CompaRNA - on-line benchmarks of RNA structure prediction methods

Laboratory of Structural Bioinformatics @ Adam Mickiewicz University in Poznan

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Overview

Metric	PETfold_pre2.0(seed)		PPfold(20)
MCC	0.799	>	0.766
Average MCC ± 95% Confidence Intervals	0.839 ± 0.013	>	0.781 ± 0.019
Sensitivity	0.732	>	0.669
Positive Predictive Value	0.873	<	0.879
Total TP	24861	>	22719
Total TN	22383906	<	22386546
Total FP	6079	>	4596
Total FP CONTRA	1047	>	666
Total FP INCONS	2576	>	2459
Total FP COMP	2456	>	1471
Total FN	9121	<	11263
P-value	3.56938820447e-08

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Performance plots

Comparison of performance of PETfold_pre2.0(seed) and PPfold(20). Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data (individual counts for PETfold_pre2.0(seed) and PPfold(20)).
Average Matthews Correlation Coefficients (MCC) with 95% confidence intervals (CIs) were plotted for different RNA families, for which at least 3 members were present in the benchmarking dataset. 'n' denotes the number of MCCs used to calculate the average and CI. See tables below for raw data (individual counts for PETfold_pre2.0(seed) and PPfold(20)).
Comparison of average Matthews Correlation Coefficients (MCCs) for PETfold_pre2.0(seed) and PPfold(20). The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data (individual counts for PETfold_pre2.0(seed) and PPfold(20)).

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Performance of PETfold_pre2.0(seed) - scored higher in this pairwise comparison

1. Total counts & total scores for PETfold_pre2.0(seed)

Total Base Pair Counts
Total TP	24861
Total TN	22383906
Total FP	6079
Total FP CONTRA	1047
Total FP INCONS	2576
Total FP COMP	2456
Total FN	9121

Total Scores
MCC	0.799
Average MCC ± 95% Confidence Intervals	0.839 ± 0.013
Sensitivity	0.732
Positive Predictive Value	0.873
Nr of predictions	542

