CompaRNA - on-line benchmarks of RNA structure prediction methods

Laboratory of Structural Bioinformatics @ Adam Mickiewicz University in Poznan

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Overview

Metric	PPfold(20)		Sfold
MCC	0.758	>	0.603
Average MCC ± 95% Confidence Intervals	0.772 ± 0.018	>	0.642 ± 0.019
Sensitivity	0.654	>	0.542
Positive Predictive Value	0.879	>	0.671
Total TP	23091	>	19142
Total TN	22939410	>	22937142
Total FP	4651	<	10814
Total FP CONTRA	666	<	1290
Total FP INCONS	2506	<	8099
Total FP COMP	1479	>	1425
Total FN	12195	<	16144
P-value	3.56938820447e-08

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Performance plots

Comparison of performance of PPfold(20) and Sfold. Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data (individual counts for PPfold(20) and Sfold).
Average Matthews Correlation Coefficients (MCC) with 95% confidence intervals (CIs) were plotted for different RNA families, for which at least 3 members were present in the benchmarking dataset. 'n' denotes the number of MCCs used to calculate the average and CI. See tables below for raw data (individual counts for PPfold(20) and Sfold).
Comparison of average Matthews Correlation Coefficients (MCCs) for PPfold(20) and Sfold. The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data (individual counts for PPfold(20) and Sfold).

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Performance of PPfold(20) - scored higher in this pairwise comparison

1. Total counts & total scores for PPfold(20)

Total Base Pair Counts
Total TP	23091
Total TN	22939410
Total FP	4651
Total FP CONTRA	666
Total FP INCONS	2506
Total FP COMP	1479
Total FN	12195

Total Scores
MCC	0.758
Average MCC ± 95% Confidence Intervals	0.772 ± 0.018
Sensitivity	0.654
Positive Predictive Value	0.879
Nr of predictions	558

