CompaRNA - on-line benchmarks of RNA structure prediction methods

Laboratory of Structural Bioinformatics @ Adam Mickiewicz University in Poznan

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Overview

Metric	PPfold(20)		PknotsRG
MCC	0.763	>	0.559
Average MCC ± 95% Confidence Intervals	0.773 ± 0.018	>	0.613 ± 0.021
Sensitivity	0.658	>	0.551
Positive Predictive Value	0.885	>	0.568
Total TP	22565	>	18891
Total TN	19636702	>	19628949
Total FP	4330	<	15923
Total FP CONTRA	634	<	2039
Total FP INCONS	2297	<	12319
Total FP COMP	1399	<	1565
Total FN	11712	<	15386
P-value	3.56938820447e-08

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Performance plots

Comparison of performance of PPfold(20) and PknotsRG. Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data (individual counts for PPfold(20) and PknotsRG).
Average Matthews Correlation Coefficients (MCC) with 95% confidence intervals (CIs) were plotted for different RNA families, for which at least 3 members were present in the benchmarking dataset. 'n' denotes the number of MCCs used to calculate the average and CI. See tables below for raw data (individual counts for PPfold(20) and PknotsRG).
Comparison of average Matthews Correlation Coefficients (MCCs) for PPfold(20) and PknotsRG. The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data (individual counts for PPfold(20) and PknotsRG).

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Performance of PPfold(20) - scored higher in this pairwise comparison

1. Total counts & total scores for PPfold(20)

Total Base Pair Counts
Total TP	22565
Total TN	19636702
Total FP	4330
Total FP CONTRA	634
Total FP INCONS	2297
Total FP COMP	1399
Total FN	11712

Total Scores
MCC	0.763
Average MCC ± 95% Confidence Intervals	0.773 ± 0.018
Sensitivity	0.658
Positive Predictive Value	0.885
Nr of predictions	556