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2. Individual counts for PETfold_pre2.0(seed) [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00004	RNaseP_bact_a links to Rfam database...	0.72	0.62	0.83	60	47823	17	2	10	5	37
ASE_00005	RNaseP_bact_a links to Rfam database...	0.77	0.68	0.88	80	57879	16	4	7	5	37
ASE_00006	RNaseP_bact_a links to Rfam database...	0.72	0.63	0.81	59	47513	19	2	12	5	34
ASE_00007	RNaseP_bact_a links to Rfam database...	0.88	0.86	0.90	95	59579	16	4	7	5	15
ASE_00012	RNaseP_bact_a links to Rfam database...	0.78	0.72	0.85	88	73817	23	6	9	8	35
ASE_00018	RNaseP_bact_a links to Rfam database...	0.78	0.70	0.87	94	80493	19	5	9	5	40
ASE_00020	RNaseP_bact_a links to Rfam database...	0.66	0.54	0.82	68	73837	21	8	7	6	58
ASE_00021	RNaseP_bact_a links to Rfam database...	0.64	0.51	0.79	82	104092	30	7	15	8	78
ASE_00022	RNaseP_bact_b links to Rfam database...	0.83	0.76	0.90	94	82924	24	2	8	14	30
ASE_00028	RNaseP_bact_b links to Rfam database...	0.83	0.75	0.90	95	84561	22	2	8	12	31
ASE_00035	RNaseP_bact_a links to Rfam database...	0.83	0.78	0.88	92	70395	21	4	9	8	26
ASE_00037	RNaseP_bact_a links to Rfam database...	0.90	0.88	0.92	97	59234	14	4	5	5	13
ASE_00040	RNaseP_bact_a links to Rfam database...	0.81	0.73	0.91	97	78896	16	4	6	6	36
ASE_00041	RNaseP_bact_a links to Rfam database...	0.83	0.81	0.85	88	57527	20	4	11	5	20
ASE_00042	RNaseP_bact_a links to Rfam database...	0.70	0.60	0.81	87	89993	24	4	16	4	58
ASE_00044	RNaseP_bact_a links to Rfam database...	0.89	0.88	0.91	92	54514	14	4	5	5	13
ASE_00045	RNaseP_bact_b links to Rfam database...	0.82	0.81	0.82	65	47199	26	2	12	12	15
ASE_00064	RNaseP_bact_a links to Rfam database...	0.83	0.79	0.88	70	45371	15	4	6	5	19
ASE_00068	RNaseP_bact_a links to Rfam database...	0.63	0.55	0.72	47	37610	20	4	14	2	38
ASE_00074	RNaseP_bact_a links to Rfam database...	0.87	0.83	0.92	99	67788	14	4	5	5	20
ASE_00075	RNaseP_bact_a links to Rfam database...	0.66	0.52	0.83	85	108709	27	6	11	10	77
ASE_00077	RNaseP_bact_a links to Rfam database...	0.84	0.83	0.86	71	45067	16	5	7	4	15
ASE_00078	RNaseP_bact_a links to Rfam database...	0.91	0.88	0.94	73	42993	12	3	2	7	10
ASE_00080	RNaseP_bact_a links to Rfam database...	0.47	0.38	0.58	47	71550	40	4	30	6	76
ASE_00081	RNaseP_bact_a links to Rfam database...	0.82	0.75	0.89	73	49688	15	3	6	6	24
ASE_00082	RNaseP_bact_a links to Rfam database...	0.70	0.57	0.86	66	70423	20	3	8	9	50
ASE_00083	RNaseP_bact_a links to Rfam database...	0.76	0.65	0.88	72	62399	16	4	6	6	38
ASE_00084	RNaseP_bact_a links to Rfam database...	0.79	0.72	0.87	71	53546	16	4	7	5	28
ASE_00090	RNaseP_bact_a links to Rfam database...	0.80	0.72	0.89	73	55529	15	4	5	6	28
ASE_00092	RNaseP_bact_a links to Rfam database...	0.70	0.59	0.82	67	63464	21	6	9	6	46
ASE_00099	RNaseP_bact_a links to Rfam database...	0.87	0.83	0.92	99	64512	14	4	5	5	21
ASE_00104	RNaseP_bact_a links to Rfam database...	0.86	0.82	0.91	98	64153	15	4	6	5	21
ASE_00105	RNaseP_bact_a links to Rfam database...	0.58	0.50	0.67	56	64178	32	8	19	5	55
ASE_00107	RNaseP_bact_a links to Rfam database...	0.84	0.77	0.91	98	73045	15	4	6	5	29
ASE_00114	RNaseP_bact_b links to Rfam database...	0.66	0.65	0.68	50	45377	39	1	23	15	27
ASE_00115	RNaseP_bact_a links to Rfam database...	0.79	0.70	0.89	71	54535	14	4	5	5	30
ASE_00118	RNaseP_bact_a links to Rfam database...	0.74	0.65	0.85	66	60648	18	4	8	6	36
ASE_00119	RNaseP_bact_a links to Rfam database...	0.68	0.55	0.84	59	62765	15	5	6	4	49
ASE_00123	RNaseP_bact_a links to Rfam database...	0.73	0.64	0.83	54	38438	16	4	7	5	31
ASE_00125	RNaseP_bact_a links to Rfam database...	0.71	0.61	0.83	54	39275	16	4	7	5	34
ASE_00126	RNaseP_bact_a links to Rfam database...	0.86	0.84	0.87	69	40391	16	4	6	6	13
ASE_00128	RNaseP_bact_a links to Rfam database...	0.81	0.73	0.89	73	53219	14	4	5	5	27
ASE_00129	RNaseP_bact_a links to Rfam database...	0.76	0.66	0.89	73	62753	14	4	5	5	38
ASE_00131	RNaseP_bact_a links to Rfam database...	0.69	0.59	0.82	50	39279	16	4	7	5	35
ASE_00134	RNaseP_bact_a links to Rfam database...	0.78	0.73	0.84	69	50321	18	4	9	5	26
ASE_00135	RNaseP_bact_a links to Rfam database...	0.63	0.55	0.71	60	63106	27	6	18	3	49
ASE_00136	RNaseP_bact_a links to Rfam database...	0.83	0.78	0.88	72	48123	15	4	6	5	20
ASE_00137	RNaseP_bact_a links to Rfam database...	0.80	0.69	0.93	68	48443	10	3	2	5	30
ASE_00138	RNaseP_bact_a links to Rfam database...	0.86	0.84	0.87	68	40392	15	5	5	5	13
ASE_00140	RNaseP_bact_a links to Rfam database...	0.66	0.54	0.82	67	70794	21	9	6	6	58
ASE_00142	RNaseP_bact_a links to Rfam database...	0.83	0.77	0.90	94	67056	17	4	7	6	28
ASE_00146	RNaseP_bact_a links to Rfam database...	0.83	0.77	0.90	95	70770	16	4	7	5	29
ASE_00153	RNaseP_nuc links to Rfam database...	0.63	0.55	0.71	40	57574	20	3	13	4	33
ASE_00161	RNaseP_bact_b links to Rfam database...	0.84	0.83	0.85	72	53543	26	1	12	13	15
ASE_00163	RNaseP_bact_a links to Rfam database...	0.82	0.77	0.88	72	53219	15	5	5	5	21
ASE_00165	RNaseP_bact_a links to Rfam database...	0.79	0.67	0.92	68	52901	12	3	3	6	33
ASE_00170	RNaseP_bact_a links to Rfam database...	0.78	0.73	0.83	68	48746	19	5	9	5	25
ASE_00171	RNaseP_bact_a links to Rfam database...	0.82	0.76	0.89	71	48436	15	4	5	6	23
ASE_00172	RNaseP_bact_a links to Rfam database...	0.77	0.68	0.88	72	58914	15	5	5	5	34
ASE_00174	RNaseP_bact_a links to Rfam database...	0.69	0.60	0.79	65	60993	22	4	13	5	44
ASE_00175	RNaseP_bact_a links to Rfam database...	0.72	0.64	0.82	68	59948	20	5	10	5	39
ASE_00179	RNaseP_bact_a links to Rfam database...	0.83	0.80	0.86	67	44175	14	5	6	3	17
ASE_00180	RNaseP_bact_a links to Rfam database...	0.80	0.73	0.88	73	51277	15	5	5	5	27
ASE_00181	RNaseP_bact_a links to Rfam database...	0.71	0.62	0.80	66	57548	22	7	9	6	40
ASE_00182	RNaseP_bact_a links to Rfam database...	0.68	0.53	0.88	72	84173	15	4	6	5	64
ASE_00183	RNaseP_bact_a links to Rfam database...	0.75	0.65	0.88	73	61342	15	5	5	5	40
ASE_00184	RNaseP_bact_a links to Rfam database...	0.80	0.72	0.89	73	54533	14	3	6	5	29
ASE_00185	RNaseP_bact_a links to Rfam database...	0.69	0.54	0.87	69	73457	15	5	5	5	59
ASE_00186	RNaseP_bact_a links to Rfam database...	0.73	0.65	0.81	86	78897	26	4	16	6	46
ASE_00190	RNaseP_bact_b links to Rfam database...	0.76	0.69	0.85	62	45378	20	2	9	9	28
ASE_00197	RNaseP_bact_a links to Rfam database...	0.70	0.59	0.82	86	89148	24	4	15	5	59
ASE_00198	RNaseP_bact_a links to Rfam database...	0.80	0.72	0.89	73	52568	15	4	5	6	29
ASE_00203	RNaseP_bact_a links to Rfam database...	0.80	0.72	0.88	69	46587	14	4	5	5	27
ASE_00212	RNaseP_bact_a links to Rfam database...	0.69	0.57	0.84	85	93860	21	4	12	5	63
ASE_00214	RNaseP_bact_a links to Rfam database...	0.78	0.70	0.88	72	56198	16	5	5	6	31
ASE_00215	RNaseP_bact_a links to Rfam database...	0.60	0.49	0.72	49	48448	21	4	15	2	50
ASE_00216	RNaseP_bact_a links to Rfam database...	0.91	0.85	0.97	70	39268	8	2	0	6	12
ASE_00217	RNaseP_bact_a links to Rfam database...	0.86	0.82	0.89	74	40387	15	4	5	6	16
ASE_00221	RNaseP_bact_a links to Rfam database...	0.85	0.81	0.90	95	64514	16	4	7	5	22
ASE_00228	RNaseP_bact_a links to Rfam database...	0.83	0.76	0.90	65	46899	13	3	4	6	21
ASE_00229	RNaseP_bact_a links to Rfam database...	0.87	0.80	0.93	70	42411	10	2	3	5	17
ASE_00231	RNaseP_bact_a links to Rfam database...	0.72	0.63	0.83	60	47823	17	2	10	5	36
ASE_00232	RNaseP_bact_a links to Rfam database...	0.90	0.83	0.97	70	38431	7	2	0	5	14
ASE_00234	RNaseP_bact_a links to Rfam database...	0.66	0.53	0.82	68	75383	21	9	6	6	61
ASE_00238	RNaseP_bact_a links to Rfam database...	0.66	0.56	0.78	64	64179	24	7	11	6	50
ASE_00241	RNaseP_bact_a links to Rfam database...	0.85	0.83	0.88	72	43874	15	4	6	5	15
ASE_00242	RNaseP_bact_a links to Rfam database...	0.89	0.87	0.92	97	60969	15	4	5	6	15
ASE_00248	RNaseP_bact_a links to Rfam database...	0.88	0.85	0.92	97	62375	15	4	5	6	17
ASE_00254	RNaseP_bact_a links to Rfam database...	0.89	0.83	0.96	68	36785	9	2	1	6	14
ASE_00255	RNaseP_bact_a links to Rfam database...	0.66	0.59	0.75	77	74588	31	5	21	5	53
ASE_00257	RNaseP_bact_a links to Rfam database...	0.76	0.69	0.83	67	50959	19	5	9	5	30
ASE_00263	RNaseP_bact_a links to Rfam database...	0.73	0.60	0.88	72	70418	15	5	5	5	48
ASE_00267	RNaseP_bact_a links to Rfam database...	0.85	0.82	0.89	72	45069	14	3	6	5	16
ASE_00270	RNaseP_bact_a links to Rfam database...	0.59	0.45	0.77	57	72316	22	3	14	5	71
ASE_00274	RNaseP_bact_a links to Rfam database...	0.71	0.63	0.80	65	55530	21	6	10	5	38
ASE_00279	RNaseP_bact_a links to Rfam database...	0.77	0.69	0.86	70	53220	16	4	7	5	31
ASE_00280	RNaseP_bact_a links to Rfam database...	0.76	0.69	0.83	68	51921	19	5	9	5	30
ASE_00281	RNaseP_bact_a links to Rfam database...	0.84	0.81	0.88	71	44470	15	4	6	5	17
ASE_00282	RNaseP_bact_a links to Rfam database...	0.71	0.57	0.88	73	77732	15	5	5	5	54
ASE_00283	RNaseP_bact_a links to Rfam database...	0.77	0.67	0.88	72	61694	15	4	6	5	35
ASE_00284	RNaseP_bact_a links to Rfam database...	0.76	0.67	0.87	72	58228	16	6	5	5	36
ASE_00285	RNaseP_bact_a links to Rfam database...	0.72	0.59	0.88	72	68924	15	4	6	5	50
ASE_00286	RNaseP_bact_a links to Rfam database...	0.82	0.77	0.88	71	46584	15	4	6	5	21
ASE_00287	RNaseP_bact_a links to Rfam database...	0.70	0.62	0.78	64	54864	23	3	15	5	39
ASE_00292	RNaseP_bact_a links to Rfam database...	0.80	0.70	0.91	97	81703	16	4	6	6	41
ASE_00294	RNaseP_bact_a links to Rfam database...	0.71	0.57	0.90	97	114373	16	4	7	5	74
ASE_00296	RNaseP_bact_a links to Rfam database...	0.74	0.64	0.86	93	91698	20	5	10	5	52
ASE_00297	RNaseP_bact_a links to Rfam database...	0.72	0.64	0.80	63	52896	21	6	10	5	35
ASE_00298	RNaseP_bact_a links to Rfam database...	0.75	0.64	0.88	72	67446	15	6	4	5	41
ASE_00305	RNaseP_bact_b links to Rfam database...	0.85	0.84	0.86	71	54532	27	1	11	15	14
ASE_00318	RNaseP_bact_b links to Rfam database...	0.81	0.74	0.90	87	80103	25	2	8	15	31
ASE_00321	RNaseP_bact_b links to Rfam database...	0.87	0.84	0.89	74	54532	24	1	8	15	14
ASE_00328	RNaseP_bact_b links to Rfam database...	0.87	0.83	0.90	93	72668	24	2	8	14	19
ASE_00332	RNaseP_bact_a links to Rfam database...	0.81	0.72	0.92	99	81702	14	4	5	5	39
ASE_00335	RNaseP_bact_b links to Rfam database...	0.85	0.79	0.90	92	75364	26	2	8	16	24
ASE_00340	RNaseP_bact_a links to Rfam database...	0.80	0.73	0.89	62	45986	15	2	6	7	23
ASE_00342	RNaseP_bact_a links to Rfam database...	0.89	0.86	0.92	99	62373	14	4	5	5	16
ASE_00353	RNaseP_bact_a links to Rfam database...	0.77	0.68	0.88	73	57887	15	5	5	5	34
ASE_00361	RNaseP_bact_a links to Rfam database...	0.71	0.57	0.88	72	75384	15	4	6	5	55
ASE_00362	RNaseP_bact_a links to Rfam database...	0.84	0.79	0.89	72	48124	16	4	5	7	19
ASE_00363	RNaseP_bact_a links to Rfam database...	0.79	0.73	0.84	69	51278	18	3	10	5	25
ASE_00364	RNaseP_bact_a links to Rfam database...	0.74	0.66	0.84	69	54203	18	5	8	5	36
ASE_00366	RNaseP_bact_a links to Rfam database...	0.78	0.71	0.84	70	58570	18	6	7	5	28
ASE_00367	RNaseP_bact_a links to Rfam database...	0.87	0.85	0.89	73	42989	15	4	5	6	13
ASE_00369	RNaseP_bact_a links to Rfam database...	0.78	0.68	0.89	73	55863	15	4	5	6	34
ASE_00372	RNaseP_bact_a links to Rfam database...	0.79	0.71	0.88	71	51922	16	4	6	6	29