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2. Individual counts for PPfold(20) [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00004	RNaseP_bact_a links to Rfam database...	0.67	0.57	0.80	55	47826	17	1	13	3	42
ASE_00005	RNaseP_bact_a links to Rfam database...	0.75	0.64	0.88	75	57885	13	3	7	3	42
ASE_00006	RNaseP_bact_a links to Rfam database...	0.69	0.60	0.80	56	47516	16	1	13	2	37
ASE_00007	RNaseP_bact_a links to Rfam database...	0.85	0.81	0.89	89	59585	15	2	9	4	21
ASE_00012	RNaseP_bact_a links to Rfam database...	0.74	0.67	0.82	83	73819	24	4	14	6	40
ASE_00018	RNaseP_bact_a links to Rfam database...	0.77	0.66	0.90	89	80502	14	3	7	4	45
ASE_00020	RNaseP_bact_a links to Rfam database...	0.66	0.52	0.84	66	73841	19	6	7	6	60
ASE_00021	RNaseP_bact_a links to Rfam database...	0.55	0.44	0.69	70	104095	36	5	26	5	90
ASE_00022	RNaseP_bact_b links to Rfam database...	0.78	0.69	0.87	86	82929	22	1	12	9	38
ASE_00028	RNaseP_bact_b links to Rfam database...	0.75	0.64	0.87	81	84573	20	1	11	8	45
ASE_00035	RNaseP_bact_a links to Rfam database...	0.80	0.73	0.88	86	70402	19	1	11	7	32
ASE_00037	RNaseP_bact_a links to Rfam database...	0.86	0.81	0.92	89	59243	13	1	7	5	21
ASE_00040	RNaseP_bact_a links to Rfam database...	0.81	0.71	0.92	95	78900	10	3	5	2	38
ASE_00041	RNaseP_bact_a links to Rfam database...	0.83	0.81	0.85	88	57527	18	2	13	3	20
ASE_00042	RNaseP_bact_a links to Rfam database...	0.67	0.57	0.80	82	89998	23	2	18	3	63
ASE_00044	RNaseP_bact_a links to Rfam database...	0.89	0.86	0.92	90	54517	10	2	6	2	15
ASE_00045	RNaseP_bact_b links to Rfam database...	0.82	0.78	0.86	62	47206	17	1	9	7	18
ASE_00064	RNaseP_bact_a links to Rfam database...	0.80	0.73	0.87	65	45376	15	1	9	5	24
ASE_00068	RNaseP_bact_a links to Rfam database...	0.64	0.54	0.75	46	37614	17	5	10	2	39
ASE_00074	RNaseP_bact_a links to Rfam database...	0.85	0.78	0.93	93	67796	12	1	6	5	26
ASE_00075	RNaseP_bact_a links to Rfam database...	0.57	0.44	0.72	72	108711	35	5	23	7	90
ASE_00077	RNaseP_bact_a links to Rfam database...	0.85	0.83	0.88	71	45069	14	5	5	4	15
ASE_00078	RNaseP_bact_a links to Rfam database...	0.91	0.87	0.95	72	42995	11	1	3	7	11
ASE_00080	RNaseP_bact_a links to Rfam database...	0.44	0.35	0.57	43	71555	36	2	31	3	80
ASE_00081	RNaseP_bact_a links to Rfam database...	0.82	0.73	0.92	71	49693	9	2	4	3	26
ASE_00082	RNaseP_bact_a links to Rfam database...	0.65	0.52	0.81	60	70426	22	1	13	8	56
ASE_00083	RNaseP_bact_a links to Rfam database...	0.74	0.62	0.89	68	62405	13	3	5	5	42
ASE_00084	RNaseP_bact_a links to Rfam database...	0.74	0.65	0.84	64	53552	16	2	10	4	35
ASE_00090	RNaseP_bact_a links to Rfam database...	0.78	0.67	0.91	68	55536	11	2	5	4	33
ASE_00092	RNaseP_bact_a links to Rfam database...	0.65	0.53	0.79	60	63470	21	3	13	5	53
ASE_00099	RNaseP_bact_a links to Rfam database...	0.85	0.78	0.93	93	64520	11	2	5	4	27
ASE_00104	RNaseP_bact_a links to Rfam database...	0.83	0.76	0.91	91	64161	15	1	8	6	28
ASE_00105	RNaseP_bact_a links to Rfam database...	0.59	0.50	0.70	56	64181	29	6	18	5	55
ASE_00107	RNaseP_bact_a links to Rfam database...	0.83	0.75	0.92	95	73050	11	2	6	3	32
ASE_00114	RNaseP_bact_b links to Rfam database...	0.69	0.65	0.74	50	45383	26	1	17	8	27
ASE_00115	RNaseP_bact_a links to Rfam database...	0.78	0.68	0.88	69	54537	12	2	7	3	32
ASE_00118	RNaseP_bact_a links to Rfam database...	0.70	0.60	0.82	61	60652	17	2	11	4	41
ASE_00119	RNaseP_bact_a links to Rfam database...	0.70	0.54	0.92	58	62772	8	2	3	3	50
ASE_00123	RNaseP_bact_a links to Rfam database...	0.69	0.59	0.82	50	38442	14	3	8	3	35
ASE_00125	RNaseP_bact_a links to Rfam database...	0.72	0.60	0.87	53	39279	14	2	6	6	35
ASE_00126	RNaseP_bact_a links to Rfam database...	0.85	0.79	0.90	65	40398	13	2	5	6	17
ASE_00128	RNaseP_bact_a links to Rfam database...	0.80	0.70	0.92	70	53225	10	2	4	4	30
ASE_00129	RNaseP_bact_a links to Rfam database...	0.77	0.65	0.92	72	62757	9	3	3	3	39
ASE_00131	RNaseP_bact_a links to Rfam database...	0.75	0.62	0.90	53	39281	12	2	4	6	32
ASE_00134	RNaseP_bact_a links to Rfam database...	0.75	0.68	0.83	65	50325	16	1	12	3	30
ASE_00135	RNaseP_bact_a links to Rfam database...	0.63	0.54	0.74	59	63110	24	3	18	3	50
ASE_00136	RNaseP_bact_a links to Rfam database...	0.79	0.72	0.88	66	48130	12	2	7	3	26
ASE_00137	RNaseP_bact_a links to Rfam database...	0.80	0.66	0.97	65	48449	7	1	1	5	33
ASE_00138	RNaseP_bact_a links to Rfam database...	0.84	0.78	0.91	63	40401	10	2	4	4	18
ASE_00140	RNaseP_bact_a links to Rfam database...	0.69	0.55	0.86	69	70796	17	7	4	6	56
ASE_00142	RNaseP_bact_a links to Rfam database...	0.83	0.74	0.93	90	67064	13	2	5	6	32
ASE_00146	RNaseP_bact_a links to Rfam database...	0.81	0.71	0.92	88	70780	13	1	7	5	36
ASE_00153	RNaseP_nuc links to Rfam database...	0.43	0.37	0.50	27	57576	32	4	23	5	46
ASE_00161	RNaseP_bact_b links to Rfam database...	0.77	0.75	0.79	65	53546	24	1	16	7	22
ASE_00163	RNaseP_bact_a links to Rfam database...	0.83	0.76	0.90	71	53222	12	1	7	4	22
ASE_00165	RNaseP_bact_a links to Rfam database...	0.79	0.66	0.94	67	52904	10	2	2	6	34
ASE_00170	RNaseP_bact_a links to Rfam database...	0.73	0.66	0.80	61	48752	20	2	13	5	32
ASE_00171	RNaseP_bact_a links to Rfam database...	0.82	0.74	0.91	70	48439	11	3	4	4	24
ASE_00172	RNaseP_bact_a links to Rfam database...	0.77	0.65	0.91	69	58920	10	3	4	3	37
ASE_00174	RNaseP_bact_a links to Rfam database...	0.66	0.54	0.80	59	61001	18	3	12	3	50
ASE_00175	RNaseP_bact_a links to Rfam database...	0.73	0.64	0.85	68	59951	17	3	9	5	39
ASE_00179	RNaseP_bact_a links to Rfam database...	0.83	0.80	0.87	67	44176	15	5	5	5	17
ASE_00180	RNaseP_bact_a links to Rfam database...	0.78	0.69	0.88	69	51282	12	3	6	3	31
ASE_00181	RNaseP_bact_a links to Rfam database...	0.70	0.59	0.83	63	57554	18	4	9	5	43
ASE_00182	RNaseP_bact_a links to Rfam database...	0.69	0.53	0.90	72	84175	11	3	5	3	64
ASE_00183	RNaseP_bact_a links to Rfam database...	0.76	0.65	0.90	73	61344	12	2	6	4	40
ASE_00184	RNaseP_bact_a links to Rfam database...	0.77	0.68	0.87	69	54536	13	2	8	3	33
ASE_00185	RNaseP_bact_a links to Rfam database...	0.68	0.52	0.90	66	73463	12	3	4	5	62
ASE_00186	RNaseP_bact_a links to Rfam database...	0.69	0.60	0.80	79	78904	24	3	17	4	53
ASE_00190	RNaseP_bact_b links to Rfam database...	0.75	0.64	0.87	58	45384	12	1	8	3	32
ASE_00197	RNaseP_bact_a links to Rfam database...	0.67	0.55	0.81	80	89154	24	2	17	5	65
ASE_00198	RNaseP_bact_a links to Rfam database...	0.80	0.70	0.92	71	52573	9	1	5	3	31
ASE_00203	RNaseP_bact_a links to Rfam database...	0.80	0.72	0.90	69	46588	13	3	5	5	27
ASE_00212	RNaseP_bact_a links to Rfam database...	0.66	0.53	0.83	78	93867	20	2	14	4	70
ASE_00214	RNaseP_bact_a links to Rfam database...	0.77	0.66	0.91	68	56205	11	3	4	4	35
ASE_00215	RNaseP_bact_a links to Rfam database...	0.62	0.46	0.82	46	48460	13	2	8	3	53
ASE_00216	RNaseP_bact_a links to Rfam database...	0.91	0.84	0.99	69	39270	5	1	0	4	13
ASE_00217	RNaseP_bact_a links to Rfam database...	0.83	0.77	0.91	69	40394	11	2	5	4	21
ASE_00221	RNaseP_bact_a links to Rfam database...	0.85	0.78	0.93	91	64522	10	1	6	3	26
ASE_00228	RNaseP_bact_a links to Rfam database...	0.75	0.69	0.83	59	46900	16	2	10	4	27
ASE_00229	RNaseP_bact_a links to Rfam database...	0.88	0.79	0.97	69	42415	5	2	0	3	18
ASE_00231	RNaseP_bact_a links to Rfam database...	0.67	0.57	0.77	55	47824	22	1	15	6	41
ASE_00232	RNaseP_bact_a links to Rfam database...	0.89	0.82	0.97	69	38432	6	1	1	4	15
ASE_00234	RNaseP_bact_a links to Rfam database...	0.66	0.53	0.83	68	75384	20	6	8	6	61
ASE_00238	RNaseP_bact_a links to Rfam database...	0.67	0.56	0.80	64	64181	22	5	11	6	50
ASE_00241	RNaseP_bact_a links to Rfam database...	0.83	0.78	0.87	68	43878	14	1	9	4	19
ASE_00242	RNaseP_bact_a links to Rfam database...	0.86	0.82	0.90	92	60973	15	1	9	5	20
ASE_00248	RNaseP_bact_a links to Rfam database...	0.86	0.81	0.91	92	62380	13	1	8	4	22
ASE_00254	RNaseP_bact_a links to Rfam database...	0.85	0.77	0.94	63	36789	8	2	2	4	19
ASE_00255	RNaseP_bact_a links to Rfam database...	0.62	0.55	0.71	72	74589	32	4	26	2	58
ASE_00257	RNaseP_bact_a links to Rfam database...	0.73	0.65	0.82	63	50963	17	4	10	3	34
ASE_00263	RNaseP_bact_a links to Rfam database...	0.70	0.57	0.87	68	70422	14	3	7	4	52
ASE_00267	RNaseP_bact_a links to Rfam database...	0.84	0.77	0.91	68	45075	13	2	5	6	20
ASE_00270	RNaseP_bact_a links to Rfam database...	0.58	0.43	0.79	55	72320	19	2	13	4	73
ASE_00274	RNaseP_bact_a links to Rfam database...	0.68	0.60	0.78	62	55531	21	5	13	3	41
ASE_00279	RNaseP_bact_a links to Rfam database...	0.79	0.69	0.90	70	53223	11	3	5	3	31
ASE_00280	RNaseP_bact_a links to Rfam database...	0.74	0.66	0.82	65	51924	17	3	11	3	33
ASE_00281	RNaseP_bact_a links to Rfam database...	0.81	0.75	0.87	66	44475	12	3	7	2	22
ASE_00282	RNaseP_bact_a links to Rfam database...	0.70	0.54	0.90	69	77738	12	2	6	4	58
ASE_00283	RNaseP_bact_a links to Rfam database...	0.73	0.63	0.86	67	61698	14	2	9	3	40
ASE_00284	RNaseP_bact_a links to Rfam database...	0.77	0.66	0.91	71	58233	11	4	3	4	37
ASE_00285	RNaseP_bact_a links to Rfam database...	0.70	0.55	0.91	67	68932	11	2	5	4	55
ASE_00286	RNaseP_bact_a links to Rfam database...	0.81	0.73	0.89	67	46590	12	2	6	4	25
ASE_00287	RNaseP_bact_a links to Rfam database...	0.69	0.60	0.79	62	54868	20	1	15	4	41
ASE_00292	RNaseP_bact_a links to Rfam database...	0.72	0.62	0.83	86	81707	20	2	15	3	52
ASE_00294	RNaseP_bact_a links to Rfam database...	0.72	0.57	0.92	97	114375	13	2	7	4	74
ASE_00296	RNaseP_bact_a links to Rfam database...	0.72	0.61	0.86	88	91704	18	4	10	4	57
ASE_00297	RNaseP_bact_a links to Rfam database...	0.68	0.58	0.79	57	52903	19	4	11	4	41
ASE_00298	RNaseP_bact_a links to Rfam database...	0.72	0.61	0.85	69	67447	15	3	9	3	44
ASE_00305	RNaseP_bact_b links to Rfam database...	0.82	0.78	0.86	66	54538	22	1	10	11	19
ASE_00318	RNaseP_bact_b links to Rfam database...	0.75	0.66	0.85	78	80108	21	1	13	7	40
ASE_00321	RNaseP_bact_b links to Rfam database...	0.77	0.74	0.81	65	54535	23	1	14	8	23
ASE_00328	RNaseP_bact_b links to Rfam database...	0.81	0.75	0.88	84	72675	19	1	11	7	28
ASE_00332	RNaseP_bact_a links to Rfam database...	0.78	0.67	0.91	92	81709	12	3	6	3	46
ASE_00335	RNaseP_bact_b links to Rfam database...	0.77	0.70	0.85	81	75371	25	1	13	11	35
ASE_00340	RNaseP_bact_a links to Rfam database...	0.75	0.67	0.85	57	45989	17	1	9	7	28
ASE_00342	RNaseP_bact_a links to Rfam database...	0.89	0.83	0.96	95	62382	9	1	3	5	20
ASE_00353	RNaseP_bact_a links to Rfam database...	0.75	0.64	0.88	68	57893	14	2	7	5	39
ASE_00361	RNaseP_bact_a links to Rfam database...	0.69	0.53	0.89	67	75391	13	3	5	5	60
ASE_00362	RNaseP_bact_a links to Rfam database...	0.80	0.71	0.89	65	48132	14	2	6	6	26
ASE_00363	RNaseP_bact_a links to Rfam database...	0.76	0.68	0.84	64	51284	17	2	10	5	30
ASE_00364	RNaseP_bact_a links to Rfam database...	0.76	0.66	0.87	69	54206	15	3	7	5	36
ASE_00366	RNaseP_bact_a links to Rfam database...	0.76	0.67	0.87	66	58577	13	3	7	3	32
ASE_00367	RNaseP_bact_a links to Rfam database...	0.85	0.79	0.91	68	42996	11	2	5	4	18
ASE_00369	RNaseP_bact_a links to Rfam database...	0.79	0.69	0.90	74	55863	13	1	7	5	33
ASE_00372	RNaseP_bact_a links to Rfam database...	0.76	0.65	0.88	65	51929	15	1	8	6	35
ASE_00374	RNaseP_bact_a links to Rfam database...	0.86	0.80	0.93	70	44775	8	2	3	3	18
ASE_00376	RNaseP_bact_a links to Rfam database...	0.73	0.63	0.85	66	56875	15	1	11	3	39
ASE_00377	RNaseP_bact_a links to Rfam database...	0.76	0.65	0.88	70	57550	13	3	7	3	37
ASE_00382	RNaseP_bact_a links to Rfam database...	0.83	0.80	0.87	67	41828	16	2	8	6	17
ASE_00383	RNaseP_bact_a links to Rfam database...	0.77	0.66	0.90	69	54538	13	1	7	5	36
ASE_00384	RNaseP_bact_a links to Rfam database...	0.81	0.74	0.89	68	48440	13	2	6	5	24
ASE_00386	RNaseP_bact_a links to Rfam database...	0.79	0.71	0.88	68	50326	12	2	7	3	28
ASE_00387	RNaseP_bact_a links to Rfam database...	0.71	0.62	0.83	64	55868	17	2	11	4	40
ASE_00388	RNaseP_bact_a links to Rfam database...	0.80	0.73	0.87	65	45678	16	1	9	6	24
ASE_00390	RNaseP_bact_a links to Rfam database...	0.85	0.80	0.89	68	42119	11	2	6	3	17
ASE_00393	RNaseP_bact_a links to Rfam database...	0.74	0.68	0.82	63	47818	19	1	13	5	30
ASE_00394	RNaseP_bact_a links to Rfam database...	0.83	0.74	0.92	69	46896	10	2	4	4	24
ASE_00395	RNaseP_bact_a links to Rfam database...	0.83	0.79	0.87	66	41540	13	2	8	3	18
ASE_00396	RNaseP_bact_a links to Rfam database...	0.86	0.83	0.90	69	41539	12	3	5	4	14
ASE_00397	RNaseP_bact_a links to Rfam database...	0.75	0.64	0.88	67	54539	15	3	6	6	38
ASE_00398	RNaseP_bact_a links to Rfam database...	0.74	0.63	0.87	65	55870	13	1	9	3	39
ASE_00400	RNaseP_bact_a links to Rfam database...	0.79	0.67	0.92	71	57893	12	1	5	6	35
ASE_00401	RNaseP_bact_a links to Rfam database...	0.67	0.51	0.88	64	76955	13	2	7	4	62
ASE_00402	RNaseP_bact_a links to Rfam database...	0.85	0.80	0.89	68	42410	12	2	6	4	17
ASE_00403	RNaseP_bact_a links to Rfam database...	0.79	0.67	0.92	72	55867	12	1	5	6	35
ASE_00404	RNaseP_bact_a links to Rfam database...	0.85	0.80	0.89	68	42995	14	4	4	6	17
ASE_00406	RNaseP_bact_a links to Rfam database...	0.79	0.72	0.86	68	48749	14	2	9	3	26
ASE_00411	RNaseP_bact_a links to Rfam database...	0.70	0.67	0.72	60	49372	27	7	16	4	29
ASE_00412	RNaseP_bact_a links to Rfam database...	0.62	0.54	0.71	57	58231	28	5	18	5	48
ASE_00413	RNaseP_bact_a links to Rfam database...	0.76	0.73	0.79	59	44476	23	4	12	7	22
ASE_00416	RNaseP_bact_a links to Rfam database...	0.74	0.66	0.82	84	77319	23	4	14	5	43
ASE_00419	RNaseP_bact_a links to Rfam database...	0.72	0.61	0.84	63	54871	16	5	7	4	40
ASE_00422	RNaseP_bact_a links to Rfam database...	0.82	0.73	0.91	69	46895	13	1	6	6	25
ASE_00423	RNaseP_bact_a links to Rfam database...	0.75	0.71	0.80	77	56857	23	3	16	4	32
ASE_00427	RNaseP_nuc links to Rfam database...	0.35	0.30	0.40	14	40720	29	9	12	8	32
ASE_00428	RNaseP_bact_a links to Rfam database...	0.75	0.68	0.83	85	76533	21	4	14	3	40
ASE_00430	RNaseP_bact_a links to Rfam database...	0.75	0.66	0.85	64	46896	14	1	10	3	33
ASE_00437	RNaseP_bact_a links to Rfam database...	0.58	0.50	0.69	67	79304	33	1	29	3	68
ASE_00441	RNaseP_bact_a links to Rfam database...	0.70	0.57	0.86	64	64187	13	3	7	3	48
ASE_00448	RNaseP_bact_a links to Rfam database...	0.83	0.79	0.87	88	64160	15	3	10	2	24
ASE_00451	RNaseP_bact_a links to Rfam database...	0.81	0.73	0.91	91	70776	12	1	8	3	34
CRW_00256	SSU_rRNA_bacteria links to Rfam database...	0.82	0.78	0.87	363	1192324	70	13	40	17	105
CRW_00326	SSU_rRNA_eukarya links to Rfam database...	0.64	0.56	0.73	280	1627728	143	17	85	41	222
CRW_00358	SSU_rRNA_eukarya links to Rfam database...	0.56	0.49	0.64	246	1674980	178	15	124	39	261
CRW_00548	5S_rRNA links to Rfam database...	0.90	0.82	1.00	31	7350	3	0	0	3	7
CRW_00552	5S_rRNA links to Rfam database...	0.79	0.69	0.90	27	7110	5	0	3	2	12
CRW_00555	5S_rRNA links to Rfam database...	0.82	0.68	1.00	27	7599	2	0	0	2	13
CRW_00567	5S_rRNA links to Rfam database...	0.85	0.73	1.00	29	7474	2	0	0	2	11
CRW_00570	5S_rRNA links to Rfam database...	0.96	0.92	1.00	34	6869	3	0	0	3	3
CRW_00573	5S_rRNA links to Rfam database...	0.79	0.68	0.93	27	7111	4	0	2	2	13
