CompaRNA - on-line benchmarks of RNA structure prediction methods

Laboratory of Structural Bioinformatics @ Adam Mickiewicz University in Poznan

Home

Methods

Datasets

Rankings

RNA 2D Atlas

Help

FAQ

Contact us

RSS feeds

Twitter

Overview

Metric	PETfold_pre2.0(20)		Fold
MCC	0.744	>	0.485
Average MCC ± 95% Confidence Intervals	0.778 ± 0.017	>	0.619 ± 0.019
Sensitivity	0.686	>	0.485
Positive Predictive Value	0.807	>	0.485
Total TP	48059	>	33989
Total TN	119672380	>	119661784
Total FP	16070	<	40644
Total FP CONTRA	2215	<	5326
Total FP INCONS	9243	<	30798
Total FP COMP	4612	>	4520
Total FN	21960	<	36030
P-value	3.56938820447e-08

^top

Performance plots

Comparison of performance of PETfold_pre2.0(20) and Fold. Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data (individual counts for PETfold_pre2.0(20) and Fold).
Average Matthews Correlation Coefficients (MCC) with 95% confidence intervals (CIs) were plotted for different RNA families, for which at least 3 members were present in the benchmarking dataset. 'n' denotes the number of MCCs used to calculate the average and CI. See tables below for raw data (individual counts for PETfold_pre2.0(20) and Fold).
Comparison of average Matthews Correlation Coefficients (MCCs) for PETfold_pre2.0(20) and Fold. The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data (individual counts for PETfold_pre2.0(20) and Fold).

^top

Performance of PETfold_pre2.0(20) - scored higher in this pairwise comparison

1. Total counts & total scores for PETfold_pre2.0(20)

Total Base Pair Counts
Total TP	48059
Total TN	119672380
Total FP	16070
Total FP CONTRA	2215
Total FP INCONS	9243
Total FP COMP	4612
Total FN	21960

Total Scores
MCC	0.744
Average MCC ± 95% Confidence Intervals	0.778 ± 0.017
Sensitivity	0.686
Positive Predictive Value	0.807
Nr of predictions	639