ASE_00374	RNaseP_bact_a links to Rfam database...	0.85	0.81	0.89	71	44770	15	4	5	6	17
ASE_00376	RNaseP_bact_a links to Rfam database...	0.76	0.68	0.87	71	56871	17	4	7	6	34
ASE_00377	RNaseP_bact_a links to Rfam database...	0.74	0.65	0.84	70	57547	18	5	8	5	37
ASE_00382	RNaseP_bact_a links to Rfam database...	0.87	0.86	0.89	72	41824	16	3	6	7	12
ASE_00383	RNaseP_bact_a links to Rfam database...	0.79	0.70	0.89	73	54533	15	4	5	6	32
ASE_00384	RNaseP_bact_a links to Rfam database...	0.82	0.77	0.87	71	48434	17	4	7	6	21
ASE_00386	RNaseP_bact_a links to Rfam database...	0.82	0.76	0.89	73	50321	14	4	5	5	23
ASE_00387	RNaseP_bact_a links to Rfam database...	0.70	0.62	0.80	64	55865	21	3	13	5	40
ASE_00388	RNaseP_bact_a links to Rfam database...	0.82	0.78	0.86	69	45673	18	4	7	7	20
ASE_00390	RNaseP_bact_a links to Rfam database...	0.84	0.82	0.86	70	42114	17	3	8	6	15
ASE_00393	RNaseP_bact_a links to Rfam database...	0.77	0.72	0.82	67	47813	21	4	11	6	26
ASE_00394	RNaseP_bact_a links to Rfam database...	0.78	0.71	0.86	66	46894	15	3	8	4	27
ASE_00395	RNaseP_bact_a links to Rfam database...	0.87	0.86	0.89	72	41535	15	4	5	6	12
ASE_00396	RNaseP_bact_a links to Rfam database...	0.85	0.84	0.86	70	41535	16	5	6	5	13
ASE_00397	RNaseP_bact_a links to Rfam database...	0.79	0.70	0.89	73	54533	15	4	5	6	32
ASE_00398	RNaseP_bact_a links to Rfam database...	0.76	0.67	0.86	70	55864	17	4	7	6	34
ASE_00400	RNaseP_bact_a links to Rfam database...	0.78	0.69	0.89	73	57888	15	4	5	6	33
ASE_00401	RNaseP_bact_a links to Rfam database...	0.69	0.54	0.87	68	76950	16	5	5	6	58
ASE_00402	RNaseP_bact_a links to Rfam database...	0.87	0.86	0.89	73	42404	15	3	6	6	12
ASE_00403	RNaseP_bact_a links to Rfam database...	0.78	0.68	0.89	73	55863	15	4	5	6	34
ASE_00404	RNaseP_bact_a links to Rfam database...	0.86	0.84	0.89	71	42991	15	4	5	6	14
ASE_00406	RNaseP_bact_a links to Rfam database...	0.83	0.78	0.89	73	48746	14	4	5	5	21
ASE_00411	RNaseP_bact_a links to Rfam database...	0.70	0.69	0.72	61	49370	29	10	14	5	28
ASE_00412	RNaseP_bact_a links to Rfam database...	0.64	0.57	0.72	60	58228	28	7	16	5	45
ASE_00413	RNaseP_bact_a links to Rfam database...	0.80	0.79	0.81	64	44472	22	7	8	7	17
ASE_00416	RNaseP_bact_a links to Rfam database...	0.78	0.72	0.84	91	77313	22	6	11	5	36
ASE_00419	RNaseP_bact_a links to Rfam database...	0.74	0.66	0.83	68	54864	19	7	7	5	35
ASE_00422	RNaseP_bact_a links to Rfam database...	0.79	0.71	0.88	67	46895	13	1	8	4	27
ASE_00423	RNaseP_bact_a links to Rfam database...	0.79	0.76	0.81	83	56851	25	4	15	6	26
ASE_00427	RNaseP_nuc links to Rfam database...	0.85	0.78	0.92	36	40716	9	0	3	6	10
ASE_00428	RNaseP_bact_a links to Rfam database...	0.78	0.73	0.84	91	76528	22	6	11	5	34
ASE_00430	RNaseP_bact_a links to Rfam database...	0.81	0.71	0.92	69	46896	11	2	4	5	28
ASE_00437	RNaseP_bact_a links to Rfam database...	0.60	0.53	0.68	72	79295	39	4	30	5	63
ASE_00441	RNaseP_bact_a links to Rfam database...	0.69	0.57	0.84	64	64185	18	4	8	6	48
ASE_00448	RNaseP_bact_a links to Rfam database...	0.86	0.84	0.88	94	64154	18	4	9	5	18
ASE_00451	RNaseP_bact_a links to Rfam database...	0.84	0.78	0.91	98	70768	15	4	6	5	27
CRW_00256	SSU_rRNA_bacteria links to Rfam database...	0.85	0.82	0.87	386	1192295	93	16	43	34	82
CRW_00326	SSU_rRNA_eukarya links to Rfam database...	0.66	0.63	0.69	315	1627654	205	15	126	64	187
CRW_00358	SSU_rRNA_eukarya links to Rfam database...	0.64	0.60	0.67	306	1674911	213	16	132	65	201
CRW_00548	5S_rRNA links to Rfam database...	0.90	0.87	0.94	33	7346	5	0	2	3	5
CRW_00552	5S_rRNA links to Rfam database...	0.91	0.85	0.97	33	7106	5	0	1	4	6
CRW_00555	5S_rRNA links to Rfam database...	0.91	0.85	0.97	34	7591	4	0	1	3	6
CRW_00567	5S_rRNA links to Rfam database...	0.92	0.88	0.97	35	7467	4	0	1	3	5
CRW_00570	5S_rRNA links to Rfam database...	0.96	0.92	1.00	34	6869	3	0	0	3	3
CRW_00573	5S_rRNA links to Rfam database...	0.85	0.80	0.91	32	7105	6	0	3	3	8
CRW_00590	SSU_rRNA_bacteria links to Rfam database...	0.87	0.84	0.89	381	1119327	104	6	42	56	71
CRW_00997	SSU_rRNA_bacteria links to Rfam database...	0.86	0.85	0.87	395	1135823	93	17	43	33	69
CRW_01484	5S_rRNA links to Rfam database...	0.91	0.87	0.94	34	7467	5	0	2	3	5
CRW_01485	5S_rRNA links to Rfam database...	0.91	0.87	0.94	34	7467	5	0	2	3	5
CRW_01487	5S_rRNA links to Rfam database...	0.89	0.85	0.92	35	7465	4	0	3	1	6
CRW_01489	5S_rRNA links to Rfam database...	0.91	0.87	0.94	34	7467	5	0	2	3	5
CRW_01491	5S_rRNA links to Rfam database...	0.89	0.84	0.95	36	8347	3	0	2	1	7
CRW_01492	5S_rRNA links to Rfam database...	0.85	0.79	0.92	33	7590	4	0	3	1	9
CRW_01494	5S_rRNA links to Rfam database...	0.88	0.83	0.94	33	7105	3	0	2	1	7
CRW_01497	5S_rRNA links to Rfam database...	0.87	0.80	0.94	32	7106	3	0	2	1	8
CRW_01498	5S_rRNA links to Rfam database...	0.87	0.81	0.92	35	8090	4	0	3	1	8
CRW_01499	5S_rRNA links to Rfam database...	0.73	0.68	0.78	28	7965	9	0	8	1	13
CRW_01500	5S_rRNA links to Rfam database...	0.90	0.87	0.94	33	7715	6	0	2	4	5
CRW_01501	5S_rRNA links to Rfam database...	0.82	0.76	0.89	34	8477	5	0	4	1	11
CRW_01508	5S_rRNA links to Rfam database...	0.86	0.81	0.92	34	7964	4	0	3	1	8
CRW_01532	5S_rRNA links to Rfam database...	0.96	0.95	0.97	35	7104	4	0	1	3	2
CRW_01533	5S_rRNA links to Rfam database...	0.96	0.95	0.97	35	7104	4	0	1	3	2
CRW_01534	5S_rRNA links to Rfam database...	0.96	0.95	0.97	35	7104	4	0	1	3	2
CRW_01535	5S_rRNA links to Rfam database...	0.96	0.95	0.97	35	7104	4	0	1	3	2
CRW_01536	5S_rRNA links to Rfam database...	0.96	0.95	0.97	35	6985	4	0	1	3	2
CRW_01537	5S_rRNA links to Rfam database...	0.96	0.95	0.97	35	7104	4	0	1	3	2
CRW_01539	5S_rRNA links to Rfam database...	0.96	0.95	0.97	35	7104	4	0	1	3	2
CRW_01540	5S_rRNA links to Rfam database...	0.96	0.95	0.97	35	7104	4	0	1	3	2
CRW_01541	5S_rRNA links to Rfam database...	0.99	0.97	1.00	36	7104	3	0	0	3	1
CRW_01542	5S_rRNA links to Rfam database...	0.96	0.95	0.97	35	7104	4	0	1	3	2
CRW_01544	5S_rRNA links to Rfam database...	0.96	0.95	0.97	35	7104	4	0	1	3	2
CRW_01548	5S_rRNA links to Rfam database...	0.96	0.95	0.97	35	6985	4	0	1	3	2
CRW_01555	5S_rRNA links to Rfam database...	0.96	0.95	0.97	35	9009	4	0	1	3	2
CRW_01556	5S_rRNA links to Rfam database...	0.96	0.95	0.97	35	7104	4	0	1	3	2
CRW_01557	5S_rRNA links to Rfam database...	0.96	0.95	0.97	35	7104	4	0	1	3	2
CRW_01559	5S_rRNA links to Rfam database...	0.96	0.95	0.97	35	7224	4	0	1	3	2
CRW_01562	5S_rRNA links to Rfam database...	0.96	0.95	0.97	35	7104	4	0	1	3	2
CRW_01563	5S_rRNA links to Rfam database...	0.81	0.81	0.81	30	6866	9	0	7	2	7
CRW_01566	5S_rRNA links to Rfam database...	0.99	0.97	1.00	36	7104	3	0	0	3	1
CRW_01568	5S_rRNA links to Rfam database...	0.96	0.95	0.97	35	7104	4	0	1	3	2
CRW_01569	5S_rRNA links to Rfam database...	0.96	0.95	0.97	35	7104	4	0	1	3	2
CRW_01570	5S_rRNA links to Rfam database...	0.96	0.95	0.97	35	7104	4	0	1	3	2
CRW_01572	5S_rRNA links to Rfam database...	0.81	0.81	0.81	30	6984	9	0	7	2	7
CRW_01573	5S_rRNA links to Rfam database...	0.96	0.95	0.97	35	7224	4	0	1	3	2
CRW_01578	5S_rRNA links to Rfam database...	0.96	0.95	0.97	35	7104	4	0	1	3	2
CRW_01580	5S_rRNA links to Rfam database...	0.96	0.95	0.97	35	7104	4	0	1	3	2
CRW_01581	5S_rRNA links to Rfam database...	0.96	0.95	0.97	35	7104	4	0	1	3	2
CRW_01583	5S_rRNA links to Rfam database...	0.96	0.95	0.97	35	7104	4	0	1	3	2
CRW_01584	5S_rRNA links to Rfam database...	0.96	0.95	0.97	35	7104	4	0	1	3	2
CRW_01590	5S_rRNA links to Rfam database...	0.99	0.97	1.00	36	7104	3	0	0	3	1
CRW_01593	5S_rRNA links to Rfam database...	0.96	0.95	0.97	35	7104	4	0	1	3	2
CRW_01595	5S_rRNA links to Rfam database...	0.96	0.95	0.97	35	8479	4	0	1	3	2
CRW_01599	5S_rRNA links to Rfam database...	0.96	0.95	0.97	35	7104	4	0	1	3	2
CRW_01603	5S_rRNA links to Rfam database...	0.99	0.97	1.00	36	7104	3	0	0	3	1
CRW_01605	5S_rRNA links to Rfam database...	0.96	0.95	0.97	35	7104	4	0	1	3	2
CRW_01606	5S_rRNA links to Rfam database...	0.96	0.95	0.97	35	7104	4	0	1	3	2
CRW_01608	5S_rRNA links to Rfam database...	0.96	0.95	0.97	35	8349	4	0	1	3	2
CRW_01616	5S_rRNA links to Rfam database...	0.96	0.95	0.97	35	7104	4	0	1	3	2
CRW_01617	5S_rRNA links to Rfam database...	0.96	0.95	0.97	35	7104	4	0	1	3	2
CRW_01620	5S_rRNA links to Rfam database...	0.96	0.95	0.97	35	6985	4	0	1	3	2
CRW_01621	5S_rRNA links to Rfam database...	0.99	0.97	1.00	36	7104	3	0	0	3	1
CRW_01623	5S_rRNA links to Rfam database...	0.96	0.95	0.97	35	7104	4	0	1	3	2
CRW_01625	5S_rRNA links to Rfam database...	0.96	0.95	0.97	35	7104	4	0	1	3	2
PDB_00012	mir-TAR links to Rfam database...	1.00	1.00	1.00	7	399	2	0	0	2	0
PDB_00070	tRNA links to Rfam database...	0.93	0.88	1.00	21	2829	1	0	0	1	3
PDB_00213	Gammaretro_CES links to Rfam database...	0.85	0.73	1.00	30	5020	0	0	0	0	11
PDB_00229	tRNA links to Rfam database...	0.96	0.91	1.00	21	2754	1	0	0	1	2
PDB_00327	tRNA links to Rfam database...	0.96	0.91	1.00	21	3060	1	0	0	1	2
PDB_00362	tRNA links to Rfam database...	0.98	0.95	1.00	21	2829	1	0	0	1	1
PDB_00402	tRNA links to Rfam database...	0.96	0.91	1.00	21	2754	1	0	0	1	2
PDB_00431	tRNA links to Rfam database...	0.95	0.90	1.00	18	2193	1	0	0	1	2
PDB_00474	tRNA links to Rfam database...	0.96	0.91	1.00	21	2680	1	0	0	1	2
PDB_00553	mir-TAR links to Rfam database...	1.00	1.00	1.00	11	454	0	0	0	0	0
PDB_00571	tRNA links to Rfam database...	0.85	0.80	0.91	20	3299	2	2	0	0	5
PDB_00667	tRNA links to Rfam database...	0.98	0.95	1.00	21	2829	1	0	0	1	1
PDB_00741	Entero_5_CRE links to Rfam database...	0.80	0.71	0.92	12	690	1	0	1	0	5
PDB_00810	s2m links to Rfam database...	0.87	0.76	1.00	13	1068	0	0	0	0	4
PDB_00828	Purine links to Rfam database...	0.84	0.78	0.91	21	2462	3	2	0	1	6
PDB_00829	Purine links to Rfam database...	0.87	0.83	0.91	20	2256	3	2	0	1	4
PDB_00876	HIV_FE links to Rfam database...	0.55	0.50	0.63	10	974	6	0	6	0	10
PDB_01002	tRNA links to Rfam database...	0.95	0.90	1.00	19	2756	3	0	0	3	2
PDB_01020	Purine links to Rfam database...	0.86	0.83	0.90	19	2257	4	2	0	2	4
PDB_01050	UnaL2 links to Rfam database...	0.48	0.38	0.63	5	622	4	0	3	1	8
PDB_01053	tRNA links to Rfam database...	1.00	1.00	1.00	16	1362	0	0	0	0	0
PDB_01073	SAM links to Rfam database...	0.77	0.68	0.88	23	4345	4	2	1	1	11
PDB_01114	TPP links to Rfam database...	0.82	0.74	0.91	20	2828	4	0	2	2	7
PDB_01120	SSU_rRNA_bacteria links to Rfam database...	0.80	0.73	0.86	387	1204680	102	10	51	41	140
PDB_01152	HIV_FS2 links to Rfam database...	0.80	0.71	0.91	10	550	1	0	1	0	4
PDB_01236	ykoK links to Rfam database...	0.86	0.78	0.95	42	11584	5	0	2	3	12
RFA_00389	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	3	0	0	3	0
RFA_00390	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	3	0	0	3	0
RFA_00391	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	3	0	0	3	0
RFA_00396	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	3	0	0	3	0
RFA_00402	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	3	0	0	3	0
RFA_00409	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	3	0	0	3	0
RFA_00416	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1470	3	0	0	3	0
RFA_00433	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	3	0	0	3	0
RFA_00434	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	3	0	0	3	0