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2. Individual counts for PPfold(20) [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00004	RNaseP_bact_a links to Rfam database...	0.67	0.57	0.80	55	47826	17	1	13	3	42
ASE_00005	RNaseP_bact_a links to Rfam database...	0.75	0.64	0.88	75	57885	13	3	7	3	42
ASE_00006	RNaseP_bact_a links to Rfam database...	0.69	0.60	0.80	56	47516	16	1	13	2	37
ASE_00007	RNaseP_bact_a links to Rfam database...	0.85	0.81	0.89	89	59585	15	2	9	4	21
ASE_00012	RNaseP_bact_a links to Rfam database...	0.74	0.67	0.82	83	73819	24	4	14	6	40
ASE_00018	RNaseP_bact_a links to Rfam database...	0.77	0.66	0.90	89	80502	14	3	7	4	45
ASE_00020	RNaseP_bact_a links to Rfam database...	0.66	0.52	0.84	66	73841	19	6	7	6	60
ASE_00021	RNaseP_bact_a links to Rfam database...	0.55	0.44	0.69	70	104095	36	5	26	5	90
ASE_00022	RNaseP_bact_b links to Rfam database...	0.78	0.69	0.87	86	82929	22	1	12	9	38
ASE_00028	RNaseP_bact_b links to Rfam database...	0.75	0.64	0.87	81	84573	20	1	11	8	45
ASE_00035	RNaseP_bact_a links to Rfam database...	0.80	0.73	0.88	86	70402	19	1	11	7	32
ASE_00037	RNaseP_bact_a links to Rfam database...	0.86	0.81	0.92	89	59243	13	1	7	5	21
ASE_00040	RNaseP_bact_a links to Rfam database...	0.81	0.71	0.92	95	78900	10	3	5	2	38
ASE_00041	RNaseP_bact_a links to Rfam database...	0.83	0.81	0.85	88	57527	18	2	13	3	20
ASE_00042	RNaseP_bact_a links to Rfam database...	0.67	0.57	0.80	82	89998	23	2	18	3	63
ASE_00044	RNaseP_bact_a links to Rfam database...	0.89	0.86	0.92	90	54517	10	2	6	2	15
ASE_00045	RNaseP_bact_b links to Rfam database...	0.82	0.78	0.86	62	47206	17	1	9	7	18
ASE_00064	RNaseP_bact_a links to Rfam database...	0.80	0.73	0.87	65	45376	15	1	9	5	24
ASE_00068	RNaseP_bact_a links to Rfam database...	0.64	0.54	0.75	46	37614	17	5	10	2	39
ASE_00074	RNaseP_bact_a links to Rfam database...	0.85	0.78	0.93	93	67796	12	1	6	5	26
ASE_00075	RNaseP_bact_a links to Rfam database...	0.57	0.44	0.72	72	108711	35	5	23	7	90
ASE_00077	RNaseP_bact_a links to Rfam database...	0.85	0.83	0.88	71	45069	14	5	5	4	15
ASE_00078	RNaseP_bact_a links to Rfam database...	0.91	0.87	0.95	72	42995	11	1	3	7	11
ASE_00080	RNaseP_bact_a links to Rfam database...	0.44	0.35	0.57	43	71555	36	2	31	3	80
ASE_00081	RNaseP_bact_a links to Rfam database...	0.82	0.73	0.92	71	49693	9	2	4	3	26
ASE_00082	RNaseP_bact_a links to Rfam database...	0.65	0.52	0.81	60	70426	22	1	13	8	56
ASE_00083	RNaseP_bact_a links to Rfam database...	0.74	0.62	0.89	68	62405	13	3	5	5	42
ASE_00084	RNaseP_bact_a links to Rfam database...	0.74	0.65	0.84	64	53552	16	2	10	4	35
ASE_00090	RNaseP_bact_a links to Rfam database...	0.78	0.67	0.91	68	55536	11	2	5	4	33
ASE_00092	RNaseP_bact_a links to Rfam database...	0.65	0.53	0.79	60	63470	21	3	13	5	53
ASE_00099	RNaseP_bact_a links to Rfam database...	0.85	0.78	0.93	93	64520	11	2	5	4	27
ASE_00104	RNaseP_bact_a links to Rfam database...	0.83	0.76	0.91	91	64161	15	1	8	6	28
ASE_00105	RNaseP_bact_a links to Rfam database...	0.59	0.50	0.70	56	64181	29	6	18	5	55
ASE_00107	RNaseP_bact_a links to Rfam database...	0.83	0.75	0.92	95	73050	11	2	6	3	32
ASE_00114	RNaseP_bact_b links to Rfam database...	0.69	0.65	0.74	50	45383	26	1	17	8	27
ASE_00115	RNaseP_bact_a links to Rfam database...	0.78	0.68	0.88	69	54537	12	2	7	3	32
ASE_00118	RNaseP_bact_a links to Rfam database...	0.70	0.60	0.82	61	60652	17	2	11	4	41
ASE_00119	RNaseP_bact_a links to Rfam database...	0.70	0.54	0.92	58	62772	8	2	3	3	50
ASE_00123	RNaseP_bact_a links to Rfam database...	0.69	0.59	0.82	50	38442	14	3	8	3	35
ASE_00125	RNaseP_bact_a links to Rfam database...	0.72	0.60	0.87	53	39279	14	2	6	6	35
ASE_00126	RNaseP_bact_a links to Rfam database...	0.85	0.79	0.90	65	40398	13	2	5	6	17
ASE_00128	RNaseP_bact_a links to Rfam database...	0.80	0.70	0.92	70	53225	10	2	4	4	30
ASE_00129	RNaseP_bact_a links to Rfam database...	0.77	0.65	0.92	72	62757	9	3	3	3	39
ASE_00131	RNaseP_bact_a links to Rfam database...	0.75	0.62	0.90	53	39281	12	2	4	6	32
ASE_00134	RNaseP_bact_a links to Rfam database...	0.75	0.68	0.83	65	50325	16	1	12	3	30
ASE_00135	RNaseP_bact_a links to Rfam database...	0.63	0.54	0.74	59	63110	24	3	18	3	50
ASE_00136	RNaseP_bact_a links to Rfam database...	0.79	0.72	0.88	66	48130	12	2	7	3	26
ASE_00137	RNaseP_bact_a links to Rfam database...	0.80	0.66	0.97	65	48449	7	1	1	5	33
ASE_00138	RNaseP_bact_a links to Rfam database...	0.84	0.78	0.91	63	40401	10	2	4	4	18
ASE_00140	RNaseP_bact_a links to Rfam database...	0.69	0.55	0.86	69	70796	17	7	4	6	56
ASE_00142	RNaseP_bact_a links to Rfam database...	0.83	0.74	0.93	90	67064	13	2	5	6	32
ASE_00146	RNaseP_bact_a links to Rfam database...	0.81	0.71	0.92	88	70780	13	1	7	5	36
ASE_00153	RNaseP_nuc links to Rfam database...	0.43	0.37	0.50	27	57576	32	4	23	5	46
ASE_00161	RNaseP_bact_b links to Rfam database...	0.77	0.75	0.79	65	53546	24	1	16	7	22
ASE_00163	RNaseP_bact_a links to Rfam database...	0.83	0.76	0.90	71	53222	12	1	7	4	22
ASE_00165	RNaseP_bact_a links to Rfam database...	0.79	0.66	0.94	67	52904	10	2	2	6	34
ASE_00170	RNaseP_bact_a links to Rfam database...	0.73	0.66	0.80	61	48752	20	2	13	5	32
ASE_00171	RNaseP_bact_a links to Rfam database...	0.82	0.74	0.91	70	48439	11	3	4	4	24
ASE_00172	RNaseP_bact_a links to Rfam database...	0.77	0.65	0.91	69	58920	10	3	4	3	37
ASE_00174	RNaseP_bact_a links to Rfam database...	0.66	0.54	0.80	59	61001	18	3	12	3	50
ASE_00175	RNaseP_bact_a links to Rfam database...	0.73	0.64	0.85	68	59951	17	3	9	5	39
ASE_00179	RNaseP_bact_a links to Rfam database...	0.83	0.80	0.87	67	44176	15	5	5	5	17
ASE_00180	RNaseP_bact_a links to Rfam database...	0.78	0.69	0.88	69	51282	12	3	6	3	31
ASE_00181	RNaseP_bact_a links to Rfam database...	0.70	0.59	0.83	63	57554	18	4	9	5	43
ASE_00182	RNaseP_bact_a links to Rfam database...	0.69	0.53	0.90	72	84175	11	3	5	3	64
ASE_00183	RNaseP_bact_a links to Rfam database...	0.76	0.65	0.90	73	61344	12	2	6	4	40
ASE_00184	RNaseP_bact_a links to Rfam database...	0.77	0.68	0.87	69	54536	13	2	8	3	33
ASE_00185	RNaseP_bact_a links to Rfam database...	0.68	0.52	0.90	66	73463	12	3	4	5	62
ASE_00186	RNaseP_bact_a links to Rfam database...	0.69	0.60	0.80	79	78904	24	3	17	4	53
ASE_00190	RNaseP_bact_b links to Rfam database...	0.75	0.64	0.87	58	45384	12	1	8	3	32
ASE_00197	RNaseP_bact_a links to Rfam database...	0.67	0.55	0.81	80	89154	24	2	17	5	65
ASE_00198	RNaseP_bact_a links to Rfam database...	0.80	0.70	0.92	71	52573	9	1	5	3	31
ASE_00203	RNaseP_bact_a links to Rfam database...	0.80	0.72	0.90	69	46588	13	3	5	5	27
ASE_00212	RNaseP_bact_a links to Rfam database...	0.66	0.53	0.83	78	93867	20	2	14	4	70
ASE_00214	RNaseP_bact_a links to Rfam database...	0.77	0.66	0.91	68	56205	11	3	4	4	35
ASE_00215	RNaseP_bact_a links to Rfam database...	0.62	0.46	0.82	46	48460	13	2	8	3	53
ASE_00216	RNaseP_bact_a links to Rfam database...	0.91	0.84	0.99	69	39270	5	1	0	4	13
ASE_00217	RNaseP_bact_a links to Rfam database...	0.83	0.77	0.91	69	40394	11	2	5	4	21
ASE_00221	RNaseP_bact_a links to Rfam database...	0.85	0.78	0.93	91	64522	10	1	6	3	26
ASE_00228	RNaseP_bact_a links to Rfam database...	0.75	0.69	0.83	59	46900	16	2	10	4	27
ASE_00229	RNaseP_bact_a links to Rfam database...	0.88	0.79	0.97	69	42415	5	2	0	3	18
ASE_00231	RNaseP_bact_a links to Rfam database...	0.67	0.57	0.77	55	47824	22	1	15	6	41
ASE_00232	RNaseP_bact_a links to Rfam database...	0.89	0.82	0.97	69	38432	6	1	1	4	15
ASE_00234	RNaseP_bact_a links to Rfam database...	0.66	0.53	0.83	68	75384	20	6	8	6	61
ASE_00238	RNaseP_bact_a links to Rfam database...	0.67	0.56	0.80	64	64181	22	5	11	6	50
ASE_00241	RNaseP_bact_a links to Rfam database...	0.83	0.78	0.87	68	43878	14	1	9	4	19
ASE_00242	RNaseP_bact_a links to Rfam database...	0.86	0.82	0.90	92	60973	15	1	9	5	20
ASE_00248	RNaseP_bact_a links to Rfam database...	0.86	0.81	0.91	92	62380	13	1	8	4	22
ASE_00254	RNaseP_bact_a links to Rfam database...	0.85	0.77	0.94	63	36789	8	2	2	4	19
ASE_00255	RNaseP_bact_a links to Rfam database...	0.62	0.55	0.71	72	74589	32	4	26	2	58
ASE_00257	RNaseP_bact_a links to Rfam database...	0.73	0.65	0.82	63	50963	17	4	10	3	34
ASE_00263	RNaseP_bact_a links to Rfam database...	0.70	0.57	0.87	68	70422	14	3	7	4	52
ASE_00267	RNaseP_bact_a links to Rfam database...	0.84	0.77	0.91	68	45075	13	2	5	6	20
ASE_00270	RNaseP_bact_a links to Rfam database...	0.58	0.43	0.79	55	72320	19	2	13	4	73
ASE_00274	RNaseP_bact_a links to Rfam database...	0.68	0.60	0.78	62	55531	21	5	13	3	41
ASE_00279	RNaseP_bact_a links to Rfam database...	0.79	0.69	0.90	70	53223	11	3	5	3	31
ASE_00280	RNaseP_bact_a links to Rfam database...	0.74	0.66	0.82	65	51924	17	3	11	3	33
ASE_00281	RNaseP_bact_a links to Rfam database...	0.81	0.75	0.87	66	44475	12	3	7	2	22
ASE_00282	RNaseP_bact_a links to Rfam database...	0.70	0.54	0.90	69	77738	12	2	6	4	58
ASE_00283	RNaseP_bact_a links to Rfam database...	0.73	0.63	0.86	67	61698	14	2	9	3	40
ASE_00284	RNaseP_bact_a links to Rfam database...	0.77	0.66	0.91	71	58233	11	4	3	4	37
ASE_00285	RNaseP_bact_a links to Rfam database...	0.70	0.55	0.91	67	68932	11	2	5	4	55
ASE_00286	RNaseP_bact_a links to Rfam database...	0.81	0.73	0.89	67	46590	12	2	6	4	25
ASE_00287	RNaseP_bact_a links to Rfam database...	0.69	0.60	0.79	62	54868	20	1	15	4	41
ASE_00292	RNaseP_bact_a links to Rfam database...	0.72	0.62	0.83	86	81707	20	2	15	3	52
ASE_00294	RNaseP_bact_a links to Rfam database...	0.72	0.57	0.92	97	114375	13	2	7	4	74
ASE_00296	RNaseP_bact_a links to Rfam database...	0.72	0.61	0.86	88	91704	18	4	10	4	57
ASE_00297	RNaseP_bact_a links to Rfam database...	0.68	0.58	0.79	57	52903	19	4	11	4	41
ASE_00298	RNaseP_bact_a links to Rfam database...	0.72	0.61	0.85	69	67447	15	3	9	3	44
ASE_00305	RNaseP_bact_b links to Rfam database...	0.82	0.78	0.86	66	54538	22	1	10	11	19
ASE_00318	RNaseP_bact_b links to Rfam database...	0.75	0.66	0.85	78	80108	21	1	13	7	40
ASE_00321	RNaseP_bact_b links to Rfam database...	0.77	0.74	0.81	65	54535	23	1	14	8	23
ASE_00328	RNaseP_bact_b links to Rfam database...	0.81	0.75	0.88	84	72675	19	1	11	7	28
ASE_00332	RNaseP_bact_a links to Rfam database...	0.78	0.67	0.91	92	81709	12	3	6	3	46
ASE_00335	RNaseP_bact_b links to Rfam database...	0.77	0.70	0.85	81	75371	25	1	13	11	35
ASE_00340	RNaseP_bact_a links to Rfam database...	0.75	0.67	0.85	57	45989	17	1	9	7	28
ASE_00342	RNaseP_bact_a links to Rfam database...	0.89	0.83	0.96	95	62382	9	1	3	5	20
ASE_00353	RNaseP_bact_a links to Rfam database...	0.75	0.64	0.88	68	57893	14	2	7	5	39
ASE_00361	RNaseP_bact_a links to Rfam database...	0.69	0.53	0.89	67	75391	13	3	5	5	60
ASE_00362	RNaseP_bact_a links to Rfam database...	0.80	0.71	0.89	65	48132	14	2	6	6	26
ASE_00363	RNaseP_bact_a links to Rfam database...	0.76	0.68	0.84	64	51284	17	2	10	5	30
ASE_00364	RNaseP_bact_a links to Rfam database...	0.76	0.66	0.87	69	54206	15	3	7	5	36
ASE_00366	RNaseP_bact_a links to Rfam database...	0.76	0.67	0.87	66	58577	13	3	7	3	32
ASE_00367	RNaseP_bact_a links to Rfam database...	0.85	0.79	0.91	68	42996	11	2	5	4	18
ASE_00369	RNaseP_bact_a links to Rfam database...	0.79	0.69	0.90	74	55863	13	1	7	5	33
ASE_00372	RNaseP_bact_a links to Rfam database...	0.76	0.65	0.88	65	51929	15	1	8	6	35
ASE_00374	RNaseP_bact_a links to Rfam database...	0.86	0.80	0.93	70	44775	8	2	3	3	18
ASE_00376	RNaseP_bact_a links to Rfam database...	0.73	0.63	0.85	66	56875	15	1	11	3	39
ASE_00377	RNaseP_bact_a links to Rfam database...	0.76	0.65	0.88	70	57550	13	3	7	3	37
ASE_00382	RNaseP_bact_a links to Rfam database...	0.83	0.80	0.87	67	41828	16	2	8	6	17
ASE_00383	RNaseP_bact_a links to Rfam database...	0.77	0.66	0.90	69	54538	13	1	7	5	36
ASE_00384	RNaseP_bact_a links to Rfam database...	0.81	0.74	0.89	68	48440	13	2	6	5	24
ASE_00386	RNaseP_bact_a links to Rfam database...	0.79	0.71	0.88	68	50326	12	2	7	3	28
ASE_00387	RNaseP_bact_a links to Rfam database...	0.71	0.62	0.83	64	55868	17	2	11	4	40
ASE_00388	RNaseP_bact_a links to Rfam database...	0.80	0.73	0.87	65	45678	16	1	9	6	24
ASE_00390	RNaseP_bact_a links to Rfam database...	0.85	0.80	0.89	68	42119	11	2	6	3	17
ASE_00393	RNaseP_bact_a links to Rfam database...	0.74	0.68	0.82	63	47818	19	1	13	5	30
ASE_00394	RNaseP_bact_a links to Rfam database...	0.83	0.74	0.92	69	46896	10	2	4	4	24
ASE_00395	RNaseP_bact_a links to Rfam database...	0.83	0.79	0.87	66	41540	13	2	8	3	18
ASE_00396	RNaseP_bact_a links to Rfam database...	0.86	0.83	0.90	69	41539	12	3	5	4	14
ASE_00397	RNaseP_bact_a links to Rfam database...	0.75	0.64	0.88	67	54539	15	3	6	6	38
ASE_00398	RNaseP_bact_a links to Rfam database...	0.74	0.63	0.87	65	55870	13	1	9	3	39
ASE_00400	RNaseP_bact_a links to Rfam database...	0.79	0.67	0.92	71	57893	12	1	5	6	35
ASE_00401	RNaseP_bact_a links to Rfam database...	0.67	0.51	0.88	64	76955	13	2	7	4	62
ASE_00402	RNaseP_bact_a links to Rfam database...	0.85	0.80	0.89	68	42410	12	2	6	4	17
ASE_00403	RNaseP_bact_a links to Rfam database...	0.79	0.67	0.92	72	55867	12	1	5	6	35
ASE_00404	RNaseP_bact_a links to Rfam database...	0.85	0.80	0.89	68	42995	14	4	4	6	17
ASE_00406	RNaseP_bact_a links to Rfam database...	0.79	0.72	0.86	68	48749	14	2	9	3	26
ASE_00411	RNaseP_bact_a links to Rfam database...	0.70	0.67	0.72	60	49372	27	7	16	4	29
ASE_00412	RNaseP_bact_a links to Rfam database...	0.62	0.54	0.71	57	58231	28	5	18	5	48
ASE_00413	RNaseP_bact_a links to Rfam database...	0.76	0.73	0.79	59	44476	23	4	12	7	22
ASE_00416	RNaseP_bact_a links to Rfam database...	0.74	0.66	0.82	84	77319	23	4	14	5	43
ASE_00419	RNaseP_bact_a links to Rfam database...	0.72	0.61	0.84	63	54871	16	5	7	4	40
ASE_00422	RNaseP_bact_a links to Rfam database...	0.82	0.73	0.91	69	46895	13	1	6	6	25
ASE_00423	RNaseP_bact_a links to Rfam database...	0.75	0.71	0.80	77	56857	23	3	16	4	32
ASE_00427	RNaseP_nuc links to Rfam database...	0.35	0.30	0.40	14	40720	29	9	12	8	32
ASE_00428	RNaseP_bact_a links to Rfam database...	0.75	0.68	0.83	85	76533	21	4	14	3	40
ASE_00430	RNaseP_bact_a links to Rfam database...	0.75	0.66	0.85	64	46896	14	1	10	3	33
ASE_00437	RNaseP_bact_a links to Rfam database...	0.58	0.50	0.69	67	79304	33	1	29	3	68
ASE_00441	RNaseP_bact_a links to Rfam database...	0.70	0.57	0.86	64	64187	13	3	7	3	48
ASE_00448	RNaseP_bact_a links to Rfam database...	0.83	0.79	0.87	88	64160	15	3	10	2	24
ASE_00451	RNaseP_bact_a links to Rfam database...	0.81	0.73	0.91	91	70776	12	1	8	3	34
CRW_00256	SSU_rRNA_bacteria links to Rfam database...	0.82	0.78	0.87	363	1192324	70	13	40	17	105
CRW_00548	5S_rRNA links to Rfam database...	0.90	0.82	1.00	31	7350	3	0	0	3	7
CRW_00552	5S_rRNA links to Rfam database...	0.79	0.69	0.90	27	7110	5	0	3	2	12
CRW_00555	5S_rRNA links to Rfam database...	0.82	0.68	1.00	27	7599	2	0	0	2	13
CRW_00567	5S_rRNA links to Rfam database...	0.85	0.73	1.00	29	7474	2	0	0	2	11
CRW_00570	5S_rRNA links to Rfam database...	0.96	0.92	1.00	34	6869	3	0	0	3	3
CRW_00573	5S_rRNA links to Rfam database...	0.79	0.68	0.93	27	7111	4	0	2	2	13
CRW_00590	SSU_rRNA_bacteria links to Rfam database...	0.85	0.81	0.90	367	1119348	69	4	37	28	85