^top

2. Individual counts for PETfold_pre2.0(20) [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00004	RNaseP_bact_a links to Rfam database...	0.67	0.57	0.80	55	47826	18	1	13	4	42
ASE_00005	RNaseP_bact_a links to Rfam database...	0.76	0.65	0.88	76	57884	14	3	7	4	41
ASE_00006	RNaseP_bact_a links to Rfam database...	0.70	0.61	0.80	57	47515	17	1	13	3	36
ASE_00007	RNaseP_bact_a links to Rfam database...	0.84	0.82	0.87	90	59581	19	4	10	5	20
ASE_00012	RNaseP_bact_a links to Rfam database...	0.70	0.64	0.77	79	73818	28	5	18	5	44
ASE_00018	RNaseP_bact_a links to Rfam database...	0.77	0.68	0.87	91	80496	18	5	9	4	43
ASE_00020	RNaseP_bact_a links to Rfam database...	0.66	0.53	0.83	67	73839	20	7	7	6	59
ASE_00021	RNaseP_bact_a links to Rfam database...	0.58	0.48	0.72	76	104090	33	7	23	3	84
ASE_00022	RNaseP_bact_b links to Rfam database...	0.77	0.71	0.85	88	82924	25	3	13	9	36
ASE_00028	RNaseP_bact_b links to Rfam database...	0.74	0.65	0.85	82	84569	23	3	12	8	44
ASE_00035	RNaseP_bact_a links to Rfam database...	0.79	0.74	0.85	87	70398	23	4	11	8	31
ASE_00037	RNaseP_bact_a links to Rfam database...	0.85	0.82	0.89	90	59239	16	4	7	5	20
ASE_00038	RNaseP_bact_a links to Rfam database...	0.79	0.71	0.88	72	53546	15	3	7	5	29
ASE_00040	RNaseP_bact_a links to Rfam database...	0.82	0.72	0.92	96	78899	12	2	6	4	37
ASE_00041	RNaseP_bact_a links to Rfam database...	0.82	0.81	0.84	87	57527	19	2	14	3	21
ASE_00042	RNaseP_bact_a links to Rfam database...	0.67	0.57	0.79	83	89995	27	3	19	5	62
ASE_00044	RNaseP_bact_a links to Rfam database...	0.89	0.88	0.90	92	54513	13	4	6	3	13
ASE_00045	RNaseP_bact_b links to Rfam database...	0.77	0.76	0.78	61	47200	25	3	14	8	19
ASE_00064	RNaseP_bact_a links to Rfam database...	0.79	0.74	0.85	66	45373	18	3	9	6	23
ASE_00068	RNaseP_bact_a links to Rfam database...	0.64	0.54	0.75	46	37614	18	5	10	3	39
ASE_00074	RNaseP_bact_a links to Rfam database...	0.84	0.79	0.90	94	67792	15	4	6	5	25
ASE_00075	RNaseP_bact_a links to Rfam database...	0.60	0.48	0.76	78	108708	30	6	19	5	84
ASE_00077	RNaseP_bact_a links to Rfam database...	0.85	0.84	0.87	72	45067	17	5	6	6	14
ASE_00078	RNaseP_bact_a links to Rfam database...	0.87	0.86	0.89	71	42991	16	3	6	7	12
ASE_00080	RNaseP_bact_a links to Rfam database...	0.46	0.37	0.58	46	71551	38	4	30	4	77
ASE_00081	RNaseP_bact_a links to Rfam database...	0.81	0.72	0.91	70	49693	11	1	6	4	27
ASE_00082	RNaseP_bact_a links to Rfam database...	0.67	0.55	0.81	64	70421	23	3	12	8	52
ASE_00083	RNaseP_bact_a links to Rfam database...	0.76	0.65	0.90	71	62402	11	4	4	3	39
ASE_00084	RNaseP_bact_a links to Rfam database...	0.73	0.66	0.80	65	53547	20	5	11	4	34
ASE_00087	RNaseP_bact_a links to Rfam database...	0.64	0.47	0.89	67	88335	13	1	7	5	77
ASE_00090	RNaseP_bact_a links to Rfam database...	0.81	0.72	0.90	73	55530	13	3	5	5	28
ASE_00092	RNaseP_bact_a links to Rfam database...	0.69	0.58	0.82	65	63467	20	3	11	6	48
ASE_00099	RNaseP_bact_a links to Rfam database...	0.85	0.78	0.91	94	64517	14	3	6	5	26
ASE_00104	RNaseP_bact_a links to Rfam database...	0.85	0.81	0.90	96	64154	17	4	7	6	23
ASE_00105	RNaseP_bact_a links to Rfam database...	0.57	0.49	0.66	54	64179	33	7	21	5	57
ASE_00107	RNaseP_bact_a links to Rfam database...	0.83	0.76	0.91	96	73047	14	4	6	4	31
ASE_00114	RNaseP_bact_b links to Rfam database...	0.66	0.64	0.68	49	45379	34	1	22	11	28
ASE_00115	RNaseP_bact_a links to Rfam database...	0.78	0.68	0.88	69	54537	12	2	7	3	32
ASE_00118	RNaseP_bact_a links to Rfam database...	0.73	0.64	0.83	65	60648	18	4	9	5	37
ASE_00119	RNaseP_bact_a links to Rfam database...	0.66	0.53	0.81	57	62765	16	5	8	3	51
ASE_00123	RNaseP_bact_a links to Rfam database...	0.73	0.64	0.83	54	38438	14	4	7	3	31
ASE_00125	RNaseP_bact_a links to Rfam database...	0.72	0.61	0.86	54	39277	16	2	7	7	34
ASE_00126	RNaseP_bact_a links to Rfam database...	0.86	0.84	0.88	69	40392	16	4	5	7	13
ASE_00128	RNaseP_bact_a links to Rfam database...	0.81	0.72	0.91	72	53222	11	2	5	4	28
ASE_00129	RNaseP_bact_a links to Rfam database...	0.77	0.66	0.90	73	62754	12	4	4	4	38
ASE_00131	RNaseP_bact_a links to Rfam database...	0.74	0.62	0.87	53	39279	15	3	5	7	32
ASE_00134	RNaseP_bact_a links to Rfam database...	0.78	0.73	0.83	69	50320	18	4	10	4	26
ASE_00135	RNaseP_bact_a links to Rfam database...	0.63	0.55	0.71	60	63106	27	5	19	3	49
ASE_00136	RNaseP_bact_a links to Rfam database...	0.82	0.76	0.89	70	48126	13	4	5	4	22
ASE_00137	RNaseP_bact_a links to Rfam database...	0.81	0.69	0.96	68	48445	7	2	1	4	30
ASE_00138	RNaseP_bact_a links to Rfam database...	0.83	0.79	0.88	64	40397	14	2	7	5	17
ASE_00140	RNaseP_bact_a links to Rfam database...	0.68	0.55	0.83	69	70793	20	7	7	6	56
ASE_00142	RNaseP_bact_a links to Rfam database...	0.83	0.76	0.91	93	67059	15	3	6	6	29
ASE_00146	RNaseP_bact_a links to Rfam database...	0.80	0.73	0.89	90	70775	16	4	7	5	34
ASE_00153	RNaseP_nuc links to Rfam database...	0.40	0.37	0.44	27	57569	41	7	27	7	46
ASE_00161	RNaseP_bact_b links to Rfam database...	0.74	0.72	0.76	63	53545	29	3	17	9	24
ASE_00163	RNaseP_bact_a links to Rfam database...	0.81	0.76	0.87	71	53219	15	4	7	4	22
ASE_00165	RNaseP_bact_a links to Rfam database...	0.79	0.67	0.93	68	52902	10	2	3	5	33
ASE_00170	RNaseP_bact_a links to Rfam database...	0.72	0.67	0.78	62	48748	24	5	13	6	31
ASE_00171	RNaseP_bact_a links to Rfam database...	0.82	0.76	0.90	71	48437	14	3	5	6	23
ASE_00172	RNaseP_bact_a links to Rfam database...	0.76	0.66	0.88	70	58916	14	5	5	4	36
ASE_00174	RNaseP_bact_a links to Rfam database...	0.66	0.55	0.79	60	60999	19	2	14	3	49
ASE_00175	RNaseP_bact_a links to Rfam database...	0.73	0.64	0.84	68	59950	17	2	11	4	39
ASE_00179	RNaseP_bact_a links to Rfam database...	0.82	0.80	0.85	67	44174	18	5	7	6	17
ASE_00180	RNaseP_bact_a links to Rfam database...	0.77	0.70	0.85	70	51278	16	4	8	4	30
ASE_00181	RNaseP_bact_a links to Rfam database...	0.70	0.59	0.82	63	57553	20	5	9	6	43
ASE_00182	RNaseP_bact_a links to Rfam database...	0.68	0.53	0.88	72	84173	14	4	6	4	64
ASE_00183	RNaseP_bact_a links to Rfam database...	0.76	0.65	0.89	73	61343	12	3	6	3	40
ASE_00184	RNaseP_bact_a links to Rfam database...	0.76	0.68	0.86	69	54535	14	4	7	3	33
ASE_00185	RNaseP_bact_a links to Rfam database...	0.69	0.53	0.91	68	73461	12	3	4	5	60
ASE_00186	RNaseP_bact_a links to Rfam database...	0.71	0.62	0.81	82	78902	24	2	17	5	50
ASE_00190	RNaseP_bact_b links to Rfam database...	0.73	0.64	0.82	58	45380	21	3	10	8	32
ASE_00197	RNaseP_bact_a links to Rfam database...	0.67	0.56	0.80	81	89152	26	2	18	6	64
ASE_00198	RNaseP_bact_a links to Rfam database...	0.80	0.72	0.90	73	52569	11	3	5	3	29
ASE_00203	RNaseP_bact_a links to Rfam database...	0.81	0.72	0.91	69	46589	11	2	5	4	27
ASE_00212	RNaseP_bact_a links to Rfam database...	0.66	0.53	0.81	79	93864	22	2	16	4	69
ASE_00214	RNaseP_bact_a links to Rfam database...	0.79	0.69	0.90	71	56201	13	3	5	5	32
ASE_00215	RNaseP_bact_a links to Rfam database...	0.60	0.47	0.77	47	48455	18	4	10	4	52
ASE_00216	RNaseP_bact_a links to Rfam database...	0.90	0.84	0.96	69	39268	9	3	0	6	13
ASE_00217	RNaseP_bact_a links to Rfam database...	0.82	0.77	0.87	69	40391	15	4	6	5	21
ASE_00221	RNaseP_bact_a links to Rfam database...	0.85	0.79	0.90	93	64517	14	4	6	4	24
ASE_00228	RNaseP_bact_a links to Rfam database...	0.75	0.69	0.83	59	46900	16	2	10	4	27
ASE_00229	RNaseP_bact_a links to Rfam database...	0.88	0.80	0.96	70	42413	7	2	1	4	17
ASE_00231	RNaseP_bact_a links to Rfam database...	0.67	0.57	0.77	55	47824	22	0	16	6	41
ASE_00232	RNaseP_bact_a links to Rfam database...	0.88	0.82	0.95	69	38430	8	3	1	4	15
ASE_00234	RNaseP_bact_a links to Rfam database...	0.64	0.52	0.79	67	75381	22	8	10	4	62
ASE_00238	RNaseP_bact_a links to Rfam database...	0.65	0.55	0.77	63	64179	25	5	14	6	51
ASE_00241	RNaseP_bact_a links to Rfam database...	0.85	0.84	0.87	73	43872	15	4	7	4	14
ASE_00242	RNaseP_bact_a links to Rfam database...	0.87	0.85	0.90	95	60969	17	4	7	6	17
ASE_00248	RNaseP_bact_a links to Rfam database...	0.84	0.81	0.88	92	62376	18	4	9	5	22
ASE_00254	RNaseP_bact_a links to Rfam database...	0.90	0.82	0.99	67	36788	6	1	0	5	15
ASE_00255	RNaseP_bact_a links to Rfam database...	0.60	0.55	0.67	71	74585	35	5	30	0	59
ASE_00257	RNaseP_bact_a links to Rfam database...	0.73	0.66	0.80	64	50960	21	5	11	5	33
ASE_00263	RNaseP_bact_a links to Rfam database...	0.74	0.61	0.89	73	70418	14	3	6	5	47
ASE_00267	RNaseP_bact_a links to Rfam database...	0.83	0.78	0.88	69	45072	15	4	5	6	19
ASE_00270	RNaseP_bact_a links to Rfam database...	0.58	0.44	0.77	56	72317	21	2	15	4	72
ASE_00274	RNaseP_bact_a links to Rfam database...	0.68	0.60	0.78	62	55531	22	5	13	4	41
ASE_00277	RNaseP_bact_a links to Rfam database...	0.73	0.67	0.79	61	48128	20	6	10	4	30
ASE_00279	RNaseP_bact_a links to Rfam database...	0.79	0.69	0.90	70	53223	13	2	6	5	31
ASE_00280	RNaseP_bact_a links to Rfam database...	0.71	0.64	0.79	63	51923	21	4	13	4	35
ASE_00281	RNaseP_bact_a links to Rfam database...	0.85	0.81	0.89	71	44471	12	4	5	3	17
ASE_00282	RNaseP_bact_a links to Rfam database...	0.71	0.57	0.90	72	77735	12	4	4	4	55
ASE_00283	RNaseP_bact_a links to Rfam database...	0.76	0.66	0.87	71	61694	14	4	7	3	36
ASE_00284	RNaseP_bact_a links to Rfam database...	0.78	0.67	0.91	72	58232	11	3	4	4	36
ASE_00285	RNaseP_bact_a links to Rfam database...	0.73	0.59	0.90	72	68926	12	2	6	4	50
ASE_00286	RNaseP_bact_a links to Rfam database...	0.83	0.78	0.89	72	46584	14	5	4	5	20
ASE_00287	RNaseP_bact_a links to Rfam database...	0.70	0.62	0.78	64	54864	24	4	14	6	39
ASE_00292	RNaseP_bact_a links to Rfam database...	0.76	0.67	0.87	93	81703	18	5	9	4	45
ASE_00294	RNaseP_bact_a links to Rfam database...	0.72	0.58	0.90	99	114371	15	4	7	4	72
ASE_00296	RNaseP_bact_a links to Rfam database...	0.75	0.64	0.87	93	91699	19	5	9	5	52
ASE_00297	RNaseP_bact_a links to Rfam database...	0.66	0.57	0.76	56	52901	21	4	14	3	42
ASE_00298	RNaseP_bact_a links to Rfam database...	0.72	0.61	0.85	69	67447	15	3	9	3	44
ASE_00305	RNaseP_bact_b links to Rfam database...	0.80	0.78	0.83	66	54535	26	2	12	12	19
ASE_00318	RNaseP_bact_b links to Rfam database...	0.76	0.69	0.84	81	80103	23	3	13	7	37
ASE_00321	RNaseP_bact_b links to Rfam database...	0.80	0.78	0.81	69	54530	26	3	13	10	19
ASE_00328	RNaseP_bact_b links to Rfam database...	0.79	0.76	0.83	85	72668	27	3	15	9	27
ASE_00332	RNaseP_bact_a links to Rfam database...	0.81	0.70	0.92	97	81705	13	2	6	5	41
ASE_00335	RNaseP_bact_b links to Rfam database...	0.77	0.72	0.83	83	75366	28	3	14	11	33
ASE_00340	RNaseP_bact_a links to Rfam database...	0.79	0.72	0.87	61	45986	16	3	6	7	24
ASE_00342	RNaseP_bact_a links to Rfam database...	0.88	0.85	0.92	98	62374	14	4	5	5	17
ASE_00353	RNaseP_bact_a links to Rfam database...	0.78	0.67	0.91	72	57891	13	2	5	6	35
ASE_00361	RNaseP_bact_a links to Rfam database...	0.69	0.54	0.89	68	75390	14	2	6	6	59
ASE_00362	RNaseP_bact_a links to Rfam database...	0.80	0.74	0.87	67	48128	17	3	7	7	24
ASE_00363	RNaseP_bact_a links to Rfam database...	0.76	0.69	0.84	65	51283	18	1	11	6	29
ASE_00364	RNaseP_bact_a links to Rfam database...	0.76	0.66	0.87	69	54206	16	2	8	6	36
ASE_00366	RNaseP_bact_a links to Rfam database...	0.77	0.69	0.85	68	58573	16	5	7	4	30
ASE_00367	RNaseP_bact_a links to Rfam database...	0.85	0.80	0.91	69	42995	12	2	5	5	17
ASE_00369	RNaseP_bact_a links to Rfam database...	0.78	0.69	0.88	74	55861	15	3	7	5	33
ASE_00370	RNaseP_bact_a links to Rfam database...	0.87	0.83	0.91	70	41828	12	2	5	5	14
ASE_00372	RNaseP_bact_a links to Rfam database...	0.79	0.69	0.90	69	51926	14	1	7	6	31
ASE_00374	RNaseP_bact_a links to Rfam database...	0.86	0.80	0.92	70	44774	10	2	4	4	18
ASE_00376	RNaseP_bact_a links to Rfam database...	0.73	0.64	0.84	67	56873	18	3	10	5	38
ASE_00377	RNaseP_bact_a links to Rfam database...	0.76	0.65	0.88	70	57550	13	3	7	3	37
ASE_00379	RNaseP_bact_a links to Rfam database...	0.88	0.83	0.94	74	45977	11	1	4	6	15
ASE_00382	RNaseP_bact_a links to Rfam database...	0.83	0.81	0.85	68	41825	20	3	9	8	16
ASE_00383	RNaseP_bact_a links to Rfam database...	0.80	0.70	0.90	74	54533	14	3	5	6	31
ASE_00384	RNaseP_bact_a links to Rfam database...	0.83	0.77	0.89	71	48436	14	3	6	5	21
ASE_00386	RNaseP_bact_a links to Rfam database...	0.80	0.72	0.88	69	50325	12	2	7	3	27
ASE_00387	RNaseP_bact_a links to Rfam database...	0.71	0.62	0.81	64	55866	19	2	13	4	40
ASE_00388	RNaseP_bact_a links to Rfam database...	0.79	0.75	0.84	67	45673	20	3	10	7	22
ASE_00390	RNaseP_bact_a links to Rfam database...	0.85	0.82	0.89	70	42116	13	3	6	4	15
ASE_00393	RNaseP_bact_a links to Rfam database...	0.71	0.67	0.77	62	47814	24	3	16	5	31
ASE_00394	RNaseP_bact_a links to Rfam database...	0.82	0.75	0.89	70	46892	15	4	5	6	23
ASE_00395	RNaseP_bact_a links to Rfam database...	0.84	0.81	0.87	68	41538	14	4	6	4	16
ASE_00396	RNaseP_bact_a links to Rfam database...	0.86	0.84	0.89	70	41537	14	4	5	5	13
ASE_00397	RNaseP_bact_a links to Rfam database...	0.79	0.69	0.90	72	54535	14	3	5	6	33
ASE_00398	RNaseP_bact_a links to Rfam database...	0.71	0.62	0.81	64	55866	18	3	12	3	40
ASE_00400	RNaseP_bact_a links to Rfam database...	0.78	0.69	0.89	73	57888	15	3	6	6	33
ASE_00401	RNaseP_bact_a links to Rfam database...	0.66	0.51	0.85	64	76953	16	4	7	5	62
ASE_00402	RNaseP_bact_a links to Rfam database...	0.81	0.79	0.83	67	42405	16	4	10	2	18
ASE_00403	RNaseP_bact_a links to Rfam database...	0.78	0.66	0.92	71	55868	12	1	5	6	36
ASE_00404	RNaseP_bact_a links to Rfam database...	0.85	0.82	0.89	70	42992	16	4	5	7	15
ASE_00406	RNaseP_bact_a links to Rfam database...	0.76	0.70	0.83	66	48748	18	3	11	4	28
ASE_00411	RNaseP_bact_a links to Rfam database...	0.69	0.67	0.71	60	49371	28	7	17	4	29
ASE_00412	RNaseP_bact_a links to Rfam database...	0.61	0.54	0.70	57	58229	28	5	20	3	48
ASE_00413	RNaseP_bact_a links to Rfam database...	0.77	0.77	0.78	62	44472	24	6	11	7	19
ASE_00415	RNaseP_bact_a links to Rfam database...	0.58	0.50	0.69	51	54872	26	2	21	3	52
ASE_00416	RNaseP_bact_a links to Rfam database...	0.74	0.67	0.81	85	77316	25	4	16	5	42
ASE_00419	RNaseP_bact_a links to Rfam database...	0.71	0.62	0.82	64	54868	18	4	10	4	39
ASE_00422	RNaseP_bact_a links to Rfam database...	0.82	0.73	0.92	69	46896	12	0	6	6	25
ASE_00423	RNaseP_bact_a links to Rfam database...	0.78	0.74	0.83	81	56855	22	2	15	5	28
ASE_00427	RNaseP_nuc links to Rfam database...	0.43	0.41	0.44	19	40712	32	9	15	8	27
ASE_00428	RNaseP_bact_a links to Rfam database...	0.76	0.70	0.81	88	76528	24	6	14	4	37
ASE_00430	RNaseP_bact_a links to Rfam database...	0.79	0.69	0.91	67	46897	12	1	6	5	30
ASE_00437	RNaseP_bact_a links to Rfam database...	0.58	0.50	0.67	68	79300	36	3	30	3	67
ASE_00441	RNaseP_bact_a links to Rfam database...	0.70	0.57	0.86	64	64187	14	2	8	4	48
ASE_00448	RNaseP_bact_a links to Rfam database...	0.81	0.79	0.84	88	64156	21	4	13	4	24
ASE_00451	RNaseP_bact_a links to Rfam database...	0.80	0.74	0.88	92	70771	17	4	9	4	33
CRW_00024	SSU_rRNA_archaea links to Rfam database...	0.89	0.88	0.90	404	1085151	82	10	36	36	54
CRW_00034	SSU_rRNA_bacteria links to Rfam database...	0.82	0.79	0.85	374	1141875	86	17	50	19	100
CRW_00048	SSU_rRNA_bacteria links to Rfam database...	0.84	0.83	0.84	390	1170753	91	18	54	19	80
CRW_00054	SSU_rRNA_bacteria links to Rfam database...	0.84	0.84	0.84	381	1107361	95	17	57	21	75
CRW_00059	SSU_rRNA_bacteria links to Rfam database...	0.84	0.82	0.85	390	1172289	85	17	50	18	83
CRW_00061	SSU_rRNA_bacteria links to Rfam database...	0.84	0.82	0.86	390	1181501	85	16	46	23	86
CRW_00068	SSU_rRNA_bacteria links to Rfam database...	0.84	0.84	0.84	383	1108851	87	16	55	16	74
CRW_00096	SSU_rRNA_bacteria links to Rfam database...	0.85	0.83	0.87	388	1178436	81	12	44	25	77
CRW_00140	SSU_rRNA_bacteria links to Rfam database...	0.85	0.84	0.86	388	1135827	85	15	48	22	75
CRW_00141	SSU_rRNA_bacteria links to Rfam database...	0.83	0.81	0.85	387	1201568	90	18	52	20	89
CRW_00150	SSU_rRNA_bacteria links to Rfam database...	0.83	0.82	0.85	381	1152473	90	16	51	23	85
CRW_00152	SSU_rRNA_bacteria links to Rfam database...	0.83	0.81	0.85	381	1179968	89	17	50	22	90
CRW_00166	SSU_rRNA_bacteria links to Rfam database...	0.85	0.83	0.86	387	1190748	90	11	50	29	81
CRW_00173	SSU_rRNA_bacteria links to Rfam database...	0.80	0.80	0.81	354	1082220	107	18	64	25	91
CRW_00177	SSU_rRNA_bacteria links to Rfam database...	0.82	0.81	0.84	382	1178424	101	17	57	27	91
CRW_00196	SSU_rRNA_bacteria links to Rfam database...	0.83	0.81	0.85	387	1207780	91	16	52	23	88
CRW_00230	SSU_rRNA_bacteria links to Rfam database...	0.85	0.82	0.87	394	1198472	81	16	44	21	84
CRW_00245	SSU_rRNA_bacteria links to Rfam database...	0.87	0.86	0.87	390	1105881	79	17	40	22	63
CRW_00248	SSU_rRNA_bacteria links to Rfam database...	0.84	0.82	0.87	396	1218684	87	15	46	26	88
CRW_00250	SSU_rRNA_bacteria links to Rfam database...	0.83	0.80	0.85	382	1198478	88	15	51	22	96
CRW_00256	SSU_rRNA_bacteria links to Rfam database...	0.83	0.81	0.85	379	1192296	87	16	49	22	89
CRW_00270	SSU_rRNA_bacteria links to Rfam database...	0.86	0.86	0.86	390	1111833	85	15	48	22	65
CRW_00271	SSU_rRNA_bacteria links to Rfam database...	0.82	0.81	0.84	375	1122302	98	14	60	24	87
CRW_00273	SSU_rRNA_bacteria links to Rfam database...	0.84	0.84	0.84	375	1085156	94	14	56	24	71
CRW_00275	SSU_rRNA_bacteria links to Rfam database...	0.86	0.86	0.87	391	1114821	86	15	44	27	66
CRW_00277	SSU_rRNA_bacteria links to Rfam database...	0.84	0.84	0.85	379	1110348	89	16	52	21	74
CRW_00278	SSU_rRNA_bacteria links to Rfam database...	0.84	0.82	0.86	371	1129827	85	12	46	27	79
CRW_00279	SSU_rRNA_bacteria links to Rfam database...	0.82	0.81	0.84	377	1179965	98	18	56	24	87
CRW_00280	SSU_rRNA_bacteria links to Rfam database...	0.85	0.85	0.86	384	1117811	93	15	50	28	69
CRW_00281	SSU_rRNA_bacteria links to Rfam database...	0.84	0.82	0.85	381	1144895	89	14	51	24	83