CRW_00590	SSU_rRNA_bacteria links to Rfam database...	0.85	0.81	0.90	367	1119348	69	4	37	28	85
CRW_00997	SSU_rRNA_bacteria links to Rfam database...	0.83	0.81	0.86	374	1135845	75	15	44	16	90
CRW_01484	5S_rRNA links to Rfam database...	0.88	0.79	0.97	31	7471	2	0	1	1	8
CRW_01485	5S_rRNA links to Rfam database...	0.92	0.87	0.97	34	7468	5	0	1	4	5
CRW_01487	5S_rRNA links to Rfam database...	0.88	0.80	0.97	33	7469	2	0	1	1	8
CRW_01489	5S_rRNA links to Rfam database...	0.93	0.87	1.00	34	7469	3	0	0	3	5
CRW_01491	5S_rRNA links to Rfam database...	0.90	0.81	1.00	35	8350	0	0	0	0	8
CRW_01492	5S_rRNA links to Rfam database...	0.86	0.79	0.94	33	7591	3	0	2	1	9
CRW_01494	5S_rRNA links to Rfam database...	0.87	0.78	0.97	31	7108	2	0	1	1	9
CRW_01497	5S_rRNA links to Rfam database...	0.87	0.75	1.00	30	7110	0	0	0	0	10
CRW_01498	5S_rRNA links to Rfam database...	0.89	0.79	1.00	34	8094	1	0	0	1	9
CRW_01499	5S_rRNA links to Rfam database...	0.72	0.66	0.79	27	7967	8	0	7	1	14
CRW_01500	5S_rRNA links to Rfam database...	0.92	0.84	1.00	32	7718	5	0	0	5	6
CRW_01501	5S_rRNA links to Rfam database...	0.79	0.71	0.89	32	8479	5	0	4	1	13
CRW_01508	5S_rRNA links to Rfam database...	0.87	0.81	0.94	34	7965	3	0	2	1	8
CRW_01532	5S_rRNA links to Rfam database...	0.97	0.95	1.00	35	7105	2	0	0	2	2
CRW_01533	5S_rRNA links to Rfam database...	0.96	0.92	1.00	34	7106	1	0	0	1	3
CRW_01534	5S_rRNA links to Rfam database...	0.96	0.92	1.00	34	7106	3	0	0	3	3
CRW_01535	5S_rRNA links to Rfam database...	0.96	0.92	1.00	34	7106	2	0	0	2	3
CRW_01536	5S_rRNA links to Rfam database...	0.96	0.95	0.97	35	6985	3	0	1	2	2
CRW_01537	5S_rRNA links to Rfam database...	0.96	0.92	1.00	34	7106	2	0	0	2	3
CRW_01539	5S_rRNA links to Rfam database...	0.97	0.95	1.00	35	7105	2	0	0	2	2
CRW_01540	5S_rRNA links to Rfam database...	0.97	0.95	1.00	35	7105	2	0	0	2	2
CRW_01541	5S_rRNA links to Rfam database...	0.85	0.76	0.97	28	7111	3	0	1	2	9
CRW_01542	5S_rRNA links to Rfam database...	0.99	0.97	1.00	36	7104	2	0	0	2	1
CRW_01544	5S_rRNA links to Rfam database...	0.96	0.92	1.00	34	7106	2	0	0	2	3
CRW_01548	5S_rRNA links to Rfam database...	0.97	0.95	1.00	35	6986	2	0	0	2	2
CRW_01555	5S_rRNA links to Rfam database...	0.97	0.95	1.00	35	9010	2	0	0	2	2
CRW_01556	5S_rRNA links to Rfam database...	0.96	0.92	1.00	34	7106	3	0	0	3	3
CRW_01557	5S_rRNA links to Rfam database...	0.96	0.92	1.00	34	7106	2	0	0	2	3
CRW_01559	5S_rRNA links to Rfam database...	0.99	0.97	1.00	36	7224	3	0	0	3	1
CRW_01562	5S_rRNA links to Rfam database...	0.87	0.84	0.91	31	7106	4	0	3	1	6
CRW_01563	5S_rRNA links to Rfam database...	0.85	0.84	0.86	31	6867	6	0	5	1	6
CRW_01566	5S_rRNA links to Rfam database...	0.85	0.73	1.00	27	7113	2	0	0	2	10
CRW_01568	5S_rRNA links to Rfam database...	0.92	0.89	0.94	33	7105	4	0	2	2	4
CRW_01569	5S_rRNA links to Rfam database...	0.89	0.86	0.91	32	7105	4	0	3	1	5
CRW_01570	5S_rRNA links to Rfam database...	0.97	0.95	1.00	35	7105	2	0	0	2	2
CRW_01572	5S_rRNA links to Rfam database...	0.83	0.81	0.86	30	6986	8	0	5	3	7
CRW_01573	5S_rRNA links to Rfam database...	0.96	0.92	1.00	34	7226	2	0	0	2	3
CRW_01578	5S_rRNA links to Rfam database...	0.96	0.92	1.00	34	7106	3	0	0	3	3
CRW_01580	5S_rRNA links to Rfam database...	0.99	0.97	1.00	36	7104	2	0	0	2	1
CRW_01581	5S_rRNA links to Rfam database...	0.96	0.95	0.97	35	7104	2	0	1	1	2
CRW_01583	5S_rRNA links to Rfam database...	0.99	0.97	1.00	36	7104	1	0	0	1	1
CRW_01584	5S_rRNA links to Rfam database...	0.94	0.92	0.97	34	7105	3	0	1	2	3
CRW_01590	5S_rRNA links to Rfam database...	0.83	0.76	0.90	28	7109	5	0	3	2	9
CRW_01593	5S_rRNA links to Rfam database...	0.94	0.89	1.00	33	7107	1	0	0	1	4
CRW_01595	5S_rRNA links to Rfam database...	0.97	0.95	1.00	35	8480	3	0	0	3	2
CRW_01599	5S_rRNA links to Rfam database...	0.96	0.92	1.00	34	7106	2	0	0	2	3
CRW_01603	5S_rRNA links to Rfam database...	0.93	0.86	1.00	32	7108	2	0	0	2	5
CRW_01605	5S_rRNA links to Rfam database...	0.96	0.92	1.00	34	7106	3	0	0	3	3
CRW_01606	5S_rRNA links to Rfam database...	0.94	0.89	1.00	33	7107	2	0	0	2	4
CRW_01608	5S_rRNA links to Rfam database...	0.99	0.97	1.00	36	8349	2	0	0	2	1
CRW_01616	5S_rRNA links to Rfam database...	0.97	0.95	1.00	35	7105	2	0	0	2	2
CRW_01617	5S_rRNA links to Rfam database...	0.97	0.95	1.00	35	7105	2	0	0	2	2
CRW_01620	5S_rRNA links to Rfam database...	0.99	0.97	1.00	36	6985	3	0	0	3	1
CRW_01621	5S_rRNA links to Rfam database...	0.90	0.84	0.97	31	7108	3	0	1	2	6
CRW_01623	5S_rRNA links to Rfam database...	0.97	0.97	0.97	36	7103	3	0	1	2	1
CRW_01625	5S_rRNA links to Rfam database...	0.96	0.92	1.00	34	7106	2	0	0	2	3
PDB_00012	mir-TAR links to Rfam database...	1.00	1.00	1.00	7	399	2	0	0	2	0
PDB_00070	tRNA links to Rfam database...	0.93	0.88	1.00	21	2829	0	0	0	0	3
PDB_00213	Gammaretro_CES links to Rfam database...	0.84	0.71	1.00	29	5021	0	0	0	0	12
PDB_00229	tRNA links to Rfam database...	0.93	0.87	1.00	20	2755	0	0	0	0	3
PDB_00327	tRNA links to Rfam database...	0.98	0.96	1.00	22	3059	0	0	0	0	1
PDB_00362	tRNA links to Rfam database...	0.98	0.95	1.00	21	2829	0	0	0	0	1
PDB_00402	tRNA links to Rfam database...	0.96	0.91	1.00	21	2754	0	0	0	0	2
PDB_00431	tRNA links to Rfam database...	0.95	0.90	1.00	18	2193	0	0	0	0	2
PDB_00474	tRNA links to Rfam database...	0.96	0.91	1.00	21	2680	0	0	0	0	2
PDB_00553	mir-TAR links to Rfam database...	0.60	0.36	1.00	4	461	0	0	0	0	7
PDB_00571	tRNA links to Rfam database...	0.87	0.80	0.95	20	3300	1	1	0	0	5
PDB_00667	tRNA links to Rfam database...	0.98	0.95	1.00	21	2829	0	0	0	0	1
PDB_00741	Entero_5_CRE links to Rfam database...	0.84	0.71	1.00	12	691	0	0	0	0	5
PDB_00810	s2m links to Rfam database...	0.80	0.65	1.00	11	1070	0	0	0	0	6
PDB_00828	Purine links to Rfam database...	0.84	0.70	1.00	19	2466	2	0	0	2	8
PDB_00829	Purine links to Rfam database...	0.86	0.75	1.00	18	2260	2	0	0	2	6
PDB_00876	HIV_FE links to Rfam database...	0.56	0.40	0.80	8	980	2	0	2	0	12
PDB_01002	tRNA links to Rfam database...	0.95	0.90	1.00	19	2756	2	0	0	2	2
PDB_01020	Purine links to Rfam database...	0.86	0.74	1.00	17	2261	3	0	0	3	6
PDB_01050	UnaL2 links to Rfam database...	0.52	0.38	0.71	5	623	3	0	2	1	8
PDB_01053	tRNA links to Rfam database...	1.00	1.00	1.00	16	1362	0	0	0	0	0
PDB_01073	SAM links to Rfam database...	0.79	0.71	0.89	24	4344	4	2	1	1	10
PDB_01114	TPP links to Rfam database...	0.84	0.74	0.95	20	2829	1	0	1	0	7
PDB_01120	SSU_rRNA_bacteria links to Rfam database...	0.78	0.68	0.88	359	1204721	72	7	41	24	168
PDB_01152	HIV_FS2 links to Rfam database...	0.84	0.71	1.00	10	551	0	0	0	0	4
PDB_01236	ykoK links to Rfam database...	0.87	0.76	1.00	41	11587	2	0	0	2	13
RFA_00389	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	2	0	0	2	1
RFA_00390	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	1	0	0	1	1
RFA_00391	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	2	0	0	2	1
RFA_00396	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00402	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	1	0	0	1	0
RFA_00409	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	2	0	0	2	1
RFA_00416	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1471	2	0	0	2	1
RFA_00433	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00434	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00436	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	1	0	0	1	1
RFA_00440	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1470	1	0	0	1	0
RFA_00442	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	1	0	0	1	0
RFA_00444	Hammerhead_3 links to Rfam database...	0.93	0.87	1.00	13	1527	0	0	0	0	2
RFA_00583	Y_RNA links to Rfam database...	0.97	0.93	1.00	14	4936	1	0	0	1	1
RFA_00584	Y_RNA links to Rfam database...	0.93	0.87	1.00	13	2913	7	0	0	7	2
RFA_00585	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4836	5	0	0	5	0
RFA_00586	Y_RNA links to Rfam database...	0.97	0.93	1.00	14	3902	1	0	0	1	1
RFA_00587	Y_RNA links to Rfam database...	0.97	0.93	1.00	14	4837	3	0	0	3	1
RFA_00588	Y_RNA links to Rfam database...	0.97	0.93	1.00	14	4546	1	0	0	1	1
RFA_00589	Y_RNA links to Rfam database...	0.97	0.93	1.00	14	4357	5	0	0	5	1
RFA_00594	Y_RNA links to Rfam database...	0.90	0.87	0.93	13	2761	2	0	1	1	2
RFA_00596	Y_RNA links to Rfam database...	0.93	0.87	1.00	13	5982	2	0	0	2	2
RFA_00599	Telomerase-vert links to Rfam database...	0.86	0.80	0.93	89	101379	16	3	4	9	22
RFA_00601	Telomerase-vert links to Rfam database...	0.77	0.68	0.89	77	99148	20	1	9	10	37
RFA_00658	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	1127	1	0	1	0	14
RFA_00664	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	989	1	0	1	0	14
RFA_00667	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	989	1	0	1	0	14
RFA_00668	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	989	1	0	1	0	14
RFA_00672	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	899	4	0	4	0	13
RFA_00673	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	1127	1	0	1	0	14
RFA_00674	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	1124	4	0	4	0	14
RFA_00675	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	989	1	0	1	0	14
RFA_00677	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	989	1	0	1	0	14
RFA_00678	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	945	1	0	1	0	14
RFA_00680	Hammerhead_1 links to Rfam database...	0.31	0.14	0.67	2	1125	1	0	1	0	12
RFA_00704	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	989	1	0	1	0	14
RFA_00707	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	1032	3	0	3	0	14
RFA_00715	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	945	1	0	1	0	14
RFA_00717	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	902	1	0	1	0	14
RFA_00730	s2m links to Rfam database...	0.78	0.75	0.82	9	892	2	0	2	0	3
RFA_00731	s2m links to Rfam database...	0.78	0.75	0.82	9	892	2	0	2	0	3
RFA_00733	s2m links to Rfam database...	0.78	0.75	0.82	9	892	2	0	2	0	3
RFA_00734	s2m links to Rfam database...	0.78	0.75	0.82	9	892	2	0	2	0	3
RFA_00736	s2m links to Rfam database...	0.78	0.75	0.82	9	892	2	0	2	0	3
RFA_00737	s2m links to Rfam database...	0.78	0.75	0.82	9	892	3	0	2	1	3
RFA_00745	s2m links to Rfam database...	0.96	0.92	1.00	11	935	0	0	0	0	1
RFA_00749	s2m links to Rfam database...	0.78	0.75	0.82	9	892	2	0	2	0	3
RFA_00758	s2m links to Rfam database...	0.78	0.75	0.82	9	892	3	0	2	1	3
RFA_00762	s2m links to Rfam database...	0.78	0.75	0.82	9	892	2	0	2	0	3
RFA_00763	s2m links to Rfam database...	0.96	0.92	1.00	11	892	1	0	0	1	1
RFA_00764	s2m links to Rfam database...	0.96	0.92	1.00	11	892	1	0	0	1	1
RFA_00765	s2m links to Rfam database...	0.78	0.75	0.82	9	892	2	0	2	0	3
RFA_00786	Gammaretro_CES links to Rfam database...	0.95	0.91	1.00	29	5021	0	0	0	0	3
RFA_00791	Gammaretro_CES links to Rfam database...	0.90	0.88	0.93	28	5121	2	0	2	0	4
RFA_00792	Gammaretro_CES links to Rfam database...	0.89	0.84	0.93	27	5021	2	0	2	0	5
RFA_00801	Gammaretro_CES links to Rfam database...	0.89	0.84	0.93	27	5021	2	0	2	0	5
SPR_00007	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00009	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	1	0	0	1	0
SPR_00010	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00012	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	1	0	0	1	0
SPR_00013	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	1	0	0	1	0
SPR_00016	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00017	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00025	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	1	0	0	1	0
SPR_00026	tRNA links to Rfam database...	0.95	0.95	0.95	20	2905	2	0	1	1	1
SPR_00027	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00036	tRNA links to Rfam database...	0.92	0.90	0.95	18	2756	2	0	1	1	2
SPR_00045	tRNA links to Rfam database...	0.95	0.91	1.00	20	2830	0	0	0	0	2
SPR_00064	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00065	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00066	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00068	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00070	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00074	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	1	0	0	1	0
SPR_00079	tRNA links to Rfam database...	0.97	0.95	1.00	18	2467	1	0	0	1	1
SPR_00086	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00087	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	1	0	0	1	0
SPR_00088	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	1	0	0	1	0
SPR_00089	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	1	0	0	1	0
SPR_00090	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	1	0	0	1	0
SPR_00091	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	1	0	0	1	0
SPR_00095	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00111	tRNA links to Rfam database...	1.00	1.00	1.00	21	2680	0	0	0	0	0
SPR_00112	tRNA links to Rfam database...	1.00	1.00	1.00	21	2680	0	0	0	0	0
SPR_00115	tRNA links to Rfam database...	1.00	1.00	1.00	21	2680	0	0	0	0	0
SPR_00117	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00139	tRNA links to Rfam database...	0.95	0.90	1.00	19	2907	1	0	0	1	2
SPR_00153	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00155	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00156	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00176	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	1	0	0	1	0
SPR_00177	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00178	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00191	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00200	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00224	tRNA links to Rfam database...	1.00	1.00	1.00	20	3721	3	0	0	3	0
SPR_00271	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00273	tRNA links to Rfam database...	0.95	0.95	0.95	20	2829	1	0	1	0	1
SPR_00276	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00277	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00294	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00295	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	0	0	0	0	0
SPR_00314	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00315	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00317	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	1	0	0	1	0
SPR_00318	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00321	tRNA links to Rfam database...	1.00	1.00	1.00	21	2982	0	0	0	0	0
SPR_00333	tRNA links to Rfam database...	0.98	0.95	1.00	20	2755	0	0	0	0	1
SPR_00352	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00353	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00357	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00358	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	1	0	0	1	0
SPR_00370	tRNA links to Rfam database...	0.93	0.90	0.95	19	2755	1	0	1	0	2
SPR_00386	tRNA links to Rfam database...	1.00	1.00	1.00	20	4166	0	0	0	0	0
SPR_00414	tRNA links to Rfam database...	0.98	0.95	1.00	20	3550	3	0	0	3	1
SPR_00415	tRNA links to Rfam database...	0.98	0.95	1.00	20	3550	3	0	0	3	1
SPR_00417	tRNA links to Rfam database...	0.95	0.91	1.00	20	3550	3	0	0	3	2
SPR_00418	tRNA links to Rfam database...	0.95	0.91	1.00	20	3550	3	0	0	3	2