CRW_00997	SSU_rRNA_bacteria links to Rfam database...	0.83	0.81	0.86	374	1135845	75	15	44	16	90
CRW_01484	5S_rRNA links to Rfam database...	0.88	0.79	0.97	31	7471	2	0	1	1	8
CRW_01485	5S_rRNA links to Rfam database...	0.92	0.87	0.97	34	7468	5	0	1	4	5
CRW_01487	5S_rRNA links to Rfam database...	0.88	0.80	0.97	33	7469	2	0	1	1	8
CRW_01489	5S_rRNA links to Rfam database...	0.93	0.87	1.00	34	7469	3	0	0	3	5
CRW_01491	5S_rRNA links to Rfam database...	0.90	0.81	1.00	35	8350	0	0	0	0	8
CRW_01492	5S_rRNA links to Rfam database...	0.86	0.79	0.94	33	7591	3	0	2	1	9
CRW_01494	5S_rRNA links to Rfam database...	0.87	0.78	0.97	31	7108	2	0	1	1	9
CRW_01497	5S_rRNA links to Rfam database...	0.87	0.75	1.00	30	7110	0	0	0	0	10
CRW_01498	5S_rRNA links to Rfam database...	0.89	0.79	1.00	34	8094	1	0	0	1	9
CRW_01499	5S_rRNA links to Rfam database...	0.72	0.66	0.79	27	7967	8	0	7	1	14
CRW_01500	5S_rRNA links to Rfam database...	0.92	0.84	1.00	32	7718	5	0	0	5	6
CRW_01501	5S_rRNA links to Rfam database...	0.79	0.71	0.89	32	8479	5	0	4	1	13
CRW_01508	5S_rRNA links to Rfam database...	0.87	0.81	0.94	34	7965	3	0	2	1	8
CRW_01532	5S_rRNA links to Rfam database...	0.97	0.95	1.00	35	7105	2	0	0	2	2
CRW_01533	5S_rRNA links to Rfam database...	0.96	0.92	1.00	34	7106	1	0	0	1	3
CRW_01534	5S_rRNA links to Rfam database...	0.96	0.92	1.00	34	7106	3	0	0	3	3
CRW_01535	5S_rRNA links to Rfam database...	0.96	0.92	1.00	34	7106	2	0	0	2	3
CRW_01536	5S_rRNA links to Rfam database...	0.96	0.95	0.97	35	6985	3	0	1	2	2
CRW_01537	5S_rRNA links to Rfam database...	0.96	0.92	1.00	34	7106	2	0	0	2	3
CRW_01539	5S_rRNA links to Rfam database...	0.97	0.95	1.00	35	7105	2	0	0	2	2
CRW_01540	5S_rRNA links to Rfam database...	0.97	0.95	1.00	35	7105	2	0	0	2	2
CRW_01541	5S_rRNA links to Rfam database...	0.85	0.76	0.97	28	7111	3	0	1	2	9
CRW_01542	5S_rRNA links to Rfam database...	0.99	0.97	1.00	36	7104	2	0	0	2	1
CRW_01544	5S_rRNA links to Rfam database...	0.96	0.92	1.00	34	7106	2	0	0	2	3
CRW_01548	5S_rRNA links to Rfam database...	0.97	0.95	1.00	35	6986	2	0	0	2	2
CRW_01555	5S_rRNA links to Rfam database...	0.97	0.95	1.00	35	9010	2	0	0	2	2
CRW_01556	5S_rRNA links to Rfam database...	0.96	0.92	1.00	34	7106	3	0	0	3	3
CRW_01557	5S_rRNA links to Rfam database...	0.96	0.92	1.00	34	7106	2	0	0	2	3
CRW_01559	5S_rRNA links to Rfam database...	0.99	0.97	1.00	36	7224	3	0	0	3	1
CRW_01562	5S_rRNA links to Rfam database...	0.87	0.84	0.91	31	7106	4	0	3	1	6
CRW_01563	5S_rRNA links to Rfam database...	0.85	0.84	0.86	31	6867	6	0	5	1	6
CRW_01566	5S_rRNA links to Rfam database...	0.85	0.73	1.00	27	7113	2	0	0	2	10
CRW_01568	5S_rRNA links to Rfam database...	0.92	0.89	0.94	33	7105	4	0	2	2	4
CRW_01569	5S_rRNA links to Rfam database...	0.89	0.86	0.91	32	7105	4	0	3	1	5
CRW_01570	5S_rRNA links to Rfam database...	0.97	0.95	1.00	35	7105	2	0	0	2	2
CRW_01572	5S_rRNA links to Rfam database...	0.83	0.81	0.86	30	6986	8	0	5	3	7
CRW_01573	5S_rRNA links to Rfam database...	0.96	0.92	1.00	34	7226	2	0	0	2	3
CRW_01578	5S_rRNA links to Rfam database...	0.96	0.92	1.00	34	7106	3	0	0	3	3
CRW_01580	5S_rRNA links to Rfam database...	0.99	0.97	1.00	36	7104	2	0	0	2	1
CRW_01581	5S_rRNA links to Rfam database...	0.96	0.95	0.97	35	7104	2	0	1	1	2
CRW_01583	5S_rRNA links to Rfam database...	0.99	0.97	1.00	36	7104	1	0	0	1	1
CRW_01584	5S_rRNA links to Rfam database...	0.94	0.92	0.97	34	7105	3	0	1	2	3
CRW_01590	5S_rRNA links to Rfam database...	0.83	0.76	0.90	28	7109	5	0	3	2	9
CRW_01593	5S_rRNA links to Rfam database...	0.94	0.89	1.00	33	7107	1	0	0	1	4
CRW_01595	5S_rRNA links to Rfam database...	0.97	0.95	1.00	35	8480	3	0	0	3	2
CRW_01599	5S_rRNA links to Rfam database...	0.96	0.92	1.00	34	7106	2	0	0	2	3
CRW_01603	5S_rRNA links to Rfam database...	0.93	0.86	1.00	32	7108	2	0	0	2	5
CRW_01605	5S_rRNA links to Rfam database...	0.96	0.92	1.00	34	7106	3	0	0	3	3
CRW_01606	5S_rRNA links to Rfam database...	0.94	0.89	1.00	33	7107	2	0	0	2	4
CRW_01608	5S_rRNA links to Rfam database...	0.99	0.97	1.00	36	8349	2	0	0	2	1
CRW_01616	5S_rRNA links to Rfam database...	0.97	0.95	1.00	35	7105	2	0	0	2	2
CRW_01617	5S_rRNA links to Rfam database...	0.97	0.95	1.00	35	7105	2	0	0	2	2
CRW_01620	5S_rRNA links to Rfam database...	0.99	0.97	1.00	36	6985	3	0	0	3	1
CRW_01621	5S_rRNA links to Rfam database...	0.90	0.84	0.97	31	7108	3	0	1	2	6
CRW_01623	5S_rRNA links to Rfam database...	0.97	0.97	0.97	36	7103	3	0	1	2	1
CRW_01625	5S_rRNA links to Rfam database...	0.96	0.92	1.00	34	7106	2	0	0	2	3
PDB_00012	mir-TAR links to Rfam database...	1.00	1.00	1.00	7	399	2	0	0	2	0
PDB_00070	tRNA links to Rfam database...	0.93	0.88	1.00	21	2829	0	0	0	0	3
PDB_00213	Gammaretro_CES links to Rfam database...	0.84	0.71	1.00	29	5021	0	0	0	0	12
PDB_00229	tRNA links to Rfam database...	0.93	0.87	1.00	20	2755	0	0	0	0	3
PDB_00327	tRNA links to Rfam database...	0.98	0.96	1.00	22	3059	0	0	0	0	1
PDB_00362	tRNA links to Rfam database...	0.98	0.95	1.00	21	2829	0	0	0	0	1
PDB_00402	tRNA links to Rfam database...	0.96	0.91	1.00	21	2754	0	0	0	0	2
PDB_00431	tRNA links to Rfam database...	0.95	0.90	1.00	18	2193	0	0	0	0	2
PDB_00474	tRNA links to Rfam database...	0.96	0.91	1.00	21	2680	0	0	0	0	2
PDB_00553	mir-TAR links to Rfam database...	0.60	0.36	1.00	4	461	0	0	0	0	7
PDB_00571	tRNA links to Rfam database...	0.87	0.80	0.95	20	3300	1	1	0	0	5
PDB_00667	tRNA links to Rfam database...	0.98	0.95	1.00	21	2829	0	0	0	0	1
PDB_00741	Entero_5_CRE links to Rfam database...	0.84	0.71	1.00	12	691	0	0	0	0	5
PDB_00810	s2m links to Rfam database...	0.80	0.65	1.00	11	1070	0	0	0	0	6
PDB_00828	Purine links to Rfam database...	0.84	0.70	1.00	19	2466	2	0	0	2	8
PDB_00829	Purine links to Rfam database...	0.86	0.75	1.00	18	2260	2	0	0	2	6
PDB_00876	HIV_FE links to Rfam database...	0.56	0.40	0.80	8	980	2	0	2	0	12
PDB_01002	tRNA links to Rfam database...	0.95	0.90	1.00	19	2756	2	0	0	2	2
PDB_01020	Purine links to Rfam database...	0.86	0.74	1.00	17	2261	3	0	0	3	6
PDB_01050	UnaL2 links to Rfam database...	0.52	0.38	0.71	5	623	3	0	2	1	8
PDB_01053	tRNA links to Rfam database...	1.00	1.00	1.00	16	1362	0	0	0	0	0
PDB_01073	SAM links to Rfam database...	0.79	0.71	0.89	24	4344	4	2	1	1	10
PDB_01114	TPP links to Rfam database...	0.84	0.74	0.95	20	2829	1	0	1	0	7
PDB_01120	SSU_rRNA_bacteria links to Rfam database...	0.78	0.68	0.88	359	1204721	72	7	41	24	168
PDB_01152	HIV_FS2 links to Rfam database...	0.84	0.71	1.00	10	551	0	0	0	0	4
PDB_01236	ykoK links to Rfam database...	0.87	0.76	1.00	41	11587	2	0	0	2	13
RFA_00389	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	2	0	0	2	1
RFA_00390	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	1	0	0	1	1
RFA_00391	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	2	0	0	2	1
RFA_00396	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00402	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	1	0	0	1	0
RFA_00409	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	2	0	0	2	1
RFA_00416	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1471	2	0	0	2	1
RFA_00433	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00434	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00436	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	1	0	0	1	1
RFA_00440	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1470	1	0	0	1	0
RFA_00442	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	1	0	0	1	0
RFA_00444	Hammerhead_3 links to Rfam database...	0.93	0.87	1.00	13	1527	0	0	0	0	2
RFA_00583	Y_RNA links to Rfam database...	0.97	0.93	1.00	14	4936	1	0	0	1	1
RFA_00584	Y_RNA links to Rfam database...	0.93	0.87	1.00	13	2913	7	0	0	7	2
RFA_00585	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4836	5	0	0	5	0
RFA_00586	Y_RNA links to Rfam database...	0.97	0.93	1.00	14	3902	1	0	0	1	1
RFA_00587	Y_RNA links to Rfam database...	0.97	0.93	1.00	14	4837	3	0	0	3	1
RFA_00588	Y_RNA links to Rfam database...	0.97	0.93	1.00	14	4546	1	0	0	1	1
RFA_00589	Y_RNA links to Rfam database...	0.97	0.93	1.00	14	4357	5	0	0	5	1
RFA_00594	Y_RNA links to Rfam database...	0.90	0.87	0.93	13	2761	2	0	1	1	2
RFA_00596	Y_RNA links to Rfam database...	0.93	0.87	1.00	13	5982	2	0	0	2	2
RFA_00599	Telomerase-vert links to Rfam database...	0.86	0.80	0.93	89	101379	16	3	4	9	22
RFA_00601	Telomerase-vert links to Rfam database...	0.77	0.68	0.89	77	99148	20	1	9	10	37
RFA_00658	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	1127	1	0	1	0	14
RFA_00664	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	989	1	0	1	0	14
RFA_00667	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	989	1	0	1	0	14
RFA_00668	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	989	1	0	1	0	14
RFA_00672	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	899	4	0	4	0	13
RFA_00673	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	1127	1	0	1	0	14
RFA_00674	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	1124	4	0	4	0	14
RFA_00675	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	989	1	0	1	0	14
RFA_00677	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	989	1	0	1	0	14
RFA_00678	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	945	1	0	1	0	14
RFA_00680	Hammerhead_1 links to Rfam database...	0.31	0.14	0.67	2	1125	1	0	1	0	12
RFA_00704	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	989	1	0	1	0	14
RFA_00707	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	1032	3	0	3	0	14
RFA_00715	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	945	1	0	1	0	14
RFA_00717	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	902	1	0	1	0	14
RFA_00730	s2m links to Rfam database...	0.78	0.75	0.82	9	892	2	0	2	0	3
RFA_00731	s2m links to Rfam database...	0.78	0.75	0.82	9	892	2	0	2	0	3
RFA_00733	s2m links to Rfam database...	0.78	0.75	0.82	9	892	2	0	2	0	3
RFA_00734	s2m links to Rfam database...	0.78	0.75	0.82	9	892	2	0	2	0	3
RFA_00736	s2m links to Rfam database...	0.78	0.75	0.82	9	892	2	0	2	0	3
RFA_00737	s2m links to Rfam database...	0.78	0.75	0.82	9	892	3	0	2	1	3
RFA_00745	s2m links to Rfam database...	0.96	0.92	1.00	11	935	0	0	0	0	1
RFA_00749	s2m links to Rfam database...	0.78	0.75	0.82	9	892	2	0	2	0	3
RFA_00758	s2m links to Rfam database...	0.78	0.75	0.82	9	892	3	0	2	1	3
RFA_00762	s2m links to Rfam database...	0.78	0.75	0.82	9	892	2	0	2	0	3
RFA_00763	s2m links to Rfam database...	0.96	0.92	1.00	11	892	1	0	0	1	1
RFA_00764	s2m links to Rfam database...	0.96	0.92	1.00	11	892	1	0	0	1	1
RFA_00765	s2m links to Rfam database...	0.78	0.75	0.82	9	892	2	0	2	0	3
RFA_00786	Gammaretro_CES links to Rfam database...	0.95	0.91	1.00	29	5021	0	0	0	0	3
RFA_00791	Gammaretro_CES links to Rfam database...	0.90	0.88	0.93	28	5121	2	0	2	0	4
RFA_00792	Gammaretro_CES links to Rfam database...	0.89	0.84	0.93	27	5021	2	0	2	0	5
RFA_00801	Gammaretro_CES links to Rfam database...	0.89	0.84	0.93	27	5021	2	0	2	0	5
SPR_00007	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00009	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	1	0	0	1	0
SPR_00010	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00012	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	1	0	0	1	0
SPR_00013	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	1	0	0	1	0
SPR_00016	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00017	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00025	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	1	0	0	1	0
SPR_00026	tRNA links to Rfam database...	0.95	0.95	0.95	20	2905	2	0	1	1	1
SPR_00027	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00036	tRNA links to Rfam database...	0.92	0.90	0.95	18	2756	2	0	1	1	2
SPR_00045	tRNA links to Rfam database...	0.95	0.91	1.00	20	2830	0	0	0	0	2
SPR_00064	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00065	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00066	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00068	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00070	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00074	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	1	0	0	1	0
SPR_00079	tRNA links to Rfam database...	0.97	0.95	1.00	18	2467	1	0	0	1	1
SPR_00086	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00087	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	1	0	0	1	0
SPR_00088	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	1	0	0	1	0
SPR_00089	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	1	0	0	1	0
SPR_00090	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	1	0	0	1	0
SPR_00091	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	1	0	0	1	0
SPR_00095	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00111	tRNA links to Rfam database...	1.00	1.00	1.00	21	2680	0	0	0	0	0
SPR_00112	tRNA links to Rfam database...	1.00	1.00	1.00	21	2680	0	0	0	0	0
SPR_00115	tRNA links to Rfam database...	1.00	1.00	1.00	21	2680	0	0	0	0	0
SPR_00117	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00139	tRNA links to Rfam database...	0.95	0.90	1.00	19	2907	1	0	0	1	2
SPR_00153	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00155	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00156	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00176	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	1	0	0	1	0
SPR_00177	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00178	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00191	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00200	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00224	tRNA links to Rfam database...	1.00	1.00	1.00	20	3721	3	0	0	3	0
SPR_00271	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00273	tRNA links to Rfam database...	0.95	0.95	0.95	20	2829	1	0	1	0	1
SPR_00276	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00277	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00294	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00295	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	0	0	0	0	0
SPR_00314	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00315	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00317	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	1	0	0	1	0
SPR_00318	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00321	tRNA links to Rfam database...	1.00	1.00	1.00	21	2982	0	0	0	0	0
SPR_00333	tRNA links to Rfam database...	0.98	0.95	1.00	20	2755	0	0	0	0	1
SPR_00352	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00353	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00357	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00358	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	1	0	0	1	0
SPR_00370	tRNA links to Rfam database...	0.93	0.90	0.95	19	2755	1	0	1	0	2
SPR_00386	tRNA links to Rfam database...	1.00	1.00	1.00	20	4166	0	0	0	0	0
SPR_00414	tRNA links to Rfam database...	0.98	0.95	1.00	20	3550	3	0	0	3	1
SPR_00415	tRNA links to Rfam database...	0.98	0.95	1.00	20	3550	3	0	0	3	1
SPR_00417	tRNA links to Rfam database...	0.95	0.91	1.00	20	3550	3	0	0	3	2
SPR_00418	tRNA links to Rfam database...	0.95	0.91	1.00	20	3550	3	0	0	3	2