RFA_00436	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	3	0	0	3	0
RFA_00440	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1470	3	0	0	3	0
RFA_00442	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	3	0	0	3	0
RFA_00444	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1525	3	0	0	3	0
RFA_00583	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4935	5	0	0	5	0
RFA_00584	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	2911	5	0	0	5	0
RFA_00585	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4836	5	0	0	5	0
RFA_00586	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	3901	2	0	0	2	0
RFA_00587	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4836	5	0	0	5	0
RFA_00588	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4545	5	0	0	5	0
RFA_00589	Y_RNA links to Rfam database...	0.97	0.93	1.00	14	4357	5	0	0	5	1
RFA_00594	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	2760	5	0	0	5	0
RFA_00596	Y_RNA links to Rfam database...	0.93	0.87	1.00	13	5982	5	0	0	5	2
RFA_00599	Telomerase-vert links to Rfam database...	0.88	0.86	0.90	95	101370	21	3	7	11	16
RFA_00601	Telomerase-vert links to Rfam database...	0.87	0.84	0.89	96	99127	25	3	9	13	18
RFA_00658	Hammerhead_1 links to Rfam database...	0.43	0.29	0.67	4	1122	3	0	2	1	10
RFA_00664	Hammerhead_1 links to Rfam database...	0.43	0.29	0.67	4	984	3	0	2	1	10
RFA_00667	Hammerhead_1 links to Rfam database...	0.43	0.29	0.67	4	984	3	0	2	1	10
RFA_00668	Hammerhead_1 links to Rfam database...	0.43	0.29	0.67	4	984	3	0	2	1	10
RFA_00672	Hammerhead_1 links to Rfam database...	0.45	0.31	0.67	4	897	3	0	2	1	9
RFA_00673	Hammerhead_1 links to Rfam database...	0.43	0.29	0.67	4	1122	3	0	2	1	10
RFA_00674	Hammerhead_1 links to Rfam database...	0.54	0.36	0.83	5	1122	2	0	1	1	9
RFA_00675	Hammerhead_1 links to Rfam database...	0.40	0.21	0.75	3	986	2	0	1	1	11
RFA_00677	Hammerhead_1 links to Rfam database...	0.43	0.29	0.67	4	984	3	0	2	1	10
RFA_00678	Hammerhead_1 links to Rfam database...	0.43	0.29	0.67	4	940	3	0	2	1	10
RFA_00680	Hammerhead_1 links to Rfam database...	0.43	0.29	0.67	4	1122	3	0	2	1	10
RFA_00704	Hammerhead_1 links to Rfam database...	0.43	0.29	0.67	4	984	3	0	2	1	10
RFA_00707	Hammerhead_1 links to Rfam database...	0.43	0.29	0.67	4	1029	3	0	2	1	10
RFA_00715	Hammerhead_1 links to Rfam database...	0.43	0.29	0.67	4	940	3	0	2	1	10
RFA_00717	Hammerhead_1 links to Rfam database...	0.56	0.43	0.75	6	895	2	0	2	0	8
RFA_00730	s2m links to Rfam database...	1.00	1.00	1.00	12	891	1	0	0	1	0
RFA_00731	s2m links to Rfam database...	1.00	1.00	1.00	12	891	1	0	0	1	0
RFA_00733	s2m links to Rfam database...	1.00	1.00	1.00	12	891	1	0	0	1	0
RFA_00734	s2m links to Rfam database...	1.00	1.00	1.00	12	891	1	0	0	1	0
RFA_00736	s2m links to Rfam database...	1.00	1.00	1.00	12	891	1	0	0	1	0
RFA_00737	s2m links to Rfam database...	1.00	1.00	1.00	12	891	1	0	0	1	0
RFA_00745	s2m links to Rfam database...	1.00	1.00	1.00	12	934	1	0	0	1	0
RFA_00749	s2m links to Rfam database...	1.00	1.00	1.00	12	891	1	0	0	1	0
RFA_00758	s2m links to Rfam database...	1.00	1.00	1.00	12	891	1	0	0	1	0
RFA_00762	s2m links to Rfam database...	1.00	1.00	1.00	12	891	1	0	0	1	0
RFA_00763	s2m links to Rfam database...	1.00	1.00	1.00	12	891	1	0	0	1	0
RFA_00764	s2m links to Rfam database...	1.00	1.00	1.00	12	891	1	0	0	1	0
RFA_00765	s2m links to Rfam database...	1.00	1.00	1.00	12	891	1	0	0	1	0
RFA_00786	Gammaretro_CES links to Rfam database...	0.97	0.94	1.00	30	5020	0	0	0	0	2
RFA_00791	Gammaretro_CES links to Rfam database...	0.97	0.94	1.00	30	5121	0	0	0	0	2
RFA_00792	Gammaretro_CES links to Rfam database...	0.97	0.94	1.00	30	5020	0	0	0	0	2
RFA_00801	Gammaretro_CES links to Rfam database...	0.97	0.94	1.00	30	5020	0	0	0	0	2
SPR_00007	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	1	0	0	1	0
SPR_00009	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	2	0	0	2	0
SPR_00010	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	1	0	0	1	0
SPR_00012	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	2	0	0	2	0
SPR_00013	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	2	0	0	2	0
SPR_00016	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	1	0	0	1	0
SPR_00017	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	1	0	0	1	0
SPR_00025	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	2	0	0	2	0
SPR_00026	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	1	0	0	1	0
SPR_00027	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	1	0	0	1	0
SPR_00036	tRNA links to Rfam database...	1.00	1.00	1.00	20	2755	2	0	0	2	0
SPR_00045	tRNA links to Rfam database...	0.98	0.95	1.00	21	2829	1	0	0	1	1
SPR_00064	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	1	0	0	1	0
SPR_00065	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	1	0	0	1	0
SPR_00066	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	1	0	0	1	0
SPR_00068	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	1	0	0	1	0
SPR_00070	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	1	0	0	1	0
SPR_00074	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	2	0	0	2	0
SPR_00079	tRNA links to Rfam database...	1.00	1.00	1.00	19	2466	2	0	0	2	0
SPR_00086	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	1	0	0	1	0
SPR_00087	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	2	0	0	2	0
SPR_00088	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	2	0	0	2	0
SPR_00089	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	2	0	0	2	0
SPR_00090	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	2	0	0	2	0
SPR_00091	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	2	0	0	2	0
SPR_00095	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	1	0	0	1	0
SPR_00111	tRNA links to Rfam database...	1.00	1.00	1.00	21	2680	1	0	0	1	0
SPR_00112	tRNA links to Rfam database...	1.00	1.00	1.00	21	2680	1	0	0	1	0
SPR_00115	tRNA links to Rfam database...	1.00	1.00	1.00	21	2680	1	0	0	1	0
SPR_00117	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	1	0	0	1	0
SPR_00139	tRNA links to Rfam database...	0.95	0.90	1.00	19	2907	2	0	0	2	2
SPR_00153	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	1	0	0	1	0
SPR_00155	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	1	0	0	1	0
SPR_00156	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	1	0	0	1	0
SPR_00176	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	2	0	0	2	0
SPR_00177	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	1	0	0	1	0
SPR_00178	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	1	0	0	1	0
SPR_00191	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	1	0	0	1	0
SPR_00200	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	1	0	0	1	0
SPR_00224	tRNA links to Rfam database...	1.00	1.00	1.00	20	3721	2	0	0	2	0
SPR_00271	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	1	0	0	1	0
SPR_00273	tRNA links to Rfam database...	0.95	0.95	0.95	20	2829	2	0	1	1	1
SPR_00276	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	1	0	0	1	0
SPR_00277	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	1	0	0	1	0
SPR_00294	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	1	0	0	1	0
SPR_00295	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	1	0	0	1	0
SPR_00314	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	1	0	0	1	0
SPR_00315	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	1	0	0	1	0
SPR_00317	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	2	0	0	2	0
SPR_00318	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	1	0	0	1	0
SPR_00321	tRNA links to Rfam database...	1.00	1.00	1.00	21	2982	1	0	0	1	0
SPR_00333	tRNA links to Rfam database...	0.98	0.95	1.00	20	2755	2	0	0	2	1
SPR_00352	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	1	0	0	1	0
SPR_00353	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	1	0	0	1	0
SPR_00357	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	1	0	0	1	0
SPR_00358	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	2	0	0	2	0
SPR_00370	tRNA links to Rfam database...	0.95	0.95	0.95	20	2754	2	0	1	1	1
SPR_00386	tRNA links to Rfam database...	1.00	1.00	1.00	20	4166	2	0	0	2	0
SPR_00414	tRNA links to Rfam database...	0.98	0.95	1.00	20	3550	2	0	0	2	1
SPR_00415	tRNA links to Rfam database...	0.98	0.95	1.00	20	3550	2	0	0	2	1
SPR_00417	tRNA links to Rfam database...	0.98	0.95	1.00	21	3549	1	0	0	1	1
SPR_00418	tRNA links to Rfam database...	0.98	0.95	1.00	21	3549	1	0	0	1	1
SPR_00434	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	1	0	0	1	0
SPR_00435	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	1	0	0	1	0
SPR_00436	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	1	0	0	1	0
SPR_00437	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	1	0	0	1	0
SPR_00438	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	1	0	0	1	0
SPR_00452	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	1	0	0	1	0
SPR_00455	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	1	0	0	1	0
SPR_00456	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	1	0	0	1	0
SPR_00476	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	1	0	0	1	0
SPR_00479	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	1	0	0	1	0
SPR_00482	tRNA links to Rfam database...	1.00	1.00	1.00	21	2680	1	0	0	1	0
SPR_00483	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	1	0	0	1	0
SPR_00487	tRNA links to Rfam database...	0.88	0.86	0.90	19	2680	3	0	2	1	3
SPR_00493	tRNA links to Rfam database...	0.98	0.95	1.00	21	2754	1	0	0	1	1
SPR_00496	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	1	0	0	1	0
SPR_00497	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	1	0	0	1	0
SPR_00502	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	1	0	0	1	0
SPR_00504	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	2	0	0	2	0
SPR_00505	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	2	0	0	2	0
SPR_00506	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	2	0	0	2	0
SPR_00509	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	2	0	0	2	0
SPR_00512	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	2	0	0	2	0
SPR_00513	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	2	0	0	2	0
SPR_00518	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	2	0	0	2	0
SPR_00548	tRNA links to Rfam database...	0.98	0.95	1.00	20	3383	2	0	0	2	1
SPR_00557	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	1	0	0	1	0
SPR_00561	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	1	0	0	1	0
SPR_00590	tRNA links to Rfam database...	1.00	1.00	1.00	20	2983	2	0	0	2	0
SPR_00593	tRNA links to Rfam database...	1.00	1.00	1.00	19	2756	3	0	0	3	0
SPR_00595	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	1	0	0	1	0
SPR_00598	tRNA links to Rfam database...	1.00	1.00	1.00	21	2982	1	0	0	1	0
SPR_00610	tRNA links to Rfam database...	1.00	1.00	1.00	21	2535	1	0	0	1	0
SPR_00620	tRNA links to Rfam database...	1.00	1.00	1.00	21	2982	1	0	0	1	0
SPR_00721	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	1	0	0	1	0
SPR_00722	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	2	0	0	2	0
SPR_00758	tRNA links to Rfam database...	1.00	1.00	1.00	21	2982	1	0	0	1	0
SPR_00760	tRNA links to Rfam database...	1.00	1.00	1.00	21	3549	1	0	0	1	0
SPR_00777	tRNA links to Rfam database...	1.00	1.00	1.00	20	2608	2	0	0	2	0