SPR_00434	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00435	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00436	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00437	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	0	0	0	0	0
SPR_00438	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	0	0	0	0	0
SPR_00452	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00455	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00456	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00476	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	0	0	0	0	0
SPR_00479	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00482	tRNA links to Rfam database...	1.00	1.00	1.00	21	2680	0	0	0	0	0
SPR_00483	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00487	tRNA links to Rfam database...	0.86	0.82	0.90	18	2681	2	0	2	0	4
SPR_00493	tRNA links to Rfam database...	0.95	0.91	1.00	20	2755	0	0	0	0	2
SPR_00496	tRNA links to Rfam database...	0.98	0.95	1.00	20	2755	0	0	0	0	1
SPR_00497	tRNA links to Rfam database...	0.98	0.95	1.00	20	2755	0	0	0	0	1
SPR_00502	tRNA links to Rfam database...	0.98	0.95	1.00	20	2906	0	0	0	0	1
SPR_00504	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	0	0	0	0	0
SPR_00505	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	1	0	0	1	0
SPR_00506	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00509	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00512	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	1	0	0	1	0
SPR_00513	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	1	0	0	1	0
SPR_00518	tRNA links to Rfam database...	0.97	0.95	1.00	19	2907	0	0	0	0	1
SPR_00548	tRNA links to Rfam database...	0.98	0.95	1.00	20	3383	1	0	0	1	1
SPR_00557	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00561	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00590	tRNA links to Rfam database...	1.00	1.00	1.00	20	2983	1	0	0	1	0
SPR_00593	tRNA links to Rfam database...	1.00	1.00	1.00	19	2756	1	0	0	1	0
SPR_00595	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	0	0	0	0	0
SPR_00598	tRNA links to Rfam database...	0.98	0.95	1.00	20	2983	0	0	0	0	1
SPR_00610	tRNA links to Rfam database...	0.93	0.90	0.95	19	2536	1	0	1	0	2
SPR_00620	tRNA links to Rfam database...	0.98	0.95	1.00	20	2983	0	0	0	0	1
SPR_00721	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00722	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	2	0	0	2	0
SPR_00758	tRNA links to Rfam database...	1.00	1.00	1.00	21	2982	0	0	0	0	0
SPR_00760	tRNA links to Rfam database...	1.00	1.00	1.00	21	3549	0	0	0	0	0
SPR_00777	tRNA links to Rfam database...	1.00	1.00	1.00	20	2608	1	0	0	1	0
SPR_00867	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00868	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00943	tRNA links to Rfam database...	1.00	1.00	1.00	20	2536	0	0	0	0	0
SPR_00957	tRNA links to Rfam database...	1.00	1.00	1.00	21	2982	0	0	0	0	0
SPR_01040	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	0	0	0	0	0
SPR_01088	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_01095	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_01106	tRNA links to Rfam database...	1.00	1.00	1.00	21	2535	0	0	0	0	0
SPR_01117	tRNA links to Rfam database...	0.98	0.95	1.00	20	2983	0	0	0	0	1
SPR_01157	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	0	0	0	0	0
SRP_00006	Metazoa_SRP links to Rfam database...	0.91	0.84	0.98	85	45666	6	0	2	4	16
SRP_00008	Bacteria_small_SRP links to Rfam database...	0.49	0.24	1.00	6	2920	0	0	0	0	19
SRP_00011	Plant_SRP links to Rfam database...	0.78	0.73	0.84	76	46269	22	0	15	7	28
SRP_00015	Plant_SRP links to Rfam database...	0.81	0.75	0.87	74	46275	21	0	11	10	25
SRP_00020	Bacteria_small_SRP links to Rfam database...	0.55	0.30	1.00	10	5555	0	0	0	0	23
SRP_00024	Bacteria_large_SRP links to Rfam database...	0.46	0.25	0.85	22	37649	4	0	4	0	65
SRP_00026	Bacteria_large_SRP links to Rfam database...	0.52	0.31	0.90	27	36826	4	0	3	1	61
SRP_00027	Bacteria_large_SRP links to Rfam database...	0.53	0.31	0.90	27	37098	3	0	3	0	60
SRP_00030	Bacteria_large_SRP links to Rfam database...	0.52	0.31	0.90	27	36826	3	0	3	0	61
SRP_00031	Bacteria_large_SRP links to Rfam database...	0.53	0.31	0.90	28	36284	4	0	3	1	61
SRP_00037	Bacteria_large_SRP links to Rfam database...	0.54	0.32	0.90	28	36554	3	0	3	0	59
SRP_00038	Bacteria_small_SRP links to Rfam database...	0.39	0.18	0.86	6	5043	2	0	1	1	27
SRP_00042	Bacteria_small_SRP links to Rfam database...	0.85	0.76	0.95	19	3985	2	0	1	1	6
SRP_00044	Bacteria_small_SRP links to Rfam database...	0.43	0.19	1.00	6	6099	0	0	0	0	26
SRP_00050	Metazoa_SRP links to Rfam database...	0.95	0.92	0.99	91	44758	6	0	1	5	8
SRP_00051	Bacteria_small_SRP links to Rfam database...	0.41	0.20	0.86	6	5453	2	0	1	1	24
SRP_00054	Bacteria_small_SRP links to Rfam database...	0.40	0.19	0.86	6	5558	2	0	1	1	26
SRP_00057	Bacteria_small_SRP links to Rfam database...	0.41	0.17	1.00	6	6322	0	0	0	0	29
SRP_00058	Bacteria_small_SRP links to Rfam database...	0.40	0.21	0.78	7	5769	3	0	2	1	27
SRP_00066	Metazoa_SRP links to Rfam database...	0.79	0.71	0.89	71	45371	17	0	9	8	29
SRP_00072	Bacteria_small_SRP links to Rfam database...	0.45	0.21	1.00	6	6322	0	0	0	0	23
SRP_00074	Bacteria_small_SRP links to Rfam database...	0.45	0.21	1.00	6	6549	0	0	0	0	23
SRP_00075	Bacteria_small_SRP links to Rfam database...	0.42	0.18	1.00	6	5559	0	0	0	0	28
SRP_00077	Bacteria_small_SRP links to Rfam database...	0.40	0.16	1.00	6	6664	0	0	0	0	31
SRP_00084	Bacteria_small_SRP links to Rfam database...	0.39	0.18	0.86	6	5453	1	0	1	0	28
SRP_00086	Metazoa_SRP links to Rfam database...	0.88	0.83	0.94	83	44165	8	0	5	3	17
SRP_00088	Bacteria_large_SRP links to Rfam database...	0.49	0.28	0.86	25	34162	5	0	4	1	64
SRP_00089	Bacteria_large_SRP links to Rfam database...	0.52	0.30	0.90	27	35748	4	0	3	1	63
SRP_00090	Bacteria_large_SRP links to Rfam database...	0.52	0.30	0.90	27	35481	3	0	3	0	63
SRP_00094	Bacteria_small_SRP links to Rfam database...	0.58	0.33	1.00	8	4087	0	0	0	0	16
SRP_00095	Bacteria_small_SRP links to Rfam database...	0.45	0.24	0.86	6	3998	1	0	1	0	19
SRP_00098	Bacteria_small_SRP links to Rfam database...	0.40	0.16	1.00	6	6435	0	0	0	0	31
SRP_00102	Metazoa_SRP links to Rfam database...	0.82	0.75	0.90	76	44467	12	0	8	4	25
SRP_00103	Metazoa_SRP links to Rfam database...	0.82	0.73	0.93	74	45371	9	0	6	3	28
SRP_00105	Bacteria_small_SRP links to Rfam database...	0.42	0.18	1.00	6	5559	0	0	0	0	28
SRP_00107	Bacteria_small_SRP links to Rfam database...	0.56	0.32	1.00	6	3649	0	0	0	0	13
SRP_00121	Bacteria_small_SRP links to Rfam database...	0.49	0.24	1.00	6	4272	0	0	0	0	19
SRP_00128	Bacteria_small_SRP links to Rfam database...	0.41	0.17	1.00	6	6780	0	0	0	0	30
SRP_00134	Bacteria_large_SRP links to Rfam database...	0.49	0.24	1.00	7	5988	0	0	0	0	22
SRP_00141	Bacteria_small_SRP links to Rfam database...	0.35	0.12	1.00	5	6323	1	0	0	1	36
SRP_00152	Plant_SRP links to Rfam database...	0.85	0.80	0.90	82	45662	20	0	9	11	21
SRP_00161	Bacteria_small_SRP links to Rfam database...	0.52	0.27	1.00	6	2844	0	0	0	0	16
SRP_00163	Bacteria_small_SRP links to Rfam database...	0.48	0.23	1.00	6	3480	0	0	0	0	20
SRP_00164	Bacteria_small_SRP links to Rfam database...	0.38	0.17	0.86	6	6896	1	0	1	0	29
SRP_00170	Bacteria_small_SRP links to Rfam database...	0.85	0.76	0.95	19	4075	2	0	1	1	6
SRP_00171	Metazoa_SRP links to Rfam database...	0.55	0.42	0.71	37	45399	23	3	12	8	51
SRP_00173	Bacteria_large_SRP links to Rfam database...	0.52	0.30	0.90	27	38196	3	0	3	0	63
SRP_00174	Bacteria_large_SRP links to Rfam database...	0.52	0.31	0.87	27	38750	6	0	4	2	59
SRP_00178	Plant_SRP links to Rfam database...	0.85	0.78	0.93	80	45667	17	0	6	11	22
SRP_00179	Plant_SRP links to Rfam database...	0.86	0.80	0.92	84	45965	15	0	7	8	21
SRP_00181	Plant_SRP links to Rfam database...	0.80	0.74	0.86	75	45969	21	0	12	9	27
SRP_00182	Plant_SRP links to Rfam database...	0.89	0.84	0.93	85	45965	13	0	6	7	16
SRP_00184	Plant_SRP links to Rfam database...	0.83	0.79	0.87	79	45965	24	0	12	12	21
SRP_00188	Plant_SRP links to Rfam database...	0.85	0.81	0.89	64	31053	13	0	8	5	15
SRP_00194	Bacteria_small_SRP links to Rfam database...	0.44	0.24	0.83	5	3234	2	0	1	1	16
SRP_00200	Bacteria_small_SRP links to Rfam database...	0.41	0.17	1.00	6	6897	0	0	0	0	30
SRP_00209	Bacteria_small_SRP links to Rfam database...	0.64	0.41	1.00	11	4645	0	0	0	0	16
SRP_00213	Bacteria_small_SRP links to Rfam database...	0.56	0.32	1.00	8	4178	0	0	0	0	17
SRP_00215	Bacteria_small_SRP links to Rfam database...	0.49	0.24	1.00	6	3234	0	0	0	0	19
SRP_00228	Metazoa_SRP links to Rfam database...	0.92	0.86	0.99	82	45368	10	0	1	9	13
SRP_00231	Bacteria_small_SRP links to Rfam database...	0.39	0.18	0.86	6	5453	1	0	1	0	28
SRP_00233	Bacteria_small_SRP links to Rfam database...	0.39	0.18	0.86	6	5144	2	0	1	1	27
SRP_00234	Bacteria_large_SRP links to Rfam database...	0.53	0.31	0.90	27	36285	4	0	3	1	59
SRP_00243	Bacteria_small_SRP links to Rfam database...	0.44	0.19	1.00	6	5145	0	0	0	0	25
SRP_00244	Bacteria_small_SRP links to Rfam database...	0.36	0.13	1.00	5	6898	1	0	0	1	34
SRP_00250	Bacteria_small_SRP links to Rfam database...	0.41	0.17	1.00	6	6780	0	0	0	0	30
SRP_00251	Bacteria_small_SRP links to Rfam database...	0.41	0.17	1.00	6	7015	0	0	0	0	30
SRP_00266	Bacteria_small_SRP links to Rfam database...	0.45	0.21	1.00	6	4650	0	0	0	0	23
SRP_00268	Bacteria_small_SRP links to Rfam database...	0.82	0.70	0.95	19	4166	2	0	1	1	8
SRP_00269	Bacteria_small_SRP links to Rfam database...	0.43	0.18	1.00	6	5044	1	0	0	1	27
SRP_00270	Bacteria_small_SRP links to Rfam database...	0.37	0.16	0.83	5	4650	2	0	1	1	26
SRP_00271	Bacteria_small_SRP links to Rfam database...	0.50	0.25	1.00	6	3234	0	0	0	0	18
SRP_00273	Bacteria_small_SRP links to Rfam database...	0.48	0.25	0.91	10	6775	1	0	1	0	30
SRP_00274	Bacteria_small_SRP links to Rfam database...	0.40	0.16	1.00	6	6897	0	0	0	0	32
SRP_00295	Bacteria_small_SRP links to Rfam database...	0.36	0.13	1.00	5	6898	1	0	0	1	33
SRP_00303	Bacteria_small_SRP links to Rfam database...	0.43	0.19	1.00	6	6664	0	0	0	0	26
SRP_00308	Bacteria_large_SRP links to Rfam database...	0.29	0.13	0.69	11	36299	5	0	5	0	77
SRP_00310	Bacteria_small_SRP links to Rfam database...	0.51	0.26	1.00	6	2920	0	0	0	0	17
SRP_00312	Bacteria_small_SRP links to Rfam database...	0.84	0.74	0.95	20	4165	2	0	1	1	7
SRP_00315	Bacteria_small_SRP links to Rfam database...	0.59	0.35	1.00	8	2918	0	0	0	0	15
SRP_00317	Metazoa_SRP links to Rfam database...	0.92	0.87	0.98	85	45063	7	0	2	5	13
SRP_00318	Bacteria_small_SRP links to Rfam database...	0.51	0.26	1.00	6	2997	0	0	0	0	17
SRP_00325	Bacteria_small_SRP links to Rfam database...	0.43	0.21	0.88	7	4363	2	0	1	1	26
SRP_00326	Bacteria_small_SRP links to Rfam database...	0.40	0.16	1.00	5	5045	1	0	0	1	26
SRP_00333	Bacteria_small_SRP links to Rfam database...	0.42	0.18	1.00	6	5145	0	0	0	0	28
SRP_00335	Bacteria_large_SRP links to Rfam database...	0.39	0.15	1.00	6	35239	0	0	0	0	33
SRP_00337	Bacteria_large_SRP links to Rfam database...	0.54	0.32	0.91	29	35479	4	0	3	1	62
SRP_00338	Bacteria_small_SRP links to Rfam database...	0.41	0.17	1.00	6	5454	0	0	0	0	30
SRP_00341	Bacteria_small_SRP links to Rfam database...	0.44	0.19	1.00	6	4747	0	0	0	0	25
SRP_00342	Bacteria_small_SRP links to Rfam database...	0.49	0.24	1.00	6	3999	0	0	0	0	19
SRP_00347	Metazoa_SRP links to Rfam database...	0.88	0.82	0.95	79	46582	15	0	4	11	17
SRP_00350	Bacteria_small_SRP links to Rfam database...	0.84	0.74	0.95	20	3895	1	0	1	0	7
SRP_00357	Bacteria_small_SRP links to Rfam database...	0.41	0.17	1.00	6	5350	0	0	0	0	30
SRP_00358	Bacteria_small_SRP links to Rfam database...	0.41	0.17	1.00	6	6322	0	0	0	0	29
SRP_00367	Bacteria_small_SRP links to Rfam database...	0.41	0.17	1.00	6	6780	0	0	0	0	29
SRP_00368	Metazoa_SRP links to Rfam database...	0.89	0.82	0.98	80	43874	9	0	2	7	18
SRP_00369	Bacteria_small_SRP links to Rfam database...	0.41	0.17	1.00	6	5772	0	0	0	0	29
SRP_00383	Bacteria_small_SRP links to Rfam database...	0.50	0.25	1.00	6	3234	0	0	0	0	18
TMR_00017	tmRNA links to Rfam database...	0.71	0.55	0.92	56	67100	8	1	4	3	46
TMR_00018	tmRNA links to Rfam database...	0.63	0.52	0.76	48	64557	21	6	9	6	44
TMR_00038	tmRNA links to Rfam database...	0.61	0.52	0.73	57	71175	26	5	16	5	53
TMR_00042	tmRNA links to Rfam database...	0.62	0.49	0.79	48	62774	13	4	9	0	50
TMR_00046	tmRNA links to Rfam database...	0.46	0.36	0.58	35	62775	26	4	21	1	61
TMR_00048	tmRNA links to Rfam database...	0.63	0.52	0.77	49	64916	16	7	8	1	46
TMR_00080	tmRNA links to Rfam database...	0.64	0.51	0.80	49	70439	13	7	5	1	47
TMR_00082	tmRNA links to Rfam database...	0.57	0.45	0.73	43	67837	20	6	10	4	53
TMR_00123	tmRNA links to Rfam database...	0.68	0.52	0.88	53	66370	12	1	6	5	48
TMR_00137	tmRNA links to Rfam database...	0.69	0.60	0.79	53	61008	20	7	7	6	36
TMR_00142	tmRNA links to Rfam database...	0.50	0.40	0.61	41	70809	31	10	16	5	61
TMR_00207	tmRNA links to Rfam database...	0.60	0.45	0.81	46	72333	18	1	10	7	57
TMR_00257	tmRNA links to Rfam database...	0.71	0.58	0.88	57	67096	13	3	5	5	41
TMR_00271	tmRNA links to Rfam database...	0.59	0.48	0.72	44	64200	19	6	11	2	47
TMR_00332	tmRNA links to Rfam database...	0.70	0.56	0.89	55	67099	12	2	5	5	44
TMR_00366	tmRNA links to Rfam database...	0.48	0.41	0.57	41	67824	35	9	22	4	59
TMR_00378	tmRNA links to Rfam database...	0.50	0.41	0.62	40	67831	34	8	17	9	57
TMR_00399	tmRNA links to Rfam database...	0.70	0.61	0.81	57	64910	21	6	7	8	37
TMR_00404	tmRNA links to Rfam database...	0.54	0.45	0.66	41	67466	22	8	13	1	51
TMR_00427	tmRNA links to Rfam database...	0.56	0.43	0.74	42	67471	15	9	6	0	55
TMR_00443	tmRNA links to Rfam database...	0.76	0.63	0.93	65	67091	11	2	3	6	39
TMR_00451	tmRNA links to Rfam database...	0.57	0.51	0.65	45	63477	32	11	13	8	44
TMR_00458	tmRNA links to Rfam database...	0.67	0.57	0.78	53	63478	19	7	8	4	40
TMR_00469	tmRNA links to Rfam database...	0.73	0.61	0.88	61	64551	11	4	4	3	39
TMR_00472	tmRNA links to Rfam database...	0.67	0.58	0.79	56	64549	19	9	6	4	41
TMR_00519	tmRNA links to Rfam database...	0.63	0.54	0.74	51	63121	25	7	11	7	44
TMR_00520	tmRNA links to Rfam database...	0.65	0.55	0.78	54	63121	18	1	14	3	45
TMR_00522	tmRNA links to Rfam database...	0.62	0.51	0.77	49	63126	19	6	9	4	48
TMR_00528	tmRNA links to Rfam database...	0.62	0.51	0.75	49	63125	20	5	11	4	48
TMR_00540	tmRNA links to Rfam database...	0.69	0.58	0.83	60	73464	14	7	5	2	44
TMR_00568	tmRNA links to Rfam database...	0.75	0.66	0.87	65	60651	16	2	8	6	34
TMR_00571	tmRNA links to Rfam database...	0.77	0.68	0.88	67	60650	15	2	7	6	32
TMR_00580	tmRNA links to Rfam database...	0.76	0.65	0.88	65	60652	15	2	7	6	35
TMR_00584	tmRNA links to Rfam database...	0.78	0.66	0.93	64	61006	13	2	3	8	33
TMR_00586	tmRNA links to Rfam database...	0.72	0.63	0.82	61	61001	19	5	8	6	36
TMR_00616	tmRNA links to Rfam database...	0.68	0.57	0.81	56	67092	17	7	6	4	43
TMR_00699	tmRNA links to Rfam database...	0.69	0.54	0.87	55	67098	9	1	7	1	47
TMR_00702	tmRNA links to Rfam database...	0.60	0.45	0.79	45	67104	17	3	9	5	55
TMR_00703	tmRNA links to Rfam database...	0.71	0.59	0.87	58	67461	14	3	6	5	41

