CompaRNA - on-line benchmarks of RNA structure prediction methods

Laboratory of Structural Bioinformatics @ Adam Mickiewicz University in Poznan

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Overview

Metric	Pknots		Alterna
MCC	0.610	>	0.552
Average MCC ± 95% Confidence Intervals	0.617 ± 0.027	>	0.579 ± 0.025
Sensitivity	0.599	>	0.547
Positive Predictive Value	0.629	>	0.566
Total TP	7398	>	6749
Total TN	1334850	>	1334686
Total FP	4997	<	5874
Total FP CONTRA	625	<	848
Total FP INCONS	3743	<	4333
Total FP COMP	629	<	693
Total FN	4950	<	5599
P-value	3.56938820447e-08

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Performance plots

Comparison of performance of Pknots and Alterna. Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data (individual counts for Pknots and Alterna).
Average Matthews Correlation Coefficients (MCC) with 95% confidence intervals (CIs) were plotted for different RNA families, for which at least 3 members were present in the benchmarking dataset. 'n' denotes the number of MCCs used to calculate the average and CI. See tables below for raw data (individual counts for Pknots and Alterna).
Comparison of average Matthews Correlation Coefficients (MCCs) for Pknots and Alterna. The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data (individual counts for Pknots and Alterna).

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Performance of Pknots - scored higher in this pairwise comparison

1. Total counts & total scores for Pknots

Total Base Pair Counts
Total TP	7398
Total TN	1334850
Total FP	4997
Total FP CONTRA	625
Total FP INCONS	3743
Total FP COMP	629
Total FN	4950

Total Scores
MCC	0.610
Average MCC ± 95% Confidence Intervals	0.617 ± 0.027
Sensitivity	0.599
Positive Predictive Value	0.629
Nr of predictions	693

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2. Individual counts for Pknots [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
NDB_00014	-	0.89	0.80	1.00	8	182	0	0	0	0	2
NDB_00015	-	0.38	0.40	0.40	4	266	6	0	6	0	6
NDB_00016	-	0.91	0.83	1.00	10	266	0	0	0	0	2
NDB_00047	-	0.91	0.83	1.00	10	266	0	0	0	0	2
NDB_00048	-	-0.02	0.00	0.00	0	1514	26	0	26	0	28
NDB_00049	-	0.92	0.85	1.00	11	314	0	0	0	0	2
NDB_00051	tRNA links to Rfam database...	0.39	0.38	0.41	9	2753	13	1	12	0	15
PDB_00001	-	-0.03	0.00	0.00	0	270	6	0	6	0	12
PDB_00002	-	0.87	0.88	0.88	7	202	1	0	1	0	1
PDB_00003	-	0.81	0.67	1.00	8	343	0	0	0	0	4
PDB_00004	-	0.56	0.47	0.69	9	807	4	0	4	0	10
PDB_00005	Tymo_tRNA-like links to Rfam database...	1.00	1.00	1.00	14	932	0	0	0	0	0
PDB_00006	-	1.00	1.00	1.00	14	689	0	0	0	0	0
PDB_00011	-	-0.04	0.00	0.00	0	268	8	0	8	0	12
PDB_00012	mir-TAR links to Rfam database...	1.00	1.00	1.00	7	399	3	0	0	3	0
PDB_00013	-	1.00	1.00	1.00	10	396	1	0	0	1	0
PDB_00017	-	0.70	0.60	0.82	9	692	2	0	2	0	6
PDB_00018	-	0.68	0.55	0.85	11	1022	2	2	0	0	9
PDB_00019	-	0.48	0.50	0.50	4	245	4	1	3	0	4
PDB_00020	-	0.77	0.65	0.93	13	766	1	0	1	0	7
PDB_00021	-	1.00	1.00	1.00	8	182	0	0	0	0	0
PDB_00022	-	0.94	0.89	1.00	8	245	0	0	0	0	1
PDB_00032	-	0.14	0.13	0.17	2	891	10	1	9	0	13
PDB_00034	-	-0.02	0.00	0.00	0	372	6	0	6	0	12
PDB_00035	-	0.94	0.89	1.00	8	202	0	0	0	0	1