SPR_00867	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	1	0	0	1	0
SPR_00868	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	1	0	0	1	0
SPR_00943	tRNA links to Rfam database...	1.00	1.00	1.00	20	2536	2	0	0	2	0
SPR_00957	tRNA links to Rfam database...	1.00	1.00	1.00	21	2982	1	0	0	1	0
SPR_01040	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	1	0	0	1	0
SPR_01088	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	1	0	0	1	0
SPR_01095	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	1	0	0	1	0
SPR_01106	tRNA links to Rfam database...	1.00	1.00	1.00	21	2535	1	0	0	1	0
SPR_01117	tRNA links to Rfam database...	1.00	1.00	1.00	21	2982	1	0	0	1	0
SPR_01157	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	1	0	0	1	0
SRP_00006	Metazoa_SRP links to Rfam database...	0.95	0.92	0.99	93	45659	10	0	1	9	8
SRP_00008	Bacteria_small_SRP links to Rfam database...	0.94	0.88	1.00	22	2904	3	0	0	3	3
SRP_00011	Plant_SRP links to Rfam database...	0.82	0.79	0.86	82	46265	21	0	13	8	22
SRP_00015	Plant_SRP links to Rfam database...	0.87	0.84	0.91	83	46269	20	0	8	12	16
SRP_00020	Bacteria_small_SRP links to Rfam database...	0.74	0.64	0.88	21	5541	4	1	2	1	12
SRP_00038	Bacteria_small_SRP links to Rfam database...	0.76	0.61	0.95	20	5029	5	0	1	4	13
SRP_00042	Bacteria_small_SRP links to Rfam database...	0.80	0.72	0.90	18	3985	7	1	1	5	7
SRP_00044	Bacteria_small_SRP links to Rfam database...	0.74	0.63	0.87	20	6082	5	1	2	2	12
SRP_00050	Metazoa_SRP links to Rfam database...	0.97	0.97	0.98	96	44752	9	0	2	7	3
SRP_00051	Bacteria_small_SRP links to Rfam database...	0.65	0.53	0.80	16	5440	9	0	4	5	14
SRP_00054	Bacteria_small_SRP links to Rfam database...	0.77	0.63	0.95	20	5544	5	0	1	4	12
SRP_00057	Bacteria_small_SRP links to Rfam database...	0.66	0.51	0.86	18	6307	7	1	2	4	17
SRP_00058	Bacteria_small_SRP links to Rfam database...	0.73	0.62	0.88	21	5754	4	1	2	1	13
SRP_00066	Metazoa_SRP links to Rfam database...	0.94	0.91	0.98	91	45358	15	0	2	13	9
SRP_00072	Bacteria_small_SRP links to Rfam database...	0.69	0.59	0.81	17	6307	8	0	4	4	12
SRP_00074	Bacteria_small_SRP links to Rfam database...	0.47	0.41	0.55	12	6533	13	0	10	3	17
SRP_00075	Bacteria_small_SRP links to Rfam database...	0.31	0.26	0.38	9	5541	16	0	15	1	25
SRP_00077	Bacteria_small_SRP links to Rfam database...	0.42	0.32	0.55	12	6648	13	0	10	3	25
SRP_00084	Bacteria_small_SRP links to Rfam database...	0.73	0.62	0.88	21	5436	4	1	2	1	13
SRP_00086	Metazoa_SRP links to Rfam database...	0.97	0.96	0.98	96	44155	9	0	2	7	4
SRP_00094	Bacteria_small_SRP links to Rfam database...	0.82	0.75	0.90	18	4075	7	1	1	5	6
SRP_00095	Bacteria_small_SRP links to Rfam database...	0.83	0.76	0.90	19	3984	6	1	1	4	6
SRP_00098	Bacteria_small_SRP links to Rfam database...	0.70	0.54	0.91	20	6419	5	1	1	3	17
SRP_00102	Metazoa_SRP links to Rfam database...	0.96	0.95	0.98	96	44453	9	0	2	7	5
SRP_00103	Metazoa_SRP links to Rfam database...	0.95	0.93	0.98	95	45354	10	0	2	8	7
SRP_00105	Bacteria_small_SRP links to Rfam database...	0.75	0.59	0.95	20	5544	5	0	1	4	14
SRP_00107	Bacteria_small_SRP links to Rfam database...	0.49	0.53	0.45	10	3633	15	2	10	3	9
SRP_00121	Bacteria_small_SRP links to Rfam database...	0.77	0.72	0.82	18	4256	7	0	4	3	7
SRP_00128	Bacteria_small_SRP links to Rfam database...	0.71	0.56	0.91	20	6764	5	1	1	3	16
SRP_00141	Bacteria_small_SRP links to Rfam database...	0.65	0.49	0.87	20	6305	5	1	2	2	21
SRP_00152	Plant_SRP links to Rfam database...	0.89	0.83	0.95	86	45662	17	0	5	12	17
SRP_00161	Bacteria_small_SRP links to Rfam database...	0.79	0.77	0.81	17	2829	7	0	4	3	5
SRP_00163	Bacteria_small_SRP links to Rfam database...	0.75	0.69	0.82	18	3464	7	0	4	3	8
SRP_00164	Bacteria_small_SRP links to Rfam database...	0.45	0.20	1.00	7	6896	0	0	0	0	28
SRP_00170	Bacteria_small_SRP links to Rfam database...	0.80	0.72	0.90	18	4075	7	1	1	5	7
SRP_00171	Metazoa_SRP links to Rfam database...	0.98	0.97	1.00	85	45366	21	0	0	21	3
SRP_00178	Plant_SRP links to Rfam database...	0.91	0.86	0.96	88	45661	15	0	4	11	14
SRP_00179	Plant_SRP links to Rfam database...	0.90	0.85	0.96	89	45963	14	0	4	10	16
SRP_00181	Plant_SRP links to Rfam database...	0.85	0.81	0.89	83	45963	21	0	10	11	19
SRP_00182	Plant_SRP links to Rfam database...	0.88	0.84	0.91	85	45963	17	0	8	9	16
SRP_00184	Plant_SRP links to Rfam database...	0.84	0.80	0.89	80	45966	23	0	10	13	20
SRP_00188	Plant_SRP links to Rfam database...	0.86	0.82	0.90	65	31053	14	0	7	7	14
SRP_00194	Bacteria_small_SRP links to Rfam database...	0.49	0.43	0.56	9	3224	11	0	7	4	12
SRP_00200	Bacteria_small_SRP links to Rfam database...	0.69	0.53	0.90	19	6882	6	1	1	4	17
SRP_00209	Bacteria_small_SRP links to Rfam database...	0.82	0.74	0.91	20	4634	5	1	1	3	7
SRP_00213	Bacteria_small_SRP links to Rfam database...	0.80	0.72	0.90	18	4166	7	1	1	5	7
SRP_00215	Bacteria_small_SRP links to Rfam database...	0.77	0.72	0.82	18	3218	6	0	4	2	7
SRP_00228	Metazoa_SRP links to Rfam database...	0.97	0.96	0.98	91	45358	14	0	2	12	4
SRP_00231	Bacteria_small_SRP links to Rfam database...	0.73	0.62	0.88	21	5436	4	1	2	1	13
SRP_00233	Bacteria_small_SRP links to Rfam database...	0.72	0.61	0.87	20	5128	5	0	3	2	13
SRP_00243	Bacteria_small_SRP links to Rfam database...	0.74	0.61	0.90	19	5130	6	0	2	4	12
SRP_00244	Bacteria_small_SRP links to Rfam database...	0.63	0.46	0.86	18	6882	6	1	2	3	21
SRP_00250	Bacteria_small_SRP links to Rfam database...	0.67	0.53	0.86	19	6764	6	1	2	3	17
SRP_00251	Bacteria_small_SRP links to Rfam database...	0.69	0.53	0.90	19	7000	6	1	1	4	17
SRP_00266	Bacteria_small_SRP links to Rfam database...	0.38	0.34	0.43	10	4633	15	2	11	2	19
SRP_00268	Bacteria_small_SRP links to Rfam database...	0.80	0.70	0.90	19	4165	6	1	1	4	8
SRP_00269	Bacteria_small_SRP links to Rfam database...	0.69	0.58	0.83	19	5027	6	0	4	2	14
SRP_00270	Bacteria_small_SRP links to Rfam database...	0.70	0.58	0.86	18	4635	7	0	3	4	13
SRP_00271	Bacteria_small_SRP links to Rfam database...	0.85	0.83	0.87	20	3217	5	0	3	2	4
SRP_00273	Bacteria_small_SRP links to Rfam database...	0.66	0.50	0.87	20	6763	5	1	2	2	20
SRP_00274	Bacteria_small_SRP links to Rfam database...	0.71	0.55	0.91	21	6880	4	1	1	2	17
SRP_00295	Bacteria_small_SRP links to Rfam database...	0.64	0.47	0.86	18	6882	7	1	2	4	20
SRP_00303	Bacteria_small_SRP links to Rfam database...	0.73	0.59	0.90	19	6649	6	1	1	4	13
SRP_00310	Bacteria_small_SRP links to Rfam database...	0.78	0.78	0.78	18	2903	7	0	5	2	5
SRP_00312	Bacteria_small_SRP links to Rfam database...	0.80	0.70	0.90	19	4165	6	1	1	4	8
SRP_00315	Bacteria_small_SRP links to Rfam database...	0.76	0.78	0.75	18	2902	7	0	6	1	5
SRP_00317	Metazoa_SRP links to Rfam database...	0.95	0.94	0.96	92	45054	13	0	4	9	6
SRP_00318	Bacteria_small_SRP links to Rfam database...	0.76	0.78	0.75	18	2979	7	0	6	1	5
SRP_00325	Bacteria_small_SRP links to Rfam database...	0.72	0.61	0.87	20	4348	5	0	3	2	13
SRP_00326	Bacteria_small_SRP links to Rfam database...	0.70	0.58	0.86	18	5029	7	0	3	4	13
SRP_00333	Bacteria_small_SRP links to Rfam database...	0.71	0.59	0.87	20	5128	5	0	3	2	14
SRP_00338	Bacteria_small_SRP links to Rfam database...	0.76	0.61	0.96	22	5437	3	0	1	2	14
SRP_00341	Bacteria_small_SRP links to Rfam database...	0.42	0.35	0.50	11	4731	14	0	11	3	20
SRP_00342	Bacteria_small_SRP links to Rfam database...	0.80	0.72	0.90	18	3985	7	0	2	5	7
SRP_00347	Metazoa_SRP links to Rfam database...	0.94	0.93	0.96	89	46572	16	0	4	12	7
SRP_00350	Bacteria_small_SRP links to Rfam database...	0.82	0.74	0.91	20	3894	5	1	1	3	7
SRP_00357	Bacteria_small_SRP links to Rfam database...	0.71	0.56	0.91	20	5334	5	1	1	3	16
SRP_00358	Bacteria_small_SRP links to Rfam database...	0.66	0.51	0.86	18	6307	7	1	2	4	17
SRP_00367	Bacteria_small_SRP links to Rfam database...	0.68	0.51	0.90	18	6766	7	1	1	5	17
SRP_00368	Metazoa_SRP links to Rfam database...	0.96	0.95	0.98	93	43861	12	0	2	10	5
SRP_00369	Bacteria_small_SRP links to Rfam database...	0.68	0.51	0.90	18	5758	7	1	1	5	17
SRP_00383	Bacteria_small_SRP links to Rfam database...	0.84	0.75	0.95	18	3221	6	0	1	5	6
TMR_00017	tmRNA links to Rfam database...	0.72	0.62	0.84	63	67086	20	6	6	8	39
TMR_00018	tmRNA links to Rfam database...	0.65	0.59	0.72	54	64545	29	8	13	8	38
TMR_00038	tmRNA links to Rfam database...	0.64	0.52	0.79	57	71181	21	6	9	6	53
TMR_00042	tmRNA links to Rfam database...	0.68	0.60	0.78	59	62759	23	7	10	6	39
TMR_00046	tmRNA links to Rfam database...	0.47	0.42	0.53	40	62760	41	6	29	6	56
TMR_00048	tmRNA links to Rfam database...	0.68	0.61	0.76	58	64904	24	7	11	6	37
TMR_00080	tmRNA links to Rfam database...	0.55	0.49	0.63	47	70425	35	10	18	7	49
TMR_00082	tmRNA links to Rfam database...	0.59	0.51	0.68	49	67824	32	9	14	9	47
TMR_00123	tmRNA links to Rfam database...	0.72	0.61	0.84	62	66356	21	7	5	9	39
TMR_00137	tmRNA links to Rfam database...	0.63	0.56	0.71	50	61005	32	8	12	12	39
TMR_00142	tmRNA links to Rfam database...	0.63	0.54	0.74	55	70802	27	4	15	8	47
TMR_00207	tmRNA links to Rfam database...	0.68	0.57	0.80	59	72316	24	7	8	9	44
TMR_00257	tmRNA links to Rfam database...	0.72	0.62	0.82	61	67087	22	7	6	9	37
TMR_00271	tmRNA links to Rfam database...	0.62	0.54	0.71	49	64192	32	7	13	12	42
TMR_00332	tmRNA links to Rfam database...	0.69	0.60	0.80	59	67087	25	6	9	10	40
TMR_00366	tmRNA links to Rfam database...	0.63	0.54	0.74	54	67823	28	3	16	9	46
TMR_00378	tmRNA links to Rfam database...	0.65	0.55	0.77	53	67827	26	3	13	10	44
TMR_00399	tmRNA links to Rfam database...	0.66	0.59	0.74	55	64906	26	9	10	7	39
TMR_00404	tmRNA links to Rfam database...	0.58	0.51	0.66	47	67457	35	6	18	11	45
TMR_00427	tmRNA links to Rfam database...	0.68	0.60	0.76	58	67452	26	11	7	8	39
TMR_00443	tmRNA links to Rfam database...	0.72	0.62	0.84	64	67085	19	6	6	7	40
TMR_00451	tmRNA links to Rfam database...	0.56	0.51	0.63	45	63474	37	13	14	10	44
TMR_00458	tmRNA links to Rfam database...	0.66	0.58	0.75	54	63474	29	8	10	11	39
TMR_00469	tmRNA links to Rfam database...	0.71	0.61	0.84	61	64547	20	6	6	8	39
TMR_00472	tmRNA links to Rfam database...	0.68	0.59	0.79	57	64548	23	7	8	8	40
TMR_00519	tmRNA links to Rfam database...	0.64	0.57	0.72	54	63115	29	9	12	8	41
TMR_00520	tmRNA links to Rfam database...	0.68	0.60	0.79	59	63115	25	7	9	9	40
TMR_00522	tmRNA links to Rfam database...	0.65	0.56	0.75	54	63118	28	6	12	10	43
TMR_00528	tmRNA links to Rfam database...	0.64	0.56	0.74	54	63117	28	6	13	9	43
TMR_00540	tmRNA links to Rfam database...	0.65	0.56	0.75	58	73459	25	9	10	6	46
TMR_00568	tmRNA links to Rfam database...	0.76	0.65	0.89	64	60654	17	1	7	9	35
TMR_00571	tmRNA links to Rfam database...	0.78	0.67	0.92	66	60654	16	1	5	10	33
TMR_00580	tmRNA links to Rfam database...	0.74	0.61	0.90	61	60658	17	2	5	10	39
TMR_00584	tmRNA links to Rfam database...	0.77	0.65	0.91	63	61006	14	2	4	8	34
TMR_00586	tmRNA links to Rfam database...	0.74	0.64	0.85	62	61002	19	5	6	8	35
TMR_00616	tmRNA links to Rfam database...	0.65	0.56	0.75	55	67088	24	8	10	6	44
TMR_00699	tmRNA links to Rfam database...	0.68	0.58	0.80	59	67087	23	6	9	8	43
TMR_00702	tmRNA links to Rfam database...	0.64	0.55	0.74	55	67087	27	3	16	8	45
TMR_00703	tmRNA links to Rfam database...	0.68	0.60	0.79	59	67453	23	7	9	7	40