^top

Performance of Sfold - scored lower in this pairwise comparison

1. Total counts & total scores for Sfold

Total Base Pair Counts
Total TP	19142
Total TN	22937142
Total FP	10814
Total FP CONTRA	1290
Total FP INCONS	8099
Total FP COMP	1425
Total FN	16144

Total Scores
MCC	0.603
Average MCC ± 95% Confidence Intervals	0.642 ± 0.019
Sensitivity	0.542
Positive Predictive Value	0.671
Nr of predictions	558

^top

2. Individual counts for Sfold [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00004	RNaseP_bact_a links to Rfam database...	0.74	0.66	0.83	64	47818	13	7	6	0	33
ASE_00005	RNaseP_bact_a links to Rfam database...	0.69	0.58	0.83	68	57888	18	0	14	4	49
ASE_00006	RNaseP_bact_a links to Rfam database...	0.73	0.62	0.85	58	47518	12	1	9	2	35
ASE_00007	RNaseP_bact_a links to Rfam database...	0.59	0.55	0.62	61	59587	42	1	36	5	49
ASE_00012	RNaseP_bact_a links to Rfam database...	0.66	0.54	0.80	66	73838	21	2	14	5	57
ASE_00018	RNaseP_bact_a links to Rfam database...	0.81	0.73	0.91	98	80493	11	0	10	1	36
ASE_00020	RNaseP_bact_a links to Rfam database...	0.58	0.52	0.66	65	73822	33	6	27	0	61
ASE_00021	RNaseP_bact_a links to Rfam database...	0.66	0.51	0.86	82	104101	18	0	13	5	78
ASE_00022	RNaseP_bact_b links to Rfam database...	0.50	0.46	0.54	57	82922	56	3	46	7	67
ASE_00028	RNaseP_bact_b links to Rfam database...	0.61	0.55	0.67	69	84563	43	1	33	9	57
ASE_00035	RNaseP_bact_a links to Rfam database...	0.35	0.28	0.45	33	70426	45	8	33	4	85
ASE_00037	RNaseP_bact_a links to Rfam database...	0.55	0.49	0.61	54	59252	34	0	34	0	56
ASE_00040	RNaseP_bact_a links to Rfam database...	0.63	0.51	0.78	68	78916	23	1	18	4	65
ASE_00041	RNaseP_bact_a links to Rfam database...	0.56	0.52	0.62	56	57539	37	2	33	2	52
ASE_00042	RNaseP_bact_a links to Rfam database...	0.58	0.52	0.64	75	89983	43	3	39	1	70
ASE_00044	RNaseP_bact_a links to Rfam database...	0.73	0.70	0.78	73	54521	26	3	18	5	32
ASE_00045	RNaseP_bact_b links to Rfam database...	0.62	0.59	0.65	47	47206	33	7	18	8	33
ASE_00064	RNaseP_bact_a links to Rfam database...	0.52	0.44	0.61	39	45387	31	1	24	6	50
ASE_00068	RNaseP_bact_a links to Rfam database...	0.48	0.39	0.59	33	37619	24	2	21	1	52
ASE_00074	RNaseP_bact_a links to Rfam database...	0.60	0.57	0.64	68	67790	38	3	35	0	51
ASE_00075	RNaseP_bact_a links to Rfam database...	0.73	0.64	0.84	103	108689	23	2	17	4	59
ASE_00077	RNaseP_bact_a links to Rfam database...	0.57	0.49	0.66	42	45086	22	6	16	0	44
ASE_00078	RNaseP_bact_a links to Rfam database...	0.65	0.59	0.71	49	43002	21	1	19	1	34
ASE_00080	RNaseP_bact_a links to Rfam database...	0.49	0.46	0.52	57	71521	56	5	48	3	66
ASE_00081	RNaseP_bact_a links to Rfam database...	0.60	0.53	0.69	51	49696	24	0	23	1	46
ASE_00082	RNaseP_bact_a links to Rfam database...	0.73	0.61	0.87	71	70418	23	0	11	12	45
ASE_00083	RNaseP_bact_a links to Rfam database...	0.81	0.75	0.87	83	62386	17	0	12	5	27
ASE_00084	RNaseP_bact_a links to Rfam database...	0.75	0.69	0.81	68	53544	19	3	13	3	31
ASE_00090	RNaseP_bact_a links to Rfam database...	0.66	0.58	0.74	59	55531	22	1	20	1	42
ASE_00092	RNaseP_bact_a links to Rfam database...	0.80	0.73	0.89	82	63454	12	3	7	2	31
ASE_00099	RNaseP_bact_a links to Rfam database...	0.51	0.50	0.53	60	64506	56	6	48	2	60
ASE_00104	RNaseP_bact_a links to Rfam database...	0.65	0.56	0.75	67	64172	24	2	20	2	52
ASE_00105	RNaseP_bact_a links to Rfam database...	0.45	0.40	0.52	44	64176	44	5	36	3	67
ASE_00107	RNaseP_bact_a links to Rfam database...	0.67	0.55	0.81	70	73067	17	0	16	1	57
ASE_00114	RNaseP_bact_b links to Rfam database...	0.38	0.32	0.45	25	45395	36	6	25	5	52
ASE_00115	RNaseP_bact_a links to Rfam database...	0.65	0.52	0.80	53	54549	19	0	13	6	48
ASE_00118	RNaseP_bact_a links to Rfam database...	0.52	0.46	0.59	47	60647	34	3	29	2	55
ASE_00119	RNaseP_bact_a links to Rfam database...	0.87	0.82	0.92	89	62738	9	1	7	1	19
ASE_00123	RNaseP_bact_a links to Rfam database...	0.34	0.28	0.41	24	38444	39	3	32	4	61
ASE_00125	RNaseP_bact_a links to Rfam database...	0.71	0.58	0.88	51	39282	7	0	7	0	37
ASE_00126	RNaseP_bact_a links to Rfam database...	0.83	0.79	0.88	65	40396	13	1	8	4	17
ASE_00128	RNaseP_bact_a links to Rfam database...	0.73	0.65	0.81	65	53221	21	1	14	6	35
ASE_00129	RNaseP_bact_a links to Rfam database...	0.51	0.47	0.56	52	62742	44	2	39	3	59
ASE_00131	RNaseP_bact_a links to Rfam database...	0.66	0.51	0.86	43	39290	16	0	7	9	42
ASE_00134	RNaseP_bact_a links to Rfam database...	0.36	0.33	0.40	31	50326	46	5	41	0	64
ASE_00135	RNaseP_bact_a links to Rfam database...	0.50	0.45	0.56	49	63103	42	0	38	4	60
ASE_00136	RNaseP_bact_a links to Rfam database...	0.70	0.61	0.81	56	48136	18	0	13	5	36
ASE_00137	RNaseP_bact_a links to Rfam database...	0.55	0.44	0.69	43	48454	22	1	18	3	55
ASE_00138	RNaseP_bact_a links to Rfam database...	0.53	0.52	0.54	42	40392	38	4	32	2	39
ASE_00140	RNaseP_bact_a links to Rfam database...	0.71	0.57	0.90	71	70797	8	2	6	0	54
ASE_00142	RNaseP_bact_a links to Rfam database...	0.64	0.54	0.76	66	67074	23	3	18	2	56
ASE_00146	RNaseP_bact_a links to Rfam database...	0.47	0.36	0.62	45	70803	29	1	27	1	79
ASE_00153	RNaseP_nuc links to Rfam database...	0.69	0.67	0.70	49	57560	61	2	19	40	24
ASE_00161	RNaseP_bact_b links to Rfam database...	0.28	0.29	0.28	25	53540	63	14	49	0	62
ASE_00163	RNaseP_bact_a links to Rfam database...	0.49	0.44	0.55	41	53226	43	5	29	9	52
ASE_00165	RNaseP_bact_a links to Rfam database...	0.60	0.56	0.63	57	52885	34	9	24	1	44
ASE_00170	RNaseP_bact_a links to Rfam database...	0.64	0.54	0.76	50	48762	19	2	14	3	43
ASE_00171	RNaseP_bact_a links to Rfam database...	0.61	0.60	0.62	56	48426	36	7	27	2	38
ASE_00172	RNaseP_bact_a links to Rfam database...	0.74	0.61	0.90	65	58924	7	2	5	0	41
ASE_00174	RNaseP_bact_a links to Rfam database...	0.47	0.44	0.49	48	60978	51	3	46	2	61
ASE_00175	RNaseP_bact_a links to Rfam database...	0.70	0.63	0.79	67	59946	22	3	15	4	40
ASE_00179	RNaseP_bact_a links to Rfam database...	0.64	0.65	0.63	55	44166	33	7	25	1	29
ASE_00180	RNaseP_bact_a links to Rfam database...	0.71	0.68	0.75	68	51269	29	2	21	6	32
ASE_00181	RNaseP_bact_a links to Rfam database...	0.55	0.54	0.56	57	57528	51	3	42	6	49
ASE_00182	RNaseP_bact_a links to Rfam database...	0.53	0.49	0.57	67	84137	51	3	48	0	69
ASE_00183	RNaseP_bact_a links to Rfam database...	0.73	0.71	0.75	80	61319	30	0	26	4	33
ASE_00184	RNaseP_bact_a links to Rfam database...	0.69	0.63	0.76	64	54531	21	3	17	1	38
ASE_00185	RNaseP_bact_a links to Rfam database...	0.77	0.70	0.86	89	73432	21	3	12	6	39
ASE_00186	RNaseP_bact_a links to Rfam database...	0.73	0.70	0.77	92	78884	33	3	24	6	40
ASE_00190	RNaseP_bact_b links to Rfam database...	0.65	0.46	0.93	41	45407	5	0	3	2	49
ASE_00197	RNaseP_bact_a links to Rfam database...	0.58	0.51	0.66	74	89141	44	1	37	6	71
ASE_00198	RNaseP_bact_a links to Rfam database...	0.63	0.62	0.64	63	52552	35	6	29	0	39
ASE_00203	RNaseP_bact_a links to Rfam database...	0.72	0.61	0.84	59	46595	11	4	7	0	37
ASE_00212	RNaseP_bact_a links to Rfam database...	0.73	0.68	0.79	100	93835	30	2	24	4	48
ASE_00214	RNaseP_bact_a links to Rfam database...	0.79	0.77	0.82	79	56184	22	3	14	5	24
ASE_00215	RNaseP_bact_a links to Rfam database...	0.55	0.51	0.60	50	48432	37	4	30	3	49
ASE_00216	RNaseP_bact_a links to Rfam database...	0.70	0.65	0.76	53	39270	17	5	12	0	29
ASE_00217	RNaseP_bact_a links to Rfam database...	0.44	0.34	0.57	31	40416	26	1	22	3	59
ASE_00221	RNaseP_bact_a links to Rfam database...	0.57	0.44	0.73	52	64549	22	1	18	3	65
ASE_00228	RNaseP_bact_a links to Rfam database...	0.69	0.62	0.78	53	46903	15	11	4	0	33
ASE_00229	RNaseP_bact_a links to Rfam database...	0.63	0.60	0.66	52	42407	28	8	19	1	35
ASE_00231	RNaseP_bact_a links to Rfam database...	0.64	0.64	0.66	61	47802	33	5	27	1	35
ASE_00232	RNaseP_bact_a links to Rfam database...	0.65	0.61	0.69	51	38429	25	3	20	2	33
ASE_00234	RNaseP_bact_a links to Rfam database...	0.56	0.45	0.69	58	75382	30	1	25	4	71
ASE_00238	RNaseP_bact_a links to Rfam database...	0.49	0.47	0.51	54	64155	56	1	51	4	60
ASE_00241	RNaseP_bact_a links to Rfam database...	0.66	0.49	0.88	43	43907	7	0	6	1	44
ASE_00242	RNaseP_bact_a links to Rfam database...	0.69	0.60	0.81	67	60992	18	0	16	2	45
ASE_00248	RNaseP_bact_a links to Rfam database...	0.62	0.54	0.70	62	62393	30	1	25	4	52
ASE_00254	RNaseP_bact_a links to Rfam database...	0.80	0.66	0.98	54	36801	1	0	1	0	28
ASE_00255	RNaseP_bact_a links to Rfam database...	0.72	0.66	0.78	86	74581	25	3	21	1	44
ASE_00257	RNaseP_bact_a links to Rfam database...	0.71	0.56	0.90	54	50980	6	0	6	0	43
ASE_00263	RNaseP_bact_a links to Rfam database...	0.69	0.63	0.77	75	70403	23	5	17	1	45
ASE_00267	RNaseP_bact_a links to Rfam database...	0.54	0.35	0.84	31	45113	10	0	6	4	57
ASE_00270	RNaseP_bact_a links to Rfam database...	0.68	0.66	0.69	85	72267	40	6	32	2	43
ASE_00274	RNaseP_bact_a links to Rfam database...	0.51	0.48	0.54	49	55521	41	8	33	0	54
ASE_00279	RNaseP_bact_a links to Rfam database...	0.71	0.53	0.95	54	53244	4	0	3	1	47
ASE_00280	RNaseP_bact_a links to Rfam database...	0.65	0.57	0.75	56	51928	20	2	17	1	42
ASE_00281	RNaseP_bact_a links to Rfam database...	0.72	0.56	0.94	49	44499	9	0	3	6	39
ASE_00282	RNaseP_bact_a links to Rfam database...	0.55	0.47	0.64	60	77721	35	1	33	1	67
ASE_00283	RNaseP_bact_a links to Rfam database...	0.51	0.42	0.63	45	61704	30	3	24	3	62
ASE_00284	RNaseP_bact_a links to Rfam database...	0.64	0.61	0.67	66	58213	39	2	30	7	42
ASE_00285	RNaseP_bact_a links to Rfam database...	0.72	0.67	0.77	82	68900	32	0	24	8	40
ASE_00286	RNaseP_bact_a links to Rfam database...	0.44	0.42	0.46	39	46580	52	3	43	6	53
ASE_00287	RNaseP_bact_a links to Rfam database...	0.73	0.68	0.78	70	54856	26	2	18	6	33
ASE_00292	RNaseP_bact_a links to Rfam database...	0.68	0.61	0.76	84	81699	30	2	25	3	54
ASE_00294	RNaseP_bact_a links to Rfam database...	0.80	0.72	0.89	123	114343	17	2	13	2	48
ASE_00296	RNaseP_bact_a links to Rfam database...	0.24	0.22	0.27	32	91686	89	8	80	1	113
ASE_00297	RNaseP_bact_a links to Rfam database...	0.61	0.50	0.75	49	52910	16	1	15	0	49
ASE_00298	RNaseP_bact_a links to Rfam database...	0.61	0.52	0.70	59	67444	27	4	21	2	54
ASE_00305	RNaseP_bact_b links to Rfam database...	0.51	0.39	0.66	33	54565	22	1	16	5	52
ASE_00318	RNaseP_bact_b links to Rfam database...	0.64	0.56	0.74	66	80111	27	7	16	4	52
ASE_00321	RNaseP_bact_b links to Rfam database...	0.62	0.39	1.00	34	54581	0	0	0	0	54
ASE_00328	RNaseP_bact_b links to Rfam database...	0.45	0.41	0.48	46	72676	54	3	46	5	66
ASE_00332	RNaseP_bact_a links to Rfam database...	0.53	0.51	0.55	70	81683	58	2	55	1	68
ASE_00335	RNaseP_bact_b links to Rfam database...	0.55	0.45	0.68	52	75390	30	3	21	6	64
ASE_00340	RNaseP_bact_a links to Rfam database...	0.75	0.73	0.77	62	45975	25	6	13	6	23
ASE_00342	RNaseP_bact_a links to Rfam database...	0.66	0.57	0.78	65	62398	19	0	18	1	50
ASE_00353	RNaseP_bact_a links to Rfam database...	0.59	0.48	0.74	51	57901	20	2	16	2	56
ASE_00361	RNaseP_bact_a links to Rfam database...	0.50	0.47	0.53	60	75353	57	6	47	4	67
ASE_00362	RNaseP_bact_a links to Rfam database...	0.66	0.60	0.71	55	48128	25	3	19	3	36
ASE_00363	RNaseP_bact_a links to Rfam database...	0.57	0.54	0.60	51	51275	35	1	33	1	43
ASE_00364	RNaseP_bact_a links to Rfam database...	0.38	0.33	0.43	35	54204	47	4	42	1	70
ASE_00366	RNaseP_bact_a links to Rfam database...	0.58	0.59	0.57	58	58552	45	9	34	2	40
ASE_00367	RNaseP_bact_a links to Rfam database...	0.43	0.38	0.49	33	43004	34	4	30	0	53
ASE_00369	RNaseP_bact_a links to Rfam database...	0.75	0.68	0.82	73	55856	17	1	15	1	34
ASE_00372	RNaseP_bact_a links to Rfam database...	0.73	0.69	0.77	69	51913	26	4	17	5	31
ASE_00374	RNaseP_bact_a links to Rfam database...	0.39	0.38	0.42	33	44771	46	10	36	0	55
ASE_00376	RNaseP_bact_a links to Rfam database...	0.57	0.54	0.60	57	56858	43	3	35	5	48