PDB_00036	-	-0.01	0.00	0.00	0	3470	22	0	16	6	27
PDB_00040	-	0.83	0.70	1.00	7	269	0	0	0	0	3
PDB_00041	-	1.00	1.00	1.00	12	618	0	0	0	0	0
PDB_00043	-	0.87	0.77	1.00	10	425	0	0	0	0	3
PDB_00048	-	0.82	0.78	0.88	7	292	2	0	1	1	2
PDB_00049	-	0.83	0.70	1.00	7	224	0	0	0	0	3
PDB_00053	-	1.00	1.00	1.00	11	424	0	0	0	0	0
PDB_00054	-	-0.04	0.00	0.00	0	184	6	0	6	0	10
PDB_00056	-	0.93	0.88	1.00	14	616	0	0	0	0	2
PDB_00057	-	1.00	1.00	1.00	10	341	1	0	0	1	0
PDB_00065	-	-0.02	0.00	0.00	0	401	5	0	5	0	10
PDB_00070	tRNA links to Rfam database...	0.58	0.58	0.58	14	2826	10	1	9	0	10
PDB_00074	-	-0.03	0.00	0.00	0	370	8	0	8	0	12
PDB_00081	-	0.94	0.89	1.00	8	182	0	0	0	0	1
PDB_00088	-	0.86	0.75	1.00	9	426	1	0	0	1	3
PDB_00096	-	-0.03	0.00	0.00	0	319	6	0	6	0	12
PDB_00098	-	0.81	0.67	1.00	4	227	0	0	0	0	2
PDB_00102	-	0.93	0.88	1.00	7	224	0	0	0	0	1
PDB_00104	-	-0.02	0.00	0.00	0	616	14	0	14	0	16
PDB_00107	-	0.40	0.27	0.60	3	460	3	0	2	1	8
PDB_00108	-	1.00	1.00	1.00	7	203	0	0	0	0	0
PDB_00110	-	1.00	1.00	1.00	7	246	0	0	0	0	0
PDB_00113	-	0.94	0.89	1.00	8	223	0	0	0	0	1
PDB_00115	-	-0.02	0.00	0.00	0	549	12	0	12	0	16
PDB_00116	-	0.91	0.83	1.00	5	226	0	0	0	0	1
PDB_00119	-	0.95	0.90	1.00	9	244	0	0	0	0	1
PDB_00120	-	0.95	0.90	1.00	9	222	0	0	0	0	1
PDB_00121	-	0.95	0.90	1.00	9	222	0	0	0	0	1
PDB_00122	-	0.91	0.83	1.00	10	290	0	0	0	0	2
PDB_00123	-	-0.01	0.00	0.00	0	4153	33	0	33	0	36
PDB_00124	-	0.86	0.90	0.82	9	485	2	2	0	0	1
PDB_00125	-	-0.03	0.00	0.00	0	225	6	0	6	0	10
PDB_00128	-	0.80	0.71	0.91	10	485	1	0	1	0	4
PDB_00130	-	1.00	1.00	1.00	6	270	0	0	0	0	0
PDB_00132	-	-0.02	0.00	0.00	0	428	7	0	7	0	12
PDB_00134	-	0.94	1.00	0.89	8	369	1	1	0	0	0
PDB_00136	-	0.76	0.73	0.79	19	2391	5	0	5	0	7
PDB_00137	-	0.62	0.46	0.86	6	399	1	0	1	0	7
PDB_00138	-	0.94	1.00	0.89	8	369	1	1	0	0	0
PDB_00142	-	0.87	0.83	0.91	10	424	1	0	1	0	2
PDB_00149	-	0.89	0.80	1.00	12	691	0	0	0	0	3
PDB_00150	-	0.95	0.90	1.00	9	291	1	0	0	1	1
PDB_00152	-	0.93	0.88	1.00	7	183	0	0	0	0	1
PDB_00153	-	0.95	0.90	1.00	9	244	0	0	0	0	1
PDB_00155	-	-0.02	0.00	0.00	0	320	5	0	5	0	8
PDB_00157	-	0.27	0.24	0.30	7	3298	19	0	16	3	22
PDB_00158	-	0.59	0.40	0.89	8	852	1	0	1	0	12
PDB_00159	-	0.67	0.45	1.00	5	346	0	0	0	0	6
PDB_00160	-	0.94	0.89	1.00	8	268	0	0	0	0	1
PDB_00168	-	0.66	0.67	0.67	4	294	3	1	1	1	2
PDB_00169	-	0.83	0.70	1.00	7	224	0	0	0	0	3
PDB_00170	-	0.93	0.88	1.00	14	616	0	0	0	0	2
PDB_00171	-	0.70	0.50	1.00	6	429	0	0	0	0	6
PDB_00174	-	0.90	0.82	1.00	18	1017	0	0	0	0	4
PDB_00175	-	-0.01	0.00	0.00	0	4528	32	0	32	0	36
PDB_00178	-	0.40	0.27	0.60	3	523	2	0	2	0	8
PDB_00181	-	0.88	0.78	1.00	7	224	0	0	0	0	2
PDB_00182	-	0.88	0.78	1.00	7	246	0	0	0	0	2
PDB_00183	-	0.10	0.09	0.13	2	1470	13	0	13	0	21
PDB_00184	-	-0.02	0.00	0.00	0	550	11	0	11	0	13
PDB_00185	-	-0.01	0.00	0.00	0	2901	25	1	24	0	28
PDB_00190	-	0.95	0.90	1.00	9	222	0	0	0	0	1
PDB_00192	-	0.21	0.17	0.29	6	3219	15	0	15	0	30
PDB_00195	-	-0.01	0.00	0.00	0	3453	33	0	33	0	42
PDB_00196	-	0.92	0.86	1.00	24	1572	0	0	0	0	4
PDB_00197	-	1.00	1.00	1.00	7	293	0	0	0	0	0
PDB_00200	-	0.94	0.89	1.00	8	202	0	0	0	0	1
PDB_00201	-	0.77	0.60	1.00	6	319	0	0	0	0	4
PDB_00202	-	0.96	0.93	1.00	13	548	1	0	0	1	1
PDB_00203	-	0.96	0.92	1.00	12	549	0	0	0	0	1