^top

Performance of PPfold(20) - scored lower in this pairwise comparison

1. Total counts & total scores for PPfold(20)

Total Base Pair Counts
Total TP	22719
Total TN	22386546
Total FP	4596
Total FP CONTRA	666
Total FP INCONS	2459
Total FP COMP	1471
Total FN	11263

Total Scores
MCC	0.766
Average MCC ± 95% Confidence Intervals	0.781 ± 0.019
Sensitivity	0.669
Positive Predictive Value	0.879
Nr of predictions	542

^top

2. Individual counts for PPfold(20) [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00004	RNaseP_bact_a links to Rfam database...	0.67	0.57	0.80	55	47826	17	1	13	3	42
ASE_00005	RNaseP_bact_a links to Rfam database...	0.75	0.64	0.88	75	57885	13	3	7	3	42
ASE_00006	RNaseP_bact_a links to Rfam database...	0.69	0.60	0.80	56	47516	16	1	13	2	37
ASE_00007	RNaseP_bact_a links to Rfam database...	0.85	0.81	0.89	89	59585	15	2	9	4	21
ASE_00012	RNaseP_bact_a links to Rfam database...	0.74	0.67	0.82	83	73819	24	4	14	6	40
ASE_00018	RNaseP_bact_a links to Rfam database...	0.77	0.66	0.90	89	80502	14	3	7	4	45
ASE_00020	RNaseP_bact_a links to Rfam database...	0.66	0.52	0.84	66	73841	19	6	7	6	60
ASE_00021	RNaseP_bact_a links to Rfam database...	0.55	0.44	0.69	70	104095	36	5	26	5	90
ASE_00022	RNaseP_bact_b links to Rfam database...	0.78	0.69	0.87	86	82929	22	1	12	9	38
ASE_00028	RNaseP_bact_b links to Rfam database...	0.75	0.64	0.87	81	84573	20	1	11	8	45
ASE_00035	RNaseP_bact_a links to Rfam database...	0.80	0.73	0.88	86	70402	19	1	11	7	32
ASE_00037	RNaseP_bact_a links to Rfam database...	0.86	0.81	0.92	89	59243	13	1	7	5	21
ASE_00040	RNaseP_bact_a links to Rfam database...	0.81	0.71	0.92	95	78900	10	3	5	2	38
ASE_00041	RNaseP_bact_a links to Rfam database...	0.83	0.81	0.85	88	57527	18	2	13	3	20
ASE_00042	RNaseP_bact_a links to Rfam database...	0.67	0.57	0.80	82	89998	23	2	18	3	63
ASE_00044	RNaseP_bact_a links to Rfam database...	0.89	0.86	0.92	90	54517	10	2	6	2	15
ASE_00045	RNaseP_bact_b links to Rfam database...	0.82	0.78	0.86	62	47206	17	1	9	7	18
ASE_00064	RNaseP_bact_a links to Rfam database...	0.80	0.73	0.87	65	45376	15	1	9	5	24
ASE_00068	RNaseP_bact_a links to Rfam database...	0.64	0.54	0.75	46	37614	17	5	10	2	39
ASE_00074	RNaseP_bact_a links to Rfam database...	0.85	0.78	0.93	93	67796	12	1	6	5	26
ASE_00075	RNaseP_bact_a links to Rfam database...	0.57	0.44	0.72	72	108711	35	5	23	7	90
ASE_00077	RNaseP_bact_a links to Rfam database...	0.85	0.83	0.88	71	45069	14	5	5	4	15
ASE_00078	RNaseP_bact_a links to Rfam database...	0.91	0.87	0.95	72	42995	11	1	3	7	11
ASE_00080	RNaseP_bact_a links to Rfam database...	0.44	0.35	0.57	43	71555	36	2	31	3	80
ASE_00081	RNaseP_bact_a links to Rfam database...	0.82	0.73	0.92	71	49693	9	2	4	3	26
ASE_00082	RNaseP_bact_a links to Rfam database...	0.65	0.52	0.81	60	70426	22	1	13	8	56
ASE_00083	RNaseP_bact_a links to Rfam database...	0.74	0.62	0.89	68	62405	13	3	5	5	42
ASE_00084	RNaseP_bact_a links to Rfam database...	0.74	0.65	0.84	64	53552	16	2	10	4	35
ASE_00090	RNaseP_bact_a links to Rfam database...	0.78	0.67	0.91	68	55536	11	2	5	4	33
ASE_00092	RNaseP_bact_a links to Rfam database...	0.65	0.53	0.79	60	63470	21	3	13	5	53
ASE_00099	RNaseP_bact_a links to Rfam database...	0.85	0.78	0.93	93	64520	11	2	5	4	27
ASE_00104	RNaseP_bact_a links to Rfam database...	0.83	0.76	0.91	91	64161	15	1	8	6	28
ASE_00105	RNaseP_bact_a links to Rfam database...	0.59	0.50	0.70	56	64181	29	6	18	5	55
ASE_00107	RNaseP_bact_a links to Rfam database...	0.83	0.75	0.92	95	73050	11	2	6	3	32
ASE_00114	RNaseP_bact_b links to Rfam database...	0.69	0.65	0.74	50	45383	26	1	17	8	27
ASE_00115	RNaseP_bact_a links to Rfam database...	0.78	0.68	0.88	69	54537	12	2	7	3	32
ASE_00118	RNaseP_bact_a links to Rfam database...	0.70	0.60	0.82	61	60652	17	2	11	4	41
ASE_00119	RNaseP_bact_a links to Rfam database...	0.70	0.54	0.92	58	62772	8	2	3	3	50
ASE_00123	RNaseP_bact_a links to Rfam database...	0.69	0.59	0.82	50	38442	14	3	8	3	35
ASE_00125	RNaseP_bact_a links to Rfam database...	0.72	0.60	0.87	53	39279	14	2	6	6	35
ASE_00126	RNaseP_bact_a links to Rfam database...	0.85	0.79	0.90	65	40398	13	2	5	6	17
ASE_00128	RNaseP_bact_a links to Rfam database...	0.80	0.70	0.92	70	53225	10	2	4	4	30
ASE_00129	RNaseP_bact_a links to Rfam database...	0.77	0.65	0.92	72	62757	9	3	3	3	39
ASE_00131	RNaseP_bact_a links to Rfam database...	0.75	0.62	0.90	53	39281	12	2	4	6	32
ASE_00134	RNaseP_bact_a links to Rfam database...	0.75	0.68	0.83	65	50325	16	1	12	3	30
ASE_00135	RNaseP_bact_a links to Rfam database...	0.63	0.54	0.74	59	63110	24	3	18	3	50
ASE_00136	RNaseP_bact_a links to Rfam database...	0.79	0.72	0.88	66	48130	12	2	7	3	26
ASE_00137	RNaseP_bact_a links to Rfam database...	0.80	0.66	0.97	65	48449	7	1	1	5	33
ASE_00138	RNaseP_bact_a links to Rfam database...	0.84	0.78	0.91	63	40401	10	2	4	4	18
ASE_00140	RNaseP_bact_a links to Rfam database...	0.69	0.55	0.86	69	70796	17	7	4	6	56
ASE_00142	RNaseP_bact_a links to Rfam database...	0.83	0.74	0.93	90	67064	13	2	5	6	32
ASE_00146	RNaseP_bact_a links to Rfam database...	0.81	0.71	0.92	88	70780	13	1	7	5	36
ASE_00153	RNaseP_nuc links to Rfam database...	0.43	0.37	0.50	27	57576	32	4	23	5	46
ASE_00161	RNaseP_bact_b links to Rfam database...	0.77	0.75	0.79	65	53546	24	1	16	7	22
ASE_00163	RNaseP_bact_a links to Rfam database...	0.83	0.76	0.90	71	53222	12	1	7	4	22
ASE_00165	RNaseP_bact_a links to Rfam database...	0.79	0.66	0.94	67	52904	10	2	2	6	34
ASE_00170	RNaseP_bact_a links to Rfam database...	0.73	0.66	0.80	61	48752	20	2	13	5	32
ASE_00171	RNaseP_bact_a links to Rfam database...	0.82	0.74	0.91	70	48439	11	3	4	4	24
ASE_00172	RNaseP_bact_a links to Rfam database...	0.77	0.65	0.91	69	58920	10	3	4	3	37
ASE_00174	RNaseP_bact_a links to Rfam database...	0.66	0.54	0.80	59	61001	18	3	12	3	50
ASE_00175	RNaseP_bact_a links to Rfam database...	0.73	0.64	0.85	68	59951	17	3	9	5	39
ASE_00179	RNaseP_bact_a links to Rfam database...	0.83	0.80	0.87	67	44176	15	5	5	5	17
ASE_00180	RNaseP_bact_a links to Rfam database...	0.78	0.69	0.88	69	51282	12	3	6	3	31
ASE_00181	RNaseP_bact_a links to Rfam database...	0.70	0.59	0.83	63	57554	18	4	9	5	43
ASE_00182	RNaseP_bact_a links to Rfam database...	0.69	0.53	0.90	72	84175	11	3	5	3	64
ASE_00183	RNaseP_bact_a links to Rfam database...	0.76	0.65	0.90	73	61344	12	2	6	4	40
ASE_00184	RNaseP_bact_a links to Rfam database...	0.77	0.68	0.87	69	54536	13	2	8	3	33
ASE_00185	RNaseP_bact_a links to Rfam database...	0.68	0.52	0.90	66	73463	12	3	4	5	62
ASE_00186	RNaseP_bact_a links to Rfam database...	0.69	0.60	0.80	79	78904	24	3	17	4	53
ASE_00190	RNaseP_bact_b links to Rfam database...	0.75	0.64	0.87	58	45384	12	1	8	3	32
ASE_00197	RNaseP_bact_a links to Rfam database...	0.67	0.55	0.81	80	89154	24	2	17	5	65
ASE_00198	RNaseP_bact_a links to Rfam database...	0.80	0.70	0.92	71	52573	9	1	5	3	31
ASE_00203	RNaseP_bact_a links to Rfam database...	0.80	0.72	0.90	69	46588	13	3	5	5	27
ASE_00212	RNaseP_bact_a links to Rfam database...	0.66	0.53	0.83	78	93867	20	2	14	4	70
ASE_00214	RNaseP_bact_a links to Rfam database...	0.77	0.66	0.91	68	56205	11	3	4	4	35
ASE_00215	RNaseP_bact_a links to Rfam database...	0.62	0.46	0.82	46	48460	13	2	8	3	53
ASE_00216	RNaseP_bact_a links to Rfam database...	0.91	0.84	0.99	69	39270	5	1	0	4	13
ASE_00217	RNaseP_bact_a links to Rfam database...	0.83	0.77	0.91	69	40394	11	2	5	4	21
ASE_00221	RNaseP_bact_a links to Rfam database...	0.85	0.78	0.93	91	64522	10	1	6	3	26
ASE_00228	RNaseP_bact_a links to Rfam database...	0.75	0.69	0.83	59	46900	16	2	10	4	27
ASE_00229	RNaseP_bact_a links to Rfam database...	0.88	0.79	0.97	69	42415	5	2	0	3	18
ASE_00231	RNaseP_bact_a links to Rfam database...	0.67	0.57	0.77	55	47824	22	1	15	6	41
ASE_00232	RNaseP_bact_a links to Rfam database...	0.89	0.82	0.97	69	38432	6	1	1	4	15
ASE_00234	RNaseP_bact_a links to Rfam database...	0.66	0.53	0.83	68	75384	20	6	8	6	61
ASE_00238	RNaseP_bact_a links to Rfam database...	0.67	0.56	0.80	64	64181	22	5	11	6	50
ASE_00241	RNaseP_bact_a links to Rfam database...	0.83	0.78	0.87	68	43878	14	1	9	4	19
ASE_00242	RNaseP_bact_a links to Rfam database...	0.86	0.82	0.90	92	60973	15	1	9	5	20
ASE_00248	RNaseP_bact_a links to Rfam database...	0.86	0.81	0.91	92	62380	13	1	8	4	22
ASE_00254	RNaseP_bact_a links to Rfam database...	0.85	0.77	0.94	63	36789	8	2	2	4	19
ASE_00255	RNaseP_bact_a links to Rfam database...	0.62	0.55	0.71	72	74589	32	4	26	2	58
ASE_00257	RNaseP_bact_a links to Rfam database...	0.73	0.65	0.82	63	50963	17	4	10	3	34
ASE_00263	RNaseP_bact_a links to Rfam database...	0.70	0.57	0.87	68	70422	14	3	7	4	52
ASE_00267	RNaseP_bact_a links to Rfam database...	0.84	0.77	0.91	68	45075	13	2	5	6	20
ASE_00270	RNaseP_bact_a links to Rfam database...	0.58	0.43	0.79	55	72320	19	2	13	4	73
ASE_00274	RNaseP_bact_a links to Rfam database...	0.68	0.60	0.78	62	55531	21	5	13	3	41
ASE_00279	RNaseP_bact_a links to Rfam database...	0.79	0.69	0.90	70	53223	11	3	5	3	31
ASE_00280	RNaseP_bact_a links to Rfam database...	0.74	0.66	0.82	65	51924	17	3	11	3	33
ASE_00281	RNaseP_bact_a links to Rfam database...	0.81	0.75	0.87	66	44475	12	3	7	2	22
ASE_00282	RNaseP_bact_a links to Rfam database...	0.70	0.54	0.90	69	77738	12	2	6	4	58
ASE_00283	RNaseP_bact_a links to Rfam database...	0.73	0.63	0.86	67	61698	14	2	9	3	40
ASE_00284	RNaseP_bact_a links to Rfam database...	0.77	0.66	0.91	71	58233	11	4	3	4	37
ASE_00285	RNaseP_bact_a links to Rfam database...	0.70	0.55	0.91	67	68932	11	2	5	4	55
ASE_00286	RNaseP_bact_a links to Rfam database...	0.81	0.73	0.89	67	46590	12	2	6	4	25
ASE_00287	RNaseP_bact_a links to Rfam database...	0.69	0.60	0.79	62	54868	20	1	15	4	41
ASE_00292	RNaseP_bact_a links to Rfam database...	0.72	0.62	0.83	86	81707	20	2	15	3	52
ASE_00294	RNaseP_bact_a links to Rfam database...	0.72	0.57	0.92	97	114375	13	2	7	4	74
ASE_00296	RNaseP_bact_a links to Rfam database...	0.72	0.61	0.86	88	91704	18	4	10	4	57
ASE_00297	RNaseP_bact_a links to Rfam database...	0.68	0.58	0.79	57	52903	19	4	11	4	41
ASE_00298	RNaseP_bact_a links to Rfam database...	0.72	0.61	0.85	69	67447	15	3	9	3	44
ASE_00305	RNaseP_bact_b links to Rfam database...	0.82	0.78	0.86	66	54538	22	1	10	11	19
ASE_00318	RNaseP_bact_b links to Rfam database...	0.75	0.66	0.85	78	80108	21	1	13	7	40
ASE_00321	RNaseP_bact_b links to Rfam database...	0.77	0.74	0.81	65	54535	23	1	14	8	23
ASE_00328	RNaseP_bact_b links to Rfam database...	0.81	0.75	0.88	84	72675	19	1	11	7	28
ASE_00332	RNaseP_bact_a links to Rfam database...	0.78	0.67	0.91	92	81709	12	3	6	3	46
ASE_00335	RNaseP_bact_b links to Rfam database...	0.77	0.70	0.85	81	75371	25	1	13	11	35
ASE_00340	RNaseP_bact_a links to Rfam database...	0.75	0.67	0.85	57	45989	17	1	9	7	28
ASE_00342	RNaseP_bact_a links to Rfam database...	0.89	0.83	0.96	95	62382	9	1	3	5	20
ASE_00353	RNaseP_bact_a links to Rfam database...	0.75	0.64	0.88	68	57893	14	2	7	5	39
ASE_00361	RNaseP_bact_a links to Rfam database...	0.69	0.53	0.89	67	75391	13	3	5	5	60
ASE_00362	RNaseP_bact_a links to Rfam database...	0.80	0.71	0.89	65	48132	14	2	6	6	26
ASE_00363	RNaseP_bact_a links to Rfam database...	0.76	0.68	0.84	64	51284	17	2	10	5	30
ASE_00364	RNaseP_bact_a links to Rfam database...	0.76	0.66	0.87	69	54206	15	3	7	5	36
ASE_00366	RNaseP_bact_a links to Rfam database...	0.76	0.67	0.87	66	58577	13	3	7	3	32
ASE_00367	RNaseP_bact_a links to Rfam database...	0.85	0.79	0.91	68	42996	11	2	5	4	18
ASE_00369	RNaseP_bact_a links to Rfam database...	0.79	0.69	0.90	74	55863	13	1	7	5	33
ASE_00372	RNaseP_bact_a links to Rfam database...	0.76	0.65	0.88	65	51929	15	1	8	6	35
ASE_00374	RNaseP_bact_a links to Rfam database...	0.86	0.80	0.93	70	44775	8	2	3	3	18
ASE_00376	RNaseP_bact_a links to Rfam database...	0.73	0.63	0.85	66	56875	15	1	11	3	39
ASE_00377	RNaseP_bact_a links to Rfam database...	0.76	0.65	0.88	70	57550	13	3	7	3	37
ASE_00382	RNaseP_bact_a links to Rfam database...	0.83	0.80	0.87	67	41828	16	2	8	6	17
ASE_00383	RNaseP_bact_a links to Rfam database...	0.77	0.66	0.90	69	54538	13	1	7	5	36
ASE_00384	RNaseP_bact_a links to Rfam database...	0.81	0.74	0.89	68	48440	13	2	6	5	24
ASE_00386	RNaseP_bact_a links to Rfam database...	0.79	0.71	0.88	68	50326	12	2	7	3	28
ASE_00387	RNaseP_bact_a links to Rfam database...	0.71	0.62	0.83	64	55868	17	2	11	4	40
ASE_00388	RNaseP_bact_a links to Rfam database...	0.80	0.73	0.87	65	45678	16	1	9	6	24
ASE_00390	RNaseP_bact_a links to Rfam database...	0.85	0.80	0.89	68	42119	11	2	6	3	17
ASE_00393	RNaseP_bact_a links to Rfam database...	0.74	0.68	0.82	63	47818	19	1	13	5	30
ASE_00394	RNaseP_bact_a links to Rfam database...	0.83	0.74	0.92	69	46896	10	2	4	4	24
ASE_00395	RNaseP_bact_a links to Rfam database...	0.83	0.79	0.87	66	41540	13	2	8	3	18
ASE_00396	RNaseP_bact_a links to Rfam database...	0.86	0.83	0.90	69	41539	12	3	5	4	14
ASE_00397	RNaseP_bact_a links to Rfam database...	0.75	0.64	0.88	67	54539	15	3	6	6	38
ASE_00398	RNaseP_bact_a links to Rfam database...	0.74	0.63	0.87	65	55870	13	1	9	3	39
ASE_00400	RNaseP_bact_a links to Rfam database...	0.79	0.67	0.92	71	57893	12	1	5	6	35
ASE_00401	RNaseP_bact_a links to Rfam database...	0.67	0.51	0.88	64	76955	13	2	7	4	62
ASE_00402	RNaseP_bact_a links to Rfam database...	0.85	0.80	0.89	68	42410	12	2	6	4	17
ASE_00403	RNaseP_bact_a links to Rfam database...	0.79	0.67	0.92	72	55867	12	1	5	6	35
ASE_00404	RNaseP_bact_a links to Rfam database...	0.85	0.80	0.89	68	42995	14	4	4	6	17
ASE_00406	RNaseP_bact_a links to Rfam database...	0.79	0.72	0.86	68	48749	14	2	9	3	26
ASE_00411	RNaseP_bact_a links to Rfam database...	0.70	0.67	0.72	60	49372	27	7	16	4	29
ASE_00412	RNaseP_bact_a links to Rfam database...	0.62	0.54	0.71	57	58231	28	5	18	5	48
ASE_00413	RNaseP_bact_a links to Rfam database...	0.76	0.73	0.79	59	44476	23	4	12	7	22
ASE_00416	RNaseP_bact_a links to Rfam database...	0.74	0.66	0.82	84	77319	23	4	14	5	43
ASE_00419	RNaseP_bact_a links to Rfam database...	0.72	0.61	0.84	63	54871	16	5	7	4	40
ASE_00422	RNaseP_bact_a links to Rfam database...	0.82	0.73	0.91	69	46895	13	1	6	6	25
ASE_00423	RNaseP_bact_a links to Rfam database...	0.75	0.71	0.80	77	56857	23	3	16	4	32
ASE_00427	RNaseP_nuc links to Rfam database...	0.35	0.30	0.40	14	40720	29	9	12	8	32
ASE_00428	RNaseP_bact_a links to Rfam database...	0.75	0.68	0.83	85	76533	21	4	14	3	40
ASE_00430	RNaseP_bact_a links to Rfam database...	0.75	0.66	0.85	64	46896	14	1	10	3	33
ASE_00437	RNaseP_bact_a links to Rfam database...	0.58	0.50	0.69	67	79304	33	1	29	3	68
ASE_00441	RNaseP_bact_a links to Rfam database...	0.70	0.57	0.86	64	64187	13	3	7	3	48
ASE_00448	RNaseP_bact_a links to Rfam database...	0.83	0.79	0.87	88	64160	15	3	10	2	24
ASE_00451	RNaseP_bact_a links to Rfam database...	0.81	0.73	0.91	91	70776	12	1	8	3	34
CRW_00256	SSU_rRNA_bacteria links to Rfam database...	0.82	0.78	0.87	363	1192324	70	13	40	17	105
CRW_00326	SSU_rRNA_eukarya links to Rfam database...	0.64	0.56	0.73	280	1627728	143	17	85	41	222