SPR_00434	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00435	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00436	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00437	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	0	0	0	0	0
SPR_00438	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	0	0	0	0	0
SPR_00452	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00455	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00456	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00476	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	0	0	0	0	0
SPR_00479	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00482	tRNA links to Rfam database...	1.00	1.00	1.00	21	2680	0	0	0	0	0
SPR_00483	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00487	tRNA links to Rfam database...	0.86	0.82	0.90	18	2681	2	0	2	0	4
SPR_00493	tRNA links to Rfam database...	0.95	0.91	1.00	20	2755	0	0	0	0	2
SPR_00496	tRNA links to Rfam database...	0.98	0.95	1.00	20	2755	0	0	0	0	1
SPR_00497	tRNA links to Rfam database...	0.98	0.95	1.00	20	2755	0	0	0	0	1
SPR_00502	tRNA links to Rfam database...	0.98	0.95	1.00	20	2906	0	0	0	0	1
SPR_00504	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	0	0	0	0	0
SPR_00505	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	1	0	0	1	0
SPR_00506	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00509	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00512	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	1	0	0	1	0
SPR_00513	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	1	0	0	1	0
SPR_00518	tRNA links to Rfam database...	0.97	0.95	1.00	19	2907	0	0	0	0	1
SPR_00548	tRNA links to Rfam database...	0.98	0.95	1.00	20	3383	1	0	0	1	1
SPR_00557	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00561	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00590	tRNA links to Rfam database...	1.00	1.00	1.00	20	2983	1	0	0	1	0
SPR_00593	tRNA links to Rfam database...	1.00	1.00	1.00	19	2756	1	0	0	1	0
SPR_00595	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	0	0	0	0	0
SPR_00598	tRNA links to Rfam database...	0.98	0.95	1.00	20	2983	0	0	0	0	1
SPR_00610	tRNA links to Rfam database...	0.93	0.90	0.95	19	2536	1	0	1	0	2
SPR_00620	tRNA links to Rfam database...	0.98	0.95	1.00	20	2983	0	0	0	0	1
SPR_00721	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00722	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	2	0	0	2	0
SPR_00758	tRNA links to Rfam database...	1.00	1.00	1.00	21	2982	0	0	0	0	0
SPR_00760	tRNA links to Rfam database...	1.00	1.00	1.00	21	3549	0	0	0	0	0
SPR_00777	tRNA links to Rfam database...	1.00	1.00	1.00	20	2608	1	0	0	1	0
SPR_00867	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00868	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00943	tRNA links to Rfam database...	1.00	1.00	1.00	20	2536	0	0	0	0	0
SPR_00957	tRNA links to Rfam database...	1.00	1.00	1.00	21	2982	0	0	0	0	0
SPR_01040	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	0	0	0	0	0
SPR_01088	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_01095	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_01106	tRNA links to Rfam database...	1.00	1.00	1.00	21	2535	0	0	0	0	0
SPR_01117	tRNA links to Rfam database...	0.98	0.95	1.00	20	2983	0	0	0	0	1
SPR_01157	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	0	0	0	0	0
SRP_00006	Metazoa_SRP links to Rfam database...	0.91	0.84	0.98	85	45666	6	0	2	4	16
SRP_00008	Bacteria_small_SRP links to Rfam database...	0.49	0.24	1.00	6	2920	0	0	0	0	19
SRP_00011	Plant_SRP links to Rfam database...	0.78	0.73	0.84	76	46269	22	0	15	7	28
SRP_00015	Plant_SRP links to Rfam database...	0.81	0.75	0.87	74	46275	21	0	11	10	25
SRP_00020	Bacteria_small_SRP links to Rfam database...	0.55	0.30	1.00	10	5555	0	0	0	0	23
SRP_00024	Bacteria_large_SRP links to Rfam database...	0.46	0.25	0.85	22	37649	4	0	4	0	65
SRP_00026	Bacteria_large_SRP links to Rfam database...	0.52	0.31	0.90	27	36826	4	0	3	1	61
SRP_00027	Bacteria_large_SRP links to Rfam database...	0.53	0.31	0.90	27	37098	3	0	3	0	60
SRP_00030	Bacteria_large_SRP links to Rfam database...	0.52	0.31	0.90	27	36826	3	0	3	0	61
SRP_00031	Bacteria_large_SRP links to Rfam database...	0.53	0.31	0.90	28	36284	4	0	3	1	61
SRP_00037	Bacteria_large_SRP links to Rfam database...	0.54	0.32	0.90	28	36554	3	0	3	0	59
SRP_00038	Bacteria_small_SRP links to Rfam database...	0.39	0.18	0.86	6	5043	2	0	1	1	27
SRP_00042	Bacteria_small_SRP links to Rfam database...	0.85	0.76	0.95	19	3985	2	0	1	1	6
SRP_00044	Bacteria_small_SRP links to Rfam database...	0.43	0.19	1.00	6	6099	0	0	0	0	26
SRP_00050	Metazoa_SRP links to Rfam database...	0.95	0.92	0.99	91	44758	6	0	1	5	8
SRP_00051	Bacteria_small_SRP links to Rfam database...	0.41	0.20	0.86	6	5453	2	0	1	1	24
SRP_00054	Bacteria_small_SRP links to Rfam database...	0.40	0.19	0.86	6	5558	2	0	1	1	26
SRP_00057	Bacteria_small_SRP links to Rfam database...	0.41	0.17	1.00	6	6322	0	0	0	0	29
SRP_00058	Bacteria_small_SRP links to Rfam database...	0.40	0.21	0.78	7	5769	3	0	2	1	27
SRP_00066	Metazoa_SRP links to Rfam database...	0.79	0.71	0.89	71	45371	17	0	9	8	29
SRP_00072	Bacteria_small_SRP links to Rfam database...	0.45	0.21	1.00	6	6322	0	0	0	0	23
SRP_00074	Bacteria_small_SRP links to Rfam database...	0.45	0.21	1.00	6	6549	0	0	0	0	23
SRP_00075	Bacteria_small_SRP links to Rfam database...	0.42	0.18	1.00	6	5559	0	0	0	0	28
SRP_00077	Bacteria_small_SRP links to Rfam database...	0.40	0.16	1.00	6	6664	0	0	0	0	31
SRP_00084	Bacteria_small_SRP links to Rfam database...	0.39	0.18	0.86	6	5453	1	0	1	0	28
SRP_00086	Metazoa_SRP links to Rfam database...	0.88	0.83	0.94	83	44165	8	0	5	3	17
SRP_00088	Bacteria_large_SRP links to Rfam database...	0.49	0.28	0.86	25	34162	5	0	4	1	64
SRP_00089	Bacteria_large_SRP links to Rfam database...	0.52	0.30	0.90	27	35748	4	0	3	1	63
SRP_00090	Bacteria_large_SRP links to Rfam database...	0.52	0.30	0.90	27	35481	3	0	3	0	63
SRP_00094	Bacteria_small_SRP links to Rfam database...	0.58	0.33	1.00	8	4087	0	0	0	0	16
SRP_00095	Bacteria_small_SRP links to Rfam database...	0.45	0.24	0.86	6	3998	1	0	1	0	19
SRP_00098	Bacteria_small_SRP links to Rfam database...	0.40	0.16	1.00	6	6435	0	0	0	0	31
SRP_00102	Metazoa_SRP links to Rfam database...	0.82	0.75	0.90	76	44467	12	0	8	4	25
SRP_00103	Metazoa_SRP links to Rfam database...	0.82	0.73	0.93	74	45371	9	0	6	3	28
SRP_00105	Bacteria_small_SRP links to Rfam database...	0.42	0.18	1.00	6	5559	0	0	0	0	28
SRP_00107	Bacteria_small_SRP links to Rfam database...	0.56	0.32	1.00	6	3649	0	0	0	0	13
SRP_00121	Bacteria_small_SRP links to Rfam database...	0.49	0.24	1.00	6	4272	0	0	0	0	19
SRP_00128	Bacteria_small_SRP links to Rfam database...	0.41	0.17	1.00	6	6780	0	0	0	0	30
SRP_00134	Bacteria_large_SRP links to Rfam database...	0.49	0.24	1.00	7	5988	0	0	0	0	22
SRP_00141	Bacteria_small_SRP links to Rfam database...	0.35	0.12	1.00	5	6323	1	0	0	1	36
SRP_00152	Plant_SRP links to Rfam database...	0.85	0.80	0.90	82	45662	20	0	9	11	21
SRP_00161	Bacteria_small_SRP links to Rfam database...	0.52	0.27	1.00	6	2844	0	0	0	0	16
SRP_00163	Bacteria_small_SRP links to Rfam database...	0.48	0.23	1.00	6	3480	0	0	0	0	20
SRP_00164	Bacteria_small_SRP links to Rfam database...	0.38	0.17	0.86	6	6896	1	0	1	0	29
SRP_00170	Bacteria_small_SRP links to Rfam database...	0.85	0.76	0.95	19	4075	2	0	1	1	6
SRP_00171	Metazoa_SRP links to Rfam database...	0.55	0.42	0.71	37	45399	23	3	12	8	51
SRP_00173	Bacteria_large_SRP links to Rfam database...	0.52	0.30	0.90	27	38196	3	0	3	0	63
SRP_00174	Bacteria_large_SRP links to Rfam database...	0.52	0.31	0.87	27	38750	6	0	4	2	59
SRP_00178	Plant_SRP links to Rfam database...	0.85	0.78	0.93	80	45667	17	0	6	11	22
SRP_00179	Plant_SRP links to Rfam database...	0.86	0.80	0.92	84	45965	15	0	7	8	21
SRP_00181	Plant_SRP links to Rfam database...	0.80	0.74	0.86	75	45969	21	0	12	9	27
SRP_00182	Plant_SRP links to Rfam database...	0.89	0.84	0.93	85	45965	13	0	6	7	16
SRP_00184	Plant_SRP links to Rfam database...	0.83	0.79	0.87	79	45965	24	0	12	12	21
SRP_00188	Plant_SRP links to Rfam database...	0.85	0.81	0.89	64	31053	13	0	8	5	15
SRP_00194	Bacteria_small_SRP links to Rfam database...	0.44	0.24	0.83	5	3234	2	0	1	1	16
SRP_00200	Bacteria_small_SRP links to Rfam database...	0.41	0.17	1.00	6	6897	0	0	0	0	30
SRP_00209	Bacteria_small_SRP links to Rfam database...	0.64	0.41	1.00	11	4645	0	0	0	0	16
SRP_00213	Bacteria_small_SRP links to Rfam database...	0.56	0.32	1.00	8	4178	0	0	0	0	17
SRP_00215	Bacteria_small_SRP links to Rfam database...	0.49	0.24	1.00	6	3234	0	0	0	0	19
SRP_00228	Metazoa_SRP links to Rfam database...	0.92	0.86	0.99	82	45368	10	0	1	9	13
SRP_00231	Bacteria_small_SRP links to Rfam database...	0.39	0.18	0.86	6	5453	1	0	1	0	28
SRP_00233	Bacteria_small_SRP links to Rfam database...	0.39	0.18	0.86	6	5144	2	0	1	1	27
SRP_00234	Bacteria_large_SRP links to Rfam database...	0.53	0.31	0.90	27	36285	4	0	3	1	59
SRP_00243	Bacteria_small_SRP links to Rfam database...	0.44	0.19	1.00	6	5145	0	0	0	0	25
SRP_00244	Bacteria_small_SRP links to Rfam database...	0.36	0.13	1.00	5	6898	1	0	0	1	34
SRP_00250	Bacteria_small_SRP links to Rfam database...	0.41	0.17	1.00	6	6780	0	0	0	0	30
SRP_00251	Bacteria_small_SRP links to Rfam database...	0.41	0.17	1.00	6	7015	0	0	0	0	30
SRP_00266	Bacteria_small_SRP links to Rfam database...	0.45	0.21	1.00	6	4650	0	0	0	0	23
SRP_00268	Bacteria_small_SRP links to Rfam database...	0.82	0.70	0.95	19	4166	2	0	1	1	8
SRP_00269	Bacteria_small_SRP links to Rfam database...	0.43	0.18	1.00	6	5044	1	0	0	1	27
SRP_00270	Bacteria_small_SRP links to Rfam database...	0.37	0.16	0.83	5	4650	2	0	1	1	26
SRP_00271	Bacteria_small_SRP links to Rfam database...	0.50	0.25	1.00	6	3234	0	0	0	0	18
SRP_00273	Bacteria_small_SRP links to Rfam database...	0.48	0.25	0.91	10	6775	1	0	1	0	30
SRP_00274	Bacteria_small_SRP links to Rfam database...	0.40	0.16	1.00	6	6897	0	0	0	0	32
SRP_00295	Bacteria_small_SRP links to Rfam database...	0.36	0.13	1.00	5	6898	1	0	0	1	33
SRP_00303	Bacteria_small_SRP links to Rfam database...	0.43	0.19	1.00	6	6664	0	0	0	0	26
SRP_00308	Bacteria_large_SRP links to Rfam database...	0.29	0.13	0.69	11	36299	5	0	5	0	77
SRP_00310	Bacteria_small_SRP links to Rfam database...	0.51	0.26	1.00	6	2920	0	0	0	0	17
SRP_00312	Bacteria_small_SRP links to Rfam database...	0.84	0.74	0.95	20	4165	2	0	1	1	7
SRP_00315	Bacteria_small_SRP links to Rfam database...	0.59	0.35	1.00	8	2918	0	0	0	0	15
SRP_00317	Metazoa_SRP links to Rfam database...	0.92	0.87	0.98	85	45063	7	0	2	5	13
SRP_00318	Bacteria_small_SRP links to Rfam database...	0.51	0.26	1.00	6	2997	0	0	0	0	17
SRP_00325	Bacteria_small_SRP links to Rfam database...	0.43	0.21	0.88	7	4363	2	0	1	1	26
SRP_00326	Bacteria_small_SRP links to Rfam database...	0.40	0.16	1.00	5	5045	1	0	0	1	26
SRP_00333	Bacteria_small_SRP links to Rfam database...	0.42	0.18	1.00	6	5145	0	0	0	0	28
SRP_00335	Bacteria_large_SRP links to Rfam database...	0.39	0.15	1.00	6	35239	0	0	0	0	33
SRP_00337	Bacteria_large_SRP links to Rfam database...	0.54	0.32	0.91	29	35479	4	0	3	1	62
SRP_00338	Bacteria_small_SRP links to Rfam database...	0.41	0.17	1.00	6	5454	0	0	0	0	30
SRP_00341	Bacteria_small_SRP links to Rfam database...	0.44	0.19	1.00	6	4747	0	0	0	0	25
SRP_00342	Bacteria_small_SRP links to Rfam database...	0.49	0.24	1.00	6	3999	0	0	0	0	19
SRP_00347	Metazoa_SRP links to Rfam database...	0.88	0.82	0.95	79	46582	15	0	4	11	17
SRP_00350	Bacteria_small_SRP links to Rfam database...	0.84	0.74	0.95	20	3895	1	0	1	0	7
SRP_00357	Bacteria_small_SRP links to Rfam database...	0.41	0.17	1.00	6	5350	0	0	0	0	30
SRP_00358	Bacteria_small_SRP links to Rfam database...	0.41	0.17	1.00	6	6322	0	0	0	0	29
SRP_00367	Bacteria_small_SRP links to Rfam database...	0.41	0.17	1.00	6	6780	0	0	0	0	29
SRP_00368	Metazoa_SRP links to Rfam database...	0.89	0.82	0.98	80	43874	9	0	2	7	18
SRP_00369	Bacteria_small_SRP links to Rfam database...	0.41	0.17	1.00	6	5772	0	0	0	0	29
SRP_00383	Bacteria_small_SRP links to Rfam database...	0.50	0.25	1.00	6	3234	0	0	0	0	18
TMR_00017	tmRNA links to Rfam database...	0.71	0.55	0.92	56	67100	8	1	4	3	46
TMR_00018	tmRNA links to Rfam database...	0.63	0.52	0.76	48	64557	21	6	9	6	44
TMR_00038	tmRNA links to Rfam database...	0.61	0.52	0.73	57	71175	26	5	16	5	53
TMR_00042	tmRNA links to Rfam database...	0.62	0.49	0.79	48	62774	13	4	9	0	50
TMR_00046	tmRNA links to Rfam database...	0.46	0.36	0.58	35	62775	26	4	21	1	61
TMR_00048	tmRNA links to Rfam database...	0.63	0.52	0.77	49	64916	16	7	8	1	46
TMR_00080	tmRNA links to Rfam database...	0.64	0.51	0.80	49	70439	13	7	5	1	47
TMR_00082	tmRNA links to Rfam database...	0.57	0.45	0.73	43	67837	20	6	10	4	53
TMR_00123	tmRNA links to Rfam database...	0.68	0.52	0.88	53	66370	12	1	6	5	48
TMR_00137	tmRNA links to Rfam database...	0.69	0.60	0.79	53	61008	20	7	7	6	36
TMR_00142	tmRNA links to Rfam database...	0.50	0.40	0.61	41	70809	31	10	16	5	61
TMR_00207	tmRNA links to Rfam database...	0.60	0.45	0.81	46	72333	18	1	10	7	57
TMR_00257	tmRNA links to Rfam database...	0.71	0.58	0.88	57	67096	13	3	5	5	41
TMR_00271	tmRNA links to Rfam database...	0.59	0.48	0.72	44	64200	19	6	11	2	47
TMR_00332	tmRNA links to Rfam database...	0.70	0.56	0.89	55	67099	12	2	5	5	44
TMR_00366	tmRNA links to Rfam database...	0.48	0.41	0.57	41	67824	35	9	22	4	59
TMR_00378	tmRNA links to Rfam database...	0.50	0.41	0.62	40	67831	34	8	17	9	57
TMR_00399	tmRNA links to Rfam database...	0.70	0.61	0.81	57	64910	21	6	7	8	37
TMR_00404	tmRNA links to Rfam database...	0.54	0.45	0.66	41	67466	22	8	13	1	51
TMR_00427	tmRNA links to Rfam database...	0.56	0.43	0.74	42	67471	15	9	6	0	55
TMR_00443	tmRNA links to Rfam database...	0.76	0.63	0.93	65	67091	11	2	3	6	39
TMR_00451	tmRNA links to Rfam database...	0.57	0.51	0.65	45	63477	32	11	13	8	44
TMR_00458	tmRNA links to Rfam database...	0.67	0.57	0.78	53	63478	19	7	8	4	40
TMR_00469	tmRNA links to Rfam database...	0.73	0.61	0.88	61	64551	11	4	4	3	39
TMR_00472	tmRNA links to Rfam database...	0.67	0.58	0.79	56	64549	19	9	6	4	41
TMR_00519	tmRNA links to Rfam database...	0.63	0.54	0.74	51	63121	25	7	11	7	44
TMR_00520	tmRNA links to Rfam database...	0.65	0.55	0.78	54	63121	18	1	14	3	45
TMR_00522	tmRNA links to Rfam database...	0.62	0.51	0.77	49	63126	19	6	9	4	48
TMR_00528	tmRNA links to Rfam database...	0.62	0.51	0.75	49	63125	20	5	11	4	48
TMR_00540	tmRNA links to Rfam database...	0.69	0.58	0.83	60	73464	14	7	5	2	44
TMR_00568	tmRNA links to Rfam database...	0.75	0.66	0.87	65	60651	16	2	8	6	34
TMR_00571	tmRNA links to Rfam database...	0.77	0.68	0.88	67	60650	15	2	7	6	32
TMR_00580	tmRNA links to Rfam database...	0.76	0.65	0.88	65	60652	15	2	7	6	35
TMR_00584	tmRNA links to Rfam database...	0.78	0.66	0.93	64	61006	13	2	3	8	33
TMR_00586	tmRNA links to Rfam database...	0.72	0.63	0.82	61	61001	19	5	8	6	36
TMR_00616	tmRNA links to Rfam database...	0.68	0.57	0.81	56	67092	17	7	6	4	43
TMR_00699	tmRNA links to Rfam database...	0.69	0.54	0.87	55	67098	9	1	7	1	47
TMR_00702	tmRNA links to Rfam database...	0.60	0.45	0.79	45	67104	17	3	9	5	55
TMR_00703	tmRNA links to Rfam database...	0.71	0.59	0.87	58	67461	14	3	6	5	41