PDB_00205	-	0.84	0.71	1.00	10	425	0	0	0	0	4
PDB_00206	-	1.00	1.00	1.00	8	268	0	0	0	0	0
PDB_00207	-	0.88	0.79	1.00	11	367	0	0	0	0	3
PDB_00209	-	0.96	1.00	0.92	11	549	1	1	0	0	0
PDB_00211	-	0.89	0.80	1.00	8	182	0	0	0	0	2
PDB_00214	-	0.73	0.55	1.00	6	400	0	0	0	0	5
PDB_00215	-	-0.02	0.00	0.00	0	1106	22	0	22	0	24
PDB_00219	-	1.00	1.00	1.00	7	203	0	0	0	0	0
PDB_00221	-	0.88	0.78	1.00	7	246	0	0	0	0	2
PDB_00224	-	0.93	0.88	1.00	7	183	0	0	0	0	1
PDB_00229	tRNA links to Rfam database...	0.96	0.91	1.00	21	2754	0	0	0	0	2
PDB_00234	-	-0.04	0.00	0.00	0	268	8	0	8	0	12
PDB_00236	-	-0.02	0.00	0.00	0	1110	18	0	18	0	24
PDB_00237	-	0.88	0.78	1.00	7	371	1	0	0	1	2
PDB_00239	-	0.29	0.22	0.40	4	810	6	0	6	0	14
PDB_00243	-	1.00	1.00	1.00	12	618	0	0	0	0	0
PDB_00248	-	0.86	0.75	1.00	9	267	0	0	0	0	3
PDB_00249	-	-0.02	0.00	0.00	0	272	4	0	4	0	11
PDB_00250	-	0.43	0.40	0.48	10	1749	11	2	9	0	15
PDB_00252	-	0.97	0.93	1.00	14	766	2	0	0	2	1
PDB_00254	-	-0.04	0.00	0.00	0	266	10	0	10	0	12
PDB_00256	-	0.49	0.75	0.33	3	316	7	6	0	1	1
PDB_00257	-	0.90	0.82	1.00	9	342	0	0	0	0	2
PDB_00258	-	1.00	1.00	1.00	8	245	0	0	0	0	0
PDB_00261	-	-0.03	0.00	0.00	0	486	10	0	10	0	16
PDB_00262	-	0.25	0.25	0.27	6	1106	16	0	16	0	18
PDB_00264	-	-0.02	0.00	0.00	0	1112	16	0	16	0	18
PDB_00267	-	-0.03	0.00	0.00	0	366	12	0	12	0	14
PDB_00286	-	-0.03	0.00	0.00	0	184	8	0	6	2	6
PDB_00293	-	-0.01	0.00	0.00	0	1111	17	8	9	0	12
PDB_00312	-	1.00	1.00	1.00	9	426	0	0	0	0	0
PDB_00313	tRNA links to Rfam database...	0.75	0.79	0.71	15	2680	9	2	4	3	4
PDB_00317	-	1.00	1.00	1.00	10	368	1	0	0	1	0
PDB_00326	-	0.70	0.61	0.81	17	3720	6	0	4	2	11
PDB_00327	tRNA links to Rfam database...	0.68	0.70	0.67	16	3057	8	0	8	0	7
PDB_00339	-	0.52	0.44	0.64	7	655	4	0	4	0	9
PDB_00341	-	-0.02	0.00	0.00	0	692	11	0	11	0	16
PDB_00342	-	-0.02	0.00	0.00	0	762	18	0	18	0	10
PDB_00343	-	0.87	0.81	0.94	17	1578	2	0	1	1	4
PDB_00347	-	0.42	0.40	0.47	8	1159	9	0	9	0	12
PDB_00349	-	-0.01	0.00	0.00	0	936	10	0	10	0	14
PDB_00351	-	-0.02	0.00	0.00	0	551	10	0	10	0	12
PDB_00352	-	0.92	0.84	1.00	16	1209	0	0	0	0	3
PDB_00357	-	0.89	0.80	1.00	8	772	0	0	0	0	2
PDB_00362	tRNA links to Rfam database...	0.98	0.95	1.00	21	2829	0	0	0	0	1
PDB_00365	-	0.96	0.93	1.00	13	422	0	0	0	0	1
PDB_00371	-	0.89	0.80	1.00	12	549	0	0	0	0	3
PDB_00377	-	0.91	0.92	0.92	11	516	1	0	1	0	1
PDB_00378	-	0.88	0.79	1.00	11	692	0	0	0	0	3
PDB_00392	tRNA links to Rfam database...	0.48	0.48	0.50	10	2830	10	2	8	0	11
PDB_00400	-	-0.01	0.00	0.00	0	3139	21	1	20	0	34
PDB_00402	tRNA links to Rfam database...	0.96	0.91	1.00	21	2754	0	0	0	0	2
PDB_00411	-	0.81	0.67	1.00	10	585	0	0	0	0	5
PDB_00420	-	0.89	0.80	1.00	8	488	3	0	0	3	2
PDB_00425	tRNA links to Rfam database...	0.93	0.86	1.00	19	2682	0	0	0	0	3
PDB_00430	tRNA links to Rfam database...	0.72	0.72	0.72	18	3215	7	3	4	0	7
PDB_00431	tRNA links to Rfam database...	0.77	0.75	0.79	15	2192	4	0	4	0	5
PDB_00454	-	0.84	0.81	0.87	26	2671	4	0	4	0	6
PDB_00474	tRNA links to Rfam database...	0.51	0.52	0.50	12	2677	12	3	9	0	11
PDB_00481	-	0.73	0.54	1.00	14	1877	0	0	0	0	12
PDB_00513	-	1.00	1.00	1.00	7	224	0	0	0	0	0
PDB_00522	-	0.94	0.89	1.00	16	1112	0	0	0	0	2
PDB_00526	-	-0.01	0.00	0.00	0	294	6	1	5	0	3