CRW_00358	SSU_rRNA_eukarya links to Rfam database...	0.56	0.49	0.64	246	1674980	178	15	124	39	261
CRW_00548	5S_rRNA links to Rfam database...	0.90	0.82	1.00	31	7350	3	0	0	3	7
CRW_00552	5S_rRNA links to Rfam database...	0.79	0.69	0.90	27	7110	5	0	3	2	12
CRW_00555	5S_rRNA links to Rfam database...	0.82	0.68	1.00	27	7599	2	0	0	2	13
CRW_00567	5S_rRNA links to Rfam database...	0.85	0.73	1.00	29	7474	2	0	0	2	11
CRW_00570	5S_rRNA links to Rfam database...	0.96	0.92	1.00	34	6869	3	0	0	3	3
CRW_00573	5S_rRNA links to Rfam database...	0.79	0.68	0.93	27	7111	4	0	2	2	13
CRW_00590	SSU_rRNA_bacteria links to Rfam database...	0.85	0.81	0.90	367	1119348	69	4	37	28	85
CRW_00997	SSU_rRNA_bacteria links to Rfam database...	0.83	0.81	0.86	374	1135845	75	15	44	16	90
CRW_01484	5S_rRNA links to Rfam database...	0.88	0.79	0.97	31	7471	2	0	1	1	8
CRW_01485	5S_rRNA links to Rfam database...	0.92	0.87	0.97	34	7468	5	0	1	4	5
CRW_01487	5S_rRNA links to Rfam database...	0.88	0.80	0.97	33	7469	2	0	1	1	8
CRW_01489	5S_rRNA links to Rfam database...	0.93	0.87	1.00	34	7469	3	0	0	3	5
CRW_01491	5S_rRNA links to Rfam database...	0.90	0.81	1.00	35	8350	0	0	0	0	8
CRW_01492	5S_rRNA links to Rfam database...	0.86	0.79	0.94	33	7591	3	0	2	1	9
CRW_01494	5S_rRNA links to Rfam database...	0.87	0.78	0.97	31	7108	2	0	1	1	9
CRW_01497	5S_rRNA links to Rfam database...	0.87	0.75	1.00	30	7110	0	0	0	0	10
CRW_01498	5S_rRNA links to Rfam database...	0.89	0.79	1.00	34	8094	1	0	0	1	9
CRW_01499	5S_rRNA links to Rfam database...	0.72	0.66	0.79	27	7967	8	0	7	1	14
CRW_01500	5S_rRNA links to Rfam database...	0.92	0.84	1.00	32	7718	5	0	0	5	6
CRW_01501	5S_rRNA links to Rfam database...	0.79	0.71	0.89	32	8479	5	0	4	1	13
CRW_01508	5S_rRNA links to Rfam database...	0.87	0.81	0.94	34	7965	3	0	2	1	8
CRW_01532	5S_rRNA links to Rfam database...	0.97	0.95	1.00	35	7105	2	0	0	2	2
CRW_01533	5S_rRNA links to Rfam database...	0.96	0.92	1.00	34	7106	1	0	0	1	3
CRW_01534	5S_rRNA links to Rfam database...	0.96	0.92	1.00	34	7106	3	0	0	3	3
CRW_01535	5S_rRNA links to Rfam database...	0.96	0.92	1.00	34	7106	2	0	0	2	3
CRW_01536	5S_rRNA links to Rfam database...	0.96	0.95	0.97	35	6985	3	0	1	2	2
CRW_01537	5S_rRNA links to Rfam database...	0.96	0.92	1.00	34	7106	2	0	0	2	3
CRW_01539	5S_rRNA links to Rfam database...	0.97	0.95	1.00	35	7105	2	0	0	2	2
CRW_01540	5S_rRNA links to Rfam database...	0.97	0.95	1.00	35	7105	2	0	0	2	2
CRW_01541	5S_rRNA links to Rfam database...	0.85	0.76	0.97	28	7111	3	0	1	2	9
CRW_01542	5S_rRNA links to Rfam database...	0.99	0.97	1.00	36	7104	2	0	0	2	1
CRW_01544	5S_rRNA links to Rfam database...	0.96	0.92	1.00	34	7106	2	0	0	2	3
CRW_01548	5S_rRNA links to Rfam database...	0.97	0.95	1.00	35	6986	2	0	0	2	2
CRW_01555	5S_rRNA links to Rfam database...	0.97	0.95	1.00	35	9010	2	0	0	2	2
CRW_01556	5S_rRNA links to Rfam database...	0.96	0.92	1.00	34	7106	3	0	0	3	3
CRW_01557	5S_rRNA links to Rfam database...	0.96	0.92	1.00	34	7106	2	0	0	2	3
CRW_01559	5S_rRNA links to Rfam database...	0.99	0.97	1.00	36	7224	3	0	0	3	1
CRW_01562	5S_rRNA links to Rfam database...	0.87	0.84	0.91	31	7106	4	0	3	1	6
CRW_01563	5S_rRNA links to Rfam database...	0.85	0.84	0.86	31	6867	6	0	5	1	6
CRW_01566	5S_rRNA links to Rfam database...	0.85	0.73	1.00	27	7113	2	0	0	2	10
CRW_01568	5S_rRNA links to Rfam database...	0.92	0.89	0.94	33	7105	4	0	2	2	4
CRW_01569	5S_rRNA links to Rfam database...	0.89	0.86	0.91	32	7105	4	0	3	1	5
CRW_01570	5S_rRNA links to Rfam database...	0.97	0.95	1.00	35	7105	2	0	0	2	2
CRW_01572	5S_rRNA links to Rfam database...	0.83	0.81	0.86	30	6986	8	0	5	3	7
CRW_01573	5S_rRNA links to Rfam database...	0.96	0.92	1.00	34	7226	2	0	0	2	3
CRW_01578	5S_rRNA links to Rfam database...	0.96	0.92	1.00	34	7106	3	0	0	3	3
CRW_01580	5S_rRNA links to Rfam database...	0.99	0.97	1.00	36	7104	2	0	0	2	1
CRW_01581	5S_rRNA links to Rfam database...	0.96	0.95	0.97	35	7104	2	0	1	1	2
CRW_01583	5S_rRNA links to Rfam database...	0.99	0.97	1.00	36	7104	1	0	0	1	1
CRW_01584	5S_rRNA links to Rfam database...	0.94	0.92	0.97	34	7105	3	0	1	2	3
CRW_01590	5S_rRNA links to Rfam database...	0.83	0.76	0.90	28	7109	5	0	3	2	9
CRW_01593	5S_rRNA links to Rfam database...	0.94	0.89	1.00	33	7107	1	0	0	1	4
CRW_01595	5S_rRNA links to Rfam database...	0.97	0.95	1.00	35	8480	3	0	0	3	2
CRW_01599	5S_rRNA links to Rfam database...	0.96	0.92	1.00	34	7106	2	0	0	2	3
CRW_01603	5S_rRNA links to Rfam database...	0.93	0.86	1.00	32	7108	2	0	0	2	5
CRW_01605	5S_rRNA links to Rfam database...	0.96	0.92	1.00	34	7106	3	0	0	3	3
CRW_01606	5S_rRNA links to Rfam database...	0.94	0.89	1.00	33	7107	2	0	0	2	4
CRW_01608	5S_rRNA links to Rfam database...	0.99	0.97	1.00	36	8349	2	0	0	2	1
CRW_01616	5S_rRNA links to Rfam database...	0.97	0.95	1.00	35	7105	2	0	0	2	2
CRW_01617	5S_rRNA links to Rfam database...	0.97	0.95	1.00	35	7105	2	0	0	2	2
CRW_01620	5S_rRNA links to Rfam database...	0.99	0.97	1.00	36	6985	3	0	0	3	1
CRW_01621	5S_rRNA links to Rfam database...	0.90	0.84	0.97	31	7108	3	0	1	2	6
CRW_01623	5S_rRNA links to Rfam database...	0.97	0.97	0.97	36	7103	3	0	1	2	1
CRW_01625	5S_rRNA links to Rfam database...	0.96	0.92	1.00	34	7106	2	0	0	2	3
PDB_00012	mir-TAR links to Rfam database...	1.00	1.00	1.00	7	399	2	0	0	2	0
PDB_00070	tRNA links to Rfam database...	0.93	0.88	1.00	21	2829	0	0	0	0	3
PDB_00213	Gammaretro_CES links to Rfam database...	0.84	0.71	1.00	29	5021	0	0	0	0	12
PDB_00229	tRNA links to Rfam database...	0.93	0.87	1.00	20	2755	0	0	0	0	3
PDB_00327	tRNA links to Rfam database...	0.98	0.96	1.00	22	3059	0	0	0	0	1
PDB_00362	tRNA links to Rfam database...	0.98	0.95	1.00	21	2829	0	0	0	0	1
PDB_00402	tRNA links to Rfam database...	0.96	0.91	1.00	21	2754	0	0	0	0	2
PDB_00431	tRNA links to Rfam database...	0.95	0.90	1.00	18	2193	0	0	0	0	2
PDB_00474	tRNA links to Rfam database...	0.96	0.91	1.00	21	2680	0	0	0	0	2
PDB_00553	mir-TAR links to Rfam database...	0.60	0.36	1.00	4	461	0	0	0	0	7
PDB_00571	tRNA links to Rfam database...	0.87	0.80	0.95	20	3300	1	1	0	0	5
PDB_00667	tRNA links to Rfam database...	0.98	0.95	1.00	21	2829	0	0	0	0	1
PDB_00741	Entero_5_CRE links to Rfam database...	0.84	0.71	1.00	12	691	0	0	0	0	5
PDB_00810	s2m links to Rfam database...	0.80	0.65	1.00	11	1070	0	0	0	0	6
PDB_00828	Purine links to Rfam database...	0.84	0.70	1.00	19	2466	2	0	0	2	8
PDB_00829	Purine links to Rfam database...	0.86	0.75	1.00	18	2260	2	0	0	2	6
PDB_00876	HIV_FE links to Rfam database...	0.56	0.40	0.80	8	980	2	0	2	0	12
PDB_01002	tRNA links to Rfam database...	0.95	0.90	1.00	19	2756	2	0	0	2	2
PDB_01020	Purine links to Rfam database...	0.86	0.74	1.00	17	2261	3	0	0	3	6
PDB_01050	UnaL2 links to Rfam database...	0.52	0.38	0.71	5	623	3	0	2	1	8
PDB_01053	tRNA links to Rfam database...	1.00	1.00	1.00	16	1362	0	0	0	0	0
PDB_01073	SAM links to Rfam database...	0.79	0.71	0.89	24	4344	4	2	1	1	10
PDB_01114	TPP links to Rfam database...	0.84	0.74	0.95	20	2829	1	0	1	0	7
PDB_01120	SSU_rRNA_bacteria links to Rfam database...	0.78	0.68	0.88	359	1204721	72	7	41	24	168
PDB_01152	HIV_FS2 links to Rfam database...	0.84	0.71	1.00	10	551	0	0	0	0	4
PDB_01236	ykoK links to Rfam database...	0.87	0.76	1.00	41	11587	2	0	0	2	13
RFA_00389	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	2	0	0	2	1
RFA_00390	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	1	0	0	1	1
RFA_00391	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	2	0	0	2	1
RFA_00396	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00402	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	1	0	0	1	0
RFA_00409	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	2	0	0	2	1
RFA_00416	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1471	2	0	0	2	1
RFA_00433	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00434	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00436	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	1	0	0	1	1
RFA_00440	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1470	1	0	0	1	0
RFA_00442	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	1	0	0	1	0
RFA_00444	Hammerhead_3 links to Rfam database...	0.93	0.87	1.00	13	1527	0	0	0	0	2
RFA_00583	Y_RNA links to Rfam database...	0.97	0.93	1.00	14	4936	1	0	0	1	1
RFA_00584	Y_RNA links to Rfam database...	0.93	0.87	1.00	13	2913	7	0	0	7	2
RFA_00585	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4836	5	0	0	5	0
RFA_00586	Y_RNA links to Rfam database...	0.97	0.93	1.00	14	3902	1	0	0	1	1
RFA_00587	Y_RNA links to Rfam database...	0.97	0.93	1.00	14	4837	3	0	0	3	1
RFA_00588	Y_RNA links to Rfam database...	0.97	0.93	1.00	14	4546	1	0	0	1	1
RFA_00589	Y_RNA links to Rfam database...	0.97	0.93	1.00	14	4357	5	0	0	5	1
RFA_00594	Y_RNA links to Rfam database...	0.90	0.87	0.93	13	2761	2	0	1	1	2
RFA_00596	Y_RNA links to Rfam database...	0.93	0.87	1.00	13	5982	2	0	0	2	2
RFA_00599	Telomerase-vert links to Rfam database...	0.86	0.80	0.93	89	101379	16	3	4	9	22
RFA_00601	Telomerase-vert links to Rfam database...	0.77	0.68	0.89	77	99148	20	1	9	10	37
RFA_00658	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	1127	1	0	1	0	14
RFA_00664	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	989	1	0	1	0	14
RFA_00667	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	989	1	0	1	0	14
RFA_00668	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	989	1	0	1	0	14
RFA_00672	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	899	4	0	4	0	13
RFA_00673	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	1127	1	0	1	0	14
RFA_00674	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	1124	4	0	4	0	14
RFA_00675	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	989	1	0	1	0	14
RFA_00677	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	989	1	0	1	0	14
RFA_00678	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	945	1	0	1	0	14
RFA_00680	Hammerhead_1 links to Rfam database...	0.31	0.14	0.67	2	1125	1	0	1	0	12
RFA_00704	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	989	1	0	1	0	14
RFA_00707	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	1032	3	0	3	0	14
RFA_00715	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	945	1	0	1	0	14
RFA_00717	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	902	1	0	1	0	14
RFA_00730	s2m links to Rfam database...	0.78	0.75	0.82	9	892	2	0	2	0	3
RFA_00731	s2m links to Rfam database...	0.78	0.75	0.82	9	892	2	0	2	0	3
RFA_00733	s2m links to Rfam database...	0.78	0.75	0.82	9	892	2	0	2	0	3
RFA_00734	s2m links to Rfam database...	0.78	0.75	0.82	9	892	2	0	2	0	3
RFA_00736	s2m links to Rfam database...	0.78	0.75	0.82	9	892	2	0	2	0	3
RFA_00737	s2m links to Rfam database...	0.78	0.75	0.82	9	892	3	0	2	1	3
RFA_00745	s2m links to Rfam database...	0.96	0.92	1.00	11	935	0	0	0	0	1
RFA_00749	s2m links to Rfam database...	0.78	0.75	0.82	9	892	2	0	2	0	3
RFA_00758	s2m links to Rfam database...	0.78	0.75	0.82	9	892	3	0	2	1	3
RFA_00762	s2m links to Rfam database...	0.78	0.75	0.82	9	892	2	0	2	0	3
RFA_00763	s2m links to Rfam database...	0.96	0.92	1.00	11	892	1	0	0	1	1
RFA_00764	s2m links to Rfam database...	0.96	0.92	1.00	11	892	1	0	0	1	1
RFA_00765	s2m links to Rfam database...	0.78	0.75	0.82	9	892	2	0	2	0	3
RFA_00786	Gammaretro_CES links to Rfam database...	0.95	0.91	1.00	29	5021	0	0	0	0	3
RFA_00791	Gammaretro_CES links to Rfam database...	0.90	0.88	0.93	28	5121	2	0	2	0	4
RFA_00792	Gammaretro_CES links to Rfam database...	0.89	0.84	0.93	27	5021	2	0	2	0	5
RFA_00801	Gammaretro_CES links to Rfam database...	0.89	0.84	0.93	27	5021	2	0	2	0	5
SPR_00007	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00009	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	1	0	0	1	0
SPR_00010	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00012	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	1	0	0	1	0
SPR_00013	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	1	0	0	1	0
SPR_00016	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00017	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00025	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	1	0	0	1	0
SPR_00026	tRNA links to Rfam database...	0.95	0.95	0.95	20	2905	2	0	1	1	1
SPR_00027	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00036	tRNA links to Rfam database...	0.92	0.90	0.95	18	2756	2	0	1	1	2
SPR_00045	tRNA links to Rfam database...	0.95	0.91	1.00	20	2830	0	0	0	0	2
SPR_00064	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00065	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00066	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00068	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00070	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00074	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	1	0	0	1	0
SPR_00079	tRNA links to Rfam database...	0.97	0.95	1.00	18	2467	1	0	0	1	1
SPR_00086	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00087	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	1	0	0	1	0
SPR_00088	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	1	0	0	1	0
SPR_00089	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	1	0	0	1	0
SPR_00090	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	1	0	0	1	0
SPR_00091	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	1	0	0	1	0
SPR_00095	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00111	tRNA links to Rfam database...	1.00	1.00	1.00	21	2680	0	0	0	0	0
SPR_00112	tRNA links to Rfam database...	1.00	1.00	1.00	21	2680	0	0	0	0	0
SPR_00115	tRNA links to Rfam database...	1.00	1.00	1.00	21	2680	0	0	0	0	0
SPR_00117	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00139	tRNA links to Rfam database...	0.95	0.90	1.00	19	2907	1	0	0	1	2
SPR_00153	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00155	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00156	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00176	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	1	0	0	1	0
SPR_00177	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00178	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00191	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00200	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00224	tRNA links to Rfam database...	1.00	1.00	1.00	20	3721	3	0	0	3	0
SPR_00271	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00273	tRNA links to Rfam database...	0.95	0.95	0.95	20	2829	1	0	1	0	1
SPR_00276	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00277	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00294	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00295	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	0	0	0	0	0
SPR_00314	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00315	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00317	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	1	0	0	1	0
SPR_00318	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00321	tRNA links to Rfam database...	1.00	1.00	1.00	21	2982	0	0	0	0	0
SPR_00333	tRNA links to Rfam database...	0.98	0.95	1.00	20	2755	0	0	0	0	1