ASE_00377	RNaseP_bact_a links to Rfam database...	0.70	0.67	0.73	72	57531	33	4	23	6	35
ASE_00382	RNaseP_bact_a links to Rfam database...	0.58	0.54	0.63	45	41833	30	6	21	3	39
ASE_00383	RNaseP_bact_a links to Rfam database...	0.58	0.53	0.63	56	54526	35	5	28	2	49
ASE_00384	RNaseP_bact_a links to Rfam database...	0.64	0.43	0.93	40	48473	7	0	3	4	52
ASE_00386	RNaseP_bact_a links to Rfam database...	0.57	0.53	0.61	51	50319	38	3	30	5	45
ASE_00387	RNaseP_bact_a links to Rfam database...	0.60	0.46	0.79	48	55884	17	1	12	4	56
ASE_00388	RNaseP_bact_a links to Rfam database...	0.72	0.67	0.78	60	45676	20	0	17	3	29
ASE_00390	RNaseP_bact_a links to Rfam database...	0.71	0.58	0.88	49	42139	15	2	5	8	36
ASE_00393	RNaseP_bact_a links to Rfam database...	0.50	0.41	0.60	38	47832	32	1	24	7	55
ASE_00394	RNaseP_bact_a links to Rfam database...	0.80	0.77	0.84	72	46885	17	2	12	3	21
ASE_00395	RNaseP_bact_a links to Rfam database...	0.81	0.70	0.94	59	41553	8	0	4	4	25
ASE_00396	RNaseP_bact_a links to Rfam database...	0.47	0.37	0.60	31	41564	25	1	20	4	52
ASE_00397	RNaseP_bact_a links to Rfam database...	0.46	0.41	0.52	43	54533	39	5	34	0	62
ASE_00398	RNaseP_bact_a links to Rfam database...	0.69	0.64	0.74	67	55855	25	1	22	2	37
ASE_00400	RNaseP_bact_a links to Rfam database...	0.74	0.67	0.82	71	57883	17	1	15	1	35
ASE_00401	RNaseP_bact_a links to Rfam database...	0.54	0.56	0.53	70	76897	61	10	51	0	56
ASE_00402	RNaseP_bact_a links to Rfam database...	0.64	0.45	0.90	38	42444	7	0	4	3	47
ASE_00403	RNaseP_bact_a links to Rfam database...	0.57	0.45	0.73	48	55879	18	1	17	0	59
ASE_00404	RNaseP_bact_a links to Rfam database...	0.62	0.54	0.71	46	43006	25	0	19	6	39
ASE_00406	RNaseP_bact_a links to Rfam database...	0.73	0.67	0.79	63	48748	21	6	11	4	31
ASE_00411	RNaseP_bact_a links to Rfam database...	0.29	0.27	0.32	24	49379	53	6	46	1	65
ASE_00412	RNaseP_bact_a links to Rfam database...	0.56	0.50	0.62	53	58225	33	8	25	0	52
ASE_00413	RNaseP_bact_a links to Rfam database...	0.43	0.42	0.44	34	44474	43	13	30	0	47
ASE_00416	RNaseP_bact_a links to Rfam database...	0.70	0.67	0.73	85	77305	35	3	28	4	42
ASE_00419	RNaseP_bact_a links to Rfam database...	0.75	0.73	0.77	75	54849	26	4	18	4	28
ASE_00422	RNaseP_bact_a links to Rfam database...	0.69	0.63	0.77	59	46894	25	0	18	7	35
ASE_00423	RNaseP_bact_a links to Rfam database...	0.60	0.54	0.66	59	56864	32	4	26	2	50
ASE_00427	RNaseP_nuc links to Rfam database...	0.14	0.13	0.16	6	40718	39	8	23	8	40
ASE_00428	RNaseP_bact_a links to Rfam database...	0.61	0.40	0.94	50	76583	4	0	3	1	75
ASE_00430	RNaseP_bact_a links to Rfam database...	0.65	0.62	0.67	60	46882	35	5	24	6	37
ASE_00437	RNaseP_bact_a links to Rfam database...	0.40	0.39	0.42	52	79277	73	5	67	1	83
ASE_00441	RNaseP_bact_a links to Rfam database...	0.78	0.74	0.81	83	64159	25	3	16	6	29
ASE_00448	RNaseP_bact_a links to Rfam database...	0.23	0.22	0.24	25	64155	87	6	75	6	87
ASE_00451	RNaseP_bact_a links to Rfam database...	0.62	0.52	0.73	65	70787	24	2	22	0	60
CRW_00256	SSU_rRNA_bacteria links to Rfam database...	0.37	0.33	0.42	155	1192370	232	35	180	17	313
CRW_00326	SSU_rRNA_eukarya links to Rfam database...	0.46	0.37	0.56	187	1627778	175	32	113	30	315
CRW_00358	SSU_rRNA_eukarya links to Rfam database...	0.38	0.33	0.43	166	1674980	241	44	175	22	341
CRW_00548	5S_rRNA links to Rfam database...	0.83	0.76	0.91	29	7349	5	0	3	2	9
CRW_00552	5S_rRNA links to Rfam database...	0.75	0.59	0.96	23	7116	3	0	1	2	16
CRW_00555	5S_rRNA links to Rfam database...	0.74	0.55	1.00	22	7604	0	0	0	0	18
CRW_00567	5S_rRNA links to Rfam database...	0.47	0.35	0.64	14	7481	10	0	8	2	26
CRW_00570	5S_rRNA links to Rfam database...	0.88	0.89	0.87	33	6865	8	0	5	3	4
CRW_00573	5S_rRNA links to Rfam database...	0.28	0.25	0.31	10	7108	22	0	22	0	30
CRW_00590	SSU_rRNA_bacteria links to Rfam database...	0.58	0.40	0.84	179	1119542	50	5	30	15	273
CRW_00997	SSU_rRNA_bacteria links to Rfam database...	0.59	0.52	0.66	241	1135913	144	19	105	20	223
CRW_01484	5S_rRNA links to Rfam database...	0.24	0.18	0.33	7	7482	15	2	12	1	32
CRW_01485	5S_rRNA links to Rfam database...	0.19	0.18	0.20	7	7468	28	2	26	0	32
CRW_01487	5S_rRNA links to Rfam database...	0.00	0.00	0.00	0	7477	26	3	23	0	41
CRW_01489	5S_rRNA links to Rfam database...	0.82	0.74	0.91	29	7471	5	0	3	2	10
CRW_01491	5S_rRNA links to Rfam database...	0.62	0.47	0.83	20	8361	5	0	4	1	23
CRW_01492	5S_rRNA links to Rfam database...	0.76	0.74	0.78	31	7586	13	0	9	4	11
CRW_01494	5S_rRNA links to Rfam database...	0.74	0.70	0.78	28	7104	9	0	8	1	12
CRW_01497	5S_rRNA links to Rfam database...	0.56	0.45	0.69	18	7114	10	0	8	2	22
CRW_01498	5S_rRNA links to Rfam database...	0.87	0.81	0.92	35	8090	5	0	3	2	8
CRW_01499	5S_rRNA links to Rfam database...	0.55	0.54	0.56	22	7962	18	3	14	1	19
CRW_01500	5S_rRNA links to Rfam database...	0.86	0.79	0.94	30	7718	5	0	2	3	8
CRW_01501	5S_rRNA links to Rfam database...	0.86	0.84	0.88	38	8472	8	0	5	3	7
CRW_01508	5S_rRNA links to Rfam database...	0.90	0.86	0.95	36	7963	8	0	2	6	6
CRW_01532	5S_rRNA links to Rfam database...	0.79	0.76	0.82	28	7106	12	0	6	6	9
CRW_01533	5S_rRNA links to Rfam database...	0.82	0.78	0.85	29	7106	11	0	5	6	8
CRW_01534	5S_rRNA links to Rfam database...	0.80	0.78	0.83	29	7105	11	0	6	5	8
CRW_01535	5S_rRNA links to Rfam database...	0.84	0.78	0.91	29	7108	7	0	3	4	8
CRW_01536	5S_rRNA links to Rfam database...	0.81	0.73	0.90	27	6991	4	0	3	1	10
CRW_01537	5S_rRNA links to Rfam database...	0.77	0.70	0.84	26	7109	11	0	5	6	11
CRW_01539	5S_rRNA links to Rfam database...	0.83	0.76	0.90	28	7109	9	0	3	6	9
CRW_01540	5S_rRNA links to Rfam database...	0.63	0.59	0.67	22	7107	15	0	11	4	15
CRW_01541	5S_rRNA links to Rfam database...	0.90	0.81	1.00	30	7110	1	0	0	1	7
CRW_01542	5S_rRNA links to Rfam database...	0.87	0.84	0.91	31	7106	7	0	3	4	6
CRW_01544	5S_rRNA links to Rfam database...	0.79	0.76	0.82	28	7106	7	0	6	1	9
CRW_01548	5S_rRNA links to Rfam database...	0.80	0.76	0.85	28	6988	8	0	5	3	9
CRW_01555	5S_rRNA links to Rfam database...	0.80	0.76	0.85	28	9012	11	0	5	6	9
CRW_01556	5S_rRNA links to Rfam database...	0.69	0.68	0.71	25	7105	14	0	10	4	12
CRW_01557	5S_rRNA links to Rfam database...	0.80	0.78	0.83	29	7105	10	0	6	4	8
CRW_01559	5S_rRNA links to Rfam database...	0.79	0.78	0.81	29	7224	14	0	7	7	8
CRW_01562	5S_rRNA links to Rfam database...	0.86	0.81	0.91	30	7107	4	0	3	1	7
CRW_01563	5S_rRNA links to Rfam database...	0.65	0.51	0.83	19	6880	5	1	3	1	18
CRW_01566	5S_rRNA links to Rfam database...	0.75	0.73	0.77	27	7105	8	0	8	0	10
CRW_01568	5S_rRNA links to Rfam database...	0.80	0.78	0.83	29	7105	11	0	6	5	8
CRW_01569	5S_rRNA links to Rfam database...	0.82	0.78	0.85	29	7106	8	0	5	3	8
CRW_01570	5S_rRNA links to Rfam database...	0.84	0.78	0.91	29	7108	10	0	3	7	8
CRW_01572	5S_rRNA links to Rfam database...	0.31	0.24	0.39	9	6998	14	4	10	0	28
CRW_01573	5S_rRNA links to Rfam database...	0.82	0.78	0.85	29	7226	7	0	5	2	8
CRW_01578	5S_rRNA links to Rfam database...	0.84	0.78	0.91	29	7108	7	0	3	4	8
CRW_01580	5S_rRNA links to Rfam database...	0.69	0.59	0.81	22	7113	9	0	5	4	15
CRW_01581	5S_rRNA links to Rfam database...	0.31	0.27	0.37	10	7113	17	0	17	0	27
CRW_01583	5S_rRNA links to Rfam database...	0.80	0.76	0.85	28	7107	8	0	5	3	9
CRW_01584	5S_rRNA links to Rfam database...	0.90	0.89	0.92	33	7104	7	0	3	4	4
CRW_01590	5S_rRNA links to Rfam database...	0.66	0.43	1.00	16	7124	0	0	0	0	21
CRW_01593	5S_rRNA links to Rfam database...	0.82	0.78	0.85	29	7106	10	0	5	5	8
CRW_01595	5S_rRNA links to Rfam database...	0.77	0.73	0.82	27	8482	9	0	6	3	10
CRW_01599	5S_rRNA links to Rfam database...	0.77	0.73	0.82	27	7107	8	0	6	2	10
CRW_01603	5S_rRNA links to Rfam database...	0.84	0.78	0.91	29	7108	6	0	3	3	8
CRW_01605	5S_rRNA links to Rfam database...	0.75	0.70	0.81	26	7108	10	0	6	4	11
CRW_01606	5S_rRNA links to Rfam database...	0.72	0.65	0.80	24	7110	7	0	6	1	13
CRW_01608	5S_rRNA links to Rfam database...	0.52	0.46	0.59	17	8356	12	0	12	0	20
CRW_01616	5S_rRNA links to Rfam database...	0.82	0.78	0.85	29	7106	11	0	5	6	8
CRW_01617	5S_rRNA links to Rfam database...	0.92	0.89	0.94	33	7105	6	0	2	4	4
CRW_01620	5S_rRNA links to Rfam database...	0.89	0.89	0.89	33	6984	5	0	4	1	4
CRW_01621	5S_rRNA links to Rfam database...	0.73	0.70	0.76	26	7106	9	0	8	1	11
CRW_01623	5S_rRNA links to Rfam database...	0.87	0.81	0.94	30	7108	3	0	2	1	7
CRW_01625	5S_rRNA links to Rfam database...	0.82	0.81	0.83	30	7104	9	0	6	3	7
PDB_00012	mir-TAR links to Rfam database...	1.00	1.00	1.00	7	399	3	0	0	3	0
PDB_00070	tRNA links to Rfam database...	0.68	0.67	0.70	16	2827	7	1	6	0	8
PDB_00213	Gammaretro_CES links to Rfam database...	0.94	0.88	1.00	36	5014	0	0	0	0	5
PDB_00229	tRNA links to Rfam database...	0.44	0.43	0.45	10	2753	12	3	9	0	13
PDB_00327	tRNA links to Rfam database...	0.57	0.52	0.63	12	3062	7	0	7	0	11
PDB_00362	tRNA links to Rfam database...	0.95	0.91	1.00	20	2830	1	0	0	1	2
PDB_00402	tRNA links to Rfam database...	0.28	0.30	0.27	7	2749	19	1	18	0	16
PDB_00431	tRNA links to Rfam database...	0.74	0.55	1.00	11	2200	1	0	0	1	9
PDB_00474	tRNA links to Rfam database...	0.96	0.91	1.00	21	2680	0	0	0	0	2
PDB_00553	mir-TAR links to Rfam database...	1.00	1.00	1.00	11	454	0	0	0	0	0
PDB_00571	tRNA links to Rfam database...	0.21	0.20	0.24	5	3300	16	6	10	0	20
PDB_00667	tRNA links to Rfam database...	0.71	0.68	0.75	15	2830	7	4	1	2	7
PDB_00741	Entero_5_CRE links to Rfam database...	0.87	0.76	1.00	13	690	0	0	0	0	4
PDB_00810	s2m links to Rfam database...	0.76	0.59	1.00	10	1071	0	0	0	0	7
PDB_00828	Purine links to Rfam database...	0.88	0.78	1.00	21	2464	0	0	0	0	6
PDB_00829	Purine links to Rfam database...	0.86	0.75	1.00	18	2260	0	0	0	0	6
PDB_00876	HIV_FE links to Rfam database...	0.95	0.90	1.00	18	972	0	0	0	0	2
PDB_01002	tRNA links to Rfam database...	0.95	0.90	1.00	19	2756	2	0	0	2	2
PDB_01020	Purine links to Rfam database...	0.86	0.74	1.00	17	2261	1	0	0	1	6
PDB_01050	UnaL2 links to Rfam database...	0.96	0.92	1.00	12	618	2	0	0	2	1
PDB_01053	tRNA links to Rfam database...	1.00	1.00	1.00	16	1362	0	0	0	0	0
PDB_01073	SAM links to Rfam database...	0.80	0.65	1.00	22	4349	1	0	0	1	12
PDB_01114	TPP links to Rfam database...	0.62	0.52	0.74	14	2831	5	0	5	0	13
PDB_01120	SSU_rRNA_bacteria links to Rfam database...	0.55	0.44	0.70	230	1204799	110	12	87	11	297
PDB_01152	HIV_FS2 links to Rfam database...	0.96	0.93	1.00	13	548	0	0	0	0	1
PDB_01236	ykoK links to Rfam database...	0.62	0.57	0.67	31	11582	18	0	15	3	23
RFA_00389	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00390	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00391	Hammerhead_3 links to Rfam database...	0.93	0.87	1.00	13	1418	2	0	0	2	2
RFA_00396	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	1	0	0	1	1
RFA_00402	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	0	0	0	0	0
RFA_00409	Hammerhead_3 links to Rfam database...	0.77	0.60	1.00	9	1422	1	0	0	1	6
RFA_00416	Hammerhead_3 links to Rfam database...	0.93	0.93	0.93	14	1470	4	0	1	3	1
RFA_00433	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00434	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00436	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00440	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1470	2	0	0	2	0
RFA_00442	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00444	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1525	1	0	0	1	0
RFA_00583	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4935	10	0	0	10	0
RFA_00584	Y_RNA links to Rfam database...	0.87	0.87	0.87	13	2911	14	0	2	12	2
RFA_00585	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4836	2	0	0	2	0
RFA_00586	Y_RNA links to Rfam database...	0.89	0.80	1.00	12	3904	8	0	0	8	3
RFA_00587	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4836	8	0	0	8	0
RFA_00588	Y_RNA links to Rfam database...	0.93	0.87	1.00	13	4547	7	0	0	7	2