PDB_00527	-	-0.02	0.00	0.00	0	294	6	1	5	0	5
PDB_00537	-	0.94	0.89	1.00	8	398	0	0	0	0	1
PDB_00553	mir-TAR links to Rfam database...	1.00	1.00	1.00	11	454	0	0	0	0	0
PDB_00570	-	0.90	0.82	1.00	18	2260	0	0	0	0	4
PDB_00571	tRNA links to Rfam database...	0.87	0.80	0.95	20	3300	1	1	0	0	5
PDB_00584	-	0.18	0.18	0.20	3	1470	12	0	12	0	14
PDB_00599	-	0.96	0.93	1.00	13	548	0	0	0	0	1
PDB_00603	-	0.95	0.90	1.00	9	244	0	0	0	0	1
PDB_00611	-	-0.01	0.00	0.00	0	772	8	1	7	0	11
PDB_00617	-	0.95	0.90	1.00	9	267	0	0	0	0	1
PDB_00627	-	0.72	0.71	0.75	12	1637	6	0	4	2	5
PDB_00629	-	0.19	0.17	0.24	4	1636	13	1	12	0	19
PDB_00637	-	0.90	0.90	0.90	19	2325	4	0	2	2	2
PDB_00648	-	0.92	0.92	0.92	12	848	1	0	1	0	1
PDB_00663	-	-0.01	0.00	0.00	0	932	18	0	14	4	10
PDB_00667	tRNA links to Rfam database...	0.66	0.68	0.65	15	2827	9	4	4	1	7
PDB_00681	-	-0.01	0.00	0.00	0	1256	19	0	19	0	19
PDB_00682	-	-0.03	0.00	0.00	0	482	14	0	14	0	16
PDB_00686	-	0.94	0.89	1.00	17	686	0	0	0	0	2
PDB_00687	-	0.91	0.83	1.00	10	620	2	0	0	2	2
PDB_00692	-	0.67	0.60	0.75	12	1209	4	0	4	0	8
PDB_00693	-	0.94	0.88	1.00	15	1161	1	0	0	1	2
PDB_00698	-	0.94	0.89	1.00	17	844	0	0	0	0	2
PDB_00702	-	0.91	0.89	0.94	32	4337	4	0	2	2	4
PDB_00705	-	1.00	1.00	1.00	8	245	1	0	0	1	0
PDB_00709	-	-0.02	0.00	0.00	0	766	14	0	14	0	16
PDB_00710	-	-0.01	0.00	0.00	0	772	8	0	8	0	16
PDB_00713	-	0.45	0.43	0.47	9	1997	10	0	10	0	12
PDB_00716	HDV_ribozyme links to Rfam database...	0.69	0.70	0.70	16	2678	8	0	7	1	7
PDB_00724	-	0.76	0.69	0.83	20	2121	4	0	4	0	9
PDB_00725	-	0.85	0.73	1.00	11	584	0	0	0	0	4
PDB_00726	-	-0.02	0.00	0.00	0	344	8	0	7	1	9
PDB_00727	-	1.00	1.00	1.00	7	554	3	0	0	3	0
PDB_00728	-	0.97	0.93	1.00	14	482	0	0	0	0	1
PDB_00732	-	0.31	0.30	0.33	9	2976	19	0	18	1	21
PDB_00733	-	0.20	0.20	0.21	6	2897	24	2	21	1	24
PDB_00734	-	0.66	0.60	0.75	6	223	2	0	2	0	4
PDB_00737	-	0.85	0.73	1.00	8	343	0	0	0	0	3
PDB_00740	-	-0.02	0.00	0.00	0	228	3	0	3	0	11
PDB_00741	Entero_5_CRE links to Rfam database...	0.87	0.76	1.00	13	690	0	0	0	0	4
PDB_00746	-	0.95	0.89	1.00	34	4719	2	0	0	2	4
PDB_00751	-	0.87	0.77	1.00	10	585	2	0	0	2	3
PDB_00754	-	1.00	1.00	1.00	12	1473	3	0	0	3	0
PDB_00767	-	1.00	1.00	1.00	20	2191	4	0	0	4	0
PDB_00800	-	0.30	0.31	0.30	9	2050	21	1	20	0	20
PDB_00806	-	0.51	0.44	0.61	11	1812	7	0	7	0	14
PDB_00807	-	0.57	0.48	0.69	11	1875	8	0	5	3	12
PDB_00809	-	-0.02	0.00	0.00	0	490	6	0	6	0	14
PDB_00810	s2m links to Rfam database...	0.46	0.41	0.54	7	1068	6	2	4	0	10
PDB_00815	-	0.58	0.56	0.63	5	622	3	0	3	0	4
PDB_00823	-	-0.03	0.00	0.00	0	186	4	0	4	0	9
PDB_00828	Purine links to Rfam database...	0.86	0.74	1.00	20	2465	2	0	0	2	7
PDB_00829	Purine links to Rfam database...	0.60	0.46	0.79	11	2264	5	0	3	2	13
PDB_00842	-	1.00	1.00	1.00	8	370	0	0	0	0	0
PDB_00851	-	0.44	0.39	0.50	16	4721	16	0	16	0	25
PDB_00855	-	1.00	1.00	1.00	10	455	1	0	0	1	0
PDB_00857	-	1.00	1.00	1.00	15	1066	0	0	0	0	0
PDB_00863	-	0.66	0.44	1.00	8	982	0	0	0	0	10
PDB_00865	-	0.96	0.92	1.00	11	340	0	0	0	0	1
PDB_00868	-	1.00	1.00	1.00	14	1312	2	0	0	2	0
PDB_00870	-	-0.02	0.00	0.00	0	1109	19	0	19	0	16
PDB_00871	-	-0.02	0.00	0.00	0	1106	22	0	22	0	24
PDB_00873	-	-0.01	0.00	0.00	0	4514	46	0	46	0	48