CRW_00284	SSU_rRNA_bacteria links to Rfam database...	0.84	0.82	0.85	376	1131317	94	16	51	27	80
CRW_00285	SSU_rRNA_bacteria links to Rfam database...	0.84	0.83	0.86	380	1117816	91	17	47	27	78
CRW_00289	SSU_rRNA_bacteria links to Rfam database...	0.83	0.81	0.85	386	1189199	95	13	55	27	90
CRW_00298	SSU_rRNA_eukarya links to Rfam database...	0.58	0.54	0.63	267	1620473	212	31	129	52	227
CRW_00301	SSU_rRNA_eukarya links to Rfam database...	0.49	0.46	0.53	240	1762048	265	37	178	50	279
CRW_00306	SSU_rRNA_eukarya links to Rfam database...	0.60	0.57	0.63	263	1445430	208	26	131	51	199
CRW_00310	SSU_rRNA_eukarya links to Rfam database...	0.55	0.51	0.59	264	1805500	238	32	154	52	257
CRW_00326	SSU_rRNA_eukarya links to Rfam database...	0.64	0.60	0.68	299	1627669	193	22	120	51	203
CRW_00330	SSU_rRNA_eukarya links to Rfam database...	0.55	0.51	0.60	262	1988577	231	26	150	55	255
CRW_00332	SSU_rRNA_eukarya links to Rfam database...	0.51	0.48	0.56	227	1769613	237	20	161	56	250
CRW_00333	SSU_rRNA_eukarya links to Rfam database...	0.48	0.43	0.53	220	1892069	260	36	160	64	294
CRW_00345	SSU_rRNA_eukarya links to Rfam database...	0.56	0.53	0.60	262	1586434	224	28	147	49	236
CRW_00346	SSU_rRNA_eukarya links to Rfam database...	0.59	0.55	0.63	278	1584648	213	32	132	49	223
CRW_00348	SSU_rRNA_eukarya links to Rfam database...	0.58	0.54	0.61	272	1615059	225	29	143	53	231
CRW_00358	SSU_rRNA_eukarya links to Rfam database...	0.56	0.53	0.60	269	1674914	228	29	153	46	238
CRW_00366	SSU_rRNA_eukarya links to Rfam database...	0.60	0.56	0.64	269	1579331	210	25	128	57	213
CRW_00370	SSU_rRNA_eukarya links to Rfam database...	0.60	0.57	0.64	288	1640315	211	20	143	48	218
CRW_00371	SSU_rRNA_eukarya links to Rfam database...	0.58	0.55	0.60	275	1611455	232	17	163	52	221
CRW_00372	SSU_rRNA_eukarya links to Rfam database...	0.59	0.55	0.62	275	1625865	212	23	143	46	223
CRW_00379	SSU_rRNA_eukarya links to Rfam database...	0.58	0.52	0.65	277	2126526	213	25	125	63	257
CRW_00386	SSU_rRNA_eukarya links to Rfam database...	0.49	0.46	0.53	236	1750812	258	28	180	50	279
CRW_00403	SSU_rRNA_eukarya links to Rfam database...	0.53	0.52	0.54	240	1606084	283	31	173	79	224
CRW_00411	SSU_rRNA_eukarya links to Rfam database...	0.58	0.54	0.61	269	1615064	222	21	149	52	227
CRW_00414	SSU_rRNA_eukarya links to Rfam database...	0.57	0.53	0.62	263	1665801	210	25	136	49	232
CRW_00466	SSU_rRNA_bacteria links to Rfam database...	0.85	0.85	0.85	388	1116310	90	13	54	23	70
CRW_00548	5S_rRNA links to Rfam database...	0.93	0.87	1.00	33	7348	3	0	0	3	5
CRW_00552	5S_rRNA links to Rfam database...	0.89	0.79	1.00	31	7109	3	0	0	3	8
CRW_00555	5S_rRNA links to Rfam database...	0.85	0.73	1.00	29	7597	3	0	0	3	11
CRW_00567	5S_rRNA links to Rfam database...	0.91	0.83	1.00	33	7470	4	0	0	4	7
CRW_00570	5S_rRNA links to Rfam database...	0.97	0.95	1.00	35	6868	4	0	0	4	2
CRW_00573	5S_rRNA links to Rfam database...	0.88	0.80	0.97	32	7107	3	0	1	2	8
CRW_00589	SSU_rRNA_bacteria links to Rfam database...	0.84	0.82	0.86	367	1094034	98	8	51	39	78
CRW_00590	SSU_rRNA_bacteria links to Rfam database...	0.87	0.84	0.89	381	1119329	87	4	42	41	71
CRW_00591	SSU_rRNA_bacteria links to Rfam database...	0.85	0.84	0.86	373	1098469	103	7	54	42	73
CRW_00598	SSU_rRNA_eukarya links to Rfam database...	0.54	0.51	0.58	250	1665793	234	28	154	52	241
CRW_00758	SSU_rRNA_eukarya links to Rfam database...	0.57	0.54	0.61	263	1640333	241	27	143	71	220
CRW_00759	SSU_rRNA_eukarya links to Rfam database...	0.56	0.53	0.59	254	1636715	232	18	158	56	227
CRW_00760	SSU_rRNA_eukarya links to Rfam database...	0.53	0.49	0.57	239	1638533	247	16	167	64	247
CRW_00772	SSU_rRNA_bacteria links to Rfam database...	0.78	0.76	0.80	306	945618	127	7	69	51	98
CRW_00789	SSU_rRNA_bacteria links to Rfam database...	0.82	0.80	0.85	357	1137365	108	8	56	44	90
CRW_00795	SSU_rRNA_bacteria links to Rfam database...	0.79	0.76	0.82	301	1152552	149	5	63	81	93
CRW_00849	SSU_rRNA_bacteria links to Rfam database...	0.80	0.78	0.82	366	1117816	101	14	64	23	104
CRW_00997	SSU_rRNA_bacteria links to Rfam database...	0.85	0.84	0.85	389	1135822	85	16	51	18	75
CRW_01153	SSU_rRNA_eukarya links to Rfam database...	0.59	0.56	0.63	283	1606076	220	25	144	51	220
CRW_01171	SSU_rRNA_eukarya links to Rfam database...	0.52	0.48	0.56	245	1593566	240	31	163	46	261
CRW_01300	SSU_rRNA_eukarya links to Rfam database...	0.60	0.55	0.67	283	1693295	193	17	125	51	232
CRW_01484	5S_rRNA links to Rfam database...	0.92	0.87	0.97	34	7468	3	0	1	2	5
CRW_01485	5S_rRNA links to Rfam database...	0.92	0.87	0.97	34	7468	5	0	1	4	5
CRW_01487	5S_rRNA links to Rfam database...	0.90	0.83	0.97	34	7468	2	0	1	1	7
CRW_01489	5S_rRNA links to Rfam database...	0.93	0.87	1.00	34	7469	3	0	0	3	5
CRW_01491	5S_rRNA links to Rfam database...	0.90	0.81	1.00	35	8350	1	0	0	1	8
CRW_01492	5S_rRNA links to Rfam database...	0.86	0.79	0.94	33	7591	3	0	2	1	9
CRW_01494	5S_rRNA links to Rfam database...	0.88	0.80	0.97	32	7107	3	0	1	2	8
CRW_01497	5S_rRNA links to Rfam database...	0.88	0.78	1.00	31	7109	2	0	0	2	9
CRW_01498	5S_rRNA links to Rfam database...	0.90	0.81	1.00	35	8093	1	0	0	1	8
CRW_01499	5S_rRNA links to Rfam database...	0.72	0.66	0.79	27	7967	7	0	7	0	14
CRW_01500	5S_rRNA links to Rfam database...	0.93	0.87	1.00	33	7717	5	0	0	5	5
CRW_01501	5S_rRNA links to Rfam database...	0.82	0.76	0.89	34	8477	5	0	4	1	11
CRW_01508	5S_rRNA links to Rfam database...	0.87	0.81	0.94	34	7965	4	0	2	2	8
CRW_01532	5S_rRNA links to Rfam database...	0.97	0.95	1.00	35	7105	4	0	0	4	2
CRW_01533	5S_rRNA links to Rfam database...	0.99	0.97	1.00	36	7104	3	0	0	3	1
CRW_01534	5S_rRNA links to Rfam database...	0.99	0.97	1.00	36	7104	3	0	0	3	1
CRW_01535	5S_rRNA links to Rfam database...	0.99	0.97	1.00	36	7104	3	0	0	3	1
CRW_01536	5S_rRNA links to Rfam database...	0.99	0.97	1.00	36	6985	2	0	0	2	1
CRW_01537	5S_rRNA links to Rfam database...	0.99	0.97	1.00	36	7104	3	0	0	3	1
CRW_01539	5S_rRNA links to Rfam database...	0.99	0.97	1.00	36	7104	4	0	0	4	1
CRW_01540	5S_rRNA links to Rfam database...	0.99	0.97	1.00	36	7104	3	0	0	3	1
CRW_01541	5S_rRNA links to Rfam database...	0.83	0.81	0.86	30	7105	9	0	5	4	7
CRW_01542	5S_rRNA links to Rfam database...	0.99	0.97	1.00	36	7104	3	0	0	3	1
CRW_01544	5S_rRNA links to Rfam database...	0.97	0.95	1.00	35	7105	3	0	0	3	2
CRW_01548	5S_rRNA links to Rfam database...	0.99	0.97	1.00	36	6985	4	0	0	4	1
CRW_01555	5S_rRNA links to Rfam database...	0.99	0.97	1.00	36	9009	2	0	0	2	1
CRW_01556	5S_rRNA links to Rfam database...	0.99	0.97	1.00	36	7104	3	0	0	3	1
CRW_01557	5S_rRNA links to Rfam database...	0.97	0.95	1.00	35	7105	4	0	0	4	2
CRW_01559	5S_rRNA links to Rfam database...	0.99	0.97	1.00	36	7224	4	0	0	4	1
CRW_01562	5S_rRNA links to Rfam database...	0.89	0.86	0.91	32	7105	6	0	3	3	5
CRW_01563	5S_rRNA links to Rfam database...	0.84	0.84	0.84	31	6866	10	0	6	4	6
CRW_01566	5S_rRNA links to Rfam database...	0.89	0.84	0.94	31	7107	5	0	2	3	6
CRW_01568	5S_rRNA links to Rfam database...	0.99	0.97	1.00	36	7104	2	0	0	2	1
CRW_01569	5S_rRNA links to Rfam database...	0.96	0.95	0.97	35	7104	4	0	1	3	2
CRW_01570	5S_rRNA links to Rfam database...	0.99	0.97	1.00	36	7104	2	0	0	2	1
CRW_01572	5S_rRNA links to Rfam database...	0.84	0.84	0.84	31	6984	9	0	6	3	6
CRW_01573	5S_rRNA links to Rfam database...	0.99	0.97	1.00	36	7224	2	0	0	2	1
CRW_01578	5S_rRNA links to Rfam database...	0.99	0.97	1.00	36	7104	3	0	0	3	1
CRW_01580	5S_rRNA links to Rfam database...	0.93	0.92	0.94	34	7104	4	0	2	2	3
CRW_01581	5S_rRNA links to Rfam database...	0.99	0.97	1.00	36	7104	2	0	0	2	1
CRW_01583	5S_rRNA links to Rfam database...	0.99	0.97	1.00	36	7104	2	0	0	2	1
CRW_01584	5S_rRNA links to Rfam database...	0.99	0.97	1.00	36	7104	2	0	0	2	1
CRW_01590	5S_rRNA links to Rfam database...	0.92	0.86	0.97	32	7107	4	0	1	3	5
CRW_01593	5S_rRNA links to Rfam database...	0.93	0.92	0.94	34	7104	4	0	2	2	3
CRW_01595	5S_rRNA links to Rfam database...	0.99	0.97	1.00	36	8479	3	0	0	3	1
CRW_01599	5S_rRNA links to Rfam database...	0.99	0.97	1.00	36	7104	3	0	0	3	1
CRW_01603	5S_rRNA links to Rfam database...	0.89	0.84	0.94	31	7107	5	0	2	3	6
CRW_01605	5S_rRNA links to Rfam database...	0.99	0.97	1.00	36	7104	3	0	0	3	1
CRW_01606	5S_rRNA links to Rfam database...	0.94	0.92	0.97	34	7105	4	0	1	3	3
CRW_01608	5S_rRNA links to Rfam database...	0.99	0.97	1.00	36	8349	2	0	0	2	1
CRW_01616	5S_rRNA links to Rfam database...	0.99	0.97	1.00	36	7104	2	0	0	2	1
CRW_01617	5S_rRNA links to Rfam database...	0.99	0.97	1.00	36	7104	3	0	0	3	1
CRW_01620	5S_rRNA links to Rfam database...	0.99	0.97	1.00	36	6985	3	0	0	3	1
CRW_01621	5S_rRNA links to Rfam database...	0.97	0.95	1.00	35	7105	4	0	0	4	2
CRW_01623	5S_rRNA links to Rfam database...	0.97	0.97	0.97	36	7103	3	0	1	2	1
CRW_01625	5S_rRNA links to Rfam database...	0.97	0.95	1.00	35	7105	3	0	0	3	2
PDB_00012	mir-TAR links to Rfam database...	1.00	1.00	1.00	7	399	2	0	0	2	0
PDB_00070	tRNA links to Rfam database...	0.93	0.88	1.00	21	2829	0	0	0	0	3
PDB_00213	Gammaretro_CES links to Rfam database...	0.85	0.73	1.00	30	5020	0	0	0	0	11
PDB_00229	tRNA links to Rfam database...	0.96	0.91	1.00	21	2754	0	0	0	0	2
PDB_00327	tRNA links to Rfam database...	0.98	0.96	1.00	22	3059	0	0	0	0	1
PDB_00362	tRNA links to Rfam database...	0.98	0.95	1.00	21	2829	0	0	0	0	1
PDB_00402	tRNA links to Rfam database...	0.96	0.91	1.00	21	2754	0	0	0	0	2
PDB_00431	tRNA links to Rfam database...	0.97	0.95	1.00	19	2192	1	0	0	1	1
PDB_00474	tRNA links to Rfam database...	0.96	0.91	1.00	21	2680	0	0	0	0	2
PDB_00553	mir-TAR links to Rfam database...	1.00	1.00	1.00	11	454	0	0	0	0	0
PDB_00571	tRNA links to Rfam database...	0.87	0.80	0.95	20	3300	1	1	0	0	5
PDB_00667	tRNA links to Rfam database...	0.98	0.95	1.00	21	2829	0	0	0	0	1
PDB_00703	SSU_rRNA_bacteria links to Rfam database...	0.78	0.72	0.84	355	1073423	101	6	61	34	140
PDB_00741	Entero_5_CRE links to Rfam database...	0.84	0.71	1.00	12	691	0	0	0	0	5
PDB_00810	s2m links to Rfam database...	0.84	0.71	1.00	12	1069	0	0	0	0	5
PDB_00828	Purine links to Rfam database...	0.88	0.78	1.00	21	2464	2	0	0	2	6
PDB_00829	Purine links to Rfam database...	0.86	0.75	1.00	18	2260	2	0	0	2	6
PDB_00854	SSU_rRNA_bacteria links to Rfam database...	0.75	0.68	0.84	363	1500344	118	10	61	47	172
PDB_00876	HIV_FE links to Rfam database...	0.48	0.45	0.53	9	973	8	0	8	0	11
PDB_01002	tRNA links to Rfam database...	0.95	0.90	1.00	19	2756	2	0	0	2	2
PDB_01020	Purine links to Rfam database...	0.88	0.78	1.00	18	2260	3	0	0	3	5
PDB_01050	UnaL2 links to Rfam database...	0.78	0.62	1.00	8	622	2	0	0	2	5
PDB_01053	tRNA links to Rfam database...	1.00	1.00	1.00	16	1362	0	0	0	0	0
PDB_01073	SAM links to Rfam database...	0.79	0.71	0.89	24	4344	4	2	1	1	10
PDB_01088	SSU_rRNA_bacteria links to Rfam database...	0.74	0.65	0.83	357	1471042	115	5	66	44	190
PDB_01103	SSU_rRNA_bacteria links to Rfam database...	0.75	0.66	0.85	373	1606088	99	8	59	32	189
PDB_01105	SSU_rRNA_bacteria links to Rfam database...	0.75	0.68	0.84	366	1433533	107	4	68	35	174
PDB_01114	TPP links to Rfam database...	0.84	0.74	0.95	20	2829	1	0	1	0	7
PDB_01120	SSU_rRNA_bacteria links to Rfam database...	0.78	0.72	0.85	378	1204681	101	9	60	32	149
PDB_01152	HIV_FS2 links to Rfam database...	0.80	0.71	0.91	10	550	1	0	1	0	4
PDB_01236	ykoK links to Rfam database...	0.90	0.81	1.00	44	11584	4	0	0	4	10
PDB_01273	SSU_rRNA_bacteria links to Rfam database...	0.78	0.73	0.84	358	1117834	110	9	59	42	133
RFA_00389	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	2	0	0	2	1
RFA_00390	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	2	0	0	2	1
RFA_00391	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	2	0	0	2	1
RFA_00396	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00402	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00409	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	2	0	0	2	1
RFA_00416	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1471	2	0	0	2	1
RFA_00433	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00434	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00436	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	1	0	0	1	1
RFA_00440	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1470	2	0	0	2	0
RFA_00442	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00444	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1526	3	0	0	3	1
RFA_00583	Y_RNA links to Rfam database...	0.93	0.93	0.93	14	4935	4	0	1	3	1
RFA_00584	Y_RNA links to Rfam database...	0.93	0.93	0.93	14	2911	10	0	1	9	1
RFA_00585	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4836	5	0	0	5	0
RFA_00586	Y_RNA links to Rfam database...	0.97	0.93	1.00	14	3902	2	0	0	2	1
RFA_00587	Y_RNA links to Rfam database...	0.93	0.93	0.93	14	4836	9	0	1	8	1
RFA_00588	Y_RNA links to Rfam database...	0.93	0.93	0.93	14	4545	9	0	1	8	1
RFA_00589	Y_RNA links to Rfam database...	0.97	0.93	1.00	14	4357	9	0	0	9	1
RFA_00594	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	2760	8	0	0	8	0
RFA_00596	Y_RNA links to Rfam database...	0.93	0.87	1.00	13	5982	10	0	0	10	2
RFA_00599	Telomerase-vert links to Rfam database...	0.86	0.82	0.90	91	101374	19	3	7	9	20
RFA_00601	Telomerase-vert links to Rfam database...	0.80	0.74	0.88	84	99139	25	3	9	13	30
RFA_00602	Telomerase-vert links to Rfam database...	0.79	0.72	0.87	84	101378	22	2	11	9	32
RFA_00658	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	1126	3	0	2	1	14
RFA_00664	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	986	4	0	4	0	14
RFA_00667	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	985	5	0	5	0	14
RFA_00668	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	986	4	0	4	0	14
RFA_00672	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	898	5	0	5	0	13
RFA_00673	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	1123	5	0	5	0	14
RFA_00674	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	1124	4	0	4	0	14
RFA_00675	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	985	5	0	5	0	14
RFA_00677	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	984	6	0	6	0	14
RFA_00678	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	941	5	0	5	0	14
RFA_00680	Hammerhead_1 links to Rfam database...	0.15	0.07	0.33	1	1125	3	0	2	1	13
RFA_00704	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	988	3	0	2	1	14
RFA_00707	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	1029	6	0	6	0	14
RFA_00715	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	942	4	0	4	0	14
RFA_00717	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	902	1	0	1	0	14
RFA_00730	s2m links to Rfam database...	1.00	1.00	1.00	12	891	1	0	0	1	0
RFA_00731	s2m links to Rfam database...	1.00	1.00	1.00	12	891	0	0	0	0	0
RFA_00733	s2m links to Rfam database...	1.00	1.00	1.00	12	891	1	0	0	1	0
RFA_00734	s2m links to Rfam database...	1.00	1.00	1.00	12	891	1	0	0	1	0
RFA_00736	s2m links to Rfam database...	1.00	1.00	1.00	12	891	0	0	0	0	0
RFA_00737	s2m links to Rfam database...	1.00	1.00	1.00	12	891	1	0	0	1	0
RFA_00745	s2m links to Rfam database...	1.00	1.00	1.00	12	934	1	0	0	1	0
RFA_00749	s2m links to Rfam database...	1.00	1.00	1.00	12	891	1	0	0	1	0
RFA_00758	s2m links to Rfam database...	1.00	1.00	1.00	12	891	1	0	0	1	0
RFA_00762	s2m links to Rfam database...	1.00	1.00	1.00	12	891	1	0	0	1	0
RFA_00763	s2m links to Rfam database...	1.00	1.00	1.00	12	891	1	0	0	1	0
RFA_00764	s2m links to Rfam database...	1.00	1.00	1.00	12	891	1	0	0	1	0
RFA_00765	s2m links to Rfam database...	1.00	1.00	1.00	12	891	0	0	0	0	0
RFA_00786	Gammaretro_CES links to Rfam database...	0.97	0.94	1.00	30	5020	0	0	0	0	2
RFA_00791	Gammaretro_CES links to Rfam database...	0.97	0.94	1.00	30	5121	0	0	0	0	2
RFA_00792	Gammaretro_CES links to Rfam database...	0.94	0.91	0.97	29	5020	1	0	1	0	3
RFA_00801	Gammaretro_CES links to Rfam database...	0.97	0.94	1.00	30	5020	0	0	0	0	2
SPR_00007	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00009	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	1	0	0	1	0
SPR_00010	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00012	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	1	0	0	1	0
SPR_00013	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	1	0	0	1	0
SPR_00016	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00017	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00025	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	1	0	0	1	0
SPR_00026	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	1	0	0	1	0
SPR_00027	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00036	tRNA links to Rfam database...	1.00	1.00	1.00	20	2755	1	0	0	1	0
SPR_00045	tRNA links to Rfam database...	0.98	0.95	1.00	21	2829	0	0	0	0	1
SPR_00064	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00065	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00066	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00068	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00070	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00074	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	1	0	0	1	0
SPR_00079	tRNA links to Rfam database...	0.97	0.95	1.00	18	2467	1	0	0	1	1
SPR_00086	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00087	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	1	0	0	1	0
SPR_00088	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	1	0	0	1	0
SPR_00089	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	1	0	0	1	0
SPR_00090	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	1	0	0	1	0
SPR_00091	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	1	0	0	1	0
SPR_00095	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00111	tRNA links to Rfam database...	1.00	1.00	1.00	21	2680	0	0	0	0	0
SPR_00112	tRNA links to Rfam database...	1.00	1.00	1.00	21	2680	0	0	0	0	0