RFA_00589	Y_RNA links to Rfam database...	0.93	0.87	1.00	13	4358	17	0	0	17	2
RFA_00594	Y_RNA links to Rfam database...	0.93	0.87	1.00	13	2762	10	0	0	10	2
RFA_00596	Y_RNA links to Rfam database...	0.00	0.00	0.00	0	5985	19	4	6	9	15
RFA_00599	Telomerase-vert links to Rfam database...	0.69	0.68	0.70	75	101368	52	8	24	20	36
RFA_00601	Telomerase-vert links to Rfam database...	0.27	0.21	0.35	24	99167	52	9	35	8	90
RFA_00658	Hammerhead_1 links to Rfam database...	0.59	0.50	0.70	7	1118	5	0	3	2	7
RFA_00664	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	980	11	0	10	1	14
RFA_00667	Hammerhead_1 links to Rfam database...	0.22	0.21	0.25	3	978	10	1	8	1	11
RFA_00668	Hammerhead_1 links to Rfam database...	0.41	0.43	0.40	6	975	9	0	9	0	8
RFA_00672	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	896	7	0	7	0	13
RFA_00673	Hammerhead_1 links to Rfam database...	0.42	0.36	0.50	5	1118	6	0	5	1	9
RFA_00674	Hammerhead_1 links to Rfam database...	0.66	0.64	0.69	9	1115	5	0	4	1	5
RFA_00675	Hammerhead_1 links to Rfam database...	0.29	0.29	0.31	4	977	9	1	8	0	10
RFA_00677	Hammerhead_1 links to Rfam database...	0.59	0.57	0.62	8	977	6	0	5	1	6
RFA_00678	Hammerhead_1 links to Rfam database...	0.53	0.29	1.00	4	942	0	0	0	0	10
RFA_00680	Hammerhead_1 links to Rfam database...	0.74	0.71	0.77	10	1115	6	0	3	3	4
RFA_00704	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	981	9	0	9	0	14
RFA_00707	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	1028	7	1	6	0	14
RFA_00715	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	937	9	0	9	0	14
RFA_00717	Hammerhead_1 links to Rfam database...	0.72	0.64	0.82	9	892	2	0	2	0	5
RFA_00730	s2m links to Rfam database...	0.69	0.67	0.73	8	892	4	1	2	1	4
RFA_00731	s2m links to Rfam database...	0.66	0.67	0.67	8	891	5	1	3	1	4
RFA_00733	s2m links to Rfam database...	0.66	0.67	0.67	8	891	5	1	3	1	4
RFA_00734	s2m links to Rfam database...	0.61	0.67	0.57	8	889	7	1	5	1	4
RFA_00736	s2m links to Rfam database...	0.66	0.67	0.67	8	891	5	1	3	1	4
RFA_00737	s2m links to Rfam database...	0.96	0.92	1.00	11	892	1	0	0	1	1
RFA_00745	s2m links to Rfam database...	0.91	0.83	1.00	10	936	1	0	0	1	2
RFA_00749	s2m links to Rfam database...	0.66	0.67	0.67	8	891	5	1	3	1	4
RFA_00758	s2m links to Rfam database...	0.76	0.58	1.00	7	896	0	0	0	0	5
RFA_00762	s2m links to Rfam database...	0.64	0.67	0.62	8	890	5	1	4	0	4
RFA_00763	s2m links to Rfam database...	0.91	0.83	1.00	10	893	0	0	0	0	2
RFA_00764	s2m links to Rfam database...	0.66	0.67	0.67	8	891	5	1	3	1	4
RFA_00765	s2m links to Rfam database...	1.00	1.00	1.00	12	891	1	0	0	1	0
RFA_00786	Gammaretro_CES links to Rfam database...	0.27	0.22	0.33	7	5029	14	1	13	0	25
RFA_00791	Gammaretro_CES links to Rfam database...	0.58	0.50	0.67	16	5127	8	1	7	0	16
RFA_00792	Gammaretro_CES links to Rfam database...	0.95	0.94	0.97	30	5019	2	0	1	1	2
RFA_00801	Gammaretro_CES links to Rfam database...	0.79	0.75	0.83	24	5021	6	0	5	1	8
SPR_00007	tRNA links to Rfam database...	0.87	0.76	1.00	16	2834	0	0	0	0	5
SPR_00009	tRNA links to Rfam database...	-0.01	0.00	0.00	0	2833	17	0	17	0	20
SPR_00010	tRNA links to Rfam database...	0.65	0.57	0.75	12	2834	4	0	4	0	9
SPR_00012	tRNA links to Rfam database...	0.26	0.25	0.28	5	2832	13	0	13	0	15
SPR_00013	tRNA links to Rfam database...	0.84	0.70	1.00	14	2836	0	0	0	0	6
SPR_00016	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00017	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00025	tRNA links to Rfam database...	0.39	0.35	0.44	7	2910	9	1	8	0	13
SPR_00026	tRNA links to Rfam database...	0.60	0.57	0.63	12	2907	7	0	7	0	9
SPR_00027	tRNA links to Rfam database...	0.58	0.33	1.00	7	2919	0	0	0	0	14
SPR_00036	tRNA links to Rfam database...	0.84	0.80	0.89	16	2757	3	0	2	1	4
SPR_00045	tRNA links to Rfam database...	0.95	0.95	0.95	21	2828	1	0	1	0	1
SPR_00064	tRNA links to Rfam database...	0.57	0.57	0.57	12	2829	9	2	7	0	9
SPR_00065	tRNA links to Rfam database...	0.51	0.52	0.50	11	2828	11	3	8	0	10
SPR_00066	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00068	tRNA links to Rfam database...	0.70	0.71	0.68	15	2828	7	3	4	0	6
SPR_00070	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	1	0	0	1	0
SPR_00074	tRNA links to Rfam database...	0.53	0.55	0.52	11	2829	11	3	7	1	9
SPR_00079	tRNA links to Rfam database...	0.92	0.84	1.00	16	2469	2	0	0	2	3
SPR_00086	tRNA links to Rfam database...	0.31	0.29	0.35	6	2833	11	2	9	0	15
SPR_00087	tRNA links to Rfam database...	0.45	0.20	1.00	4	2846	0	0	0	0	16
SPR_00088	tRNA links to Rfam database...	0.45	0.20	1.00	4	2846	0	0	0	0	16
SPR_00089	tRNA links to Rfam database...	0.47	0.35	0.64	7	2839	4	0	4	0	13
SPR_00090	tRNA links to Rfam database...	0.23	0.20	0.29	4	2836	10	2	8	0	16
SPR_00091	tRNA links to Rfam database...	0.63	0.40	1.00	8	2842	0	0	0	0	12
SPR_00095	tRNA links to Rfam database...	0.54	0.57	0.52	12	2827	11	4	7	0	9
SPR_00111	tRNA links to Rfam database...	0.61	0.57	0.67	12	2683	6	1	5	0	9
SPR_00112	tRNA links to Rfam database...	0.78	0.76	0.80	16	2681	6	3	1	2	5
SPR_00115	tRNA links to Rfam database...	0.90	0.81	1.00	17	2684	0	0	0	0	4
SPR_00117	tRNA links to Rfam database...	0.68	0.71	0.65	15	2827	8	1	7	0	6
SPR_00139	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	1	0	0	1	0
SPR_00153	tRNA links to Rfam database...	0.98	0.95	1.00	20	2906	0	0	0	0	1
SPR_00155	tRNA links to Rfam database...	0.52	0.52	0.52	11	2905	10	3	7	0	10
SPR_00156	tRNA links to Rfam database...	0.48	0.52	0.44	11	2901	14	5	9	0	10
SPR_00176	tRNA links to Rfam database...	0.50	0.55	0.46	11	2826	13	2	11	0	9
SPR_00177	tRNA links to Rfam database...	0.53	0.52	0.55	11	2830	9	0	9	0	10
SPR_00178	tRNA links to Rfam database...	0.84	0.71	1.00	15	2835	0	0	0	0	6
SPR_00191	tRNA links to Rfam database...	0.52	0.52	0.52	11	2829	10	2	8	0	10
SPR_00200	tRNA links to Rfam database...	0.71	0.71	0.71	15	2829	6	3	3	0	6
SPR_00224	tRNA links to Rfam database...	0.47	0.50	0.45	10	3719	17	5	7	5	10
SPR_00271	tRNA links to Rfam database...	0.51	0.57	0.46	12	2824	14	3	11	0	9
SPR_00273	tRNA links to Rfam database...	0.30	0.33	0.28	7	2825	18	2	16	0	14
SPR_00276	tRNA links to Rfam database...	0.98	0.95	1.00	20	2906	0	0	0	0	1
SPR_00277	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00294	tRNA links to Rfam database...	0.57	0.57	0.57	12	2829	9	2	7	0	9
SPR_00295	tRNA links to Rfam database...	0.98	0.95	1.00	20	2755	1	0	0	1	1
SPR_00314	tRNA links to Rfam database...	0.71	0.76	0.67	16	2902	11	0	8	3	5
SPR_00315	tRNA links to Rfam database...	0.90	0.81	1.00	17	2909	2	0	0	2	4
SPR_00317	tRNA links to Rfam database...	0.51	0.55	0.48	11	2903	12	6	6	0	9
SPR_00318	tRNA links to Rfam database...	0.98	0.95	1.00	20	2906	4	0	0	4	1
SPR_00321	tRNA links to Rfam database...	0.79	0.71	0.88	15	2986	2	1	1	0	6
SPR_00333	tRNA links to Rfam database...	0.45	0.48	0.43	10	2752	13	5	8	0	11
SPR_00352	tRNA links to Rfam database...	0.76	0.67	0.88	14	2910	2	1	1	0	7
SPR_00353	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	1	0	0	1	0
SPR_00357	tRNA links to Rfam database...	0.98	0.95	1.00	20	2906	0	0	0	0	1
SPR_00358	tRNA links to Rfam database...	0.54	0.60	0.50	12	2902	13	3	9	1	8
SPR_00370	tRNA links to Rfam database...	0.23	0.24	0.24	5	2754	16	3	13	0	16
SPR_00386	tRNA links to Rfam database...	0.40	0.35	0.47	7	4171	11	1	7	3	13
SPR_00414	tRNA links to Rfam database...	0.30	0.33	0.28	7	3545	22	6	12	4	14
SPR_00415	tRNA links to Rfam database...	0.38	0.33	0.44	7	3554	13	3	6	4	14
SPR_00417	tRNA links to Rfam database...	0.30	0.32	0.29	7	3546	21	6	11	4	15
SPR_00418	tRNA links to Rfam database...	0.30	0.32	0.29	7	3546	21	6	11	4	15
SPR_00434	tRNA links to Rfam database...	0.72	0.52	1.00	11	2839	0	0	0	0	10
SPR_00435	tRNA links to Rfam database...	0.73	0.71	0.75	15	2830	5	0	5	0	6
SPR_00436	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	2	0	0	2	1
SPR_00437	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	2	0	0	2	0
SPR_00438	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	0	0	0	0	0
SPR_00452	tRNA links to Rfam database...	0.53	0.57	0.50	12	2826	12	2	10	0	9
SPR_00455	tRNA links to Rfam database...	0.28	0.29	0.29	6	2829	15	5	10	0	15
SPR_00456	tRNA links to Rfam database...	0.54	0.57	0.52	12	2827	12	2	9	1	9
SPR_00476	tRNA links to Rfam database...	0.46	0.52	0.41	11	2748	17	3	13	1	10
SPR_00479	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00482	tRNA links to Rfam database...	0.64	0.52	0.79	11	2687	3	0	3	0	10
SPR_00483	tRNA links to Rfam database...	0.87	0.76	1.00	16	2834	1	0	0	1	5
SPR_00487	tRNA links to Rfam database...	0.60	0.55	0.67	12	2683	6	0	6	0	10
SPR_00493	tRNA links to Rfam database...	0.82	0.68	1.00	15	2760	0	0	0	0	7
SPR_00496	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	0	0	0	0	0
SPR_00497	tRNA links to Rfam database...	0.46	0.52	0.41	11	2748	17	3	13	1	10
SPR_00502	tRNA links to Rfam database...	0.70	0.57	0.86	12	2912	2	0	2	0	9
SPR_00504	tRNA links to Rfam database...	0.45	0.50	0.42	10	2826	14	5	9	0	10
SPR_00505	tRNA links to Rfam database...	0.89	0.80	1.00	16	2910	0	0	0	0	4
SPR_00506	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00509	tRNA links to Rfam database...	0.74	0.55	1.00	11	2915	0	0	0	0	9
SPR_00512	tRNA links to Rfam database...	0.97	0.95	1.00	19	2907	0	0	0	0	1
SPR_00513	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00518	tRNA links to Rfam database...	0.63	0.55	0.73	11	2911	4	0	4	0	9
SPR_00548	tRNA links to Rfam database...	0.53	0.57	0.50	12	3379	12	0	12	0	9
SPR_00557	tRNA links to Rfam database...	0.40	0.43	0.39	9	2827	15	1	13	1	12
SPR_00561	tRNA links to Rfam database...	0.40	0.43	0.38	9	2826	15	1	14	0	12
SPR_00590	tRNA links to Rfam database...	0.42	0.35	0.50	7	2989	7	2	5	0	13
SPR_00593	tRNA links to Rfam database...	0.76	0.63	0.92	12	2762	2	0	1	1	7
SPR_00595	tRNA links to Rfam database...	0.84	0.71	1.00	15	2760	0	0	0	0	6
SPR_00598	tRNA links to Rfam database...	0.54	0.57	0.52	12	2980	12	2	9	1	9
SPR_00610	tRNA links to Rfam database...	0.85	0.76	0.94	16	2539	2	0	1	1	5
SPR_00620	tRNA links to Rfam database...	0.57	0.57	0.57	12	2982	10	5	4	1	9
SPR_00721	tRNA links to Rfam database...	0.49	0.52	0.46	11	2902	13	3	10	0	10
SPR_00722	tRNA links to Rfam database...	0.87	0.75	1.00	15	2911	0	0	0	0	5
SPR_00758	tRNA links to Rfam database...	0.38	0.33	0.44	7	2987	9	2	7	0	14
SPR_00760	tRNA links to Rfam database...	0.77	0.71	0.83	15	3552	5	0	3	2	6
SPR_00777	tRNA links to Rfam database...	0.51	0.55	0.48	11	2605	12	5	7	0	9
SPR_00867	tRNA links to Rfam database...	0.52	0.57	0.48	12	2901	13	2	11	0	9
SPR_00868	tRNA links to Rfam database...	0.58	0.57	0.60	12	2906	9	0	8	1	9
SPR_00943	tRNA links to Rfam database...	0.82	0.80	0.84	16	2537	3	0	3	0	4
SPR_00957	tRNA links to Rfam database...	0.78	0.76	0.80	16	2983	5	0	4	1	5
SPR_01040	tRNA links to Rfam database...	0.83	0.81	0.85	17	2755	4	0	3	1	4
SPR_01088	tRNA links to Rfam database...	0.52	0.52	0.52	11	2905	12	2	8	2	10
SPR_01095	tRNA links to Rfam database...	0.76	0.76	0.76	16	2829	6	0	5	1	5
SPR_01106	tRNA links to Rfam database...	0.60	0.52	0.69	11	2540	5	2	3	0	10
SPR_01117	tRNA links to Rfam database...	0.30	0.33	0.28	7	2978	18	2	16	0	14
SPR_01157	tRNA links to Rfam database...	0.54	0.57	0.52	12	2752	12	0	11	1	9
SRP_00006	Metazoa_SRP links to Rfam database...	0.86	0.84	0.88	85	45656	15	3	9	3	16
SRP_00008	Bacteria_small_SRP links to Rfam database...	0.70	0.72	0.69	18	2900	9	0	8	1	7
SRP_00011	Plant_SRP links to Rfam database...	0.50	0.42	0.60	44	46287	30	0	29	1	60
SRP_00015	Plant_SRP links to Rfam database...	0.82	0.72	0.93	71	46284	11	0	5	6	28
SRP_00020	Bacteria_small_SRP links to Rfam database...	0.86	0.88	0.85	29	5531	5	1	4	0	4
SRP_00024	Bacteria_large_SRP links to Rfam database...	0.80	0.77	0.83	67	37594	14	4	10	0	20
SRP_00026	Bacteria_large_SRP links to Rfam database...	0.67	0.67	0.66	59	36767	38	2	28	8	29