PDB_00874	-	-0.02	0.00	0.00	0	930	16	0	16	0	20
PDB_00876	HIV_FE links to Rfam database...	0.92	0.90	0.95	18	971	1	0	1	0	2
PDB_00878	-	0.96	0.92	1.00	11	485	0	0	0	0	1
PDB_00883	-	1.00	1.00	1.00	12	618	0	0	0	0	0
PDB_00885	-	0.91	0.89	0.94	16	803	1	0	1	0	2
PDB_00886	-	0.37	0.35	0.41	14	4152	20	0	20	0	26
PDB_00890	-	1.00	1.00	1.00	14	689	0	0	0	0	0
PDB_00891	-	-0.02	0.00	0.00	0	928	18	6	12	0	15
PDB_00892	-	-0.01	0.00	0.00	0	2543	16	2	11	3	15
PDB_00918	-	0.93	1.00	0.88	7	317	1	1	0	0	0
PDB_00923	-	1.00	1.00	1.00	6	184	0	0	0	0	0
PDB_00924	-	0.97	0.94	1.00	34	3621	0	0	0	0	2
PDB_00925	-	0.95	0.91	1.00	10	341	1	0	0	1	1
PDB_00928	-	0.79	0.63	1.00	5	295	0	0	0	0	3
PDB_00929	-	-0.02	0.00	0.00	0	762	18	0	18	0	20
PDB_00932	-	0.63	0.62	0.67	8	808	5	1	3	1	5
PDB_00937	-	0.94	0.89	1.00	16	614	0	0	0	0	2
PDB_00943	-	0.80	0.80	0.80	12	1416	5	0	3	2	3
PDB_00945	-	0.95	0.90	1.00	9	456	0	0	0	0	1
PDB_00960	-	-0.03	0.00	0.00	0	394	12	2	10	0	10
PDB_00961	-	1.00	1.00	1.00	10	1760	12	0	0	12	0
PDB_00964	-	1.00	1.00	1.00	9	621	4	0	0	4	0
PDB_00966	-	-0.03	0.00	0.00	0	245	8	2	6	0	7
PDB_00973	-	-0.02	0.00	0.00	0	347	4	0	4	0	8
PDB_00974	-	-0.02	0.00	0.00	0	374	4	0	4	0	9
PDB_00986	-	0.84	0.71	1.00	10	425	0	0	0	0	4
PDB_00987	-	0.46	0.38	0.60	6	551	4	0	4	0	10
PDB_00989	-	-0.01	0.00	0.00	0	2977	26	0	26	0	36
PDB_01001	tRNA links to Rfam database...	0.16	0.17	0.17	3	2127	15	3	12	0	15
PDB_01002	tRNA links to Rfam database...	0.62	0.62	0.62	13	2754	10	0	8	2	8
PDB_01008	-	1.00	1.00	1.00	12	583	0	0	0	0	0
PDB_01009	tRNA links to Rfam database...	0.90	0.90	0.90	19	2464	4	0	2	2	2
PDB_01017	-	-0.03	0.00	0.00	0	423	12	0	12	0	14
PDB_01019	-	-0.03	0.00	0.00	0	423	12	0	12	0	14
PDB_01020	Purine links to Rfam database...	0.86	0.74	1.00	17	2261	3	0	0	3	6
PDB_01025	-	1.00	1.00	1.00	9	244	0	0	0	0	0
PDB_01035	-	0.96	0.92	1.00	24	1516	0	0	0	0	2
PDB_01040	-	0.30	0.30	0.33	6	1110	12	0	12	0	14
PDB_01044	-	1.00	1.00	1.00	16	930	3	0	0	3	0
PDB_01045	-	0.98	0.96	1.00	22	1203	1	0	0	1	1
PDB_01050	UnaL2 links to Rfam database...	0.92	0.85	1.00	11	619	2	0	0	2	2
PDB_01051	Telomerase-cil links to Rfam database...	0.31	0.31	0.33	4	891	9	1	7	1	9
PDB_01053	tRNA links to Rfam database...	1.00	1.00	1.00	16	1362	0	0	0	0	0
PDB_01056	-	0.94	0.89	1.00	8	245	0	0	0	0	1
PDB_01057	-	1.00	1.00	1.00	8	202	0	0	0	0	0
PDB_01059	-	0.93	1.00	0.88	7	223	1	1	0	0	0
PDB_01060	-	-0.01	0.00	0.00	0	1986	30	0	30	0	21
PDB_01061	-	0.09	0.10	0.11	4	3124	32	0	32	0	36
PDB_01062	-	0.67	0.56	0.82	9	935	2	0	2	0	7
PDB_01065	-	-0.03	0.00	0.00	0	225	6	0	6	0	10
PDB_01071	-	0.60	0.54	0.70	7	396	3	0	3	0	6
PDB_01073	SAM links to Rfam database...	0.51	0.47	0.55	16	4342	14	2	11	1	18
PDB_01074	-	-0.01	0.00	0.00	0	2746	29	3	26	0	25
PDB_01075	-	0.63	0.56	0.72	18	2390	7	0	7	0	14
PDB_01077	-	-0.01	0.00	0.00	0	1937	16	0	16	0	19
PDB_01084	-	1.00	1.00	1.00	7	224	0	0	0	0	0
PDB_01097	-	0.93	0.88	1.00	7	203	0	0	0	0	1
PDB_01099	-	0.85	0.73	1.00	8	268	0	0	0	0	3
PDB_01100	-	0.05	0.05	0.07	1	1471	13	0	13	0	21
PDB_01108	-	1.00	1.00	1.00	9	222	0	0	0	0	0
PDB_01114	TPP links to Rfam database...	0.73	0.63	0.85	17	2830	3	0	3	0	10
PDB_01117	-	-0.02	0.00	0.00	0	770	10	0	10	0	17
PDB_01118	-	0.92	0.84	1.00	16	1580	1	0	0	1	3