SPR_00352	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00353	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00357	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00358	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	1	0	0	1	0
SPR_00370	tRNA links to Rfam database...	0.93	0.90	0.95	19	2755	1	0	1	0	2
SPR_00386	tRNA links to Rfam database...	1.00	1.00	1.00	20	4166	0	0	0	0	0
SPR_00414	tRNA links to Rfam database...	0.98	0.95	1.00	20	3550	3	0	0	3	1
SPR_00415	tRNA links to Rfam database...	0.98	0.95	1.00	20	3550	3	0	0	3	1
SPR_00417	tRNA links to Rfam database...	0.95	0.91	1.00	20	3550	3	0	0	3	2
SPR_00418	tRNA links to Rfam database...	0.95	0.91	1.00	20	3550	3	0	0	3	2
SPR_00434	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00435	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00436	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00437	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	0	0	0	0	0
SPR_00438	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	0	0	0	0	0
SPR_00452	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00455	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00456	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00476	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	0	0	0	0	0
SPR_00479	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00482	tRNA links to Rfam database...	1.00	1.00	1.00	21	2680	0	0	0	0	0
SPR_00483	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00487	tRNA links to Rfam database...	0.86	0.82	0.90	18	2681	2	0	2	0	4
SPR_00493	tRNA links to Rfam database...	0.95	0.91	1.00	20	2755	0	0	0	0	2
SPR_00496	tRNA links to Rfam database...	0.98	0.95	1.00	20	2755	0	0	0	0	1
SPR_00497	tRNA links to Rfam database...	0.98	0.95	1.00	20	2755	0	0	0	0	1
SPR_00502	tRNA links to Rfam database...	0.98	0.95	1.00	20	2906	0	0	0	0	1
SPR_00504	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	0	0	0	0	0
SPR_00505	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	1	0	0	1	0
SPR_00506	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00509	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00512	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	1	0	0	1	0
SPR_00513	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	1	0	0	1	0
SPR_00518	tRNA links to Rfam database...	0.97	0.95	1.00	19	2907	0	0	0	0	1
SPR_00548	tRNA links to Rfam database...	0.98	0.95	1.00	20	3383	1	0	0	1	1
SPR_00557	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00561	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00590	tRNA links to Rfam database...	1.00	1.00	1.00	20	2983	1	0	0	1	0
SPR_00593	tRNA links to Rfam database...	1.00	1.00	1.00	19	2756	1	0	0	1	0
SPR_00595	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	0	0	0	0	0
SPR_00598	tRNA links to Rfam database...	0.98	0.95	1.00	20	2983	0	0	0	0	1
SPR_00610	tRNA links to Rfam database...	0.93	0.90	0.95	19	2536	1	0	1	0	2
SPR_00620	tRNA links to Rfam database...	0.98	0.95	1.00	20	2983	0	0	0	0	1
SPR_00721	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00722	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	2	0	0	2	0
SPR_00758	tRNA links to Rfam database...	1.00	1.00	1.00	21	2982	0	0	0	0	0
SPR_00760	tRNA links to Rfam database...	1.00	1.00	1.00	21	3549	0	0	0	0	0
SPR_00777	tRNA links to Rfam database...	1.00	1.00	1.00	20	2608	1	0	0	1	0
SPR_00867	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00868	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00943	tRNA links to Rfam database...	1.00	1.00	1.00	20	2536	0	0	0	0	0
SPR_00957	tRNA links to Rfam database...	1.00	1.00	1.00	21	2982	0	0	0	0	0
SPR_01040	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	0	0	0	0	0
SPR_01088	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_01095	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_01106	tRNA links to Rfam database...	1.00	1.00	1.00	21	2535	0	0	0	0	0
SPR_01117	tRNA links to Rfam database...	0.98	0.95	1.00	20	2983	0	0	0	0	1
SPR_01157	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	0	0	0	0	0
SRP_00006	Metazoa_SRP links to Rfam database...	0.91	0.84	0.98	85	45666	6	0	2	4	16
SRP_00008	Bacteria_small_SRP links to Rfam database...	0.49	0.24	1.00	6	2920	0	0	0	0	19
SRP_00011	Plant_SRP links to Rfam database...	0.78	0.73	0.84	76	46269	22	0	15	7	28
SRP_00015	Plant_SRP links to Rfam database...	0.81	0.75	0.87	74	46275	21	0	11	10	25
SRP_00020	Bacteria_small_SRP links to Rfam database...	0.55	0.30	1.00	10	5555	0	0	0	0	23
SRP_00038	Bacteria_small_SRP links to Rfam database...	0.39	0.18	0.86	6	5043	2	0	1	1	27
SRP_00042	Bacteria_small_SRP links to Rfam database...	0.85	0.76	0.95	19	3985	2	0	1	1	6
SRP_00044	Bacteria_small_SRP links to Rfam database...	0.43	0.19	1.00	6	6099	0	0	0	0	26
SRP_00050	Metazoa_SRP links to Rfam database...	0.95	0.92	0.99	91	44758	6	0	1	5	8
SRP_00051	Bacteria_small_SRP links to Rfam database...	0.41	0.20	0.86	6	5453	2	0	1	1	24
SRP_00054	Bacteria_small_SRP links to Rfam database...	0.40	0.19	0.86	6	5558	2	0	1	1	26
SRP_00057	Bacteria_small_SRP links to Rfam database...	0.41	0.17	1.00	6	6322	0	0	0	0	29
SRP_00058	Bacteria_small_SRP links to Rfam database...	0.40	0.21	0.78	7	5769	3	0	2	1	27
SRP_00066	Metazoa_SRP links to Rfam database...	0.79	0.71	0.89	71	45371	17	0	9	8	29
SRP_00072	Bacteria_small_SRP links to Rfam database...	0.45	0.21	1.00	6	6322	0	0	0	0	23
SRP_00074	Bacteria_small_SRP links to Rfam database...	0.45	0.21	1.00	6	6549	0	0	0	0	23
SRP_00075	Bacteria_small_SRP links to Rfam database...	0.42	0.18	1.00	6	5559	0	0	0	0	28
SRP_00077	Bacteria_small_SRP links to Rfam database...	0.40	0.16	1.00	6	6664	0	0	0	0	31
SRP_00084	Bacteria_small_SRP links to Rfam database...	0.39	0.18	0.86	6	5453	1	0	1	0	28
SRP_00086	Metazoa_SRP links to Rfam database...	0.88	0.83	0.94	83	44165	8	0	5	3	17
SRP_00094	Bacteria_small_SRP links to Rfam database...	0.58	0.33	1.00	8	4087	0	0	0	0	16
SRP_00095	Bacteria_small_SRP links to Rfam database...	0.45	0.24	0.86	6	3998	1	0	1	0	19
SRP_00098	Bacteria_small_SRP links to Rfam database...	0.40	0.16	1.00	6	6435	0	0	0	0	31
SRP_00102	Metazoa_SRP links to Rfam database...	0.82	0.75	0.90	76	44467	12	0	8	4	25
SRP_00103	Metazoa_SRP links to Rfam database...	0.82	0.73	0.93	74	45371	9	0	6	3	28
SRP_00105	Bacteria_small_SRP links to Rfam database...	0.42	0.18	1.00	6	5559	0	0	0	0	28
SRP_00107	Bacteria_small_SRP links to Rfam database...	0.56	0.32	1.00	6	3649	0	0	0	0	13
SRP_00121	Bacteria_small_SRP links to Rfam database...	0.49	0.24	1.00	6	4272	0	0	0	0	19
SRP_00128	Bacteria_small_SRP links to Rfam database...	0.41	0.17	1.00	6	6780	0	0	0	0	30
SRP_00141	Bacteria_small_SRP links to Rfam database...	0.35	0.12	1.00	5	6323	1	0	0	1	36
SRP_00152	Plant_SRP links to Rfam database...	0.85	0.80	0.90	82	45662	20	0	9	11	21
SRP_00161	Bacteria_small_SRP links to Rfam database...	0.52	0.27	1.00	6	2844	0	0	0	0	16
SRP_00163	Bacteria_small_SRP links to Rfam database...	0.48	0.23	1.00	6	3480	0	0	0	0	20
SRP_00164	Bacteria_small_SRP links to Rfam database...	0.38	0.17	0.86	6	6896	1	0	1	0	29
SRP_00170	Bacteria_small_SRP links to Rfam database...	0.85	0.76	0.95	19	4075	2	0	1	1	6
SRP_00171	Metazoa_SRP links to Rfam database...	0.55	0.42	0.71	37	45399	23	3	12	8	51
SRP_00178	Plant_SRP links to Rfam database...	0.85	0.78	0.93	80	45667	17	0	6	11	22
SRP_00179	Plant_SRP links to Rfam database...	0.86	0.80	0.92	84	45965	15	0	7	8	21
SRP_00181	Plant_SRP links to Rfam database...	0.80	0.74	0.86	75	45969	21	0	12	9	27
SRP_00182	Plant_SRP links to Rfam database...	0.89	0.84	0.93	85	45965	13	0	6	7	16
SRP_00184	Plant_SRP links to Rfam database...	0.83	0.79	0.87	79	45965	24	0	12	12	21
SRP_00188	Plant_SRP links to Rfam database...	0.85	0.81	0.89	64	31053	13	0	8	5	15
SRP_00194	Bacteria_small_SRP links to Rfam database...	0.44	0.24	0.83	5	3234	2	0	1	1	16
SRP_00200	Bacteria_small_SRP links to Rfam database...	0.41	0.17	1.00	6	6897	0	0	0	0	30
SRP_00209	Bacteria_small_SRP links to Rfam database...	0.64	0.41	1.00	11	4645	0	0	0	0	16
SRP_00213	Bacteria_small_SRP links to Rfam database...	0.56	0.32	1.00	8	4178	0	0	0	0	17
SRP_00215	Bacteria_small_SRP links to Rfam database...	0.49	0.24	1.00	6	3234	0	0	0	0	19
SRP_00228	Metazoa_SRP links to Rfam database...	0.92	0.86	0.99	82	45368	10	0	1	9	13
SRP_00231	Bacteria_small_SRP links to Rfam database...	0.39	0.18	0.86	6	5453	1	0	1	0	28
SRP_00233	Bacteria_small_SRP links to Rfam database...	0.39	0.18	0.86	6	5144	2	0	1	1	27
SRP_00243	Bacteria_small_SRP links to Rfam database...	0.44	0.19	1.00	6	5145	0	0	0	0	25
SRP_00244	Bacteria_small_SRP links to Rfam database...	0.36	0.13	1.00	5	6898	1	0	0	1	34
SRP_00250	Bacteria_small_SRP links to Rfam database...	0.41	0.17	1.00	6	6780	0	0	0	0	30
SRP_00251	Bacteria_small_SRP links to Rfam database...	0.41	0.17	1.00	6	7015	0	0	0	0	30
SRP_00266	Bacteria_small_SRP links to Rfam database...	0.45	0.21	1.00	6	4650	0	0	0	0	23
SRP_00268	Bacteria_small_SRP links to Rfam database...	0.82	0.70	0.95	19	4166	2	0	1	1	8
SRP_00269	Bacteria_small_SRP links to Rfam database...	0.43	0.18	1.00	6	5044	1	0	0	1	27
SRP_00270	Bacteria_small_SRP links to Rfam database...	0.37	0.16	0.83	5	4650	2	0	1	1	26
SRP_00271	Bacteria_small_SRP links to Rfam database...	0.50	0.25	1.00	6	3234	0	0	0	0	18
SRP_00273	Bacteria_small_SRP links to Rfam database...	0.48	0.25	0.91	10	6775	1	0	1	0	30
SRP_00274	Bacteria_small_SRP links to Rfam database...	0.40	0.16	1.00	6	6897	0	0	0	0	32
SRP_00295	Bacteria_small_SRP links to Rfam database...	0.36	0.13	1.00	5	6898	1	0	0	1	33
SRP_00303	Bacteria_small_SRP links to Rfam database...	0.43	0.19	1.00	6	6664	0	0	0	0	26
SRP_00310	Bacteria_small_SRP links to Rfam database...	0.51	0.26	1.00	6	2920	0	0	0	0	17
SRP_00312	Bacteria_small_SRP links to Rfam database...	0.84	0.74	0.95	20	4165	2	0	1	1	7
SRP_00315	Bacteria_small_SRP links to Rfam database...	0.59	0.35	1.00	8	2918	0	0	0	0	15
SRP_00317	Metazoa_SRP links to Rfam database...	0.92	0.87	0.98	85	45063	7	0	2	5	13
SRP_00318	Bacteria_small_SRP links to Rfam database...	0.51	0.26	1.00	6	2997	0	0	0	0	17
SRP_00325	Bacteria_small_SRP links to Rfam database...	0.43	0.21	0.88	7	4363	2	0	1	1	26
SRP_00326	Bacteria_small_SRP links to Rfam database...	0.40	0.16	1.00	5	5045	1	0	0	1	26
SRP_00333	Bacteria_small_SRP links to Rfam database...	0.42	0.18	1.00	6	5145	0	0	0	0	28
SRP_00338	Bacteria_small_SRP links to Rfam database...	0.41	0.17	1.00	6	5454	0	0	0	0	30
SRP_00341	Bacteria_small_SRP links to Rfam database...	0.44	0.19	1.00	6	4747	0	0	0	0	25
SRP_00342	Bacteria_small_SRP links to Rfam database...	0.49	0.24	1.00	6	3999	0	0	0	0	19
SRP_00347	Metazoa_SRP links to Rfam database...	0.88	0.82	0.95	79	46582	15	0	4	11	17
SRP_00350	Bacteria_small_SRP links to Rfam database...	0.84	0.74	0.95	20	3895	1	0	1	0	7
SRP_00357	Bacteria_small_SRP links to Rfam database...	0.41	0.17	1.00	6	5350	0	0	0	0	30
SRP_00358	Bacteria_small_SRP links to Rfam database...	0.41	0.17	1.00	6	6322	0	0	0	0	29
SRP_00367	Bacteria_small_SRP links to Rfam database...	0.41	0.17	1.00	6	6780	0	0	0	0	29
SRP_00368	Metazoa_SRP links to Rfam database...	0.89	0.82	0.98	80	43874	9	0	2	7	18
SRP_00369	Bacteria_small_SRP links to Rfam database...	0.41	0.17	1.00	6	5772	0	0	0	0	29
SRP_00383	Bacteria_small_SRP links to Rfam database...	0.50	0.25	1.00	6	3234	0	0	0	0	18
TMR_00017	tmRNA links to Rfam database...	0.71	0.55	0.92	56	67100	8	1	4	3	46
TMR_00018	tmRNA links to Rfam database...	0.63	0.52	0.76	48	64557	21	6	9	6	44
TMR_00038	tmRNA links to Rfam database...	0.61	0.52	0.73	57	71175	26	5	16	5	53
TMR_00042	tmRNA links to Rfam database...	0.62	0.49	0.79	48	62774	13	4	9	0	50
TMR_00046	tmRNA links to Rfam database...	0.46	0.36	0.58	35	62775	26	4	21	1	61
TMR_00048	tmRNA links to Rfam database...	0.63	0.52	0.77	49	64916	16	7	8	1	46
TMR_00080	tmRNA links to Rfam database...	0.64	0.51	0.80	49	70439	13	7	5	1	47
TMR_00082	tmRNA links to Rfam database...	0.57	0.45	0.73	43	67837	20	6	10	4	53
TMR_00123	tmRNA links to Rfam database...	0.68	0.52	0.88	53	66370	12	1	6	5	48
TMR_00137	tmRNA links to Rfam database...	0.69	0.60	0.79	53	61008	20	7	7	6	36
TMR_00142	tmRNA links to Rfam database...	0.50	0.40	0.61	41	70809	31	10	16	5	61
TMR_00207	tmRNA links to Rfam database...	0.60	0.45	0.81	46	72333	18	1	10	7	57
TMR_00257	tmRNA links to Rfam database...	0.71	0.58	0.88	57	67096	13	3	5	5	41
TMR_00271	tmRNA links to Rfam database...	0.59	0.48	0.72	44	64200	19	6	11	2	47
TMR_00332	tmRNA links to Rfam database...	0.70	0.56	0.89	55	67099	12	2	5	5	44
TMR_00366	tmRNA links to Rfam database...	0.48	0.41	0.57	41	67824	35	9	22	4	59
TMR_00378	tmRNA links to Rfam database...	0.50	0.41	0.62	40	67831	34	8	17	9	57
TMR_00399	tmRNA links to Rfam database...	0.70	0.61	0.81	57	64910	21	6	7	8	37
TMR_00404	tmRNA links to Rfam database...	0.54	0.45	0.66	41	67466	22	8	13	1	51
TMR_00427	tmRNA links to Rfam database...	0.56	0.43	0.74	42	67471	15	9	6	0	55
TMR_00443	tmRNA links to Rfam database...	0.76	0.63	0.93	65	67091	11	2	3	6	39
TMR_00451	tmRNA links to Rfam database...	0.57	0.51	0.65	45	63477	32	11	13	8	44
TMR_00458	tmRNA links to Rfam database...	0.67	0.57	0.78	53	63478	19	7	8	4	40
TMR_00469	tmRNA links to Rfam database...	0.73	0.61	0.88	61	64551	11	4	4	3	39
TMR_00472	tmRNA links to Rfam database...	0.67	0.58	0.79	56	64549	19	9	6	4	41
TMR_00519	tmRNA links to Rfam database...	0.63	0.54	0.74	51	63121	25	7	11	7	44
TMR_00520	tmRNA links to Rfam database...	0.65	0.55	0.78	54	63121	18	1	14	3	45
TMR_00522	tmRNA links to Rfam database...	0.62	0.51	0.77	49	63126	19	6	9	4	48
TMR_00528	tmRNA links to Rfam database...	0.62	0.51	0.75	49	63125	20	5	11	4	48
TMR_00540	tmRNA links to Rfam database...	0.69	0.58	0.83	60	73464	14	7	5	2	44
TMR_00568	tmRNA links to Rfam database...	0.75	0.66	0.87	65	60651	16	2	8	6	34
TMR_00571	tmRNA links to Rfam database...	0.77	0.68	0.88	67	60650	15	2	7	6	32
TMR_00580	tmRNA links to Rfam database...	0.76	0.65	0.88	65	60652	15	2	7	6	35
TMR_00584	tmRNA links to Rfam database...	0.78	0.66	0.93	64	61006	13	2	3	8	33
TMR_00586	tmRNA links to Rfam database...	0.72	0.63	0.82	61	61001	19	5	8	6	36
TMR_00616	tmRNA links to Rfam database...	0.68	0.57	0.81	56	67092	17	7	6	4	43
TMR_00699	tmRNA links to Rfam database...	0.69	0.54	0.87	55	67098	9	1	7	1	47
TMR_00702	tmRNA links to Rfam database...	0.60	0.45	0.79	45	67104	17	3	9	5	55
TMR_00703	tmRNA links to Rfam database...	0.71	0.59	0.87	58	67461	14	3	6	5	41

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Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.

Table of contents:

Overview

Performance plots

Performance of PETfold_pre2.0(seed) - scored higher in this pairwise comparison

1. Total counts & total scores for PETfold_pre2.0(seed)

2. Individual counts for PETfold_pre2.0(seed) [ download as .csv ]

Performance of PPfold(20) - scored lower in this pairwise comparison

1. Total counts & total scores for PPfold(20)

2. Individual counts for PPfold(20) [ download as .csv ]