^top

Performance of PknotsRG - scored lower in this pairwise comparison

1. Total counts & total scores for PknotsRG

Total Base Pair Counts
Total TP	18891
Total TN	19628949
Total FP	15923
Total FP CONTRA	2039
Total FP INCONS	12319
Total FP COMP	1565
Total FN	15386

Total Scores
MCC	0.559
Average MCC ± 95% Confidence Intervals	0.613 ± 0.021
Sensitivity	0.551
Positive Predictive Value	0.568
Nr of predictions	556

^top

2. Individual counts for PknotsRG [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00004	RNaseP_bact_a links to Rfam database...	0.70	0.71	0.70	69	47796	32	9	21	2	28
ASE_00005	RNaseP_bact_a links to Rfam database...	0.63	0.58	0.68	68	57870	38	0	32	6	49
ASE_00006	RNaseP_bact_a links to Rfam database...	0.57	0.58	0.57	54	47491	44	7	34	3	39
ASE_00007	RNaseP_bact_a links to Rfam database...	0.57	0.55	0.61	60	59586	43	1	38	4	50
ASE_00012	RNaseP_bact_a links to Rfam database...	0.58	0.54	0.61	67	73811	49	2	40	7	56
ASE_00018	RNaseP_bact_a links to Rfam database...	0.80	0.76	0.84	102	80479	22	3	17	2	32
ASE_00020	RNaseP_bact_a links to Rfam database...	0.53	0.52	0.53	66	73796	58	8	50	0	60
ASE_00021	RNaseP_bact_a links to Rfam database...	0.57	0.54	0.61	86	104056	61	7	47	7	74
ASE_00022	RNaseP_bact_b links to Rfam database...	0.46	0.44	0.48	54	82915	65	6	53	6	70
ASE_00028	RNaseP_bact_b links to Rfam database...	0.59	0.56	0.61	71	84550	53	4	41	8	55
ASE_00035	RNaseP_bact_a links to Rfam database...	0.30	0.28	0.32	33	70398	76	11	58	7	85
ASE_00037	RNaseP_bact_a links to Rfam database...	0.24	0.23	0.25	25	59239	79	3	73	3	85
ASE_00040	RNaseP_bact_a links to Rfam database...	0.50	0.47	0.52	63	78882	64	5	53	6	70
ASE_00041	RNaseP_bact_a links to Rfam database...	0.52	0.50	0.55	54	57532	48	2	42	4	54
ASE_00042	RNaseP_bact_a links to Rfam database...	0.53	0.50	0.58	72	89975	54	3	50	1	73
ASE_00044	RNaseP_bact_a links to Rfam database...	0.69	0.68	0.70	71	54513	35	3	28	4	34
ASE_00045	RNaseP_bact_b links to Rfam database...	0.66	0.66	0.65	53	47197	36	7	21	8	27
ASE_00064	RNaseP_bact_a links to Rfam database...	0.43	0.43	0.44	38	45364	53	5	44	4	51
ASE_00068	RNaseP_bact_a links to Rfam database...	0.24	0.24	0.25	20	37596	59	5	54	0	65
ASE_00074	RNaseP_bact_a links to Rfam database...	0.58	0.57	0.59	68	67781	47	6	41	0	51
ASE_00075	RNaseP_bact_a links to Rfam database...	0.65	0.59	0.71	96	108676	46	2	37	7	66
ASE_00077	RNaseP_bact_a links to Rfam database...	0.25	0.24	0.25	21	45067	67	7	55	5	65
ASE_00078	RNaseP_bact_a links to Rfam database...	0.68	0.67	0.68	56	42989	31	5	21	5	27
ASE_00080	RNaseP_bact_a links to Rfam database...	0.46	0.44	0.48	54	71519	61	5	53	3	69
ASE_00081	RNaseP_bact_a links to Rfam database...	0.53	0.53	0.54	51	49676	44	5	38	1	46
ASE_00082	RNaseP_bact_a links to Rfam database...	0.50	0.47	0.54	54	70400	60	1	45	14	62
ASE_00083	RNaseP_bact_a links to Rfam database...	0.79	0.75	0.83	82	62382	26	2	15	9	28
ASE_00084	RNaseP_bact_a links to Rfam database...	0.70	0.69	0.72	68	53534	29	6	20	3	31
ASE_00090	RNaseP_bact_a links to Rfam database...	0.59	0.59	0.59	60	55509	47	2	40	5	41
ASE_00092	RNaseP_bact_a links to Rfam database...	0.73	0.70	0.76	79	63442	30	0	25	5	34
ASE_00099	RNaseP_bact_a links to Rfam database...	0.51	0.50	0.53	60	64506	56	6	48	2	60
ASE_00104	RNaseP_bact_a links to Rfam database...	0.65	0.63	0.68	75	64151	36	3	32	1	44
ASE_00105	RNaseP_bact_a links to Rfam database...	0.38	0.36	0.40	40	64160	66	9	52	5	71
ASE_00107	RNaseP_bact_a links to Rfam database...	0.47	0.45	0.50	57	73039	57	2	55	0	70
ASE_00114	RNaseP_bact_b links to Rfam database...	0.33	0.31	0.34	24	45381	57	8	38	11	53
ASE_00115	RNaseP_bact_a links to Rfam database...	0.48	0.47	0.49	47	54520	56	1	47	8	54
ASE_00118	RNaseP_bact_a links to Rfam database...	0.45	0.44	0.45	45	60627	57	4	50	3	57
ASE_00119	RNaseP_bact_a links to Rfam database...	0.67	0.65	0.69	70	62734	33	1	30	2	38
ASE_00123	RNaseP_bact_a links to Rfam database...	0.40	0.39	0.42	33	38424	50	2	44	4	52
ASE_00125	RNaseP_bact_a links to Rfam database...	0.64	0.63	0.65	55	39255	30	4	26	0	33
ASE_00126	RNaseP_bact_a links to Rfam database...	0.79	0.79	0.78	65	40387	21	3	15	3	17
ASE_00128	RNaseP_bact_a links to Rfam database...	0.76	0.73	0.80	73	53210	25	2	16	7	27
ASE_00129	RNaseP_bact_a links to Rfam database...	0.52	0.50	0.53	56	62730	53	5	44	4	55
ASE_00131	RNaseP_bact_a links to Rfam database...	0.64	0.58	0.72	49	39272	29	0	19	10	36
ASE_00134	RNaseP_bact_a links to Rfam database...	0.56	0.57	0.55	54	50305	49	4	40	5	41
ASE_00135	RNaseP_bact_a links to Rfam database...	0.47	0.46	0.48	50	63085	59	8	47	4	59
ASE_00136	RNaseP_bact_a links to Rfam database...	0.49	0.47	0.51	43	48121	50	1	40	9	49
ASE_00137	RNaseP_bact_a links to Rfam database...	0.44	0.43	0.45	42	48423	53	5	46	2	56
ASE_00138	RNaseP_bact_a links to Rfam database...	0.53	0.52	0.55	42	40393	35	4	31	0	39
ASE_00140	RNaseP_bact_a links to Rfam database...	0.69	0.65	0.74	81	70767	33	3	25	5	44
ASE_00142	RNaseP_bact_a links to Rfam database...	0.74	0.70	0.79	85	67054	26	4	18	4	37
ASE_00146	RNaseP_bact_a links to Rfam database...	0.51	0.46	0.56	57	70775	47	0	44	3	67
ASE_00153	RNaseP_nuc links to Rfam database...	0.61	0.62	0.61	45	57556	71	2	27	42	28
ASE_00161	RNaseP_bact_b links to Rfam database...	0.27	0.29	0.26	25	53531	72	18	54	0	62
ASE_00163	RNaseP_bact_a links to Rfam database...	0.29	0.29	0.30	27	53211	72	7	56	9	66
ASE_00165	RNaseP_bact_a links to Rfam database...	0.57	0.55	0.60	56	52881	39	7	31	1	45
ASE_00170	RNaseP_bact_a links to Rfam database...	0.70	0.68	0.72	63	48741	25	2	22	1	30
ASE_00171	RNaseP_bact_a links to Rfam database...	0.71	0.70	0.73	66	48425	25	5	20	0	28
ASE_00172	RNaseP_bact_a links to Rfam database...	0.68	0.66	0.70	70	58896	35	4	26	5	36
ASE_00174	RNaseP_bact_a links to Rfam database...	0.55	0.51	0.59	56	60980	39	3	36	0	53
ASE_00175	RNaseP_bact_a links to Rfam database...	0.44	0.44	0.45	47	59926	62	6	52	4	60
ASE_00179	RNaseP_bact_a links to Rfam database...	0.64	0.65	0.62	55	44164	34	7	27	0	29
ASE_00180	RNaseP_bact_a links to Rfam database...	0.72	0.69	0.75	69	51268	29	2	21	6	31
ASE_00181	RNaseP_bact_a links to Rfam database...	0.54	0.53	0.55	56	57528	50	3	43	4	50
ASE_00182	RNaseP_bact_a links to Rfam database...	0.49	0.47	0.51	64	84129	65	6	56	3	72
ASE_00183	RNaseP_bact_a links to Rfam database...	0.72	0.71	0.73	80	61316	33	2	27	4	33
ASE_00184	RNaseP_bact_a links to Rfam database...	0.63	0.64	0.63	65	54511	39	10	29	0	37
ASE_00185	RNaseP_bact_a links to Rfam database...	0.61	0.59	0.65	75	73420	43	5	36	2	53
ASE_00186	RNaseP_bact_a links to Rfam database...	0.74	0.70	0.78	92	78885	31	3	23	5	40
ASE_00190	RNaseP_bact_b links to Rfam database...	0.46	0.44	0.47	40	45366	45	8	37	0	50
ASE_00197	RNaseP_bact_a links to Rfam database...	0.48	0.46	0.51	66	89124	66	4	59	3	79
ASE_00198	RNaseP_bact_a links to Rfam database...	0.54	0.53	0.55	54	52551	45	6	39	0	48
ASE_00203	RNaseP_bact_a links to Rfam database...	0.70	0.68	0.72	65	46575	29	6	19	4	31
ASE_00212	RNaseP_bact_a links to Rfam database...	0.54	0.52	0.55	77	93822	66	5	57	4	71
ASE_00214	RNaseP_bact_a links to Rfam database...	0.78	0.76	0.80	78	56182	28	3	17	8	25
ASE_00215	RNaseP_bact_a links to Rfam database...	0.55	0.53	0.57	52	48425	42	4	35	3	47
ASE_00216	RNaseP_bact_a links to Rfam database...	0.60	0.61	0.60	50	39256	36	8	26	2	32
ASE_00217	RNaseP_bact_a links to Rfam database...	0.30	0.29	0.32	26	40388	60	6	50	4	64
ASE_00221	RNaseP_bact_a links to Rfam database...	0.40	0.38	0.42	45	64514	65	3	58	4	72
ASE_00228	RNaseP_bact_a links to Rfam database...	0.59	0.59	0.58	51	46883	37	14	23	0	35
ASE_00229	RNaseP_bact_a links to Rfam database...	0.58	0.57	0.59	50	42401	39	5	30	4	37
ASE_00231	RNaseP_bact_a links to Rfam database...	0.69	0.69	0.70	66	47801	28	5	23	0	30
ASE_00232	RNaseP_bact_a links to Rfam database...	0.56	0.55	0.57	46	38422	38	3	32	3	38
ASE_00234	RNaseP_bact_a links to Rfam database...	0.52	0.49	0.55	63	75351	56	2	50	4	66
ASE_00238	RNaseP_bact_a links to Rfam database...	0.48	0.47	0.50	54	64152	58	4	51	3	60
ASE_00241	RNaseP_bact_a links to Rfam database...	0.56	0.54	0.58	47	43875	43	0	34	9	40
ASE_00242	RNaseP_bact_a links to Rfam database...	0.72	0.68	0.76	76	60975	27	3	21	3	36
ASE_00248	RNaseP_bact_a links to Rfam database...	0.46	0.42	0.49	48	62384	49	3	46	0	66
ASE_00254	RNaseP_bact_a links to Rfam database...	0.61	0.60	0.63	49	36778	33	5	24	4	33
ASE_00255	RNaseP_bact_a links to Rfam database...	0.47	0.45	0.50	59	74572	60	7	53	0	71
ASE_00257	RNaseP_bact_a links to Rfam database...	0.64	0.64	0.65	62	50944	34	0	34	0	35
ASE_00263	RNaseP_bact_a links to Rfam database...	0.62	0.62	0.62	74	70380	47	5	41	1	46
ASE_00267	RNaseP_bact_a links to Rfam database...	0.46	0.44	0.48	39	45069	51	5	37	9	49
ASE_00270	RNaseP_bact_a links to Rfam database...	0.63	0.62	0.64	79	72267	45	8	36	1	49
ASE_00274	RNaseP_bact_a links to Rfam database...	0.48	0.47	0.50	48	55515	48	8	40	0	55
ASE_00279	RNaseP_bact_a links to Rfam database...	0.38	0.36	0.41	36	53213	58	1	51	6	65
ASE_00280	RNaseP_bact_a links to Rfam database...	0.37	0.37	0.38	36	51908	62	6	53	3	62
ASE_00281	RNaseP_bact_a links to Rfam database...	0.54	0.51	0.58	45	44473	39	0	33	6	43
ASE_00282	RNaseP_bact_a links to Rfam database...	0.42	0.41	0.42	52	77692	72	6	65	1	75
ASE_00283	RNaseP_bact_a links to Rfam database...	0.74	0.73	0.76	78	61673	27	5	20	2	29
ASE_00284	RNaseP_bact_a links to Rfam database...	0.62	0.60	0.64	65	58210	43	4	32	7	43
ASE_00285	RNaseP_bact_a links to Rfam database...	0.62	0.58	0.66	71	68899	43	2	34	7	51
ASE_00286	RNaseP_bact_a links to Rfam database...	0.43	0.42	0.43	39	46574	61	3	49	9	53
ASE_00287	RNaseP_bact_a links to Rfam database...	0.59	0.55	0.63	57	54855	40	0	34	6	46
ASE_00292	RNaseP_bact_a links to Rfam database...	0.71	0.66	0.76	91	81690	34	4	25	5	47
ASE_00294	RNaseP_bact_a links to Rfam database...	0.78	0.74	0.83	127	114328	29	3	23	3	44
ASE_00296	RNaseP_bact_a links to Rfam database...	0.31	0.30	0.33	43	91677	88	8	78	2	102
ASE_00297	RNaseP_bact_a links to Rfam database...	0.53	0.53	0.54	52	52878	50	3	42	5	46
ASE_00298	RNaseP_bact_a links to Rfam database...	0.19	0.19	0.19	21	67420	90	9	78	3	92
ASE_00305	RNaseP_bact_b links to Rfam database...	0.44	0.46	0.42	39	54523	61	15	38	8	46
ASE_00318	RNaseP_bact_b links to Rfam database...	0.64	0.61	0.67	72	80092	40	13	23	4	46
ASE_00321	RNaseP_bact_b links to Rfam database...	0.39	0.40	0.39	35	54525	56	9	46	1	53
ASE_00328	RNaseP_bact_b links to Rfam database...	0.41	0.41	0.41	46	72659	73	3	63	7	66
ASE_00332	RNaseP_bact_a links to Rfam database...	0.54	0.51	0.57	71	81686	59	2	51	6	67
ASE_00335	RNaseP_bact_b links to Rfam database...	0.52	0.52	0.52	60	75350	64	13	43	8	56
ASE_00340	RNaseP_bact_a links to Rfam database...	0.71	0.72	0.71	61	45970	34	7	18	9	24
ASE_00342	RNaseP_bact_a links to Rfam database...	0.48	0.45	0.50	52	62378	51	1	50	0	63
ASE_00353	RNaseP_bact_a links to Rfam database...	0.46	0.47	0.45	50	57860	60	11	49	0	57
ASE_00361	RNaseP_bact_a links to Rfam database...	0.37	0.36	0.38	46	75345	78	9	66	3	81
ASE_00362	RNaseP_bact_a links to Rfam database...	0.62	0.62	0.63	56	48116	36	6	27	3	35
ASE_00363	RNaseP_bact_a links to Rfam database...	0.54	0.55	0.53	52	51262	46	5	41	0	42
ASE_00364	RNaseP_bact_a links to Rfam database...	0.32	0.31	0.33	33	54184	72	7	61	4	72
ASE_00366	RNaseP_bact_a links to Rfam database...	0.52	0.54	0.50	53	58547	55	12	41	2	45
ASE_00367	RNaseP_bact_a links to Rfam database...	0.33	0.35	0.32	30	42976	65	8	57	0	56
ASE_00369	RNaseP_bact_a links to Rfam database...	0.68	0.67	0.69	72	55841	37	2	30	5	35
ASE_00372	RNaseP_bact_a links to Rfam database...	0.72	0.71	0.72	71	51905	30	5	22	3	29
ASE_00374	RNaseP_bact_a links to Rfam database...	0.56	0.56	0.57	49	44764	37	8	29	0	39