PDB_01119	-	0.92	0.86	1.00	12	618	0	0	0	0	2
PDB_01126	-	0.48	0.50	0.47	14	3051	18	2	14	2	14
PDB_01127	-	-0.01	0.00	0.00	0	976	15	0	14	1	14
PDB_01128	-	0.66	0.63	0.71	17	2751	9	1	6	2	10
PDB_01130	-	1.00	1.00	1.00	20	1750	2	0	0	2	0
PDB_01133	-	1.00	1.00	1.00	10	341	0	0	0	0	0
PDB_01135	-	-0.02	0.00	0.00	0	397	9	2	7	0	9
PDB_01137	-	-0.02	0.00	0.00	0	320	5	0	5	0	8
PDB_01138	-	-0.02	0.00	0.00	0	317	8	0	8	0	7
PDB_01145	-	1.00	1.00	1.00	14	766	2	0	0	2	0
PDB_01150	-	0.93	0.88	1.00	7	224	0	0	0	0	1
PDB_01152	HIV_FS2 links to Rfam database...	0.88	0.79	1.00	11	550	0	0	0	0	3
PDB_01154	-	0.85	0.82	0.90	9	396	2	0	1	1	2
PDB_01156	-	-0.01	0.00	0.00	0	3802	26	0	26	0	35
PDB_01160	-	0.52	0.50	0.56	10	2062	8	1	7	0	10
PDB_01162	-	0.55	0.56	0.56	5	1531	7	0	4	3	4
PDB_01163	-	0.98	0.95	1.00	21	1014	0	0	0	0	1
PDB_01164	-	0.96	0.92	1.00	24	1516	0	0	0	0	2
PDB_01167	-	0.70	0.50	1.00	4	186	0	0	0	0	4
PDB_01168	-	0.86	0.75	1.00	6	184	0	0	0	0	2
PDB_01178	-	0.64	0.57	0.73	8	517	3	0	3	0	6
PDB_01194	-	0.77	0.60	1.00	9	487	0	0	0	0	6
PDB_01199	-	0.81	0.67	1.00	16	2129	0	0	0	0	8
PDB_01201	-	0.85	0.73	1.00	16	1112	0	0	0	0	6
PDB_01203	-	0.95	0.95	0.95	18	1157	1	1	0	0	1
PDB_01205	-	1.00	1.00	1.00	18	1017	0	0	0	0	0
PDB_01208	-	0.11	0.10	0.14	2	1162	12	0	12	0	18
PDB_01209	-	0.11	0.10	0.15	2	1163	11	0	11	0	18
PDB_01212	-	0.21	0.15	0.33	3	1167	6	0	6	0	17
PDB_01213	-	0.62	0.56	0.71	10	1067	4	1	3	0	8
PDB_01216	-	0.10	0.10	0.13	2	1161	13	0	13	0	18
PDB_01219	-	-0.02	0.00	0.00	0	930	16	0	16	0	20
PDB_01237	-	1.00	1.00	1.00	8	268	0	0	0	0	0
PDB_01251	-	-0.03	0.00	0.00	0	317	8	0	8	0	13
PDB_01260	-	0.65	0.64	0.67	16	1806	8	1	7	0	9
PDB_01262	-	-0.03	0.00	0.00	0	186	4	0	4	0	8
PDB_01281	-	-0.03	0.00	0.00	0	366	12	0	12	0	14
PDB_01299	-	0.84	0.87	0.81	13	887	3	1	2	0	2
PDB_01313	-	-0.03	0.00	0.00	0	268	8	4	4	0	8
PDB_01325	-	0.91	0.83	1.00	10	266	0	0	0	0	2
PDB_01332	-	0.73	0.78	0.70	7	341	3	2	1	0	2
PDB_01337	-	0.67	0.45	1.00	5	556	0	0	0	0	6
PDB_01338	-	0.30	0.25	0.40	2	271	3	0	3	0	6
PDB_01340	-	1.00	1.00	1.00	8	292	0	0	0	0	0
RFA_00389	Hammerhead_3 links to Rfam database...	0.69	0.67	0.71	10	1417	6	0	4	2	5
RFA_00390	Hammerhead_3 links to Rfam database...	0.69	0.67	0.71	10	1417	6	0	4	2	5
RFA_00391	Hammerhead_3 links to Rfam database...	0.66	0.67	0.67	10	1416	7	0	5	2	5
RFA_00396	Hammerhead_3 links to Rfam database...	0.48	0.47	0.50	7	1417	9	0	7	2	8
RFA_00402	Hammerhead_3 links to Rfam database...	0.69	0.67	0.71	10	1417	4	0	4	0	5
RFA_00409	Hammerhead_3 links to Rfam database...	0.65	0.53	0.80	8	1421	4	0	2	2	7
RFA_00416	Hammerhead_3 links to Rfam database...	0.93	0.93	0.93	14	1470	5	0	1	4	1
RFA_00420	-	1.00	1.00	1.00	15	3306	14	0	0	14	0
RFA_00425	Hammerhead_3 links to Rfam database...	0.93	0.87	1.00	13	1640	5	0	0	5	2
RFA_00427	Hammerhead_3 links to Rfam database...	0.67	0.60	0.75	9	1473	6	0	3	3	6
RFA_00429	-	1.00	1.00	1.00	9	771	2	0	0	2	0
RFA_00433	Hammerhead_3 links to Rfam database...	0.66	0.67	0.67	10	1416	7	0	5	2	5
RFA_00434	Hammerhead_3 links to Rfam database...	-0.01	0.00	0.00	0	1417	14	3	11	0	15
RFA_00436	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	3	0	0	3	1
RFA_00440	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1471	3	0	0	3	1