SRP_00027	Bacteria_large_SRP links to Rfam database...	0.65	0.59	0.73	51	37058	19	3	16	0	36
SRP_00030	Bacteria_large_SRP links to Rfam database...	0.76	0.77	0.76	68	36766	24	4	18	2	20
SRP_00031	Bacteria_large_SRP links to Rfam database...	0.72	0.72	0.73	64	36227	25	2	22	1	25
SRP_00037	Bacteria_large_SRP links to Rfam database...	0.62	0.52	0.74	45	36524	16	1	15	0	42
SRP_00038	Bacteria_small_SRP links to Rfam database...	0.48	0.39	0.59	13	5028	9	0	9	0	20
SRP_00042	Bacteria_small_SRP links to Rfam database...	0.47	0.48	0.46	12	3979	16	1	13	2	13
SRP_00044	Bacteria_small_SRP links to Rfam database...	0.79	0.75	0.83	24	6076	6	1	4	1	8
SRP_00050	Metazoa_SRP links to Rfam database...	0.96	0.93	0.99	92	44757	4	0	1	3	7
SRP_00051	Bacteria_small_SRP links to Rfam database...	0.51	0.40	0.67	12	5442	8	0	6	2	18
SRP_00054	Bacteria_small_SRP links to Rfam database...	0.46	0.44	0.48	14	5536	15	0	15	0	18
SRP_00057	Bacteria_small_SRP links to Rfam database...	0.69	0.69	0.71	24	6294	11	2	8	1	11
SRP_00058	Bacteria_small_SRP links to Rfam database...	0.90	0.91	0.89	31	5743	8	1	3	4	3
SRP_00066	Metazoa_SRP links to Rfam database...	0.10	0.10	0.11	10	45363	78	8	70	0	90
SRP_00072	Bacteria_small_SRP links to Rfam database...	0.34	0.31	0.38	9	6304	16	1	14	1	20
SRP_00074	Bacteria_small_SRP links to Rfam database...	0.19	0.17	0.21	5	6531	23	2	17	4	24
SRP_00075	Bacteria_small_SRP links to Rfam database...	0.84	0.79	0.90	27	5535	5	0	3	2	7
SRP_00077	Bacteria_small_SRP links to Rfam database...	0.20	0.22	0.20	8	6630	32	4	28	0	29
SRP_00084	Bacteria_small_SRP links to Rfam database...	0.85	0.85	0.85	29	5426	5	1	4	0	5
SRP_00086	Metazoa_SRP links to Rfam database...	0.95	0.94	0.97	94	44156	6	0	3	3	6
SRP_00088	Bacteria_large_SRP links to Rfam database...	0.63	0.64	0.63	57	34100	34	3	31	0	32
SRP_00089	Bacteria_large_SRP links to Rfam database...	0.84	0.81	0.88	73	35695	10	1	9	0	17
SRP_00090	Bacteria_large_SRP links to Rfam database...	0.70	0.64	0.75	58	35434	21	1	18	2	32
SRP_00094	Bacteria_small_SRP links to Rfam database...	0.76	0.75	0.78	18	4072	5	1	4	0	6
SRP_00095	Bacteria_small_SRP links to Rfam database...	0.39	0.28	0.54	7	3992	6	1	5	0	18
SRP_00098	Bacteria_small_SRP links to Rfam database...	0.64	0.62	0.66	23	6406	13	1	11	1	14
SRP_00102	Metazoa_SRP links to Rfam database...	0.86	0.84	0.88	85	44454	14	1	11	2	16
SRP_00103	Metazoa_SRP links to Rfam database...	0.91	0.86	0.97	88	45360	3	0	3	0	14
SRP_00105	Bacteria_small_SRP links to Rfam database...	0.41	0.38	0.45	13	5536	16	3	13	0	21
SRP_00107	Bacteria_small_SRP links to Rfam database...	0.14	0.16	0.13	3	3631	23	6	15	2	16
SRP_00121	Bacteria_small_SRP links to Rfam database...	0.80	0.80	0.80	20	4253	6	0	5	1	5
SRP_00128	Bacteria_small_SRP links to Rfam database...	0.76	0.81	0.73	29	6746	12	1	10	1	7
SRP_00134	Bacteria_large_SRP links to Rfam database...	0.52	0.55	0.50	16	5963	21	3	13	5	13
SRP_00141	Bacteria_small_SRP links to Rfam database...	0.91	0.90	0.93	37	6288	4	1	2	1	4
SRP_00152	Plant_SRP links to Rfam database...	0.67	0.63	0.71	65	45661	28	1	26	1	38
SRP_00161	Bacteria_small_SRP links to Rfam database...	0.86	0.86	0.86	19	2828	3	0	3	0	3
SRP_00163	Bacteria_small_SRP links to Rfam database...	0.76	0.81	0.72	21	3457	8	2	6	0	5
SRP_00164	Bacteria_small_SRP links to Rfam database...	0.93	0.94	0.92	33	6867	4	1	2	1	2
SRP_00170	Bacteria_small_SRP links to Rfam database...	0.50	0.48	0.52	12	4072	12	0	11	1	13
SRP_00171	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	45353	98	15	83	0	88
SRP_00173	Bacteria_large_SRP links to Rfam database...	0.72	0.70	0.73	63	38140	26	1	22	3	27
SRP_00174	Bacteria_large_SRP links to Rfam database...	0.76	0.76	0.77	65	38697	25	4	15	6	21
SRP_00178	Plant_SRP links to Rfam database...	0.82	0.75	0.90	77	45667	11	1	8	2	25
SRP_00179	Plant_SRP links to Rfam database...	0.87	0.80	0.94	84	45967	9	1	4	4	21
SRP_00181	Plant_SRP links to Rfam database...	0.33	0.29	0.37	30	45974	52	1	51	0	72
SRP_00182	Plant_SRP links to Rfam database...	0.73	0.70	0.76	71	45963	24	3	19	2	30
SRP_00184	Plant_SRP links to Rfam database...	0.71	0.58	0.88	58	45990	12	0	8	4	42
SRP_00188	Plant_SRP links to Rfam database...	0.20	0.18	0.23	14	31064	47	4	43	0	65
SRP_00194	Bacteria_small_SRP links to Rfam database...	0.77	0.81	0.74	17	3217	6	0	6	0	4
SRP_00200	Bacteria_small_SRP links to Rfam database...	0.82	0.83	0.81	30	6866	8	1	6	1	6
SRP_00209	Bacteria_small_SRP links to Rfam database...	0.58	0.59	0.57	16	4628	13	0	12	1	11
SRP_00213	Bacteria_small_SRP links to Rfam database...	0.58	0.40	0.83	10	4174	2	1	1	0	15
SRP_00215	Bacteria_small_SRP links to Rfam database...	0.82	0.80	0.83	20	3216	4	0	4	0	5
SRP_00228	Metazoa_SRP links to Rfam database...	0.96	0.94	0.98	89	45360	10	0	2	8	6
SRP_00231	Bacteria_small_SRP links to Rfam database...	0.89	0.88	0.91	30	5427	3	1	2	0	4
SRP_00233	Bacteria_small_SRP links to Rfam database...	0.94	0.88	1.00	29	5122	0	0	0	0	4
SRP_00234	Bacteria_large_SRP links to Rfam database...	0.78	0.76	0.80	65	36234	21	1	15	5	21
SRP_00243	Bacteria_small_SRP links to Rfam database...	0.97	0.94	1.00	29	5122	1	0	0	1	2
SRP_00244	Bacteria_small_SRP links to Rfam database...	0.76	0.64	0.89	25	6875	3	1	2	0	14
SRP_00250	Bacteria_small_SRP links to Rfam database...	0.74	0.75	0.73	27	6749	13	1	9	3	9
SRP_00251	Bacteria_small_SRP links to Rfam database...	0.70	0.72	0.68	26	6983	12	1	11	0	10
SRP_00266	Bacteria_small_SRP links to Rfam database...	0.65	0.55	0.76	16	4635	6	0	5	1	13
SRP_00268	Bacteria_small_SRP links to Rfam database...	0.62	0.48	0.81	13	4170	3	1	2	0	14
SRP_00269	Bacteria_small_SRP links to Rfam database...	0.60	0.61	0.61	20	5017	13	3	10	0	13
SRP_00270	Bacteria_small_SRP links to Rfam database...	0.43	0.45	0.41	14	4622	20	2	18	0	17
SRP_00271	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	3218	22	3	19	0	24
SRP_00273	Bacteria_small_SRP links to Rfam database...	0.90	0.90	0.90	36	6746	6	1	3	2	4
SRP_00274	Bacteria_small_SRP links to Rfam database...	0.93	0.95	0.92	36	6864	4	1	2	1	2
SRP_00295	Bacteria_small_SRP links to Rfam database...	0.93	0.92	0.95	35	6866	4	1	1	2	3
SRP_00303	Bacteria_small_SRP links to Rfam database...	0.81	0.84	0.77	27	6635	8	1	7	0	5
SRP_00308	Bacteria_large_SRP links to Rfam database...	0.62	0.59	0.65	52	36235	30	8	20	2	36
SRP_00310	Bacteria_small_SRP links to Rfam database...	0.82	0.78	0.86	18	2905	4	0	3	1	5
SRP_00312	Bacteria_small_SRP links to Rfam database...	0.41	0.37	0.45	10	4164	12	1	11	0	17
SRP_00315	Bacteria_small_SRP links to Rfam database...	0.79	0.74	0.85	17	2906	3	0	3	0	6
SRP_00317	Metazoa_SRP links to Rfam database...	0.94	0.89	0.99	87	45062	9	0	1	8	11
SRP_00318	Bacteria_small_SRP links to Rfam database...	0.84	0.83	0.86	19	2981	3	0	3	0	4
SRP_00325	Bacteria_small_SRP links to Rfam database...	1.00	1.00	1.00	33	4338	0	0	0	0	0
SRP_00326	Bacteria_small_SRP links to Rfam database...	0.55	0.55	0.55	17	5019	14	3	11	0	14
SRP_00333	Bacteria_small_SRP links to Rfam database...	0.86	0.85	0.88	29	5118	4	0	4	0	5
SRP_00335	Bacteria_large_SRP links to Rfam database...	0.32	0.44	0.24	17	35173	76	26	29	21	22
SRP_00337	Bacteria_large_SRP links to Rfam database...	0.70	0.68	0.73	62	35426	25	2	21	2	29
SRP_00338	Bacteria_small_SRP links to Rfam database...	0.94	0.94	0.94	34	5424	2	0	2	0	2
SRP_00341	Bacteria_small_SRP links to Rfam database...	0.57	0.52	0.64	16	4728	9	0	9	0	15
SRP_00342	Bacteria_small_SRP links to Rfam database...	0.59	0.60	0.58	15	3979	16	1	10	5	10
SRP_00347	Metazoa_SRP links to Rfam database...	0.83	0.81	0.84	78	46572	20	4	11	5	18
SRP_00350	Bacteria_small_SRP links to Rfam database...	0.38	0.33	0.45	9	3896	11	1	10	0	18
SRP_00357	Bacteria_small_SRP links to Rfam database...	0.93	0.92	0.94	33	5321	3	1	1	1	3
SRP_00358	Bacteria_small_SRP links to Rfam database...	0.93	0.91	0.94	32	6294	3	1	1	1	3
SRP_00367	Bacteria_small_SRP links to Rfam database...	0.94	0.94	0.94	33	6751	2	1	1	0	2
SRP_00368	Metazoa_SRP links to Rfam database...	0.95	0.94	0.97	92	43861	9	0	3	6	6
SRP_00369	Bacteria_small_SRP links to Rfam database...	0.91	0.89	0.94	31	5745	2	1	1	0	4
SRP_00383	Bacteria_small_SRP links to Rfam database...	0.22	0.21	0.24	5	3219	16	3	13	0	19
TMR_00017	tmRNA links to Rfam database...	0.30	0.24	0.39	24	67100	43	5	32	6	78
TMR_00018	tmRNA links to Rfam database...	0.22	0.21	0.24	19	64542	63	15	44	4	73
TMR_00038	tmRNA links to Rfam database...	0.22	0.20	0.25	22	71166	68	9	56	3	88
TMR_00042	tmRNA links to Rfam database...	0.20	0.18	0.23	18	62757	63	8	52	3	80
TMR_00046	tmRNA links to Rfam database...	0.61	0.56	0.66	54	62753	34	4	24	6	42
TMR_00048	tmRNA links to Rfam database...	0.39	0.34	0.46	32	64911	46	2	35	9	63
TMR_00080	tmRNA links to Rfam database...	0.54	0.40	0.75	38	70449	13	3	10	0	58
TMR_00082	tmRNA links to Rfam database...	0.48	0.43	0.53	41	67819	38	11	25	2	55
TMR_00123	tmRNA links to Rfam database...	0.32	0.27	0.39	27	66360	48	7	36	5	74
TMR_00137	tmRNA links to Rfam database...	0.17	0.17	0.18	15	60992	78	7	61	10	74
TMR_00142	tmRNA links to Rfam database...	0.42	0.35	0.50	36	70804	43	5	31	7	66
TMR_00207	tmRNA links to Rfam database...	0.37	0.35	0.38	36	72296	65	3	55	7	67
TMR_00257	tmRNA links to Rfam database...	0.08	0.07	0.09	7	67080	78	7	67	4	91
TMR_00271	tmRNA links to Rfam database...	0.54	0.48	0.60	44	64188	33	6	23	4	47
TMR_00332	tmRNA links to Rfam database...	0.35	0.30	0.42	30	67089	47	8	34	5	69
TMR_00366	tmRNA links to Rfam database...	0.33	0.31	0.36	31	67809	68	11	45	12	69
TMR_00378	tmRNA links to Rfam database...	0.29	0.25	0.34	24	67826	54	7	39	8	73
TMR_00399	tmRNA links to Rfam database...	0.35	0.31	0.41	29	64909	43	16	26	1	65
TMR_00404	tmRNA links to Rfam database...	0.41	0.37	0.45	34	67453	52	15	26	11	58
TMR_00427	tmRNA links to Rfam database...	0.38	0.25	0.57	24	67486	24	0	18	6	73
TMR_00443	tmRNA links to Rfam database...	0.41	0.31	0.55	32	67103	35	5	21	9	72
TMR_00451	tmRNA links to Rfam database...	0.18	0.17	0.19	15	63465	66	13	53	0	74
TMR_00458	tmRNA links to Rfam database...	0.25	0.16	0.38	15	63507	32	4	20	8	78
TMR_00469	tmRNA links to Rfam database...	0.41	0.42	0.40	42	64516	62	11	51	0	58
TMR_00472	tmRNA links to Rfam database...	0.38	0.33	0.43	32	64546	45	12	30	3	65
TMR_00519	tmRNA links to Rfam database...	0.14	0.15	0.14	14	63089	97	15	72	10	81
TMR_00520	tmRNA links to Rfam database...	0.51	0.41	0.62	41	63124	35	7	18	10	58
TMR_00522	tmRNA links to Rfam database...	0.48	0.38	0.62	37	63130	32	9	14	9	60
TMR_00528	tmRNA links to Rfam database...	0.32	0.15	0.65	15	63167	18	3	5	10	82
TMR_00540	tmRNA links to Rfam database...	0.48	0.35	0.68	36	73483	17	2	15	0	68
TMR_00568	tmRNA links to Rfam database...	0.52	0.35	0.78	35	60681	18	0	10	8	64
TMR_00571	tmRNA links to Rfam database...	0.50	0.33	0.75	33	60682	18	2	9	7	66
TMR_00580	tmRNA links to Rfam database...	0.38	0.25	0.57	25	60682	24	3	16	5	75
TMR_00584	tmRNA links to Rfam database...	0.58	0.55	0.62	53	60990	38	7	25	6	44
TMR_00586	tmRNA links to Rfam database...	0.28	0.25	0.32	24	61001	54	12	38	4	73
TMR_00616	tmRNA links to Rfam database...	0.40	0.38	0.41	38	67068	60	10	45	5	61
TMR_00699	tmRNA links to Rfam database...	0.31	0.29	0.34	30	67072	61	6	53	2	72
TMR_00702	tmRNA links to Rfam database...	0.13	0.11	0.15	11	67090	64	6	54	4	89
TMR_00703	tmRNA links to Rfam database...	0.37	0.31	0.44	31	67457	44	7	33	4	68

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Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.

Table of contents:

Overview

Performance plots

Performance of PPfold(20) - scored higher in this pairwise comparison

1. Total counts & total scores for PPfold(20)

2. Individual counts for PPfold(20) [ download as .csv ]

Performance of Sfold - scored lower in this pairwise comparison

1. Total counts & total scores for Sfold

2. Individual counts for Sfold [ download as .csv ]