ASE_00376	RNaseP_bact_a links to Rfam database...	0.52	0.50	0.54	53	56855	48	4	41	3	52
ASE_00377	RNaseP_bact_a links to Rfam database...	0.69	0.66	0.72	71	57531	34	3	25	6	36
ASE_00382	RNaseP_bact_a links to Rfam database...	0.51	0.51	0.52	43	41822	43	6	34	3	41
ASE_00383	RNaseP_bact_a links to Rfam database...	0.44	0.43	0.45	45	54516	59	4	50	5	60
ASE_00384	RNaseP_bact_a links to Rfam database...	0.73	0.71	0.75	65	48429	27	4	18	5	27
ASE_00386	RNaseP_bact_a links to Rfam database...	0.53	0.53	0.53	51	50306	51	4	42	5	45
ASE_00387	RNaseP_bact_a links to Rfam database...	0.36	0.37	0.35	38	55837	70	6	64	0	66
ASE_00388	RNaseP_bact_a links to Rfam database...	0.68	0.67	0.69	60	45666	32	1	26	5	29
ASE_00390	RNaseP_bact_a links to Rfam database...	0.50	0.48	0.53	41	42117	44	6	31	7	44
ASE_00393	RNaseP_bact_a links to Rfam database...	0.36	0.34	0.38	32	47810	59	3	50	6	61
ASE_00394	RNaseP_bact_a links to Rfam database...	0.72	0.72	0.73	67	46879	28	3	22	3	26
ASE_00395	RNaseP_bact_a links to Rfam database...	0.51	0.49	0.53	41	41539	45	1	35	9	43
ASE_00396	RNaseP_bact_a links to Rfam database...	0.37	0.36	0.38	30	41536	55	5	45	5	53
ASE_00397	RNaseP_bact_a links to Rfam database...	0.52	0.51	0.52	54	54511	50	7	43	0	51
ASE_00398	RNaseP_bact_a links to Rfam database...	0.64	0.62	0.66	64	55848	36	1	32	3	40
ASE_00400	RNaseP_bact_a links to Rfam database...	0.53	0.52	0.54	55	57868	48	5	42	1	51
ASE_00401	RNaseP_bact_a links to Rfam database...	0.55	0.56	0.54	70	76898	60	13	47	0	56
ASE_00402	RNaseP_bact_a links to Rfam database...	0.60	0.59	0.61	50	42404	35	4	28	3	35
ASE_00403	RNaseP_bact_a links to Rfam database...	0.47	0.44	0.50	47	55851	51	3	44	4	60
ASE_00404	RNaseP_bact_a links to Rfam database...	0.56	0.55	0.56	47	42987	42	0	37	5	38
ASE_00406	RNaseP_bact_a links to Rfam database...	0.69	0.66	0.72	62	48742	33	2	22	9	32
ASE_00411	RNaseP_bact_a links to Rfam database...	0.26	0.27	0.26	24	49362	69	12	57	0	65
ASE_00412	RNaseP_bact_a links to Rfam database...	0.38	0.37	0.39	39	58212	60	13	47	0	66
ASE_00413	RNaseP_bact_a links to Rfam database...	0.46	0.49	0.43	40	44457	54	14	40	0	41
ASE_00416	RNaseP_bact_a links to Rfam database...	0.71	0.68	0.75	86	77306	36	1	28	7	41
ASE_00419	RNaseP_bact_a links to Rfam database...	0.76	0.73	0.80	75	54852	23	4	15	4	28
ASE_00422	RNaseP_bact_a links to Rfam database...	0.48	0.47	0.49	44	46881	51	5	41	5	50
ASE_00423	RNaseP_bact_a links to Rfam database...	0.49	0.49	0.50	53	56847	56	9	44	3	56
ASE_00427	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	40672	90	27	56	7	46
ASE_00428	RNaseP_bact_a links to Rfam database...	0.54	0.52	0.57	65	76521	54	5	45	4	60
ASE_00430	RNaseP_bact_a links to Rfam database...	0.63	0.61	0.66	59	46881	36	5	26	5	38
ASE_00437	RNaseP_bact_a links to Rfam database...	0.42	0.41	0.44	55	79275	71	4	67	0	80
ASE_00441	RNaseP_bact_a links to Rfam database...	0.78	0.74	0.83	83	64161	28	1	16	11	29
ASE_00448	RNaseP_bact_a links to Rfam database...	0.22	0.22	0.23	25	64151	91	6	79	6	87
ASE_00451	RNaseP_bact_a links to Rfam database...	0.50	0.47	0.52	59	70763	57	3	51	3	66
CRW_00256	SSU_rRNA_bacteria links to Rfam database...	0.45	0.44	0.46	206	1192291	257	41	202	14	262
CRW_00548	5S_rRNA links to Rfam database...	0.86	0.82	0.91	31	7347	5	0	3	2	7
CRW_00552	5S_rRNA links to Rfam database...	0.33	0.31	0.36	12	7107	23	2	19	2	27
CRW_00555	5S_rRNA links to Rfam database...	0.74	0.68	0.82	27	7593	6	0	6	0	13
CRW_00567	5S_rRNA links to Rfam database...	0.21	0.20	0.23	8	7468	29	3	24	2	32
CRW_00570	5S_rRNA links to Rfam database...	0.75	0.76	0.74	28	6865	14	0	10	4	9
CRW_00573	5S_rRNA links to Rfam database...	0.25	0.25	0.26	10	7102	28	0	28	0	30
CRW_00590	SSU_rRNA_bacteria links to Rfam database...	0.32	0.31	0.33	141	1119330	303	41	244	18	311
CRW_00997	SSU_rRNA_bacteria links to Rfam database...	0.52	0.52	0.52	239	1135819	238	24	196	18	225
CRW_01484	5S_rRNA links to Rfam database...	0.18	0.18	0.18	7	7465	32	4	27	1	32
CRW_01485	5S_rRNA links to Rfam database...	0.18	0.18	0.19	7	7466	30	2	28	0	32
CRW_01487	5S_rRNA links to Rfam database...	0.20	0.20	0.21	8	7465	30	3	27	0	33
CRW_01489	5S_rRNA links to Rfam database...	0.85	0.79	0.91	31	7469	5	0	3	2	8
CRW_01491	5S_rRNA links to Rfam database...	0.73	0.65	0.82	28	8351	9	0	6	3	15
CRW_01492	5S_rRNA links to Rfam database...	0.76	0.74	0.78	31	7586	14	0	9	5	11
CRW_01494	5S_rRNA links to Rfam database...	0.74	0.70	0.78	28	7104	9	0	8	1	12
CRW_01497	5S_rRNA links to Rfam database...	0.88	0.83	0.94	33	7105	5	0	2	3	7
CRW_01498	5S_rRNA links to Rfam database...	0.80	0.74	0.86	32	8091	7	0	5	2	11
CRW_01499	5S_rRNA links to Rfam database...	0.57	0.56	0.59	23	7962	17	3	13	1	18
CRW_01500	5S_rRNA links to Rfam database...	0.89	0.84	0.94	32	7716	5	0	2	3	6
CRW_01501	5S_rRNA links to Rfam database...	0.87	0.84	0.90	38	8473	7	0	4	3	7
CRW_01508	5S_rRNA links to Rfam database...	0.90	0.86	0.95	36	7963	7	0	2	5	6
CRW_01532	5S_rRNA links to Rfam database...	0.77	0.76	0.78	28	7104	13	0	8	5	9
CRW_01533	5S_rRNA links to Rfam database...	0.79	0.78	0.81	29	7104	13	0	7	6	8
CRW_01534	5S_rRNA links to Rfam database...	0.78	0.78	0.78	29	7103	13	0	8	5	8
CRW_01535	5S_rRNA links to Rfam database...	0.94	0.89	1.00	33	7107	4	0	0	4	4
CRW_01536	5S_rRNA links to Rfam database...	0.85	0.84	0.86	31	6985	5	0	5	0	6
CRW_01537	5S_rRNA links to Rfam database...	0.74	0.68	0.81	25	7109	12	0	6	6	12
CRW_01539	5S_rRNA links to Rfam database...	0.80	0.76	0.85	28	7107	11	0	5	6	9
CRW_01540	5S_rRNA links to Rfam database...	0.75	0.73	0.77	27	7105	12	0	8	4	10
CRW_01541	5S_rRNA links to Rfam database...	0.38	0.38	0.38	14	7103	24	6	17	1	23
CRW_01542	5S_rRNA links to Rfam database...	0.97	0.95	1.00	35	7105	4	0	0	4	2
CRW_01544	5S_rRNA links to Rfam database...	0.83	0.81	0.86	30	7105	8	0	5	3	7
CRW_01548	5S_rRNA links to Rfam database...	0.78	0.76	0.80	28	6986	12	0	7	5	9
CRW_01555	5S_rRNA links to Rfam database...	0.80	0.76	0.85	28	9012	11	0	5	6	9
CRW_01556	5S_rRNA links to Rfam database...	0.68	0.68	0.69	25	7104	15	0	11	4	12
CRW_01557	5S_rRNA links to Rfam database...	0.92	0.89	0.94	33	7105	6	0	2	4	4
CRW_01559	5S_rRNA links to Rfam database...	0.76	0.73	0.79	27	7226	13	0	7	6	10
CRW_01562	5S_rRNA links to Rfam database...	0.77	0.73	0.82	27	7107	9	1	5	3	10
CRW_01563	5S_rRNA links to Rfam database...	0.58	0.51	0.66	19	6874	11	2	8	1	18
CRW_01566	5S_rRNA links to Rfam database...	0.55	0.54	0.57	20	7105	17	1	14	2	17
CRW_01568	5S_rRNA links to Rfam database...	0.78	0.78	0.78	29	7103	13	0	8	5	8
CRW_01569	5S_rRNA links to Rfam database...	0.79	0.78	0.81	29	7104	12	0	7	5	8
CRW_01570	5S_rRNA links to Rfam database...	0.83	0.78	0.88	29	7107	10	0	4	6	8
CRW_01572	5S_rRNA links to Rfam database...	0.32	0.30	0.34	11	6989	21	4	17	0	26
CRW_01573	5S_rRNA links to Rfam database...	0.92	0.89	0.94	33	7225	6	0	2	4	4
CRW_01578	5S_rRNA links to Rfam database...	0.94	0.89	1.00	33	7107	4	0	0	4	4
CRW_01580	5S_rRNA links to Rfam database...	0.75	0.68	0.83	25	7110	9	0	5	4	12
CRW_01581	5S_rRNA links to Rfam database...	0.30	0.27	0.34	10	7111	20	0	19	1	27
CRW_01583	5S_rRNA links to Rfam database...	0.80	0.76	0.85	28	7107	9	0	5	4	9
CRW_01584	5S_rRNA links to Rfam database...	0.90	0.89	0.92	33	7104	7	0	3	4	4
CRW_01590	5S_rRNA links to Rfam database...	0.29	0.30	0.29	11	7102	27	6	21	0	26
CRW_01593	5S_rRNA links to Rfam database...	0.79	0.78	0.81	29	7104	12	0	7	5	8
CRW_01595	5S_rRNA links to Rfam database...	0.75	0.73	0.77	27	8480	13	0	8	5	10
CRW_01599	5S_rRNA links to Rfam database...	0.23	0.24	0.23	9	7101	30	5	25	0	28
CRW_01603	5S_rRNA links to Rfam database...	0.87	0.81	0.94	30	7108	5	0	2	3	7
CRW_01605	5S_rRNA links to Rfam database...	0.84	0.78	0.91	29	7108	7	0	3	4	8
CRW_01606	5S_rRNA links to Rfam database...	0.80	0.76	0.85	28	7107	8	0	5	3	9
CRW_01608	5S_rRNA links to Rfam database...	0.50	0.51	0.49	19	8346	20	3	17	0	18
CRW_01616	5S_rRNA links to Rfam database...	0.79	0.78	0.81	29	7104	13	0	7	6	8
CRW_01617	5S_rRNA links to Rfam database...	0.92	0.89	0.94	33	7105	6	0	2	4	4
CRW_01620	5S_rRNA links to Rfam database...	0.86	0.86	0.86	32	6984	8	0	5	3	5
CRW_01621	5S_rRNA links to Rfam database...	0.72	0.70	0.74	26	7105	12	0	9	3	11
CRW_01623	5S_rRNA links to Rfam database...	0.87	0.81	0.94	30	7108	3	0	2	1	7
CRW_01625	5S_rRNA links to Rfam database...	0.85	0.84	0.86	31	7104	8	0	5	3	6
PDB_00012	mir-TAR links to Rfam database...	1.00	1.00	1.00	7	399	3	0	0	3	0
PDB_00070	tRNA links to Rfam database...	0.68	0.67	0.70	16	2827	7	1	6	0	8
PDB_00213	Gammaretro_CES links to Rfam database...	0.87	0.83	0.92	34	5013	3	2	1	0	7
PDB_00229	tRNA links to Rfam database...	0.44	0.43	0.45	10	2753	12	3	9	0	13
PDB_00327	tRNA links to Rfam database...	0.56	0.52	0.60	12	3061	8	0	8	0	11
PDB_00362	tRNA links to Rfam database...	0.98	0.95	1.00	21	2829	0	0	0	0	1
PDB_00402	tRNA links to Rfam database...	0.27	0.30	0.26	7	2748	20	2	18	0	16
PDB_00431	tRNA links to Rfam database...	0.68	0.70	0.67	14	2190	9	0	7	2	6
PDB_00474	tRNA links to Rfam database...	0.96	0.91	1.00	21	2680	2	0	0	2	2
PDB_00553	mir-TAR links to Rfam database...	1.00	1.00	1.00	11	454	0	0	0	0	0
PDB_00571	tRNA links to Rfam database...	0.17	0.16	0.19	4	3300	17	6	11	0	21
PDB_00667	tRNA links to Rfam database...	0.71	0.68	0.75	15	2830	6	4	1	1	7
PDB_00741	Entero_5_CRE links to Rfam database...	0.87	0.76	1.00	13	690	0	0	0	0	4
PDB_00810	s2m links to Rfam database...	0.91	0.82	1.00	14	1067	0	0	0	0	3
PDB_00828	Purine links to Rfam database...	0.88	0.78	1.00	21	2464	0	0	0	0	6
PDB_00829	Purine links to Rfam database...	0.86	0.75	1.00	18	2260	0	0	0	0	6
PDB_00876	HIV_FE links to Rfam database...	0.97	0.95	1.00	19	971	0	0	0	0	1
PDB_01002	tRNA links to Rfam database...	0.95	0.90	1.00	19	2756	2	0	0	2	2
PDB_01020	Purine links to Rfam database...	0.23	0.22	0.26	5	2259	14	2	12	0	18
PDB_01050	UnaL2 links to Rfam database...	0.92	0.85	1.00	11	619	2	0	0	2	2
PDB_01053	tRNA links to Rfam database...	1.00	1.00	1.00	16	1362	0	0	0	0	0
PDB_01073	SAM links to Rfam database...	0.75	0.65	0.88	22	4346	4	0	3	1	12
PDB_01114	TPP links to Rfam database...	0.44	0.37	0.53	10	2831	9	0	9	0	17
PDB_01120	SSU_rRNA_bacteria links to Rfam database...	0.48	0.45	0.51	239	1204657	247	27	205	15	288
PDB_01152	HIV_FS2 links to Rfam database...	0.96	0.93	1.00	13	548	0	0	0	0	1
PDB_01236	ykoK links to Rfam database...	0.70	0.67	0.73	36	11579	16	0	13	3	18
RFA_00389	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00390	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00391	Hammerhead_3 links to Rfam database...	0.93	0.87	1.00	13	1418	2	0	0	2	2
RFA_00396	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	2	0	0	2	1
RFA_00402	Hammerhead_3 links to Rfam database...	0.31	0.33	0.29	5	1414	13	1	11	1	10
RFA_00409	Hammerhead_3 links to Rfam database...	0.55	0.53	0.57	8	1417	7	1	5	1	7
RFA_00416	Hammerhead_3 links to Rfam database...	0.93	0.93	0.93	14	1470	4	0	1	3	1
RFA_00433	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00434	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00436	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00440	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1470	2	0	0	2	0
RFA_00442	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00444	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1525	1	0	0	1	0
RFA_00583	Y_RNA links to Rfam database...	0.48	0.47	0.50	7	4936	21	0	7	14	8
RFA_00584	Y_RNA links to Rfam database...	0.80	0.80	0.80	12	2911	17	0	3	14	3
RFA_00585	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4836	11	0	0	11	0
RFA_00586	Y_RNA links to Rfam database...	0.89	0.80	1.00	12	3904	11	0	0	11	3
RFA_00587	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4836	12	0	0	12	0
RFA_00588	Y_RNA links to Rfam database...	0.93	0.87	1.00	13	4547	12	0	0	12	2
RFA_00589	Y_RNA links to Rfam database...	0.93	0.87	1.00	13	4358	16	0	0	16	2
