	1	7
RFA_00767	Corona_pk3 links to Rfam database...	-0.01	0.00	0.00	0	1878	13	1	12	0	18
RFA_00768	Corona_pk3 links to Rfam database...	-0.01	0.00	0.00	0	1875	16	1	15	0	18
RFA_00769	Corona_pk3 links to Rfam database...	0.50	0.50	0.50	9	1935	9	4	5	0	9
RFA_00770	Corona_pk3 links to Rfam database...	-0.01	0.00	0.00	0	2003	15	2	11	2	18
RFA_00773	Corona_pk3 links to Rfam database...	-0.01	0.00	0.00	0	1936	19	1	16	2	18
RFA_00779	Corona_pk3 links to Rfam database...	0.65	0.56	0.77	10	1940	3	2	1	0	8
RFA_00781	Gammaretro_CES links to Rfam database...	0.56	0.53	0.59	17	5021	12	1	11	0	15
RFA_00786	Gammaretro_CES links to Rfam database...	0.39	0.34	0.44	11	5025	14	1	13	0	21
RFA_00791	Gammaretro_CES links to Rfam database...	0.41	0.34	0.50	11	5129	11	1	10	0	21
RFA_00792	Gammaretro_CES links to Rfam database...	0.57	0.53	0.61	17	5022	11	0	11	0	15
RFA_00801	Gammaretro_CES links to Rfam database...	0.53	0.50	0.57	16	5022	12	2	10	0	16
RFA_00808	RydC links to Rfam database...	0.62	0.56	0.69	9	2003	4	3	1	0	7
RFA_00809	RydC links to Rfam database...	0.40	0.38	0.43	6	2131	8	1	7	0	10
RFA_00814	R2_retro_el links to Rfam database...	0.41	0.39	0.43	16	25163	33	3	18	12	25
RFA_00815	R2_retro_el links to Rfam database...	0.11	0.12	0.10	5	24483	47	6	37	4	36
RFA_00816	R2_retro_el links to Rfam database...	0.12	0.12	0.13	5	23181	42	9	25	8	36
RFA_00817	R2_retro_el links to Rfam database...	0.11	0.12	0.11	5	21898	42	16	26	0	36
RFA_00818	R2_retro_el links to Rfam database...	0.00	0.00	0.00	0	20265	46	10	26	10	41
RFA_00819	R2_retro_el links to Rfam database...	0.20	0.20	0.21	8	27928	45	6	24	15	33
SRP_00079	Plant_SRP links to Rfam database...	0.09	0.09	0.10	8	41827	71	4	66	1	80
SRP_00124	Metazoa_SRP links to Rfam database...	0.16	0.14	0.19	12	37066	50	5	45	0	73
SRP_00137	Bacteria_small_SRP links to Rfam database...	0.39	0.40	0.38	10	4160	16	4	12	0	15
SRP_00141	Bacteria_small_SRP links to Rfam database...	0.55	0.49	0.63	20	6296	12	2	10	0	21
SRP_00146	Bacteria_small_SRP links to Rfam database...	0.36	0.33	0.40	12	5223	18	2	16	0	24
SRP_00182	Plant_SRP links to Rfam database...	0.34	0.32	0.36	32	45968	56	10	46	0	69
SRP_00197	Archaea_SRP links to Rfam database...	0.08	0.07	0.09	7	49377	71	8	63	0	94
SRP_00198	Archaea_SRP links to Rfam database...	0.00	0.00	0.00	0	50960	80	8	72	0	103
SRP_00199	Archaea_SRP links to Rfam database...	0.16	0.15	0.18	16	50949	75	5	70	0	89
SRP_00202	Archaea_SRP links to Rfam database...	0.58	0.56	0.61	65	54179	41	3	38	0	52
SRP_00241	Plant_SRP links to Rfam database...	0.07	0.07	0.08	6	45978	74	13	59	2	76
SRP_00255	Archaea_SRP links to Rfam database...	0.21	0.21	0.22	20	47495	71	10	61	0	74
SRP_00260	Metazoa_SRP links to Rfam database...	0.40	0.36	0.45	36	47815	44	4	40	0	64
SRP_00278	Archaea_SRP links to Rfam database...	0.13	0.12	0.14	13	45965	78	5	73	0	92
SRP_00285	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	3719	22	2	20	0	30
SRP_00322	Archaea_SRP links to Rfam database...	0.18	0.17	0.19	18	48423	75	5	70	0	91
SRP_00328	Metazoa_SRP links to Rfam database...	0.18	0.16	0.20	14	39550	57	11	46	0	71
SRP_00329	Metazoa_SRP links to Rfam database...	0.17	0.15	0.20	13	39839	51	5	46	0	72
SRP_00338	Bacteria_small_SRP links to Rfam database...	0.24	0.22	0.28	8	5431	21	2	19	0	28
SRP_00339	Archaea_SRP links to Rfam database...	0.18	0.17	0.19	16	44467	68	9	59	0	78
SRP_00340	Metazoa_SRP links to Rfam database...	0.18	0.17	0.19	14	41256	58	11	47	0	68

^top

Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.

Table of contents:

Overview

Performance plots

Performance of Murlet(seed) - scored higher in this pairwise comparison

1. Total counts & total scores for Murlet(seed)

2. Individual counts for Murlet(seed) [ download as .csv ]

Performance of Vsfold4 - scored lower in this pairwise comparison

1. Total counts & total scores for Vsfold4

2. Individual counts for Vsfold4 [ download as .csv ]