SPR_00115	tRNA links to Rfam database...	1.00	1.00	1.00	21	2680	0	0	0	0	0
SPR_00117	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	1	0	0	1	0
SPR_00139	tRNA links to Rfam database...	0.95	0.90	1.00	19	2907	1	0	0	1	2
SPR_00153	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00155	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00156	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00176	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	1	0	0	1	0
SPR_00177	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00178	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00191	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00200	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00224	tRNA links to Rfam database...	1.00	1.00	1.00	20	3721	4	0	0	4	0
SPR_00271	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00273	tRNA links to Rfam database...	0.95	0.95	0.95	20	2829	1	0	1	0	1
SPR_00276	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00277	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00294	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00295	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	0	0	0	0	0
SPR_00314	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00315	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00317	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	1	0	0	1	0
SPR_00318	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00321	tRNA links to Rfam database...	1.00	1.00	1.00	21	2982	0	0	0	0	0
SPR_00333	tRNA links to Rfam database...	0.98	0.95	1.00	20	2755	0	0	0	0	1
SPR_00352	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00353	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00357	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00358	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	1	0	0	1	0
SPR_00370	tRNA links to Rfam database...	0.95	0.95	0.95	20	2754	1	0	1	0	1
SPR_00386	tRNA links to Rfam database...	1.00	1.00	1.00	20	4166	0	0	0	0	0
SPR_00414	tRNA links to Rfam database...	1.00	1.00	1.00	21	3549	3	0	0	3	0
SPR_00415	tRNA links to Rfam database...	1.00	1.00	1.00	21	3549	4	0	0	4	0
SPR_00417	tRNA links to Rfam database...	0.98	0.95	1.00	21	3549	3	0	0	3	1
SPR_00418	tRNA links to Rfam database...	0.98	0.95	1.00	21	3549	3	0	0	3	1
SPR_00434	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00435	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00436	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00437	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	0	0	0	0	0
SPR_00438	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	0	0	0	0	0
SPR_00452	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00455	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00456	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00476	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	0	0	0	0	0
SPR_00479	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00482	tRNA links to Rfam database...	1.00	1.00	1.00	21	2680	0	0	0	0	0
SPR_00483	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00487	tRNA links to Rfam database...	0.88	0.86	0.90	19	2680	2	0	2	0	3
SPR_00493	tRNA links to Rfam database...	0.98	0.95	1.00	21	2754	0	0	0	0	1
SPR_00496	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	0	0	0	0	0
SPR_00497	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	0	0	0	0	0
SPR_00502	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00504	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	1	0	0	1	0
SPR_00505	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	1	0	0	1	0
SPR_00506	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	1	0	0	1	0
SPR_00509	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00512	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	1	0	0	1	0
SPR_00513	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	1	0	0	1	0
SPR_00518	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	1	0	0	1	0
SPR_00548	tRNA links to Rfam database...	0.98	0.95	1.00	20	3383	1	0	0	1	1
SPR_00557	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00561	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00590	tRNA links to Rfam database...	1.00	1.00	1.00	20	2983	2	0	0	2	0
SPR_00593	tRNA links to Rfam database...	1.00	1.00	1.00	19	2756	2	0	0	2	0
SPR_00595	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	0	0	0	0	0
SPR_00598	tRNA links to Rfam database...	1.00	1.00	1.00	21	2982	0	0	0	0	0
SPR_00610	tRNA links to Rfam database...	0.98	0.95	1.00	20	2536	0	0	0	0	1
SPR_00620	tRNA links to Rfam database...	0.98	0.95	1.00	20	2983	0	0	0	0	1
SPR_00721	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00722	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	2	0	0	2	0
SPR_00758	tRNA links to Rfam database...	1.00	1.00	1.00	21	2982	1	0	0	1	0
SPR_00760	tRNA links to Rfam database...	1.00	1.00	1.00	21	3549	0	0	0	0	0
SPR_00777	tRNA links to Rfam database...	1.00	1.00	1.00	20	2608	1	0	0	1	0
SPR_00867	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00868	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00943	tRNA links to Rfam database...	1.00	1.00	1.00	20	2536	0	0	0	0	0
SPR_00957	tRNA links to Rfam database...	1.00	1.00	1.00	21	2982	1	0	0	1	0
SPR_01040	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	0	0	0	0	0
SPR_01088	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_01095	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_01106	tRNA links to Rfam database...	1.00	1.00	1.00	21	2535	0	0	0	0	0
SPR_01117	tRNA links to Rfam database...	1.00	1.00	1.00	21	2982	0	0	0	0	0
SPR_01157	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	1	0	0	1	0
SRP_00006	Metazoa_SRP links to Rfam database...	0.96	0.94	0.99	95	45657	6	0	1	5	6
SRP_00008	Bacteria_small_SRP links to Rfam database...	0.49	0.24	1.00	6	2920	0	0	0	0	19
SRP_00011	Plant_SRP links to Rfam database...	0.83	0.80	0.86	83	46263	22	0	14	8	21
SRP_00015	Plant_SRP links to Rfam database...	0.84	0.81	0.88	80	46269	23	0	11	12	19
SRP_00020	Bacteria_small_SRP links to Rfam database...	0.58	0.33	1.00	11	5554	0	0	0	0	22
SRP_00024	Bacteria_large_SRP links to Rfam database...	0.47	0.28	0.80	24	37645	6	0	6	0	63
SRP_00026	Bacteria_large_SRP links to Rfam database...	0.55	0.33	0.91	29	36824	4	0	3	1	59
SRP_00027	Bacteria_large_SRP links to Rfam database...	0.56	0.34	0.91	30	37095	3	0	3	0	57
SRP_00030	Bacteria_large_SRP links to Rfam database...	0.56	0.34	0.91	30	36823	3	0	3	0	58
SRP_00031	Bacteria_large_SRP links to Rfam database...	0.54	0.33	0.91	29	36283	4	0	3	1	60
SRP_00037	Bacteria_large_SRP links to Rfam database...	0.56	0.34	0.91	30	36552	3	0	3	0	57
SRP_00038	Bacteria_small_SRP links to Rfam database...	0.46	0.21	1.00	7	5043	0	0	0	0	26
SRP_00042	Bacteria_small_SRP links to Rfam database...	0.85	0.80	0.91	20	3983	4	1	1	2	5
SRP_00044	Bacteria_small_SRP links to Rfam database...	0.47	0.22	1.00	7	6098	0	0	0	0	25
SRP_00046	Bacteria_small_SRP links to Rfam database...	0.47	0.22	1.00	7	4746	0	0	0	0	25
SRP_00050	Metazoa_SRP links to Rfam database...	0.99	0.99	1.00	98	44752	6	0	0	6	1
SRP_00051	Bacteria_small_SRP links to Rfam database...	0.48	0.23	1.00	7	5453	0	0	0	0	23
SRP_00054	Bacteria_small_SRP links to Rfam database...	0.47	0.22	1.00	7	5558	0	0	0	0	25
SRP_00057	Bacteria_small_SRP links to Rfam database...	0.45	0.20	1.00	7	6321	0	0	0	0	28
SRP_00058	Bacteria_small_SRP links to Rfam database...	0.54	0.29	1.00	10	5768	0	0	0	0	24
SRP_00066	Metazoa_SRP links to Rfam database...	0.82	0.76	0.88	76	45365	18	0	10	8	24
SRP_00072	Bacteria_small_SRP links to Rfam database...	0.49	0.24	1.00	7	6321	0	0	0	0	22
SRP_00074	Bacteria_small_SRP links to Rfam database...	0.49	0.24	1.00	7	6548	0	0	0	0	22
SRP_00075	Bacteria_small_SRP links to Rfam database...	0.45	0.21	1.00	7	5558	0	0	0	0	27
SRP_00077	Bacteria_small_SRP links to Rfam database...	0.43	0.19	1.00	7	6663	0	0	0	0	30
SRP_00081	Bacteria_small_SRP links to Rfam database...	0.47	0.23	1.00	7	5558	0	0	0	0	24
SRP_00084	Bacteria_small_SRP links to Rfam database...	0.45	0.21	1.00	7	5453	0	0	0	0	27
SRP_00086	Metazoa_SRP links to Rfam database...	0.94	0.90	0.99	90	44162	5	0	1	4	10
SRP_00088	Bacteria_large_SRP links to Rfam database...	0.49	0.29	0.84	26	34160	6	0	5	1	63
SRP_00089	Bacteria_large_SRP links to Rfam database...	0.54	0.32	0.91	29	35746	4	0	3	1	61
SRP_00090	Bacteria_large_SRP links to Rfam database...	0.54	0.32	0.91	29	35479	4	0	3	1	61
SRP_00094	Bacteria_small_SRP links to Rfam database...	0.54	0.33	0.89	8	4086	1	1	0	0	16
SRP_00095	Bacteria_small_SRP links to Rfam database...	0.49	0.24	1.00	6	3999	0	0	0	0	19
SRP_00098	Bacteria_small_SRP links to Rfam database...	0.40	0.16	1.00	6	6435	0	0	0	0	31
SRP_00102	Metazoa_SRP links to Rfam database...	0.79	0.76	0.82	77	44457	21	1	16	4	24
SRP_00103	Metazoa_SRP links to Rfam database...	0.84	0.77	0.92	79	45365	12	0	7	5	23
SRP_00105	Bacteria_small_SRP links to Rfam database...	0.45	0.21	1.00	7	5558	0	0	0	0	27
SRP_00107	Bacteria_small_SRP links to Rfam database...	0.56	0.32	1.00	6	3649	1	0	0	1	13
SRP_00121	Bacteria_small_SRP links to Rfam database...	0.53	0.28	1.00	7	4271	0	0	0	0	18
SRP_00128	Bacteria_small_SRP links to Rfam database...	0.44	0.19	1.00	7	6779	0	0	0	0	29
SRP_00132	Bacteria_small_SRP links to Rfam database...	0.49	0.24	1.00	7	4844	0	0	0	0	22
SRP_00134	Bacteria_large_SRP links to Rfam database...	0.41	0.28	0.62	8	5982	6	0	5	1	21
SRP_00141	Bacteria_small_SRP links to Rfam database...	0.38	0.15	1.00	6	6322	1	0	0	1	35
SRP_00152	Plant_SRP links to Rfam database...	0.88	0.85	0.91	88	45656	20	0	9	11	15
SRP_00161	Bacteria_small_SRP links to Rfam database...	0.56	0.32	1.00	7	2843	0	0	0	0	15
SRP_00162	Bacteria_small_SRP links to Rfam database...	0.55	0.30	1.00	7	2919	0	0	0	0	16
SRP_00163	Bacteria_small_SRP links to Rfam database...	0.52	0.27	1.00	7	3479	0	0	0	0	19
SRP_00164	Bacteria_small_SRP links to Rfam database...	0.45	0.20	1.00	7	6896	0	0	0	0	28
SRP_00170	Bacteria_small_SRP links to Rfam database...	0.83	0.76	0.90	19	4074	4	1	1	2	6
SRP_00171	Metazoa_SRP links to Rfam database...	0.89	0.88	0.91	77	45366	24	0	8	16	11
SRP_00174	Bacteria_large_SRP links to Rfam database...	0.56	0.35	0.91	30	38748	3	0	3	0	56
SRP_00178	Plant_SRP links to Rfam database...	0.88	0.84	0.92	86	45660	19	0	7	12	16
SRP_00179	Plant_SRP links to Rfam database...	0.89	0.84	0.94	88	45962	16	0	6	10	17
SRP_00181	Plant_SRP links to Rfam database...	0.82	0.77	0.88	79	45966	20	0	11	9	23
SRP_00182	Plant_SRP links to Rfam database...	0.92	0.90	0.94	91	45959	15	0	6	9	10
SRP_00184	Plant_SRP links to Rfam database...	0.86	0.83	0.88	83	45962	24	0	11	13	17
SRP_00188	Plant_SRP links to Rfam database...	0.87	0.85	0.89	67	31050	16	0	8	8	12
SRP_00194	Bacteria_small_SRP links to Rfam database...	0.53	0.29	1.00	6	3234	0	0	0	0	15
SRP_00200	Bacteria_small_SRP links to Rfam database...	0.41	0.17	1.00	6	6897	1	0	0	1	30
SRP_00209	Bacteria_small_SRP links to Rfam database...	0.61	0.41	0.92	11	4644	1	1	0	0	16
SRP_00213	Bacteria_small_SRP links to Rfam database...	0.56	0.32	1.00	8	4178	0	0	0	0	17
SRP_00215	Bacteria_small_SRP links to Rfam database...	0.53	0.28	1.00	7	3233	0	0	0	0	18
SRP_00227	Bacteria_small_SRP links to Rfam database...	0.47	0.23	1.00	7	5144	0	0	0	0	24
SRP_00228	Metazoa_SRP links to Rfam database...	0.93	0.89	0.98	85	45364	13	0	2	11	10
SRP_00231	Bacteria_small_SRP links to Rfam database...	0.42	0.21	0.88	7	5452	1	0	1	0	27
SRP_00233	Bacteria_small_SRP links to Rfam database...	0.46	0.21	1.00	7	5144	0	0	0	0	26
SRP_00243	Bacteria_small_SRP links to Rfam database...	0.47	0.23	1.00	7	5144	0	0	0	0	24
SRP_00244	Bacteria_small_SRP links to Rfam database...	0.39	0.15	1.00	6	6897	1	0	0	1	33
SRP_00250	Bacteria_small_SRP links to Rfam database...	0.44	0.19	1.00	7	6779	0	0	0	0	29
SRP_00251	Bacteria_small_SRP links to Rfam database...	0.41	0.17	1.00	6	7015	1	0	0	1	30
SRP_00266	Bacteria_small_SRP links to Rfam database...	0.49	0.24	1.00	7	4649	0	0	0	0	22
SRP_00268	Bacteria_small_SRP links to Rfam database...	0.84	0.78	0.91	21	4163	3	1	1	1	6
SRP_00269	Bacteria_small_SRP links to Rfam database...	0.46	0.21	1.00	7	5043	0	0	0	0	26
SRP_00270	Bacteria_small_SRP links to Rfam database...	0.44	0.19	1.00	6	4650	1	0	0	1	25
SRP_00271	Bacteria_small_SRP links to Rfam database...	0.54	0.29	1.00	7	3233	0	0	0	0	17
SRP_00273	Bacteria_small_SRP links to Rfam database...	0.52	0.28	1.00	11	6775	0	0	0	0	29
SRP_00274	Bacteria_small_SRP links to Rfam database...	0.43	0.18	1.00	7	6896	0	0	0	0	31
SRP_00295	Bacteria_small_SRP links to Rfam database...	0.40	0.16	1.00	6	6897	1	0	0	1	32
SRP_00303	Bacteria_small_SRP links to Rfam database...	0.43	0.19	1.00	6	6664	1	0	0	1	26
SRP_00308	Bacteria_large_SRP links to Rfam database...	0.34	0.14	0.86	12	36301	2	0	2	0	76
SRP_00310	Bacteria_small_SRP links to Rfam database...	0.55	0.30	1.00	7	2919	0	0	0	0	16
SRP_00312	Bacteria_small_SRP links to Rfam database...	0.82	0.74	0.91	20	4164	3	1	1	1	7
SRP_00315	Bacteria_small_SRP links to Rfam database...	0.66	0.43	1.00	10	2916	0	0	0	0	13
SRP_00317	Metazoa_SRP links to Rfam database...	0.96	0.94	0.98	92	45056	9	0	2	7	6
SRP_00318	Bacteria_small_SRP links to Rfam database...	0.55	0.30	1.00	7	2996	0	0	0	0	16
SRP_00325	Bacteria_small_SRP links to Rfam database...	0.46	0.21	1.00	7	4364	0	0	0	0	26
SRP_00326	Bacteria_small_SRP links to Rfam database...	0.44	0.19	1.00	6	5044	1	0	0	1	25
SRP_00333	Bacteria_small_SRP links to Rfam database...	0.45	0.21	1.00	7	5144	0	0	0	0	27
SRP_00337	Bacteria_large_SRP links to Rfam database...	0.55	0.33	0.91	30	35478	4	0	3	1	61
SRP_00338	Bacteria_small_SRP links to Rfam database...	0.44	0.19	1.00	7	5453	0	0	0	0	29
SRP_00341	Bacteria_small_SRP links to Rfam database...	0.47	0.23	1.00	7	4746	0	0	0	0	24
SRP_00342	Bacteria_small_SRP links to Rfam database...	0.49	0.24	1.00	6	3999	1	0	0	1	19
SRP_00347	Metazoa_SRP links to Rfam database...	0.91	0.86	0.97	83	46579	15	0	3	12	13
SRP_00350	Bacteria_small_SRP links to Rfam database...	0.86	0.81	0.92	22	3892	2	1	1	0	5
SRP_00356	Bacteria_small_SRP links to Rfam database...	0.48	0.23	1.00	7	5043	0	0	0	0	23
SRP_00357	Bacteria_small_SRP links to Rfam database...	0.44	0.19	1.00	7	5349	0	0	0	0	29
SRP_00358	Bacteria_small_SRP links to Rfam database...	0.45	0.20	1.00	7	6321	0	0	0	0	28
SRP_00367	Bacteria_small_SRP links to Rfam database...	0.41	0.17	1.00	6	6780	1	0	0	1	29
SRP_00368	Metazoa_SRP links to Rfam database...	0.83	0.81	0.86	79	43864	20	0	13	7	19
SRP_00369	Bacteria_small_SRP links to Rfam database...	0.41	0.17	1.00	6	5772	1	0	0	1	29
SRP_00383	Bacteria_small_SRP links to Rfam database...	0.54	0.29	1.00	7	3233	0	0	0	0	17
TMR_00017	tmRNA links to Rfam database...	0.74	0.61	0.90	62	67092	15	2	5	8	40
TMR_00018	tmRNA links to Rfam database...	0.60	0.53	0.67	49	64547	31	9	15	7	43
TMR_00038	tmRNA links to Rfam database...	0.61	0.54	0.70	59	71169	31	5	20	6	51
TMR_00042	tmRNA links to Rfam database...	0.63	0.53	0.74	52	62765	19	5	13	1	46
TMR_00046	tmRNA links to Rfam database...	0.42	0.38	0.47	36	62759	42	7	33	2	60
TMR_00048	tmRNA links to Rfam database...	0.61	0.54	0.69	51	64906	30	8	15	7	44
TMR_00080	tmRNA links to Rfam database...	0.66	0.60	0.73	58	70420	26	10	12	4	38
TMR_00082	tmRNA links to Rfam database...	0.59	0.49	0.70	47	67829	27	7	13	7	49
TMR_00123	tmRNA links to Rfam database...	0.68	0.54	0.85	55	66365	18	3	7	8	46
TMR_00137	tmRNA links to Rfam database...	0.68	0.63	0.74	56	60999	29	8	12	9	33
TMR_00142	tmRNA links to Rfam database...	0.46	0.42	0.51	43	70792	44	12	29	3	59
TMR_00207	tmRNA links to Rfam database...	0.66	0.52	0.84	54	72326	22	2	8	12	49
TMR_00257	tmRNA links to Rfam database...	0.73	0.61	0.87	60	67092	18	4	5	9	38
TMR_00271	tmRNA links to Rfam database...	0.58	0.49	0.69	45	64196	23	9	11	3	46
TMR_00332	tmRNA links to Rfam database...	0.71	0.61	0.83	60	67089	21	3	9	9	39
TMR_00366	tmRNA links to Rfam database...	0.48	0.45	0.52	45	67810	45	10	31	4	55
TMR_00378	tmRNA links to Rfam database...	0.45	0.41	0.48	40	67813	48	10	33	5	57
TMR_00399	tmRNA links to Rfam database...	0.66	0.62	0.71	58	64898	36	6	18	12	36
TMR_00404	tmRNA links to Rfam database...	0.52	0.46	0.60	42	67458	32	11	17	4	50
TMR_00427	tmRNA links to Rfam database...	0.60	0.49	0.74	48	67463	20	9	8	3	49
TMR_00443	tmRNA links to Rfam database...	0.81	0.71	0.93	74	67081	13	2	4	7	30
TMR_00451	tmRNA links to Rfam database...	0.59	0.54	0.64	48	63471	38	14	13	11	41
TMR_00458	tmRNA links to Rfam database...	0.69	0.61	0.77	57	63472	24	10	7	7	36
TMR_00469	tmRNA links to Rfam database...	0.73	0.64	0.84	64	64544	18	7	5	6	36
TMR_00472	tmRNA links to Rfam database...	0.67	0.61	0.73	59	64539	31	11	11	9	38
TMR_00519	tmRNA links to Rfam database...	0.63	0.56	0.72	53	63116	33	8	13	12	42
TMR_00520	tmRNA links to Rfam database...	0.65	0.58	0.74	57	63113	28	3	17	8	42
TMR_00522	tmRNA links to Rfam database...	0.60	0.53	0.68	51	63115	31	7	17	7	46
TMR_00528	tmRNA links to Rfam database...	0.50	0.45	0.56	44	63111	40	12	23	5	53
TMR_00540	tmRNA links to Rfam database...	0.66	0.60	0.73	62	73451	28	7	16	5	42
TMR_00568	tmRNA links to Rfam database...	0.71	0.66	0.76	65	60641	29	2	18	9	34
TMR_00571	tmRNA links to Rfam database...	0.74	0.69	0.79	68	60640	27	2	16	9	31
TMR_00580	tmRNA links to Rfam database...	0.73	0.67	0.80	67	60642	26	5	12	9	33
TMR_00584	tmRNA links to Rfam database...	0.78	0.70	0.87	68	60997	19	2	8	9	29
TMR_00586	tmRNA links to Rfam database...	0.74	0.68	0.81	66	60994	23	5	10	8	31
TMR_00616	tmRNA links to Rfam database...	0.69	0.62	0.76	61	67081	25	9	10	6	38
TMR_00699	tmRNA links to Rfam database...	0.70	0.56	0.88	57	67096	13	1	7	5	45
TMR_00702	tmRNA links to Rfam database...	0.61	0.50	0.75	50	67094	24	4	13	7	50
TMR_00703	tmRNA links to Rfam database...	0.71	0.60	0.84	59	67458	17	2	9	6	40