RFA_00594	Y_RNA links to Rfam database...	0.97	0.93	1.00	14	2761	11	0	0	11	1
RFA_00596	Y_RNA links to Rfam database...	0.00	0.00	0.00	0	5981	23	4	10	9	15
RFA_00599	Telomerase-vert links to Rfam database...	0.63	0.68	0.60	75	101349	70	18	33	19	36
RFA_00601	Telomerase-vert links to Rfam database...	0.48	0.50	0.46	57	99111	86	21	46	19	57
RFA_00658	Hammerhead_1 links to Rfam database...	0.33	0.29	0.40	4	1118	8	0	6	2	10
RFA_00664	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	980	11	0	10	1	14
RFA_00667	Hammerhead_1 links to Rfam database...	0.29	0.29	0.31	4	977	10	1	8	1	10
RFA_00668	Hammerhead_1 links to Rfam database...	0.41	0.43	0.40	6	975	9	0	9	0	8
RFA_00672	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	895	9	0	8	1	13
RFA_00673	Hammerhead_1 links to Rfam database...	0.42	0.36	0.50	5	1118	6	0	5	1	9
RFA_00674	Hammerhead_1 links to Rfam database...	0.74	0.71	0.77	10	1115	4	0	3	1	4
RFA_00675	Hammerhead_1 links to Rfam database...	0.29	0.29	0.31	4	977	9	1	8	0	10
RFA_00677	Hammerhead_1 links to Rfam database...	0.42	0.43	0.43	6	976	9	0	8	1	8
RFA_00678	Hammerhead_1 links to Rfam database...	0.33	0.29	0.40	4	936	6	0	6	0	10
RFA_00680	Hammerhead_1 links to Rfam database...	0.74	0.71	0.77	10	1115	6	0	3	3	4
RFA_00704	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	983	8	0	7	1	14
RFA_00707	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	1025	10	1	9	0	14
RFA_00715	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	936	10	0	10	0	14
RFA_00717	Hammerhead_1 links to Rfam database...	0.66	0.64	0.69	9	890	4	0	4	0	5
RFA_00730	s2m links to Rfam database...	0.69	0.67	0.73	8	892	4	1	2	1	4
RFA_00731	s2m links to Rfam database...	0.69	0.67	0.73	8	892	4	1	2	1	4
RFA_00733	s2m links to Rfam database...	0.69	0.67	0.73	8	892	4	1	2	1	4
RFA_00734	s2m links to Rfam database...	0.18	0.17	0.22	2	894	8	0	7	1	10
RFA_00736	s2m links to Rfam database...	0.69	0.67	0.73	8	892	4	1	2	1	4
RFA_00737	s2m links to Rfam database...	1.00	1.00	1.00	12	891	1	0	0	1	0
RFA_00745	s2m links to Rfam database...	1.00	1.00	1.00	12	934	1	0	0	1	0
RFA_00749	s2m links to Rfam database...	0.69	0.67	0.73	8	892	4	1	2	1	4
RFA_00758	s2m links to Rfam database...	0.96	0.92	1.00	11	892	0	0	0	0	1
RFA_00762	s2m links to Rfam database...	0.64	0.67	0.62	8	890	5	1	4	0	4
RFA_00763	s2m links to Rfam database...	1.00	1.00	1.00	12	891	0	0	0	0	0
RFA_00764	s2m links to Rfam database...	0.69	0.67	0.73	8	892	4	1	2	1	4
RFA_00765	s2m links to Rfam database...	1.00	1.00	1.00	12	891	1	0	0	1	0
RFA_00786	Gammaretro_CES links to Rfam database...	0.71	0.72	0.70	23	5017	10	2	8	0	9
RFA_00791	Gammaretro_CES links to Rfam database...	0.50	0.50	0.50	16	5119	16	5	11	0	16
RFA_00792	Gammaretro_CES links to Rfam database...	0.88	0.91	0.85	29	5016	7	2	3	2	3
RFA_00801	Gammaretro_CES links to Rfam database...	0.81	0.81	0.81	26	5018	7	1	5	1	6
SPR_00007	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00009	tRNA links to Rfam database...	0.97	0.95	1.00	19	2831	0	0	0	0	1
SPR_00010	tRNA links to Rfam database...	0.47	0.48	0.48	10	2829	11	3	8	0	11
SPR_00012	tRNA links to Rfam database...	0.24	0.25	0.24	5	2829	16	2	14	0	15
SPR_00013	tRNA links to Rfam database...	0.97	0.95	1.00	19	2831	0	0	0	0	1
SPR_00016	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00017	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00025	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	1	0	0	1	0
SPR_00026	tRNA links to Rfam database...	0.60	0.57	0.63	12	2907	8	0	7	1	9
SPR_00027	tRNA links to Rfam database...	0.38	0.38	0.38	8	2905	14	0	13	1	13
SPR_00036	tRNA links to Rfam database...	0.84	0.80	0.89	16	2757	3	0	2	1	4
SPR_00045	tRNA links to Rfam database...	0.79	0.77	0.81	17	2829	4	0	4	0	5
SPR_00064	tRNA links to Rfam database...	0.54	0.57	0.52	12	2827	11	2	9	0	9
SPR_00065	tRNA links to Rfam database...	0.50	0.52	0.48	11	2827	12	4	8	0	10
SPR_00066	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00068	tRNA links to Rfam database...	0.55	0.52	0.58	11	2831	8	3	5	0	10
SPR_00070	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00074	tRNA links to Rfam database...	0.52	0.55	0.50	11	2828	12	2	9	1	9
SPR_00079	tRNA links to Rfam database...	1.00	1.00	1.00	19	2466	1	0	0	1	0
SPR_00086	tRNA links to Rfam database...	0.30	0.33	0.28	7	2825	18	5	13	0	14
SPR_00087	tRNA links to Rfam database...	0.42	0.45	0.41	9	2828	13	4	9	0	11
SPR_00088	tRNA links to Rfam database...	0.42	0.45	0.41	9	2828	13	4	9	0	11
SPR_00089	tRNA links to Rfam database...	0.42	0.45	0.41	9	2828	13	4	9	0	11
SPR_00090	tRNA links to Rfam database...	0.18	0.20	0.17	4	2827	19	4	15	0	16
SPR_00091	tRNA links to Rfam database...	0.42	0.45	0.41	9	2828	13	4	9	0	11
SPR_00095	tRNA links to Rfam database...	0.52	0.52	0.52	11	2829	10	2	8	0	10
SPR_00111	tRNA links to Rfam database...	0.54	0.57	0.52	12	2678	11	1	10	0	9
SPR_00112	tRNA links to Rfam database...	0.78	0.76	0.80	16	2681	5	3	1	1	5
SPR_00115	tRNA links to Rfam database...	0.85	0.81	0.89	17	2682	2	0	2	0	4
SPR_00117	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	1	0	0	1	0
SPR_00139	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	1	0	0	1	0
SPR_00153	tRNA links to Rfam database...	0.62	0.62	0.62	13	2905	8	3	5	0	8
SPR_00155	tRNA links to Rfam database...	0.49	0.52	0.46	11	2902	13	3	10	0	10
SPR_00156	tRNA links to Rfam database...	0.48	0.52	0.44	11	2901	14	5	9	0	10
SPR_00176	tRNA links to Rfam database...	0.51	0.55	0.48	11	2827	13	2	10	1	9
SPR_00177	tRNA links to Rfam database...	0.51	0.57	0.46	12	2824	14	2	12	0	9
SPR_00178	tRNA links to Rfam database...	0.70	0.71	0.68	15	2828	7	3	4	0	6
SPR_00191	tRNA links to Rfam database...	0.18	0.19	0.19	4	2829	17	4	13	0	17
SPR_00200	tRNA links to Rfam database...	0.53	0.52	0.55	11	2830	10	3	6	1	10
SPR_00224	tRNA links to Rfam database...	0.47	0.50	0.45	10	3719	17	5	7	5	10
SPR_00271	tRNA links to Rfam database...	0.52	0.57	0.48	12	2825	13	3	10	0	9
SPR_00273	tRNA links to Rfam database...	0.30	0.33	0.28	7	2825	19	2	16	1	14
SPR_00276	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00277	tRNA links to Rfam database...	0.98	0.95	1.00	20	2906	0	0	0	0	1
SPR_00294	tRNA links to Rfam database...	0.55	0.57	0.55	12	2828	10	3	7	0	9
SPR_00295	tRNA links to Rfam database...	0.55	0.57	0.55	12	2753	11	3	7	1	9
SPR_00314	tRNA links to Rfam database...	0.68	0.71	0.65	15	2903	11	0	8	3	6
SPR_00315	tRNA links to Rfam database...	0.74	0.81	0.68	17	2901	10	0	8	2	4
SPR_00317	tRNA links to Rfam database...	0.53	0.60	0.48	12	2901	13	7	6	0	8
SPR_00318	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	4	0	0	4	0
SPR_00321	tRNA links to Rfam database...	0.68	0.67	0.70	14	2983	6	4	2	0	7
SPR_00333	tRNA links to Rfam database...	0.45	0.48	0.43	10	2752	13	5	8	0	11
SPR_00352	tRNA links to Rfam database...	0.74	0.76	0.73	16	2904	6	3	3	0	5
SPR_00353	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00357	tRNA links to Rfam database...	0.98	0.95	1.00	20	2906	0	0	0	0	1
SPR_00358	tRNA links to Rfam database...	0.31	0.35	0.29	7	2902	17	5	12	0	13
SPR_00370	tRNA links to Rfam database...	0.23	0.24	0.23	5	2753	17	3	14	0	16
SPR_00386	tRNA links to Rfam database...	0.50	0.50	0.50	10	4166	16	5	5	6	10
SPR_00414	tRNA links to Rfam database...	0.44	0.48	0.42	10	3546	18	5	9	4	11
SPR_00415	tRNA links to Rfam database...	0.76	0.81	0.71	17	3546	7	5	2	0	4
SPR_00417	tRNA links to Rfam database...	0.29	0.32	0.28	7	3545	22	7	11	4	15
SPR_00418	tRNA links to Rfam database...	0.29	0.32	0.28	7	3545	22	7	11	4	15
SPR_00434	tRNA links to Rfam database...	0.27	0.29	0.27	6	2828	16	7	9	0	15
SPR_00435	tRNA links to Rfam database...	0.65	0.67	0.64	14	2828	8	0	8	0	7
SPR_00436	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	1	0	0	1	1
SPR_00437	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	1	0	0	1	0
SPR_00438	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	0	0	0	0	0
SPR_00452	tRNA links to Rfam database...	0.73	0.76	0.70	16	2827	7	3	4	0	5
SPR_00455	tRNA links to Rfam database...	0.28	0.29	0.29	6	2829	15	5	10	0	15
SPR_00456	tRNA links to Rfam database...	0.29	0.33	0.27	7	2824	19	2	17	0	14
SPR_00476	tRNA links to Rfam database...	0.52	0.57	0.48	12	2750	13	3	10	0	9
SPR_00479	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00482	tRNA links to Rfam database...	0.98	0.95	1.00	20	2681	0	0	0	0	1
SPR_00483	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00487	tRNA links to Rfam database...	-0.01	0.00	0.00	0	2683	18	0	18	0	22
SPR_00493	tRNA links to Rfam database...	0.30	0.32	0.29	7	2751	17	5	12	0	15
SPR_00496	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	0	0	0	0	0
SPR_00497	tRNA links to Rfam database...	0.52	0.57	0.48	12	2750	13	3	10	0	9
SPR_00502	tRNA links to Rfam database...	0.56	0.57	0.55	12	2904	10	2	8	0	9
SPR_00504	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	0	0	0	0	0
SPR_00505	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	2	0	0	2	0
SPR_00506	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00509	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	2	0	0	2	0
SPR_00512	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	2	0	0	2	0
SPR_00513	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00518	tRNA links to Rfam database...	0.56	0.55	0.58	11	2907	8	1	7	0	9
SPR_00548	tRNA links to Rfam database...	0.53	0.57	0.50	12	3379	12	0	12	0	9
SPR_00557	tRNA links to Rfam database...	0.40	0.43	0.39	9	2827	14	1	13	0	12
SPR_00561	tRNA links to Rfam database...	0.40	0.43	0.39	9	2827	14	1	13	0	12
SPR_00590	tRNA links to Rfam database...	0.33	0.35	0.32	7	2981	15	3	12	0	13
SPR_00593	tRNA links to Rfam database...	0.51	0.53	0.50	10	2755	10	4	6	0	9
SPR_00595	tRNA links to Rfam database...	0.55	0.57	0.55	12	2753	10	2	8	0	9
SPR_00598	tRNA links to Rfam database...	0.54	0.57	0.52	12	2980	12	2	9	1	9
SPR_00610	tRNA links to Rfam database...	0.87	0.81	0.94	17	2538	2	0	1	1	4
SPR_00620	tRNA links to Rfam database...	0.52	0.57	0.48	12	2978	14	5	8	1	9
SPR_00721	tRNA links to Rfam database...	0.38	0.43	0.35	9	2900	19	3	14	2	12
SPR_00722	tRNA links to Rfam database...	0.76	0.80	0.73	16	2904	6	4	2	0	4
SPR_00758	tRNA links to Rfam database...	0.29	0.33	0.27	7	2977	20	7	12	1	14
SPR_00760	tRNA links to Rfam database...	0.39	0.43	0.36	9	3545	16	1	15	0	12
SPR_00777	tRNA links to Rfam database...	0.51	0.55	0.48	11	2605	12	5	7	0	9
SPR_00867	tRNA links to Rfam database...	0.49	0.52	0.46	11	2902	15	4	9	2	10
SPR_00868	tRNA links to Rfam database...	0.83	0.81	0.85	17	2906	4	0	3	1	4
SPR_00943	tRNA links to Rfam database...	0.83	0.85	0.81	17	2535	4	1	3	0	3
SPR_00957	tRNA links to Rfam database...	0.78	0.76	0.80	16	2983	5	0	4	1	5
SPR_01040	tRNA links to Rfam database...	0.83	0.81	0.85	17	2755	4	0	3	1	4
SPR_01088	tRNA links to Rfam database...	0.52	0.52	0.52	11	2905	12	2	8	2	10
SPR_01095	tRNA links to Rfam database...	0.39	0.43	0.36	9	2825	16	3	13	0	12
SPR_01106	tRNA links to Rfam database...	0.98	0.95	1.00	20	2536	1	0	0	1	1
SPR_01117	tRNA links to Rfam database...	1.00	1.00	1.00	21	2982	1	0	0	1	0
SPR_01157	tRNA links to Rfam database...	0.73	0.76	0.70	16	2752	8	0	7	1	5
SRP_00006	Metazoa_SRP links to Rfam database...	0.84	0.83	0.86	84	45655	17	3	11	3	17
SRP_00008	Bacteria_small_SRP links to Rfam database...	1.00	1.00	1.00	25	2901	0	0	0	0	0
SRP_00011	Plant_SRP links to Rfam database...	0.52	0.50	0.54	52	46264	46	2	42	2	52
SRP_00015	Plant_SRP links to Rfam database...	0.70	0.68	0.72	67	46267	31	2	24	5	32
SRP_00020	Bacteria_small_SRP links to Rfam database...	0.89	0.91	0.88	30	5531	4	1	3	0	3
SRP_00024	Bacteria_large_SRP links to Rfam database...	0.76	0.77	0.74	67	37585	23	7	16	0	20
SRP_00026	Bacteria_large_SRP links to Rfam database...	0.62	0.61	0.63	54	36770	38	2	30	6	34
SRP_00027	Bacteria_large_SRP links to Rfam database...	0.64	0.62	0.67	54	37047	28	3	24	1	33