RFA_00442	Hammerhead_3 links to Rfam database...	0.65	0.53	0.80	8	1421	4	0	2	2	7
RFA_00444	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1525	2	0	0	2	0
RFA_00446	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1471	3	0	0	3	1
RFA_00449	Hammerhead_3 links to Rfam database...	0.77	0.60	1.00	9	1476	2	0	0	2	6
RFA_00583	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4935	14	0	0	14	0
RFA_00584	Y_RNA links to Rfam database...	0.87	0.87	0.87	13	2911	14	0	2	12	2
RFA_00585	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4836	14	0	0	14	0
RFA_00586	Y_RNA links to Rfam database...	0.47	0.53	0.42	8	3897	13	4	7	2	7
RFA_00587	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4836	13	0	0	13	0
RFA_00588	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4545	15	0	0	15	0
RFA_00589	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4356	16	0	0	16	0
RFA_00594	Y_RNA links to Rfam database...	0.90	0.87	0.93	13	2761	5	0	1	4	2
RFA_00632	HDV_ribozyme links to Rfam database...	0.40	0.43	0.39	12	4064	19	4	15	0	16
RFA_00636	HDV_ribozyme links to Rfam database...	0.80	0.86	0.75	24	3973	8	6	2	0	4
RFA_00642	Vimentin3 links to Rfam database...	-0.01	0.00	0.00	0	2911	15	2	13	0	18
RFA_00643	Vimentin3 links to Rfam database...	-0.01	0.00	0.00	0	2196	15	1	14	0	18
RFA_00644	Vimentin3 links to Rfam database...	-0.01	0.00	0.00	0	2682	19	4	15	0	18
RFA_00645	Vimentin3 links to Rfam database...	0.18	0.17	0.20	3	2400	13	1	11	1	15
RFA_00649	Vimentin3 links to Rfam database...	0.48	0.50	0.47	9	2126	11	0	10	1	9
RFA_00651	Vimentin3 links to Rfam database...	0.53	0.50	0.56	9	2064	8	0	7	1	9
RFA_00653	Vimentin3 links to Rfam database...	0.33	0.33	0.33	6	2127	12	3	9	0	12
RFA_00654	Vimentin3 links to Rfam database...	-0.01	0.00	0.00	0	2397	18	7	11	0	18
RFA_00658	Hammerhead_1 links to Rfam database...	0.33	0.29	0.40	4	1118	8	0	6	2	10
RFA_00659	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	1119	11	0	9	2	14
RFA_00664	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	980	11	0	10	1	14
RFA_00667	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	978	13	1	11	1	14
RFA_00668	Hammerhead_1 links to Rfam database...	0.46	0.43	0.50	6	978	7	0	6	1	8
RFA_00672	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	897	6	0	6	0	13
RFA_00673	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	1120	9	0	8	1	14
RFA_00674	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	1116	12	0	12	0	14
RFA_00675	Hammerhead_1 links to Rfam database...	0.29	0.29	0.31	4	977	9	1	8	0	10
RFA_00677	Hammerhead_1 links to Rfam database...	0.61	0.57	0.67	8	978	6	0	4	2	6
RFA_00678	Hammerhead_1 links to Rfam database...	0.33	0.29	0.40	4	936	7	0	6	1	10
RFA_00680	Hammerhead_1 links to Rfam database...	0.71	0.71	0.71	10	1114	7	0	4	3	4
RFA_00683	-	-0.01	0.00	0.00	0	1023	12	0	12	0	14
RFA_00684	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	978	12	0	12	0	14
RFA_00685	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	979	11	0	11	0	14
RFA_00703	Hammerhead_1 links to Rfam database...	0.39	0.43	0.35	6	4261	24	3	8	13	8
RFA_00704	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	980	10	0	10	0	14