^top

Performance of Fold - scored lower in this pairwise comparison

1. Total counts & total scores for Fold

Total Base Pair Counts
Total TP	33989
Total TN	119661784
Total FP	40644
Total FP CONTRA	5326
Total FP INCONS	30798
Total FP COMP	4520
Total FN	36030

Total Scores
MCC	0.485
Average MCC ± 95% Confidence Intervals	0.619 ± 0.019
Sensitivity	0.485
Positive Predictive Value	0.485
Nr of predictions	639

^top

2. Individual counts for Fold [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00004	RNaseP_bact_a links to Rfam database...	0.68	0.68	0.69	66	47799	34	9	21	4	31
ASE_00005	RNaseP_bact_a links to Rfam database...	0.73	0.68	0.78	80	57868	29	0	22	7	37
ASE_00006	RNaseP_bact_a links to Rfam database...	0.49	0.51	0.48	47	47488	55	11	40	4	46
ASE_00007	RNaseP_bact_a links to Rfam database...	0.53	0.52	0.54	57	59579	56	2	47	7	53
ASE_00012	RNaseP_bact_a links to Rfam database...	0.35	0.34	0.35	42	73801	81	7	70	4	81
ASE_00018	RNaseP_bact_a links to Rfam database...	0.54	0.51	0.56	69	80478	56	1	53	2	65
ASE_00020	RNaseP_bact_a links to Rfam database...	0.56	0.54	0.58	68	73803	52	8	41	3	58
ASE_00021	RNaseP_bact_a links to Rfam database...	0.63	0.59	0.68	94	104057	52	4	41	7	66
ASE_00022	RNaseP_bact_b links to Rfam database...	0.28	0.27	0.29	34	82911	86	6	77	3	90
ASE_00028	RNaseP_bact_b links to Rfam database...	0.72	0.70	0.75	88	84548	39	6	24	9	38
ASE_00035	RNaseP_bact_a links to Rfam database...	0.24	0.24	0.24	28	70384	91	9	79	3	90
ASE_00037	RNaseP_bact_a links to Rfam database...	0.37	0.35	0.39	39	59239	67	2	60	5	71
ASE_00038	RNaseP_bact_a links to Rfam database...	0.43	0.43	0.44	43	53530	58	2	53	3	58
ASE_00040	RNaseP_bact_a links to Rfam database...	0.48	0.46	0.50	61	78881	67	4	57	6	72
ASE_00041	RNaseP_bact_a links to Rfam database...	0.44	0.42	0.46	45	57532	56	5	48	3	63
ASE_00042	RNaseP_bact_a links to Rfam database...	0.44	0.41	0.46	60	89970	74	3	67	4	85
ASE_00044	RNaseP_bact_a links to Rfam database...	0.73	0.73	0.73	77	54510	33	4	24	5	28
ASE_00045	RNaseP_bact_b links to Rfam database...	0.66	0.66	0.66	53	47198	34	6	21	7	27
ASE_00064	RNaseP_bact_a links to Rfam database...	0.37	0.38	0.36	34	45357	67	6	54	7	55
ASE_00068	RNaseP_bact_a links to Rfam database...	0.51	0.48	0.53	41	37598	41	2	34	5	44
ASE_00074	RNaseP_bact_a links to Rfam database...	0.48	0.47	0.49	56	67782	59	4	54	1	63
ASE_00075	RNaseP_bact_a links to Rfam database...	0.65	0.61	0.69	99	108668	53	4	40	9	63
ASE_00077	RNaseP_bact_a links to Rfam database...	0.57	0.56	0.58	48	45067	41	4	31	6	38
ASE_00078	RNaseP_bact_a links to Rfam database...	0.76	0.76	0.76	63	42988	26	3	17	6	20
ASE_00080	RNaseP_bact_a links to Rfam database...	0.55	0.54	0.57	66	71516	54	5	44	5	57
ASE_00081	RNaseP_bact_a links to Rfam database...	0.51	0.52	0.52	50	49673	49	5	42	2	47
ASE_00082	RNaseP_bact_a links to Rfam database...	0.77	0.73	0.81	85	70395	32	3	17	12	31
ASE_00083	RNaseP_bact_a links to Rfam database...	0.59	0.58	0.60	64	62375	47	8	34	5	46
ASE_00084	RNaseP_bact_a links to Rfam database...	0.59	0.60	0.58	59	53527	45	6	36	3	40
ASE_00087	RNaseP_bact_a links to Rfam database...	0.76	0.72	0.80	103	88281	32	3	23	6	41
ASE_00090	RNaseP_bact_a links to Rfam database...	0.66	0.66	0.65	67	55508	43	4	32	7	34
ASE_00092	RNaseP_bact_a links to Rfam database...	0.50	0.50	0.50	56	63434	60	12	44	4	57
ASE_00099	RNaseP_bact_a links to Rfam database...	0.66	0.63	0.70	75	64513	38	1	31	6	45
ASE_00104	RNaseP_bact_a links to Rfam database...	0.73	0.67	0.78	80	64159	28	1	21	6	39
ASE_00105	RNaseP_bact_a links to Rfam database...	0.39	0.38	0.41	42	64158	69	8	53	8	69
ASE_00107	RNaseP_bact_a links to Rfam database...	0.64	0.62	0.67	79	73035	44	2	37	5	48
ASE_00114	RNaseP_bact_b links to Rfam database...	0.36	0.35	0.36	27	45377	59	3	44	12	50
ASE_00115	RNaseP_bact_a links to Rfam database...	0.68	0.68	0.68	69	54514	40	5	27	8	32
ASE_00118	RNaseP_bact_a links to Rfam database...	0.32	0.31	0.33	32	60628	70	5	61	4	70
ASE_00119	RNaseP_bact_a links to Rfam database...	0.81	0.81	0.82	87	62729	21	2	17	2	21
ASE_00123	RNaseP_bact_a links to Rfam database...	0.53	0.51	0.55	43	38425	39	2	33	4	42
ASE_00125	RNaseP_bact_a links to Rfam database...	0.71	0.66	0.77	58	39265	27	0	17	10	30
ASE_00126	RNaseP_bact_a links to Rfam database...	0.63	0.63	0.62	52	40386	32	3	29	0	30
ASE_00128	RNaseP_bact_a links to Rfam database...	0.66	0.64	0.68	64	53207	36	5	25	6	36
ASE_00129	RNaseP_bact_a links to Rfam database...	0.70	0.68	0.74	75	62733	34	3	24	7	36
ASE_00131	RNaseP_bact_a links to Rfam database...	0.61	0.58	0.64	49	39264	35	1	26	8	36
ASE_00134	RNaseP_bact_a links to Rfam database...	0.41	0.42	0.41	40	50305	61	8	50	3	55
ASE_00135	RNaseP_bact_a links to Rfam database...	0.49	0.48	0.50	52	63086	59	7	45	7	57
ASE_00136	RNaseP_bact_a links to Rfam database...	0.73	0.71	0.76	65	48120	28	0	20	8	27
ASE_00137	RNaseP_bact_a links to Rfam database...	0.76	0.74	0.77	73	48421	28	4	18	6	25
ASE_00138	RNaseP_bact_a links to Rfam database...	0.49	0.48	0.51	39	40393	43	4	34	5	42
ASE_00140	RNaseP_bact_a links to Rfam database...	0.68	0.64	0.73	80	70767	32	4	25	3	45
ASE_00142	RNaseP_bact_a links to Rfam database...	0.68	0.66	0.71	80	67048	38	3	30	5	42
ASE_00146	RNaseP_bact_a links to Rfam database...	0.60	0.56	0.64	69	70769	42	1	37	4	55
ASE_00153	RNaseP_nuc links to Rfam database...	0.57	0.60	0.54	44	57549	73	9	28	36	29
ASE_00161	RNaseP_bact_b links to Rfam database...	0.47	0.49	0.45	43	53533	57	15	37	5	44
ASE_00163	RNaseP_bact_a links to Rfam database...	0.33	0.31	0.34	29	53216	65	5	51	9	64
ASE_00165	RNaseP_bact_a links to Rfam database...	0.43	0.43	0.44	43	52878	56	5	49	2	58
ASE_00170	RNaseP_bact_a links to Rfam database...	0.79	0.76	0.83	71	48742	24	2	13	9	22
ASE_00171	RNaseP_bact_a links to Rfam database...	0.56	0.55	0.58	52	48426	40	3	35	2	42
ASE_00172	RNaseP_bact_a links to Rfam database...	0.60	0.60	0.60	64	58890	44	5	37	2	42
ASE_00174	RNaseP_bact_a links to Rfam database...	0.49	0.49	0.50	53	60968	56	8	46	2	56
ASE_00175	RNaseP_bact_a links to Rfam database...	0.71	0.69	0.73	74	59929	34	2	26	6	33
ASE_00179	RNaseP_bact_a links to Rfam database...	0.49	0.50	0.48	42	44166	45	7	38	0	42
ASE_00180	RNaseP_bact_a links to Rfam database...	0.56	0.54	0.58	54	51267	46	3	36	7	46
ASE_00181	RNaseP_bact_a links to Rfam database...	0.60	0.59	0.61	63	57527	46	3	37	6	43
ASE_00182	RNaseP_bact_a links to Rfam database...	0.57	0.55	0.59	75	84128	55	5	47	3	61
ASE_00183	RNaseP_bact_a links to Rfam database...	0.71	0.67	0.75	76	61323	32	0	26	6	37
ASE_00184	RNaseP_bact_a links to Rfam database...	0.70	0.70	0.70	71	54514	34	2	28	4	31
ASE_00185	RNaseP_bact_a links to Rfam database...	0.77	0.73	0.82	94	73421	27	1	20	6	34
ASE_00186	RNaseP_bact_a links to Rfam database...	0.68	0.67	0.69	88	78876	45	3	36	6	44
ASE_00190	RNaseP_bact_b links to Rfam database...	0.59	0.57	0.62	51	45369	38	3	28	7	39
ASE_00197	RNaseP_bact_a links to Rfam database...	0.59	0.57	0.63	82	89122	60	3	46	11	63
ASE_00198	RNaseP_bact_a links to Rfam database...	0.78	0.73	0.83	74	52561	21	2	13	6	28
ASE_00203	RNaseP_bact_a links to Rfam database...	0.72	0.71	0.73	68	46572	31	4	21	6	28
ASE_00212	RNaseP_bact_a links to Rfam database...	0.59	0.57	0.60	85	93820	64	3	53	8	63
ASE_00214	RNaseP_bact_a links to Rfam database...	0.75	0.74	0.76	76	56180	34	3	21	10	27
ASE_00215	RNaseP_bact_a links to Rfam database...	0.60	0.58	0.62	57	48424	39	5	30	4	42
ASE_00216	RNaseP_bact_a links to Rfam database...	0.27	0.28	0.26	23	39252	66	12	53	1	59
ASE_00217	RNaseP_bact_a links to Rfam database...	0.31	0.30	0.33	27	40388	63	4	51	8	63
ASE_00221	RNaseP_bact_a links to Rfam database...	0.55	0.52	0.59	61	64517	46	2	40	4	56
ASE_00228	RNaseP_bact_a links to Rfam database...	0.52	0.53	0.52	46	46882	47	13	30	4	40
ASE_00229	RNaseP_bact_a links to Rfam database...	0.72	0.70	0.73	61	42403	29	1	21	7	26
ASE_00231	RNaseP_bact_a links to Rfam database...	0.45	0.45	0.46	43	47801	56	2	49	5	53
ASE_00232	RNaseP_bact_a links to Rfam database...	0.66	0.67	0.65	56	38417	33	10	20	3	28
ASE_00234	RNaseP_bact_a links to Rfam database...	0.54	0.50	0.58	65	75353	53	4	44	5	64
ASE_00238	RNaseP_bact_a links to Rfam database...	0.68	0.65	0.71	74	64157	36	2	28	6	40
ASE_00241	RNaseP_bact_a links to Rfam database...	0.69	0.69	0.68	60	43868	31	2	26	3	27
ASE_00242	RNaseP_bact_a links to Rfam database...	0.49	0.48	0.50	54	60968	55	1	52	2	58
ASE_00248	RNaseP_bact_a links to Rfam database...	0.38	0.35	0.40	40	62382	61	4	55	2	74
ASE_00254	RNaseP_bact_a links to Rfam database...	0.29	0.29	0.30	24	36776	61	5	51	5	58
ASE_00255	RNaseP_bact_a links to Rfam database...	0.51	0.50	0.52	65	74567	61	4	55	2	65
ASE_00257	RNaseP_bact_a links to Rfam database...	0.49	0.47	0.50	46	50948	50	2	44	4	51
ASE_00263	RNaseP_bact_a links to Rfam database...	0.57	0.58	0.58	69	70380	54	5	46	3	51
ASE_00267	RNaseP_bact_a links to Rfam database...	0.65	0.63	0.68	55	45069	36	2	24	10	33
ASE_00270	RNaseP_bact_a links to Rfam database...	0.82	0.79	0.85	101	72271	24	1	17	6	27
ASE_00274	RNaseP_bact_a links to Rfam database...	0.42	0.41	0.43	42	55514	57	7	48	2	61
ASE_00277	RNaseP_bact_a links to Rfam database...	0.42	0.43	0.41	39	48110	59	9	47	3	52
ASE_00279	RNaseP_bact_a links to Rfam database...	0.49	0.48	0.51	48	53207	49	7	39	3	53
ASE_00280	RNaseP_bact_a links to Rfam database...	0.52	0.50	0.53	49	51911	47	8	35	4	49
ASE_00281	RNaseP_bact_a links to Rfam database...	0.79	0.75	0.83	66	44471	23	0	14	9	22
ASE_00282	RNaseP_bact_a links to Rfam database...	0.44	0.44	0.44	56	77688	71	4	67	0	71
ASE_00283	RNaseP_bact_a links to Rfam database...	0.71	0.68	0.74	73	61677	34	3	23	8	34
ASE_00284	RNaseP_bact_a links to Rfam database...	0.68	0.66	0.71	71	58211	37	4	25	8	37
ASE_00285	RNaseP_bact_a links to Rfam database...	0.81	0.76	0.86	93	68898	25	2	13	10	29
ASE_00286	RNaseP_bact_a links to Rfam database...	0.39	0.38	0.40	35	46577	63	2	51	10	57
ASE_00287	RNaseP_bact_a links to Rfam database...	0.71	0.68	0.74	70	54851	31	5	20	6	33
ASE_00292	RNaseP_bact_a links to Rfam database...	0.44	0.42	0.46	58	81685	71	2	65	4	80
ASE_00294	RNaseP_bact_a links to Rfam database...	0.60	0.56	0.64	96	114332	57	3	50	4	75
ASE_00296	RNaseP_bact_a links to Rfam database...	0.42	0.41	0.44	59	91673	77	9	65	3	86
ASE_00297	RNaseP_bact_a links to Rfam database...	0.48	0.50	0.47	49	52871	56	8	47	1	49
ASE_00298	RNaseP_bact_a links to Rfam database...	0.52	0.50	0.54	56	67425	51	1	46	4	57
ASE_00305	RNaseP_bact_b links to Rfam database...	0.55	0.53	0.56	45	54535	48	4	31	13	40
ASE_00318	RNaseP_bact_b links to Rfam database...	0.64	0.64	0.65	75	80084	46	11	30	5	43
ASE_00321	RNaseP_bact_b links to Rfam database...	0.39	0.40	0.39	35	54526	58	11	43	4	53
ASE_00328	RNaseP_bact_b links to Rfam database...	0.68	0.65	0.72	73	72669	43	4	25	14	39
ASE_00332	RNaseP_bact_a links to Rfam database...	0.48	0.46	0.50	64	81683	66	2	61	3	74
ASE_00335	RNaseP_bact_b links to Rfam database...	0.39	0.39	0.40	45	75353	75	9	59	7	71
ASE_00340	RNaseP_bact_a links to Rfam database...	0.75	0.74	0.76	63	45973	27	6	14	7	22
ASE_00342	RNaseP_bact_a links to Rfam database...	0.62	0.58	0.67	67	62381	34	1	32	1	48
ASE_00353	RNaseP_bact_a links to Rfam database...	0.56	0.56	0.56	60	57863	51	4	43	4	47
ASE_00361	RNaseP_bact_a links to Rfam database...	0.52	0.51	0.53	65	75343	61	11	47	3	62
ASE_00362	RNaseP_bact_a links to Rfam database...	0.59	0.59	0.59	54	48114	40	2	35	3	37
ASE_00363	RNaseP_bact_a links to Rfam database...	0.55	0.55	0.55	52	51266	49	3	39	7	42
ASE_00364	RNaseP_bact_a links to Rfam database...	0.74	0.72	0.76	76	54185	32	1	23	8	29
ASE_00366	RNaseP_bact_a links to Rfam database...	0.41	0.42	0.40	41	58550	63	10	52	1	57
ASE_00367	RNaseP_bact_a links to Rfam database...	0.50	0.52	0.48	45	42977	52	4	45	3	41
ASE_00369	RNaseP_bact_a links to Rfam database...	0.61	0.61	0.61	65	55839	45	2	39	4	42
ASE_00370	RNaseP_bact_a links to Rfam database...	0.54	0.55	0.53	46	41818	45	5	36	4	38
ASE_00372	RNaseP_bact_a links to Rfam database...	0.69	0.69	0.70	69	51904	36	6	24	6	31
ASE_00374	RNaseP_bact_a links to Rfam database...	0.68	0.67	0.69	59	44765	28	3	23	2	29
ASE_00376	RNaseP_bact_a links to Rfam database...	0.60	0.59	0.61	62	56852	47	1	38	8	43
ASE_00377	RNaseP_bact_a links to Rfam database...	0.72	0.70	0.74	75	57528	33	3	24	6	32
ASE_00379	RNaseP_bact_a links to Rfam database...	0.48	0.47	0.49	42	45971	53	3	40	10	47
ASE_00382	RNaseP_bact_a links to Rfam database...	0.67	0.67	0.68	56	41823	31	6	20	5	28
ASE_00383	RNaseP_bact_a links to Rfam database...	0.43	0.42	0.44	44	54516	62	5	50	7	61
ASE_00384	RNaseP_bact_a links to Rfam database...	0.58	0.58	0.58	53	48425	40	3	35	2	39
ASE_00386	RNaseP_bact_a links to Rfam database...	0.51	0.51	0.51	49	50307	49	7	40	2	47
ASE_00387	RNaseP_bact_a links to Rfam database...	0.58	0.56	0.60	58	55848	44	6	33	5	46
ASE_00388	RNaseP_bact_a links to Rfam database...	0.59	0.56	0.63	50	45673	41	2	28	11	39
ASE_00390	RNaseP_bact_a links to Rfam database...	0.62	0.60	0.64	51	42115	39	0	29	10	34
ASE_00393	RNaseP_bact_a links to Rfam database...	0.49	0.47	0.51	44	47808	50	2	41	7	49
ASE_00394	RNaseP_bact_a links to Rfam database...	0.77	0.75	0.79	70	46882	24	2	17	5	23
ASE_00395	RNaseP_bact_a links to Rfam database...	0.64	0.65	0.63	55	41528	37	3	30	4	29
ASE_00396	RNaseP_bact_a links to Rfam database...	0.53	0.53	0.53	44	41533	43	4	35	4	39
ASE_00397	RNaseP_bact_a links to Rfam database...	0.75	0.72	0.78	76	54518	29	2	19	8	29
ASE_00398	RNaseP_bact_a links to Rfam database...	0.61	0.58	0.64	60	55851	43	1	33	9	44
ASE_00400	RNaseP_bact_a links to Rfam database...	0.64	0.62	0.67	66	57871	38	1	32	5	40
ASE_00401	RNaseP_bact_a links to Rfam database...	0.59	0.60	0.59	75	76901	53	7	45	1	51
ASE_00402	RNaseP_bact_a links to Rfam database...	0.76	0.74	0.79	63	42406	22	2	15	5	22