SRP_00030	Bacteria_large_SRP links to Rfam database...	0.76	0.77	0.76	68	36766	24	4	18	2	20
SRP_00031	Bacteria_large_SRP links to Rfam database...	0.66	0.66	0.66	59	36226	35	2	28	5	30
SRP_00037	Bacteria_large_SRP links to Rfam database...	0.13	0.13	0.13	11	36499	75	6	69	0	76
SRP_00038	Bacteria_small_SRP links to Rfam database...	0.94	0.94	0.94	31	5017	2	0	2	0	2
SRP_00042	Bacteria_small_SRP links to Rfam database...	0.41	0.44	0.39	11	3977	19	0	17	2	14
SRP_00044	Bacteria_small_SRP links to Rfam database...	0.74	0.72	0.77	23	6075	10	1	6	3	9
SRP_00050	Metazoa_SRP links to Rfam database...	0.97	0.94	1.00	93	44757	2	0	0	2	6
SRP_00051	Bacteria_small_SRP links to Rfam database...	0.97	0.97	0.97	29	5430	3	0	1	2	1
SRP_00054	Bacteria_small_SRP links to Rfam database...	0.45	0.44	0.47	14	5535	16	0	16	0	18
SRP_00057	Bacteria_small_SRP links to Rfam database...	0.83	0.83	0.83	29	6293	7	1	5	1	6
SRP_00058	Bacteria_small_SRP links to Rfam database...	0.87	0.88	0.86	30	5743	9	1	4	4	4
SRP_00066	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	45357	94	11	83	0	100
SRP_00072	Bacteria_small_SRP links to Rfam database...	1.00	1.00	1.00	29	6299	1	0	0	1	0
SRP_00074	Bacteria_small_SRP links to Rfam database...	0.39	0.41	0.36	12	6522	25	3	18	4	17
SRP_00075	Bacteria_small_SRP links to Rfam database...	0.88	0.88	0.88	30	5531	7	0	4	3	4
SRP_00077	Bacteria_small_SRP links to Rfam database...	0.21	0.22	0.21	8	6631	31	4	27	0	29
SRP_00084	Bacteria_small_SRP links to Rfam database...	0.88	0.88	0.88	30	5426	4	1	3	0	4
SRP_00086	Metazoa_SRP links to Rfam database...	0.72	0.73	0.71	73	44150	31	3	27	1	27
SRP_00088	Bacteria_large_SRP links to Rfam database...	0.68	0.69	0.68	61	34101	29	5	24	0	28
SRP_00089	Bacteria_large_SRP links to Rfam database...	0.84	0.82	0.86	74	35692	12	1	11	0	16
SRP_00090	Bacteria_large_SRP links to Rfam database...	0.65	0.63	0.68	57	35427	29	2	25	2	33
SRP_00094	Bacteria_small_SRP links to Rfam database...	0.86	0.88	0.84	21	4070	4	0	4	0	3
SRP_00095	Bacteria_small_SRP links to Rfam database...	0.85	0.88	0.81	22	3978	5	1	4	0	3
SRP_00098	Bacteria_small_SRP links to Rfam database...	0.68	0.70	0.67	26	6402	16	1	12	3	11
SRP_00102	Metazoa_SRP links to Rfam database...	0.68	0.68	0.68	69	44450	32	6	26	0	32
SRP_00103	Metazoa_SRP links to Rfam database...	0.84	0.82	0.86	84	45353	14	0	14	0	18
SRP_00105	Bacteria_small_SRP links to Rfam database...	0.38	0.38	0.39	13	5532	20	3	17	0	21
SRP_00107	Bacteria_small_SRP links to Rfam database...	0.13	0.16	0.11	3	3628	26	6	18	2	16
SRP_00121	Bacteria_small_SRP links to Rfam database...	0.80	0.80	0.80	20	4253	6	0	5	1	5
SRP_00128	Bacteria_small_SRP links to Rfam database...	0.74	0.78	0.70	28	6746	12	1	11	0	8
SRP_00134	Bacteria_large_SRP links to Rfam database...	0.51	0.55	0.48	16	5962	23	3	14	6	13
SRP_00141	Bacteria_small_SRP links to Rfam database...	0.89	0.88	0.90	36	6288	4	1	3	0	5
SRP_00152	Plant_SRP links to Rfam database...	0.65	0.65	0.66	67	45651	36	3	32	1	36
SRP_00161	Bacteria_small_SRP links to Rfam database...	0.86	0.86	0.86	19	2828	3	0	3	0	3
SRP_00163	Bacteria_small_SRP links to Rfam database...	0.76	0.81	0.72	21	3457	8	2	6	0	5
SRP_00164	Bacteria_small_SRP links to Rfam database...	0.82	0.83	0.81	29	6867	7	1	6	0	6
SRP_00170	Bacteria_small_SRP links to Rfam database...	0.55	0.56	0.54	14	4069	13	0	12	1	11
SRP_00171	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	45352	99	16	83	0	88
SRP_00173	Bacteria_large_SRP links to Rfam database...	0.73	0.72	0.75	65	38139	28	1	21	6	25
SRP_00174	Bacteria_large_SRP links to Rfam database...	0.69	0.71	0.66	61	38689	34	8	23	3	25
SRP_00178	Plant_SRP links to Rfam database...	0.82	0.80	0.84	82	45655	18	4	12	2	20
SRP_00179	Plant_SRP links to Rfam database...	0.88	0.85	0.91	89	45958	13	1	8	4	16
SRP_00181	Plant_SRP links to Rfam database...	0.32	0.31	0.34	32	45961	63	5	58	0	70
SRP_00182	Plant_SRP links to Rfam database...	0.74	0.72	0.77	73	45961	23	5	17	1	28
SRP_00184	Plant_SRP links to Rfam database...	0.71	0.68	0.75	68	45965	27	6	17	4	32
SRP_00188	Plant_SRP links to Rfam database...	0.21	0.22	0.20	17	31042	66	10	56	0	62
SRP_00194	Bacteria_small_SRP links to Rfam database...	0.77	0.81	0.74	17	3217	6	0	6	0	4
SRP_00200	Bacteria_small_SRP links to Rfam database...	0.71	0.72	0.70	26	6866	13	1	10	2	10
SRP_00209	Bacteria_small_SRP links to Rfam database...	0.68	0.70	0.66	19	4627	10	1	9	0	8
SRP_00213	Bacteria_small_SRP links to Rfam database...	0.37	0.40	0.36	10	4158	18	3	15	0	15
SRP_00215	Bacteria_small_SRP links to Rfam database...	0.82	0.80	0.83	20	3216	4	0	4	0	5
SRP_00228	Metazoa_SRP links to Rfam database...	0.87	0.88	0.87	84	45354	18	5	8	5	11
SRP_00231	Bacteria_small_SRP links to Rfam database...	0.90	0.91	0.89	31	5425	4	1	3	0	3
SRP_00233	Bacteria_small_SRP links to Rfam database...	0.97	0.94	1.00	31	5120	0	0	0	0	2
SRP_00234	Bacteria_large_SRP links to Rfam database...	0.73	0.72	0.74	62	36231	29	1	21	7	24
SRP_00243	Bacteria_small_SRP links to Rfam database...	0.97	0.94	1.00	29	5122	1	0	0	1	2
SRP_00244	Bacteria_small_SRP links to Rfam database...	0.89	0.87	0.92	34	6866	4	1	2	1	5
SRP_00250	Bacteria_small_SRP links to Rfam database...	0.72	0.72	0.72	26	6750	12	1	9	2	10
SRP_00251	Bacteria_small_SRP links to Rfam database...	0.68	0.69	0.68	25	6984	12	1	11	0	11
SRP_00266	Bacteria_small_SRP links to Rfam database...	0.72	0.72	0.72	21	4627	9	1	7	1	8
SRP_00268	Bacteria_small_SRP links to Rfam database...	0.93	0.93	0.93	25	4159	2	1	1	0	2
SRP_00269	Bacteria_small_SRP links to Rfam database...	0.53	0.55	0.53	18	5016	16	3	13	0	15
SRP_00270	Bacteria_small_SRP links to Rfam database...	0.43	0.45	0.41	14	4622	20	2	18	0	17
SRP_00271	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	3215	25	3	22	0	24
SRP_00273	Bacteria_small_SRP links to Rfam database...	0.79	0.80	0.78	32	6745	10	1	8	1	8
SRP_00274	Bacteria_small_SRP links to Rfam database...	0.83	0.84	0.82	32	6864	7	1	6	0	6
SRP_00295	Bacteria_small_SRP links to Rfam database...	0.91	0.89	0.92	34	6866	4	1	2	1	4
SRP_00303	Bacteria_small_SRP links to Rfam database...	0.69	0.72	0.66	23	6635	12	1	11	0	9
SRP_00308	Bacteria_large_SRP links to Rfam database...	0.07	0.07	0.07	6	36227	82	11	71	0	82
SRP_00310	Bacteria_small_SRP links to Rfam database...	0.87	0.87	0.87	20	2903	4	0	3	1	3
SRP_00312	Bacteria_small_SRP links to Rfam database...	0.32	0.33	0.31	9	4157	20	3	17	0	18
SRP_00315	Bacteria_small_SRP links to Rfam database...	0.87	0.87	0.87	20	2903	3	0	3	0	3
SRP_00317	Metazoa_SRP links to Rfam database...	0.87	0.84	0.90	82	45059	12	1	8	3	16
SRP_00318	Bacteria_small_SRP links to Rfam database...	0.87	0.87	0.87	20	2980	3	0	3	0	3
SRP_00325	Bacteria_small_SRP links to Rfam database...	1.00	1.00	1.00	33	4338	0	0	0	0	0
SRP_00326	Bacteria_small_SRP links to Rfam database...	0.55	0.55	0.57	17	5020	13	3	10	0	14
SRP_00333	Bacteria_small_SRP links to Rfam database...	0.86	0.85	0.88	29	5118	4	0	4	0	5
SRP_00335	Bacteria_large_SRP links to Rfam database...	0.30	0.41	0.22	16	35172	77	26	31	20	23
SRP_00337	Bacteria_large_SRP links to Rfam database...	0.67	0.66	0.67	60	35422	31	1	28	2	31
SRP_00338	Bacteria_small_SRP links to Rfam database...	0.94	0.94	0.94	34	5424	2	0	2	0	2
SRP_00341	Bacteria_small_SRP links to Rfam database...	0.77	0.77	0.77	24	4722	7	0	7	0	7
SRP_00342	Bacteria_small_SRP links to Rfam database...	0.59	0.60	0.58	15	3979	16	1	10	5	10
SRP_00347	Metazoa_SRP links to Rfam database...	0.75	0.76	0.74	73	46566	29	9	17	3	23
SRP_00350	Bacteria_small_SRP links to Rfam database...	0.34	0.33	0.35	9	3890	17	2	15	0	18
SRP_00357	Bacteria_small_SRP links to Rfam database...	0.90	0.89	0.91	32	5321	3	1	2	0	4
SRP_00358	Bacteria_small_SRP links to Rfam database...	0.90	0.89	0.91	31	6294	3	1	2	0	4
SRP_00367	Bacteria_small_SRP links to Rfam database...	0.93	0.94	0.92	33	6750	3	1	2	0	2
SRP_00368	Metazoa_SRP links to Rfam database...	0.96	0.95	0.98	93	43861	7	0	2	5	5
SRP_00369	Bacteria_small_SRP links to Rfam database...	0.81	0.80	0.82	28	5744	8	1	5	2	7
SRP_00383	Bacteria_small_SRP links to Rfam database...	0.24	0.25	0.24	6	3215	19	4	15	0	18
TMR_00017	tmRNA links to Rfam database...	0.36	0.37	0.36	38	67055	74	15	53	6	64
TMR_00018	tmRNA links to Rfam database...	0.30	0.32	0.30	29	64522	75	10	59	6	63
TMR_00038	tmRNA links to Rfam database...	0.24	0.25	0.24	27	71141	89	12	73	4	83
TMR_00042	tmRNA links to Rfam database...	0.24	0.24	0.24	24	62735	79	9	67	3	74
TMR_00046	tmRNA links to Rfam database...	0.54	0.55	0.54	53	62736	49	11	35	3	43
TMR_00048	tmRNA links to Rfam database...	0.32	0.34	0.30	32	64875	78	9	64	5	63
TMR_00080	tmRNA links to Rfam database...	0.59	0.61	0.56	59	70395	49	16	30	3	37
TMR_00082	tmRNA links to Rfam database...	0.63	0.64	0.63	61	67799	41	12	24	5	35
TMR_00123	tmRNA links to Rfam database...	0.46	0.47	0.46	47	66327	57	11	45	1	54
TMR_00137	tmRNA links to Rfam database...	0.27	0.28	0.26	25	60980	78	14	56	8	64
TMR_00142	tmRNA links to Rfam database...	0.45	0.47	0.44	48	70767	70	15	46	9	54
TMR_00207	tmRNA links to Rfam database...	0.36	0.35	0.36	36	72291	70	4	59	7	67
TMR_00257	tmRNA links to Rfam database...	0.25	0.24	0.26	24	67068	73	8	61	4	74
TMR_00271	tmRNA links to Rfam database...	0.49	0.48	0.49	44	64171	54	8	38	8	47
TMR_00332	tmRNA links to Rfam database...	0.39	0.38	0.40	38	67065	62	9	49	4	61
TMR_00366	tmRNA links to Rfam database...	0.28	0.28	0.29	28	67798	83	12	58	13	72
TMR_00378	tmRNA links to Rfam database...	0.29	0.30	0.28	29	67791	87	7	69	11	68
TMR_00399	tmRNA links to Rfam database...	0.16	0.17	0.15	16	64871	97	27	66	4	78
TMR_00404	tmRNA links to Rfam database...	0.28	0.30	0.26	28	67421	90	22	57	11	64
TMR_00427	tmRNA links to Rfam database...	0.31	0.31	0.31	30	67432	71	11	55	5	67
TMR_00443	tmRNA links to Rfam database...	0.45	0.45	0.46	47	67058	58	14	42	2	57
TMR_00451	tmRNA links to Rfam database...	0.17	0.19	0.16	17	63441	88	16	72	0	72
TMR_00458	tmRNA links to Rfam database...	0.20	0.20	0.20	19	63449	85	19	59	7	74
TMR_00469	tmRNA links to Rfam database...	0.40	0.41	0.38	41	64513	66	11	55	0	59
TMR_00472	tmRNA links to Rfam database...	0.36	0.38	0.35	37	64514	72	24	45	3	60
TMR_00519	tmRNA links to Rfam database...	0.14	0.15	0.13	14	63086	100	16	74	10	81
TMR_00520	tmRNA links to Rfam database...	0.36	0.37	0.35	37	63085	78	13	55	10	62
TMR_00522	tmRNA links to Rfam database...	0.36	0.36	0.36	35	63092	72	11	52	9	62
TMR_00528	tmRNA links to Rfam database...	0.13	0.13	0.12	13	63082	105	12	83	10	84
TMR_00540	tmRNA links to Rfam database...	0.45	0.45	0.46	47	73433	65	4	52	9	57
TMR_00568	tmRNA links to Rfam database...	0.59	0.59	0.60	58	60630	47	3	35	9	41
TMR_00571	tmRNA links to Rfam database...	0.59	0.60	0.58	59	60625	47	7	35	5	40
TMR_00580	tmRNA links to Rfam database...	0.32	0.31	0.32	31	60630	70	13	52	5	69
TMR_00584	tmRNA links to Rfam database...	0.40	0.42	0.38	41	60967	72	8	59	5	56
TMR_00586	tmRNA links to Rfam database...	0.23	0.25	0.22	24	60964	88	18	69	1	73
TMR_00616	tmRNA links to Rfam database...	0.37	0.37	0.36	37	67058	71	18	48	5	62
TMR_00699	tmRNA links to Rfam database...	0.41	0.41	0.41	42	67059	63	10	50	3	60
TMR_00702	tmRNA links to Rfam database...	0.28	0.29	0.28	29	67057	80	18	57	5	71
TMR_00703	tmRNA links to Rfam database...	0.31	0.31	0.31	31	67427	74	16	54	4	68

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Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.

Table of contents:

Overview

Performance plots

Performance of PPfold(20) - scored higher in this pairwise comparison

1. Total counts & total scores for PPfold(20)

2. Individual counts for PPfold(20) [ download as .csv ]

Performance of PknotsRG - scored lower in this pairwise comparison

1. Total counts & total scores for PknotsRG

2. Individual counts for PknotsRG [ download as .csv ]