ASE_00403	RNaseP_bact_a links to Rfam database...	0.67	0.64	0.70	68	55848	34	0	29	5	39
ASE_00404	RNaseP_bact_a links to Rfam database...	0.42	0.41	0.44	35	42991	54	1	44	9	50
ASE_00406	RNaseP_bact_a links to Rfam database...	0.80	0.77	0.83	72	48741	25	1	14	10	22
ASE_00411	RNaseP_bact_a links to Rfam database...	0.47	0.46	0.48	41	49370	53	5	39	9	48
ASE_00412	RNaseP_bact_a links to Rfam database...	0.46	0.46	0.47	48	58209	57	9	45	3	57
ASE_00413	RNaseP_bact_a links to Rfam database...	0.55	0.58	0.53	47	44462	45	13	29	3	34
ASE_00415	RNaseP_bact_a links to Rfam database...	0.66	0.65	0.66	67	54845	36	6	28	2	36
ASE_00416	RNaseP_bact_a links to Rfam database...	0.64	0.62	0.66	79	77301	49	3	38	8	48
ASE_00419	RNaseP_bact_a links to Rfam database...	0.74	0.74	0.75	76	54845	27	9	16	2	27
ASE_00422	RNaseP_bact_a links to Rfam database...	0.78	0.77	0.79	72	46880	26	5	14	7	22
ASE_00423	RNaseP_bact_a links to Rfam database...	0.58	0.58	0.59	63	56846	44	7	37	0	46
ASE_00427	RNaseP_nuc links to Rfam database...	0.16	0.20	0.14	9	40691	80	18	37	25	37
ASE_00428	RNaseP_bact_a links to Rfam database...	0.77	0.74	0.80	93	76520	29	3	20	6	32
ASE_00430	RNaseP_bact_a links to Rfam database...	0.71	0.70	0.72	68	46877	33	5	21	7	29
ASE_00437	RNaseP_bact_a links to Rfam database...	0.44	0.41	0.47	56	79281	68	0	64	4	79
ASE_00441	RNaseP_bact_a links to Rfam database...	0.81	0.77	0.86	86	64161	24	1	13	10	26
ASE_00448	RNaseP_bact_a links to Rfam database...	0.23	0.23	0.23	26	64147	95	8	80	7	86
ASE_00451	RNaseP_bact_a links to Rfam database...	0.64	0.61	0.67	76	70762	43	3	35	5	49
CRW_00024	SSU_rRNA_archaea links to Rfam database...	0.56	0.57	0.56	259	1085140	238	22	180	36	199
CRW_00034	SSU_rRNA_bacteria links to Rfam database...	0.62	0.63	0.61	299	1141829	219	35	153	31	175
CRW_00048	SSU_rRNA_bacteria links to Rfam database...	0.51	0.51	0.52	239	1170753	241	24	199	18	231
CRW_00054	SSU_rRNA_bacteria links to Rfam database...	0.40	0.41	0.40	185	1107355	286	30	246	10	271
CRW_00059	SSU_rRNA_bacteria links to Rfam database...	0.44	0.44	0.44	207	1172278	279	31	230	18	266
CRW_00061	SSU_rRNA_bacteria links to Rfam database...	0.54	0.54	0.54	259	1181475	236	33	186	17	217
CRW_00068	SSU_rRNA_bacteria links to Rfam database...	0.43	0.43	0.43	198	1108845	279	32	230	17	259
CRW_00096	SSU_rRNA_bacteria links to Rfam database...	0.42	0.43	0.42	200	1178403	299	28	249	22	265
CRW_00140	SSU_rRNA_bacteria links to Rfam database...	0.38	0.38	0.38	176	1135818	299	27	257	15	287
CRW_00141	SSU_rRNA_bacteria links to Rfam database...	0.53	0.53	0.54	253	1201553	246	34	185	27	223
CRW_00150	SSU_rRNA_bacteria links to Rfam database...	0.45	0.44	0.45	204	1152472	262	26	219	17	262
CRW_00152	SSU_rRNA_bacteria links to Rfam database...	0.53	0.52	0.54	246	1179962	231	33	175	23	225
CRW_00166	SSU_rRNA_bacteria links to Rfam database...	0.40	0.40	0.39	188	1190720	309	32	256	21	280
CRW_00173	SSU_rRNA_bacteria links to Rfam database...	0.28	0.28	0.28	125	1082214	333	31	286	16	320
CRW_00177	SSU_rRNA_bacteria links to Rfam database...	0.49	0.48	0.50	226	1178426	251	26	202	23	247
CRW_00196	SSU_rRNA_bacteria links to Rfam database...	0.45	0.46	0.44	219	1207740	296	42	234	20	256
CRW_00230	SSU_rRNA_bacteria links to Rfam database...	0.53	0.52	0.54	247	1198465	241	32	182	27	231
CRW_00245	SSU_rRNA_bacteria links to Rfam database...	0.37	0.37	0.37	167	1105882	297	32	247	18	286
CRW_00248	SSU_rRNA_bacteria links to Rfam database...	0.49	0.49	0.48	238	1218645	286	36	222	28	246
CRW_00250	SSU_rRNA_bacteria links to Rfam database...	0.37	0.38	0.37	181	1198432	321	48	265	8	297
CRW_00256	SSU_rRNA_bacteria links to Rfam database...	0.39	0.39	0.40	183	1192281	294	41	235	18	285
CRW_00270	SSU_rRNA_bacteria links to Rfam database...	0.54	0.54	0.54	245	1111832	232	27	182	23	210
CRW_00271	SSU_rRNA_bacteria links to Rfam database...	0.36	0.36	0.37	168	1122293	309	37	253	19	294
CRW_00273	SSU_rRNA_bacteria links to Rfam database...	0.52	0.52	0.52	233	1085151	238	41	176	21	213
CRW_00275	SSU_rRNA_bacteria links to Rfam database...	0.59	0.59	0.59	271	1114809	212	28	163	21	186
CRW_00277	SSU_rRNA_bacteria links to Rfam database...	0.32	0.32	0.32	144	1110348	313	38	265	10	309
CRW_00278	SSU_rRNA_bacteria links to Rfam database...	0.36	0.35	0.37	159	1129828	293	31	238	24	291
CRW_00279	SSU_rRNA_bacteria links to Rfam database...	0.58	0.56	0.59	262	1179969	207	27	158	22	202
CRW_00280	SSU_rRNA_bacteria links to Rfam database...	0.33	0.33	0.32	151	1117794	327	43	272	12	302
CRW_00281	SSU_rRNA_bacteria links to Rfam database...	0.53	0.52	0.53	243	1144885	238	27	186	25	221
CRW_00284	SSU_rRNA_bacteria links to Rfam database...	0.29	0.29	0.29	130	1131315	331	40	275	16	326
CRW_00285	SSU_rRNA_bacteria links to Rfam database...	0.48	0.49	0.48	225	1117789	265	38	208	19	233
CRW_00289	SSU_rRNA_bacteria links to Rfam database...	0.51	0.50	0.52	237	1189193	251	38	185	28	239
CRW_00298	SSU_rRNA_eukarya links to Rfam database...	0.22	0.24	0.21	118	1620334	479	100	348	31	376
CRW_00301	SSU_rRNA_eukarya links to Rfam database...	0.29	0.30	0.29	156	1761959	461	80	308	73	363
CRW_00306	SSU_rRNA_eukarya links to Rfam database...	0.09	0.09	0.08	43	1445337	532	80	390	62	419
CRW_00310	SSU_rRNA_eukarya links to Rfam database...	0.28	0.29	0.27	153	1805378	473	77	342	54	368
CRW_00326	SSU_rRNA_eukarya links to Rfam database...	0.40	0.40	0.39	203	1627589	370	67	251	52	299
CRW_00330	SSU_rRNA_eukarya links to Rfam database...	0.31	0.32	0.30	166	1988453	469	82	314	73	351
CRW_00332	SSU_rRNA_eukarya links to Rfam database...	0.19	0.21	0.18	99	1769473	516	102	347	67	378
CRW_00333	SSU_rRNA_eukarya links to Rfam database...	0.32	0.33	0.31	169	1891947	449	66	303	80	345
CRW_00345	SSU_rRNA_eukarya links to Rfam database...	0.33	0.34	0.33	171	1586345	407	61	294	52	327
CRW_00346	SSU_rRNA_eukarya links to Rfam database...	0.33	0.35	0.32	175	1584535	423	75	305	43	326
CRW_00348	SSU_rRNA_eukarya links to Rfam database...	0.28	0.28	0.27	142	1614977	433	60	324	49	361
CRW_00358	SSU_rRNA_eukarya links to Rfam database...	0.36	0.37	0.35	186	1674831	392	68	280	44	321
CRW_00366	SSU_rRNA_eukarya links to Rfam database...	0.27	0.29	0.25	138	1579211	437	87	317	33	344
CRW_00370	SSU_rRNA_eukarya links to Rfam database...	0.28	0.29	0.27	148	1640226	440	80	312	48	358
CRW_00371	SSU_rRNA_eukarya links to Rfam database...	0.34	0.35	0.33	173	1611383	414	61	293	60	323
CRW_00372	SSU_rRNA_eukarya links to Rfam database...	0.26	0.28	0.25	137	1625762	453	84	323	46	361
CRW_00379	SSU_rRNA_eukarya links to Rfam database...	0.44	0.45	0.44	241	2126401	411	60	251	100	293
CRW_00386	SSU_rRNA_eukarya links to Rfam database...	0.29	0.30	0.28	155	1750699	443	74	328	41	360
CRW_00403	SSU_rRNA_eukarya links to Rfam database...	0.33	0.34	0.33	157	1606045	425	57	269	99	307
CRW_00411	SSU_rRNA_eukarya links to Rfam database...	0.35	0.36	0.34	177	1614982	392	60	284	48	319
CRW_00414	SSU_rRNA_eukarya links to Rfam database...	0.29	0.31	0.28	152	1665688	448	68	317	63	343
CRW_00466	SSU_rRNA_bacteria links to Rfam database...	0.57	0.56	0.57	257	1116315	221	28	165	28	201
CRW_00548	5S_rRNA links to Rfam database...	0.85	0.82	0.89	31	7346	7	0	4	3	7
CRW_00552	5S_rRNA links to Rfam database...	0.67	0.64	0.71	25	7105	14	3	7	4	14
CRW_00555	5S_rRNA links to Rfam database...	0.82	0.78	0.86	31	7590	5	0	5	0	9
CRW_00567	5S_rRNA links to Rfam database...	0.71	0.73	0.71	29	7462	15	3	9	3	11
CRW_00570	5S_rRNA links to Rfam database...	0.88	0.86	0.89	32	6867	7	0	4	3	5
CRW_00573	5S_rRNA links to Rfam database...	0.25	0.25	0.25	10	7100	30	2	28	0	30
CRW_00589	SSU_rRNA_bacteria links to Rfam database...	0.30	0.30	0.31	133	1094029	317	35	263	19	312
CRW_00590	SSU_rRNA_bacteria links to Rfam database...	0.42	0.42	0.42	191	1119306	279	34	225	20	261
CRW_00591	SSU_rRNA_bacteria links to Rfam database...	0.50	0.50	0.50	222	1098458	256	20	203	33	224
CRW_00598	SSU_rRNA_eukarya links to Rfam database...	0.35	0.37	0.34	181	1665691	415	68	285	62	310
CRW_00758	SSU_rRNA_eukarya links to Rfam database...	0.25	0.26	0.24	127	1640244	444	62	333	49	356
CRW_00759	SSU_rRNA_eukarya links to Rfam database...	0.31	0.32	0.29	156	1636612	443	67	310	66	325
CRW_00760	SSU_rRNA_eukarya links to Rfam database...	0.27	0.29	0.26	140	1638417	454	75	323	56	346
CRW_00772	SSU_rRNA_bacteria links to Rfam database...	0.25	0.25	0.25	100	945594	319	37	269	13	304
CRW_00789	SSU_rRNA_bacteria links to Rfam database...	0.39	0.38	0.39	172	1137342	303	31	241	31	275
CRW_00795	SSU_rRNA_bacteria links to Rfam database...	0.32	0.33	0.30	130	1152494	342	43	254	45	264
CRW_00849	SSU_rRNA_bacteria links to Rfam database...	0.53	0.53	0.52	250	1117779	255	29	202	24	220
CRW_00997	SSU_rRNA_bacteria links to Rfam database...	0.37	0.38	0.37	175	1135806	315	41	256	18	289
CRW_01153	SSU_rRNA_eukarya links to Rfam database...	0.36	0.37	0.35	187	1605990	391	60	291	40	316
CRW_01171	SSU_rRNA_eukarya links to Rfam database...	0.28	0.28	0.27	143	1593476	430	75	311	44	363
CRW_01300	SSU_rRNA_eukarya links to Rfam database...	0.28	0.29	0.27	150	1693165	443	63	342	38	365
CRW_01484	5S_rRNA links to Rfam database...	0.17	0.18	0.18	7	7463	34	4	29	1	32
CRW_01485	5S_rRNA links to Rfam database...	0.47	0.44	0.52	17	7470	17	2	14	1	22
CRW_01487	5S_rRNA links to Rfam database...	0.45	0.44	0.47	18	7465	20	0	20	0	23
CRW_01489	5S_rRNA links to Rfam database...	0.44	0.44	0.45	17	7465	23	1	20	2	22
CRW_01491	5S_rRNA links to Rfam database...	0.00	0.00	0.00	0	8346	39	3	36	0	43
CRW_01492	5S_rRNA links to Rfam database...	0.76	0.74	0.78	31	7586	14	0	9	5	11
CRW_01494	5S_rRNA links to Rfam database...	0.72	0.68	0.77	27	7105	9	0	8	1	13
CRW_01497	5S_rRNA links to Rfam database...	0.55	0.48	0.63	19	7110	15	0	11	4	21
CRW_01498	5S_rRNA links to Rfam database...	0.89	0.86	0.93	37	8088	4	0	3	1	6
CRW_01499	5S_rRNA links to Rfam database...	0.32	0.32	0.33	13	7962	27	1	25	1	28
CRW_01500	5S_rRNA links to Rfam database...	0.89	0.84	0.94	32	7716	5	0	2	3	6
CRW_01501	5S_rRNA links to Rfam database...	0.60	0.60	0.60	27	8470	21	1	17	3	18
CRW_01508	5S_rRNA links to Rfam database...	0.90	0.86	0.95	36	7963	7	0	2	5	6
CRW_01532	5S_rRNA links to Rfam database...	0.75	0.73	0.77	27	7105	13	0	8	5	10
CRW_01533	5S_rRNA links to Rfam database...	0.79	0.78	0.81	29	7104	12	0	7	5	8
CRW_01534	5S_rRNA links to Rfam database...	0.79	0.78	0.81	29	7104	11	0	7	4	8
CRW_01535	5S_rRNA links to Rfam database...	0.92	0.89	0.94	33	7105	5	0	2	3	4
CRW_01536	5S_rRNA links to Rfam database...	0.88	0.86	0.89	32	6985	4	0	4	0	5
CRW_01537	5S_rRNA links to Rfam database...	0.57	0.54	0.61	20	7107	18	1	12	5	17
CRW_01539	5S_rRNA links to Rfam database...	0.82	0.81	0.83	30	7104	12	0	6	6	7
CRW_01540	5S_rRNA links to Rfam database...	0.35	0.35	0.36	13	7104	25	2	21	2	24
CRW_01541	5S_rRNA links to Rfam database...	0.87	0.84	0.91	31	7106	5	0	3	2	6
CRW_01542	5S_rRNA links to Rfam database...	0.23	0.24	0.22	9	7099	32	3	29	0	28
CRW_01544	5S_rRNA links to Rfam database...	0.86	0.84	0.89	31	7105	8	0	4	4	6
CRW_01548	5S_rRNA links to Rfam database...	0.87	0.84	0.91	31	6987	6	0	3	3	6
CRW_01555	5S_rRNA links to Rfam database...	0.79	0.76	0.82	28	9011	11	0	6	5	9
CRW_01556	5S_rRNA links to Rfam database...	0.85	0.81	0.88	30	7106	9	0	4	5	7
CRW_01557	5S_rRNA links to Rfam database...	0.92	0.89	0.94	33	7105	5	0	2	3	4
CRW_01559	5S_rRNA links to Rfam database...	0.79	0.78	0.81	29	7224	12	0	7	5	8
CRW_01562	5S_rRNA links to Rfam database...	0.83	0.78	0.88	29	7107	8	0	4	4	8
CRW_01563	5S_rRNA links to Rfam database...	0.70	0.65	0.75	24	6871	9	0	8	1	13
CRW_01566	5S_rRNA links to Rfam database...	0.55	0.54	0.57	20	7105	17	1	14	2	17
CRW_01568	5S_rRNA links to Rfam database...	0.78	0.78	0.78	29	7103	12	0	8	4	8
CRW_01569	5S_rRNA links to Rfam database...	0.79	0.78	0.81	29	7104	11	0	7	4	8
CRW_01570	5S_rRNA links to Rfam database...	0.77	0.76	0.78	28	7104	14	0	8	6	9
CRW_01572	5S_rRNA links to Rfam database...	0.22	0.22	0.23	8	6986	27	6	21	0	29
CRW_01573	5S_rRNA links to Rfam database...	0.92	0.89	0.94	33	7225	5	0	2	3	4
CRW_01578	5S_rRNA links to Rfam database...	0.92	0.89	0.94	33	7105	5	0	2	3	4
CRW_01580	5S_rRNA links to Rfam database...	0.24	0.24	0.24	9	7103	28	4	24	0	28
CRW_01581	5S_rRNA links to Rfam database...	0.30	0.27	0.33	10	7110	21	0	20	1	27
CRW_01583	5S_rRNA links to Rfam database...	0.80	0.76	0.85	28	7107	9	0	5	4	9
CRW_01584	5S_rRNA links to Rfam database...	0.89	0.86	0.91	32	7105	7	0	3	4	5
CRW_01590	5S_rRNA links to Rfam database...	0.24	0.24	0.24	9	7102	29	4	25	0	28
CRW_01593	5S_rRNA links to Rfam database...	0.79	0.78	0.81	29	7104	11	0	7	4	8
CRW_01595	5S_rRNA links to Rfam database...	0.60	0.57	0.64	21	8482	16	0	12	4	16
CRW_01599	5S_rRNA links to Rfam database...	0.23	0.24	0.22	9	7099	32	5	27	0	28
CRW_01603	5S_rRNA links to Rfam database...	0.77	0.73	0.82	27	7107	8	0	6	2	10
CRW_01605	5S_rRNA links to Rfam database...	-0.01	0.00	0.00	0	7102	38	6	32	0	37
CRW_01606	5S_rRNA links to Rfam database...	0.39	0.35	0.43	13	7110	18	2	15	1	24
CRW_01608	5S_rRNA links to Rfam database...	0.53	0.51	0.54	19	8350	18	0	16	2	18
CRW_01616	5S_rRNA links to Rfam database...	0.79	0.78	0.81	29	7104	12	0	7	5	8
CRW_01617	5S_rRNA links to Rfam database...	0.92	0.89	0.94	33	7105	5	0	2	3	4
CRW_01620	5S_rRNA links to Rfam database...	0.89	0.89	0.89	33	6984	6	0	4	2	4
CRW_01621	5S_rRNA links to Rfam database...	0.69	0.68	0.71	25	7105	12	0	10	2	12
CRW_01623	5S_rRNA links to Rfam database...	0.87	0.81	0.94	30	7108	5	0	2	3	7
CRW_01625	5S_rRNA links to Rfam database...	0.88	0.86	0.89	32	7104	6	0	4	2	5
PDB_00012	mir-TAR links to Rfam database...	1.00	1.00	1.00	7	399	3	0	0	3	0
PDB_00070	tRNA links to Rfam database...	0.57	0.58	0.56	14	2825	11	1	10	0	10
PDB_00213	Gammaretro_CES links to Rfam database...	0.87	0.80	0.94	33	5015	2	0	2	0	8
PDB_00229	tRNA links to Rfam database...	0.96	0.91	1.00	21	2754	0	0	0	0	2
PDB_00327	tRNA links to Rfam database...	0.65	0.65	0.65	15	3058	8	0	8	0	8
PDB_00362	tRNA links to Rfam database...	0.98	0.95	1.00	21	2829	0	0	0	0	1
PDB_00402	tRNA links to Rfam database...	0.27	0.30	0.26	7	2748	20	2	18	0	16
PDB_00431	tRNA links to Rfam database...	0.77	0.75	0.79	15	2192	5	0	4	1	5
PDB_00474	tRNA links to Rfam database...	0.96	0.91	1.00	21	2680	0	0	0	0	2
PDB_00553	mir-TAR links to Rfam database...	1.00	1.00	1.00	11	454	0	0	0	0	0
PDB_00571	tRNA links to Rfam database...	0.85	0.76	0.95	19	3301	1	1	0	0	6
PDB_00667	tRNA links to Rfam database...	0.71	0.68	0.75	15	2830	7	4	1	2	7
PDB_00703	SSU_rRNA_bacteria links to Rfam database...	0.48	0.46	0.50	229	1073385	256	28	203	25	266
PDB_00741	Entero_5_CRE links to Rfam database...	0.87	0.76	1.00	13	690	0	0	0	0	4
PDB_00810	s2m links to Rfam database...	0.91	0.82	1.00	14	1067	0	0	0	0	3
PDB_00828	Purine links to Rfam database...	0.88	0.78	1.00	21	2464	0	0	0	0	6
PDB_00829	Purine links to Rfam database...	0.86	0.75	1.00	18	2260	0	0	0	0	6
PDB_00854	SSU_rRNA_bacteria links to Rfam database...	0.46	0.46	0.46	246	1500244	334	36	252	46	289
PDB_00876	HIV_FE links to Rfam database...	0.97	0.95	1.00	19	971	0	0	0	0	1
PDB_01002	tRNA links to Rfam database...	0.93	0.86	1.00	18	2757	2	0	0	2	3
PDB_01020	Purine links to Rfam database...	0.86	0.74	1.00	17	2261	1	0	0	1	6
PDB_01050	UnaL2 links to Rfam database...	0.92	0.85	1.00	11	619	2	0	0	2	2
PDB_01053	tRNA links to Rfam database...	0.97	0.94	1.00	15	1363	0	0	0	0	1
PDB_01073	SAM links to Rfam database...	0.86	0.74	1.00	25	4346	1	0	0	1	9
PDB_01088	SSU_rRNA_bacteria links to Rfam database...	0.34	0.33	0.34	180	1470946	368	36	308	24	367
PDB_01103	SSU_rRNA_bacteria links to Rfam database...	0.44	0.44	0.44	245	1605966	343	42	275	26	317
PDB_01105	SSU_rRNA_bacteria links to Rfam database...	0.46	0.45	0.47	245	1433450	306	32	244	30	295
PDB_01114	TPP links to Rfam database...	0.42	0.37	0.48	10	2829	11	1	10	0	17
PDB_01120	SSU_rRNA_bacteria links to Rfam database...	0.31	0.30	0.33	158	1204643	339	37	290	12	369
PDB_01152	HIV_FS2 links to Rfam database...	0.88	0.79	1.00	11	550	0	0	0	0	3
PDB_01236	ykoK links to Rfam database...	0.73	0.69	0.77	37	11580	14	0	11	3	17
PDB_01273	SSU_rRNA_bacteria links to Rfam database...	0.38	0.38	0.39	186	1117784	320	28	262	30	305
RFA_00389	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00390	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00391	Hammerhead_3 links to Rfam database...	0.50	0.47	0.54	7	1418	7	1	5	1	8
RFA_00396	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	2	0	0	2	1
RFA_00402	Hammerhead_3 links to Rfam database...	0.33	0.33	0.33	5	1416	11	0	10	1	10
RFA_00409	Hammerhead_3 links to Rfam database...	0.55	0.53	0.57	8	1417	7	1	5	1	7
RFA_00416	Hammerhead_3 links to Rfam database...	0.93	0.93	0.93	14	1470	4	0	1	3	1
RFA_00433	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00434	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00436	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00440	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1470	2	0	0	2	0
RFA_00442	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00444	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1525	1	0	0	1	0
RFA_00583	Y_RNA links to Rfam database...	0.51	0.53	0.50	8	4934	23	0	8	15	7
RFA_00584	Y_RNA links to Rfam database...	0.87	0.87	0.87	13	2911	14	0	2	12	2
RFA_00585	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4836	14	0	0	14	0
RFA_00586	Y_RNA links to Rfam database...	0.97	0.93	1.00	14	3902	12	0	0	12	1
RFA_00587	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4836	11	0	0	11	0
RFA_00588	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4545	15	0	0	15	0
RFA_00589	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4356	17	0	0	17	0
RFA_00594	Y_RNA links to Rfam database...	0.90	0.87	0.93	13	2761	13	0	1	12	2
RFA_00596	Y_RNA links to Rfam database...	0.00	0.00	0.00	0	5981	26	4	10	12	15
RFA_00599	Telomerase-vert links to Rfam database...	0.73	0.74	0.72	82	101361	60	10	22	28	29
RFA_00601	Telomerase-vert links to Rfam database...	0.42	0.46	0.39	52	99103	95	33	47	15	62
RFA_00602	Telomerase-vert links to Rfam database...	0.60	0.63	0.57	73	101347	77	23	32	22	43
RFA_00658	Hammerhead_1 links to Rfam database...	0.59	0.50	0.70	7	1118	5	0	3	2	7
RFA_00664	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	980	11	0	10	1	14
RFA_00667	Hammerhead_1 links to Rfam database...	0.30	0.29	0.33	4	978	8	1	7	0	10
RFA_00668	Hammerhead_1 links to Rfam database...	0.41	0.43	0.40	6	975	9	0	9	0	8
RFA_00672	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	897	6	0	6	0	13
RFA_00673	Hammerhead_1 links to Rfam database...	0.42	0.36	0.50	5	1118	6	0	5	1	9
RFA_00674	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	1116	13	0	12	1	14
RFA_00675	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	980	11	0	10	1	14
RFA_00677	Hammerhead_1 links to Rfam database...	0.42	0.43	0.43	6	976	9	0	8	1	8
RFA_00678	Hammerhead_1 links to Rfam database...	0.33	0.29	0.40	4	936	6	0	6	0	10
RFA_00680	Hammerhead_1 links to Rfam database...	0.74	0.71	0.77	10	1115	6	0	3	3	4
RFA_00704	Hammerhead_1 links to Rfam database...	0.32	0.21	0.50	3	984	4	0	3	1	11
RFA_00707	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	1028	7	1	6	0	14
RFA_00715	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	933	13	0	13	0	14
RFA_00717	Hammerhead_1 links to Rfam database...	0.64	0.64	0.64	9	889	5	0	5	0	5
RFA_00730	s2m links to Rfam database...	0.69	0.67	0.73	8	892	4	1	2	1	4
RFA_00731	s2m links to Rfam database...	1.00	1.00	1.00	12	891	1	0	0	1	0
RFA_00733	s2m links to Rfam database...	1.00	1.00	1.00	12	891	1	0	0	1	0
RFA_00734	s2m links to Rfam database...	0.78	0.75	0.82	9	892	3	0	2	1	3
RFA_00736	s2m links to Rfam database...	1.00	1.00	1.00	12	891	1	0	0	1	0
RFA_00737	s2m links to Rfam database...	1.00	1.00	1.00	12	891	1	0	0	1	0
RFA_00745	s2m links to Rfam database...	1.00	1.00	1.00	12	934	1	0	0	1	0
RFA_00749	s2m links to Rfam database...	1.00	1.00	1.00	12	891	1	0	0	1	0
RFA_00758	s2m links to Rfam database...	0.96	0.92	1.00	11	892	0	0	0	0	1
RFA_00762	s2m links to Rfam database...	0.64	0.67	0.62	8	890	5	1	4	0	4
RFA_00763	s2m links to Rfam database...	1.00	1.00	1.00	12	891	0	0	0	0	0
RFA_00764	s2m links to Rfam database...	1.00	1.00	1.00	12	891	1	0	0	1	0
RFA_00765	s2m links to Rfam database...	1.00	1.00	1.00	12	891	1	0	0	1	0
RFA_00786	Gammaretro_CES links to Rfam database...	0.55	0.56	0.55	18	5017	15	2	13	0	14
RFA_00791	Gammaretro_CES links to Rfam database...	0.89	0.84	0.93	27	5122	3	0	2	1	5
RFA_00792	Gammaretro_CES links to Rfam database...	0.94	0.94	0.94	30	5018	4	0	2	2	2
RFA_00801	Gammaretro_CES links to Rfam database...	0.81	0.78	0.83	25	5020	6	0	5	1	7
SPR_00007	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00009	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	0	0	0	0	0
SPR_00010	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00012	tRNA links to Rfam database...	0.23	0.25	0.23	5	2828	17	2	15	0	15
SPR_00013	tRNA links to Rfam database...	0.95	0.95	0.95	19	2830	1	0	1	0	1
SPR_00016	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00017	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00025	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00026	tRNA links to Rfam database...	0.68	0.71	0.65	15	2903	8	0	8	0	6
SPR_00027	tRNA links to Rfam database...	0.53	0.57	0.50	12	2902	13	3	9	1	9
SPR_00036	tRNA links to Rfam database...	1.00	1.00	1.00	20	2755	0	0	0	0	0
SPR_00045	tRNA links to Rfam database...	0.95	0.95	0.95	21	2828	1	0	1	0	1
SPR_00064	tRNA links to Rfam database...	0.54	0.57	0.52	12	2827	11	2	9	0	9
SPR_00065	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00066	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00068	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00070	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00074	tRNA links to Rfam database...	0.52	0.55	0.50	11	2828	12	2	9	1	9
SPR_00079	tRNA links to Rfam database...	1.00	1.00	1.00	19	2466	1	0	0	1	0
SPR_00086	tRNA links to Rfam database...	0.53	0.57	0.50	12	2826	12	4	8	0	9
SPR_00087	tRNA links to Rfam database...	0.51	0.55	0.48	11	2827	12	4	8	0	9
SPR_00088	tRNA links to Rfam database...	0.51	0.55	0.48	11	2827	12	4	8	0	9
SPR_00089	tRNA links to Rfam database...	0.51	0.55	0.48	11	2827	12	4	8	0	9
SPR_00090	tRNA links to Rfam database...	0.63	0.65	0.62	13	2829	8	4	4	0	7
SPR_00091	tRNA links to Rfam database...	0.51	0.55	0.48	11	2827	12	4	8	0	9
SPR_00095	tRNA links to Rfam database...	0.50	0.52	0.48	11	2827	12	4	8	0	10
SPR_00111	tRNA links to Rfam database...	0.95	0.90	1.00	19	2682	1	0	0	1	2
SPR_00112	tRNA links to Rfam database...	0.98	0.95	1.00	20	2681	1	0	0	1	1
SPR_00115	tRNA links to Rfam database...	0.85	0.81	0.89	17	2682	2	0	2	0	4
SPR_00117	tRNA links to Rfam database...	0.67	0.71	0.63	15	2826	9	1	8	0	6
SPR_00139	tRNA links to Rfam database...	0.98	0.95	1.00	20	2906	1	0	0	1	1
SPR_00153	tRNA links to Rfam database...	0.37	0.38	0.36	8	2904	14	3	11	0	13
SPR_00155	tRNA links to Rfam database...	0.98	0.95	1.00	20	2906	0	0	0	0	1
SPR_00156	tRNA links to Rfam database...	0.48	0.52	0.44	11	2901	14	5	9	0	10
SPR_00176	tRNA links to Rfam database...	0.51	0.55	0.48	11	2827	12	2	10	0	9
SPR_00177	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00178	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00191	tRNA links to Rfam database...	0.18	0.19	0.19	4	2829	17	4	13	0	17
SPR_00200	tRNA links to Rfam database...	0.74	0.76	0.73	16	2828	6	3	3	0	5
SPR_00224	tRNA links to Rfam database...	0.45	0.50	0.42	10	3717	19	5	9	5	10
SPR_00271	tRNA links to Rfam database...	0.52	0.57	0.48	12	2825	13	3	10	0	9
SPR_00273	tRNA links to Rfam database...	0.30	0.33	0.28	7	2825	18	2	16	0	14
SPR_00276	tRNA links to Rfam database...	0.98	0.95	1.00	20	2906	0	0	0	0	1
SPR_00277	tRNA links to Rfam database...	0.98	0.95	1.00	20	2906	0	0	0	0	1
SPR_00294	tRNA links to Rfam database...	0.55	0.57	0.55	12	2828	10	3	7	0	9
SPR_00295	tRNA links to Rfam database...	0.93	0.90	0.95	19	2755	2	0	1	1	2
SPR_00314	tRNA links to Rfam database...	0.98	0.95	1.00	20	2906	2	0	0	2	1
SPR_00315	tRNA links to Rfam database...	0.52	0.57	0.48	12	2901	15	2	11	2	9
SPR_00317	tRNA links to Rfam database...	0.52	0.55	0.50	11	2904	11	5	6	0	9
SPR_00318	tRNA links to Rfam database...	0.98	0.95	1.00	20	2906	2	0	0	2	1
SPR_00321	tRNA links to Rfam database...	1.00	1.00	1.00	21	2982	0	0	0	0	0
SPR_00333	tRNA links to Rfam database...	0.98	0.95	1.00	20	2755	0	0	0	0	1
SPR_00352	tRNA links to Rfam database...	0.73	0.76	0.70	16	2903	7	3	4	0	5
SPR_00353	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00357	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00358	tRNA links to Rfam database...	0.31	0.35	0.29	7	2902	17	5	12	0	13
SPR_00370	tRNA links to Rfam database...	0.24	0.24	0.25	5	2755	15	0	15	0	16
SPR_00386	tRNA links to Rfam database...	0.66	0.75	0.58	15	4160	13	4	7	2	5
SPR_00414	tRNA links to Rfam database...	0.95	0.90	1.00	19	3551	4	0	0	4	2
SPR_00415	tRNA links to Rfam database...	0.43	0.48	0.40	10	3545	19	5	10	4	11
SPR_00417	tRNA links to Rfam database...	0.58	0.55	0.63	12	3551	11	0	7	4	10
SPR_00418	tRNA links to Rfam database...	0.58	0.55	0.63	12	3551	11	0	7	4	10
SPR_00434	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00435	tRNA links to Rfam database...	0.76	0.76	0.76	16	2829	5	0	5	0	5
SPR_00436	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	2	0	0	2	1
SPR_00437	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	2	0	0	2	0
SPR_00438	tRNA links to Rfam database...	0.98	0.95	1.00	20	2755	0	0	0	0	1
SPR_00452	tRNA links to Rfam database...	0.54	0.57	0.52	12	2827	11	2	9	0	9
SPR_00455	tRNA links to Rfam database...	0.26	0.29	0.25	6	2826	18	6	12	0	15
SPR_00456	tRNA links to Rfam database...	0.53	0.57	0.50	12	2826	15	6	6	3	9
SPR_00476	tRNA links to Rfam database...	0.42	0.48	0.38	10	2749	16	3	13	0	11
SPR_00479	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00482	tRNA links to Rfam database...	0.98	0.95	1.00	20	2681	0	0	0	0	1
SPR_00483	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00487	tRNA links to Rfam database...	0.65	0.64	0.67	14	2680	7	0	7	0	8
SPR_00493	tRNA links to Rfam database...	0.68	0.68	0.68	15	2753	7	2	5	0	7
SPR_00496	tRNA links to Rfam database...	0.98	0.95	1.00	20	2755	0	0	0	0	1
SPR_00497	tRNA links to Rfam database...	0.42	0.48	0.38	10	2749	16	3	13	0	11
SPR_00502	tRNA links to Rfam database...	0.83	0.81	0.85	17	2906	3	0	3	0	4
SPR_00504	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	0	0	0	0	0
SPR_00505	tRNA links to Rfam database...	0.97	0.95	1.00	19	2907	0	0	0	0	1
SPR_00506	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00509	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00512	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00513	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00518	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00548	tRNA links to Rfam database...	0.50	0.52	0.48	11	3380	12	0	12	0	10
SPR_00557	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00561	tRNA links to Rfam database...	0.39	0.43	0.36	9	2825	16	1	15	0	12
SPR_00590	tRNA links to Rfam database...	0.53	0.60	0.48	12	2978	14	4	9	1	8
SPR_00593	tRNA links to Rfam database...	0.57	0.63	0.52	12	2752	12	4	7	1	7
SPR_00595	tRNA links to Rfam database...	0.50	0.52	0.48	11	2752	12	3	9	0	10
SPR_00598	tRNA links to Rfam database...	0.56	0.57	0.55	12	2981	12	2	8	2	9
SPR_00610	tRNA links to Rfam database...	0.53	0.57	0.50	12	2532	12	0	12	0	9
SPR_00620	tRNA links to Rfam database...	0.52	0.57	0.48	12	2978	14	5	8	1	9
SPR_00721	tRNA links to Rfam database...	0.48	0.52	0.44	11	2901	14	3	11	0	10
SPR_00722	tRNA links to Rfam database...	0.76	0.80	0.73	16	2904	6	4	2	0	4
SPR_00758	tRNA links to Rfam database...	0.29	0.33	0.27	7	2977	19	7	12	0	14
SPR_00760	tRNA links to Rfam database...	0.93	0.95	0.91	20	3548	4	0	2	2	1
SPR_00777	tRNA links to Rfam database...	0.49	0.55	0.44	11	2603	14	5	9	0	9
SPR_00867	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	2	0	0	2	0
SPR_00868	tRNA links to Rfam database...	0.77	0.81	0.74	17	2903	7	0	6	1	4
SPR_00943	tRNA links to Rfam database...	0.80	0.80	0.80	16	2536	4	1	3	0	4
SPR_00957	tRNA links to Rfam database...	0.78	0.76	0.80	16	2983	5	0	4	1	5
SPR_01040	tRNA links to Rfam database...	0.77	0.81	0.74	17	2752	7	0	6	1	4
SPR_01088	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	2	0	0	2	0
SPR_01095	tRNA links to Rfam database...	0.76	0.76	0.76	16	2829	6	0	5	1	5
SPR_01106	tRNA links to Rfam database...	0.52	0.52	0.52	11	2535	10	2	8	0	10
SPR_01117	tRNA links to Rfam database...	0.76	0.76	0.76	16	2982	6	0	5	1	5
SPR_01157	tRNA links to Rfam database...	0.77	0.81	0.74	17	2752	7	0	6	1	4
SRP_00006	Metazoa_SRP links to Rfam database...	0.85	0.84	0.86	85	45654	17	3	11	3	16
SRP_00008	Bacteria_small_SRP links to Rfam database...	0.58	0.60	0.58	15	2900	13	0	11	2	10
SRP_00011	Plant_SRP links to Rfam database...	0.69	0.69	0.69	72	46255	33	2	31	0	32
SRP_00015	Plant_SRP links to Rfam database...	0.83	0.80	0.86	79	46268	20	0	13	7	20
SRP_00020	Bacteria_small_SRP links to Rfam database...	0.86	0.88	0.85	29	5531	5	1	4	0	4
SRP_00024	Bacteria_large_SRP links to Rfam database...	0.78	0.80	0.76	70	37583	23	7	15	1	17
SRP_00026	Bacteria_large_SRP links to Rfam database...	0.72	0.69	0.74	61	36774	27	0	21	6	27
SRP_00027	Bacteria_large_SRP links to Rfam database...	0.76	0.77	0.75	67	37039	27	2	20	5	20
SRP_00030	Bacteria_large_SRP links to Rfam database...	0.78	0.81	0.76	71	36762	25	5	18	2	17
SRP_00031	Bacteria_large_SRP links to Rfam database...	0.68	0.70	0.67	62	36223	33	4	26	3	27
SRP_00037	Bacteria_large_SRP links to Rfam database...	0.67	0.68	0.67	59	36497	32	5	24	3	28
SRP_00038	Bacteria_small_SRP links to Rfam database...	0.17	0.18	0.18	6	5016	28	2	26	0	27
SRP_00042	Bacteria_small_SRP links to Rfam database...	0.45	0.48	0.43	12	3977	18	0	16	2	13
SRP_00044	Bacteria_small_SRP links to Rfam database...	0.77	0.75	0.80	24	6075	9	1	5	3	8
SRP_00046	Bacteria_small_SRP links to Rfam database...	0.97	0.97	0.97	31	4721	2	0	1	1	1
SRP_00050	Metazoa_SRP links to Rfam database...	0.96	0.94	0.98	93	44755	4	0	2	2	6
SRP_00051	Bacteria_small_SRP links to Rfam database...	0.30	0.30	0.30	9	5430	23	2	19	2	21
SRP_00054	Bacteria_small_SRP links to Rfam database...	0.22	0.22	0.23	7	5534	24	3	21	0	25
SRP_00057	Bacteria_small_SRP links to Rfam database...	0.74	0.74	0.74	26	6293	10	1	8	1	9
SRP_00058	Bacteria_small_SRP links to Rfam database...	0.90	0.91	0.89	31	5743	8	1	3	4	3
SRP_00066	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	45357	94	10	84	0	100
SRP_00072	Bacteria_small_SRP links to Rfam database...	0.30	0.31	0.30	9	6298	22	1	20	1	20
SRP_00074	Bacteria_small_SRP links to Rfam database...	0.39	0.41	0.36	12	6522	25	3	18	4	17
SRP_00075	Bacteria_small_SRP links to Rfam database...	0.57	0.59	0.56	20	5529	18	3	13	2	14
SRP_00077	Bacteria_small_SRP links to Rfam database...	0.70	0.70	0.70	26	6633	12	0	11	1	11
SRP_00081	Bacteria_small_SRP links to Rfam database...	0.69	0.74	0.64	23	5529	13	1	12	0	8
SRP_00084	Bacteria_small_SRP links to Rfam database...	0.87	0.88	0.86	30	5425	5	1	4	0	4
SRP_00086	Metazoa_SRP links to Rfam database...	0.58	0.60	0.57	60	44148	46	3	42	1	40
SRP_00088	Bacteria_large_SRP links to Rfam database...	0.69	0.71	0.67	63	34097	31	3	28	0	26
SRP_00089	Bacteria_large_SRP links to Rfam database...	0.72	0.73	0.72	66	35686	26	2	24	0	24
SRP_00090	Bacteria_large_SRP links to Rfam database...	0.27	0.27	0.27	24	35422	66	5	60	1	66
SRP_00094	Bacteria_small_SRP links to Rfam database...	0.84	0.88	0.81	21	4069	5	1	4	0	3
SRP_00095	Bacteria_small_SRP links to Rfam database...	0.85	0.88	0.81	22	3978	5	1	4	0	3
SRP_00098	Bacteria_small_SRP links to Rfam database...	0.76	0.78	0.74	29	6402	11	1	9	1	8
SRP_00102	Metazoa_SRP links to Rfam database...	0.77	0.75	0.78	76	44454	24	0	21	3	25
SRP_00103	Metazoa_SRP links to Rfam database...	0.17	0.17	0.17	17	45350	84	8	76	0	85
SRP_00105	Bacteria_small_SRP links to Rfam database...	1.00	1.00	1.00	34	5531	2	0	0	2	0
SRP_00107	Bacteria_small_SRP links to Rfam database...	0.12	0.16	0.11	3	3627	27	5	20	2	16
SRP_00121	Bacteria_small_SRP links to Rfam database...	0.80	0.80	0.80	20	4253	6	0	5	1	5
SRP_00128	Bacteria_small_SRP links to Rfam database...	0.76	0.81	0.73	29	6746	11	1	10	0	7
SRP_00132	Bacteria_small_SRP links to Rfam database...	0.65	0.69	0.63	20	4819	15	0	12	3	9
SRP_00134	Bacteria_large_SRP links to Rfam database...	0.51	0.55	0.48	16	5962	23	3	14	6	13
SRP_00141	Bacteria_small_SRP links to Rfam database...	0.92	0.93	0.90	38	6286	5	1	3	1	3
SRP_00152	Plant_SRP links to Rfam database...	0.70	0.68	0.71	70	45655	30	1	27	2	33
SRP_00161	Bacteria_small_SRP links to Rfam database...	0.33	0.36	0.31	8	2824	18	5	13	0	14
SRP_00162	Bacteria_small_SRP links to Rfam database...	0.89	0.91	0.88	21	2902	4	0	3	1	2
SRP_00163	Bacteria_small_SRP links to Rfam database...	0.76	0.81	0.72	21	3457	8	2	6	0	5
SRP_00164	Bacteria_small_SRP links to Rfam database...	0.96	0.97	0.94	34	6867	2	1	1	0	1
SRP_00170	Bacteria_small_SRP links to Rfam database...	0.55	0.56	0.54	14	4069	13	0	12	1	11
SRP_00171	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	45351	100	15	85	0	88
SRP_00174	Bacteria_large_SRP links to Rfam database...	0.77	0.80	0.73	69	38687	29	7	18	4	17
SRP_00178	Plant_SRP links to Rfam database...	0.80	0.77	0.82	79	45657	19	1	16	2	23
SRP_00179	Plant_SRP links to Rfam database...	0.76	0.75	0.77	79	45953	28	5	19	4	26
SRP_00181	Plant_SRP links to Rfam database...	0.36	0.35	0.37	36	45958	62	4	58	0	66
SRP_00182	Plant_SRP links to Rfam database...	0.67	0.65	0.68	66	45959	34	5	26	3	35
SRP_00184	Plant_SRP links to Rfam database...	0.76	0.75	0.78	75	45960	25	1	20	4	25
SRP_00188	Plant_SRP links to Rfam database...	0.16	0.16	0.16	13	31045	67	6	61	0	66
SRP_00194	Bacteria_small_SRP links to Rfam database...	0.77	0.81	0.74	17	3217	9	0	6	3	4
SRP_00200	Bacteria_small_SRP links to Rfam database...	0.93	0.94	0.92	34	6866	3	1	2	0	2
SRP_00209	Bacteria_small_SRP links to Rfam database...	0.78	0.81	0.76	22	4627	7	1	6	0	5
SRP_00213	Bacteria_small_SRP links to Rfam database...	0.66	0.68	0.65	17	4160	11	1	8	2	8
SRP_00215	Bacteria_small_SRP links to Rfam database...	0.82	0.80	0.83	20	3216	4	0	4	0	5
SRP_00227	Bacteria_small_SRP links to Rfam database...	0.95	0.97	0.94	30	5119	2	1	1	0	1
SRP_00228	Metazoa_SRP links to Rfam database...	0.98	0.98	0.98	93	45356	11	0	2	9	2
SRP_00231	Bacteria_small_SRP links to Rfam database...	0.87	0.88	0.86	30	5425	5	1	4	0	4
SRP_00233	Bacteria_small_SRP links to Rfam database...	1.00	1.00	1.00	33	5118	0	0	0	0	0
SRP_00243	Bacteria_small_SRP links to Rfam database...	0.97	0.94	1.00	29	5122	1	0	0	1	2
SRP_00244	Bacteria_small_SRP links to Rfam database...	0.51	0.51	0.51	20	6864	19	3	16	0	19
SRP_00250	Bacteria_small_SRP links to Rfam database...	0.78	0.81	0.76	29	6748	11	1	8	2	7
SRP_00251	Bacteria_small_SRP links to Rfam database...	0.75	0.78	0.72	28	6982	11	1	10	0	8
SRP_00266	Bacteria_small_SRP links to Rfam database...	0.72	0.72	0.72	21	4627	9	1	7	1	8
SRP_00268	Bacteria_small_SRP links to Rfam database...	0.93	0.93	0.93	25	4159	2	1	1	0	2
SRP_00269	Bacteria_small_SRP links to Rfam database...	0.56	0.58	0.54	19	5015	16	3	13	0	14
SRP_00270	Bacteria_small_SRP links to Rfam database...	0.43	0.45	0.41	14	4622	20	2	18	0	17
SRP_00271	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	3215	25	1	24	0	24
SRP_00273	Bacteria_small_SRP links to Rfam database...	0.91	0.93	0.90	37	6745	5	1	3	1	3
SRP_00274	Bacteria_small_SRP links to Rfam database...	0.96	0.97	0.95	37	6864	2	1	1	0	1
SRP_00295	Bacteria_small_SRP links to Rfam database...	0.96	0.97	0.95	37	6864	3	1	1	1	1
SRP_00303	Bacteria_small_SRP links to Rfam database...	0.84	0.88	0.80	28	6635	7	1	6	0	4
SRP_00308	Bacteria_large_SRP links to Rfam database...	0.73	0.74	0.72	65	36225	26	2	23	1	23
SRP_00310	Bacteria_small_SRP links to Rfam database...	0.87	0.87	0.87	20	2903	4	0	3	1	3
SRP_00312	Bacteria_small_SRP links to Rfam database...	0.32	0.33	0.31	9	4157	20	3	17	0	18
SRP_00315	Bacteria_small_SRP links to Rfam database...	0.87	0.87	0.87	20	2903	3	0	3	0	3
SRP_00317	Metazoa_SRP links to Rfam database...	0.88	0.86	0.91	84	45058	15	0	8	7	14
SRP_00318	Bacteria_small_SRP links to Rfam database...	0.87	0.87	0.87	20	2980	3	0	3	0	3
SRP_00325	Bacteria_small_SRP links to Rfam database...	1.00	1.00	1.00	33	4338	0	0	0	0	0
SRP_00326	Bacteria_small_SRP links to Rfam database...	0.53	0.55	0.52	17	5017	16	3	13	0	14
SRP_00333	Bacteria_small_SRP links to Rfam database...	0.86	0.85	0.88	29	5118	4	0	4	0	5
SRP_00337	Bacteria_large_SRP links to Rfam database...	0.77	0.76	0.78	69	35423	21	0	19	2	22
SRP_00338	Bacteria_small_SRP links to Rfam database...	0.97	0.97	0.97	35	5424	1	0	1	0	1
SRP_00341	Bacteria_small_SRP links to Rfam database...	0.47	0.48	0.45	15	4720	18	0	18	0	16
SRP_00342	Bacteria_small_SRP links to Rfam database...	0.55	0.56	0.54	14	3979	17	1	11	5	11
SRP_00347	Metazoa_SRP links to Rfam database...	0.76	0.78	0.75	75	46565	30	3	22	5	21
SRP_00350	Bacteria_small_SRP links to Rfam database...	0.74	0.74	0.74	20	3889	8	1	6	1	7
SRP_00356	Bacteria_small_SRP links to Rfam database...	0.83	0.80	0.86	24	5022	4	0	4	0	6
SRP_00357	Bacteria_small_SRP links to Rfam database...	0.96	0.97	0.95	35	5319	2	1	1	0	1
SRP_00358	Bacteria_small_SRP links to Rfam database...	0.96	0.97	0.94	34	6292	2	1	1	0	1
SRP_00367	Bacteria_small_SRP links to Rfam database...	0.96	0.97	0.94	34	6750	2	1	1	0	1
SRP_00368	Metazoa_SRP links to Rfam database...	0.90	0.90	0.91	88	43859	12	1	8	3	10
SRP_00369	Bacteria_small_SRP links to Rfam database...	0.96	0.97	0.94	34	5742	2	1	1	0	1
SRP_00383	Bacteria_small_SRP links to Rfam database...	0.41	0.42	0.42	10	3216	14	3	11	0	14
TMR_00017	tmRNA links to Rfam database...	0.56	0.55	0.58	56	67064	45	8	33	4	46
TMR_00018	tmRNA links to Rfam database...	0.41	0.42	0.40	39	64522	63	14	45	4	53
TMR_00038	tmRNA links to Rfam database...	0.12	0.13	0.11	14	71131	112	12	96	4	96
TMR_00042	tmRNA links to Rfam database...	0.34	0.35	0.34	34	62736	68	3	62	3	64
TMR_00046	tmRNA links to Rfam database...	0.27	0.28	0.26	27	62732	80	11	65	4	69
TMR_00048	tmRNA links to Rfam database...	0.23	0.24	0.22	23	64877	85	17	63	5	72
TMR_00080	tmRNA links to Rfam database...	0.61	0.61	0.61	59	70403	41	10	28	3	37
TMR_00082	tmRNA links to Rfam database...	0.67	0.67	0.68	64	67802	37	9	21	7	32
TMR_00123	tmRNA links to Rfam database...	0.44	0.45	0.44	45	66328	62	10	47	5	56
TMR_00137	tmRNA links to Rfam database...	0.16	0.17	0.15	15	60978	90	11	71	8	74
TMR_00142	tmRNA links to Rfam database...	0.49	0.51	0.48	52	70767	69	13	44	12	50
TMR_00207	tmRNA links to Rfam database...	0.30	0.30	0.30	31	72287	76	8	64	4	72
TMR_00257	tmRNA links to Rfam database...	0.27	0.28	0.26	27	67058	81	14	62	5	71
TMR_00271	tmRNA links to Rfam database...	0.63	0.62	0.65	56	64175	41	6	24	11	35
TMR_00332	tmRNA links to Rfam database...	0.48	0.48	0.48	48	67061	56	14	38	4	51
TMR_00366	tmRNA links to Rfam database...	0.46	0.46	0.46	46	67796	65	14	40	11	54
TMR_00378	tmRNA links to Rfam database...	0.29	0.30	0.28	29	67792	86	19	56	11	68
TMR_00399	tmRNA links to Rfam database...	0.27	0.29	0.26	27	64875	85	12	66	7	67
TMR_00404	tmRNA links to Rfam database...	0.37	0.40	0.34	37	67420	82	28	43	11	55
TMR_00427	tmRNA links to Rfam database...	0.27	0.28	0.26	27	67424	82	18	59	5	70
TMR_00443	tmRNA links to Rfam database...	0.53	0.50	0.55	52	67067	49	11	31	7	52
TMR_00451	tmRNA links to Rfam database...	0.18	0.19	0.17	17	63444	89	19	66	4	72
TMR_00458	tmRNA links to Rfam database...	0.49	0.49	0.48	46	63451	56	10	39	7	47
TMR_00469	tmRNA links to Rfam database...	0.34	0.34	0.33	34	64518	77	10	58	9	66
TMR_00472	tmRNA links to Rfam database...	0.48	0.49	0.47	48	64518	67	11	43	13	49
TMR_00519	tmRNA links to Rfam database...	0.18	0.20	0.17	19	63079	102	18	74	10	76
TMR_00520	tmRNA links to Rfam database...	0.48	0.48	0.48	48	63091	61	15	36	10	51
TMR_00522	tmRNA links to Rfam database...	0.38	0.39	0.38	38	63089	72	15	48	9	59
TMR_00528	tmRNA links to Rfam database...	0.30	0.29	0.30	28	63098	74	15	49	10	69
TMR_00540	tmRNA links to Rfam database...	0.45	0.44	0.47	46	73438	66	11	41	14	58
TMR_00568	tmRNA links to Rfam database...	0.35	0.34	0.36	34	60632	66	5	55	6	65
TMR_00571	tmRNA links to Rfam database...	0.61	0.60	0.63	59	60632	48	5	30	13	40
TMR_00580	tmRNA links to Rfam database...	0.67	0.65	0.70	65	60633	40	3	25	12	35
TMR_00584	tmRNA links to Rfam database...	0.61	0.60	0.62	58	60981	48	3	33	12	39
TMR_00586	tmRNA links to Rfam database...	0.48	0.49	0.47	48	60973	63	8	46	9	49
TMR_00616	tmRNA links to Rfam database...	0.33	0.34	0.32	34	67054	78	16	57	5	65
TMR_00699	tmRNA links to Rfam database...	0.55	0.53	0.57	54	67067	45	6	34	5	48
TMR_00702	tmRNA links to Rfam database...	0.45	0.44	0.46	44	67066	55	15	36	4	56
TMR_00703	tmRNA links to Rfam database...	0.49	0.49	0.49	49	67428	56	12	39	5	50

^top

Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.

Table of contents:

Overview

Performance plots

Performance of PETfold_pre2.0(20) - scored higher in this pairwise comparison

1. Total counts & total scores for PETfold_pre2.0(20)

2. Individual counts for PETfold_pre2.0(20) [ download as .csv ]

Performance of Fold - scored lower in this pairwise comparison

1. Total counts & total scores for Fold

2. Individual counts for Fold [ download as .csv ]