RFA_00705	Hammerhead_1 links to Rfam database...	0.74	0.71	0.77	10	1022	4	0	3	1	4
RFA_00706	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	1026	9	1	8	0	14
RFA_00707	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	1026	9	1	8	0	14
RFA_00708	Hammerhead_1 links to Rfam database...	0.35	0.29	0.44	4	1026	7	0	5	2	10
RFA_00709	Hammerhead_1 links to Rfam database...	0.23	0.21	0.27	3	979	9	0	8	1	11
RFA_00710	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	979	11	0	11	0	14
RFA_00711	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	1026	9	0	9	0	14
RFA_00715	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	933	13	0	13	0	14
RFA_00716	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	936	10	2	8	0	14
RFA_00717	Hammerhead_1 links to Rfam database...	0.48	0.43	0.55	6	892	5	0	5	0	8
RFA_00720	-	0.38	0.43	0.35	6	1159	11	2	9	0	8
RFA_00721	-	-0.01	0.00	0.00	0	1163	13	2	11	0	14
RFA_00730	s2m links to Rfam database...	0.28	0.25	0.33	3	894	6	1	5	0	9
RFA_00731	s2m links to Rfam database...	0.41	0.42	0.42	5	891	8	2	5	1	7
RFA_00733	s2m links to Rfam database...	0.43	0.42	0.45	5	892	7	2	4	1	7
RFA_00734	s2m links to Rfam database...	0.16	0.17	0.18	2	892	10	0	9	1	10
RFA_00736	s2m links to Rfam database...	0.41	0.42	0.42	5	891	8	2	5	1	7
RFA_00737	s2m links to Rfam database...	0.60	0.58	0.64	7	892	5	0	4	1	5
RFA_00745	s2m links to Rfam database...	0.43	0.42	0.45	5	935	7	2	4	1	7
RFA_00749	s2m links to Rfam database...	0.41	0.42	0.42	5	891	8	2	5	1	7
RFA_00758	s2m links to Rfam database...	-0.01	0.00	0.00	0	893	10	0	10	0	12
RFA_00762	s2m links to Rfam database...	0.39	0.42	0.38	5	890	8	2	6	0	7
RFA_00763	s2m links to Rfam database...	0.41	0.42	0.42	5	891	7	2	5	0	7
RFA_00764	s2m links to Rfam database...	0.43	0.42	0.45	5	892	7	2	4	1	7
RFA_00765	s2m links to Rfam database...	0.60	0.58	0.64	7	892	5	0	4	1	5
RFA_00767	Corona_pk3 links to Rfam database...	1.00	1.00	1.00	18	1873	4	0	0	4	0
RFA_00768	Corona_pk3 links to Rfam database...	1.00	1.00	1.00	18	1873	3	0	0	3	0
RFA_00769	Corona_pk3 links to Rfam database...	0.54	0.56	0.53	10	1934	9	4	5	0	8
RFA_00770	Corona_pk3 links to Rfam database...	0.97	0.94	1.00	17	1999	3	0	0	3	1
RFA_00773	Corona_pk3 links to Rfam database...	0.97	1.00	0.95	18	1934	4	1	0	3	0
RFA_00779	Corona_pk3 links to Rfam database...	0.83	0.83	0.83	15	1935	4	1	2	1	3
RFA_00808	RydC links to Rfam database...	1.00	1.00	1.00	16	2000	0	0	0	0	0
RFA_00809	RydC links to Rfam database...	0.79	0.81	0.76	13	2128	4	0	4	0	3
SPR_00007	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00009	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	0	0	0	0	0
SPR_00010	tRNA links to Rfam database...	0.95	0.95	0.95	20	2829	1	0	1	0	1
SPR_00012	tRNA links to Rfam database...	0.09	0.10	0.09	2	2827	21	3	18	0	18
SPR_00013	tRNA links to Rfam database...	0.48	0.50	0.48	10	2829	11	3	8	0	10
SPR_00016	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00017	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00020	tRNA links to Rfam database...	0.76	0.80	0.73	16	2679	8	2	4	2	4
SPR_00022	tRNA links to Rfam database...	0.70	0.71	0.68	15	2904	7	3	4	0	6
SPR_00023	tRNA links to Rfam database...	0.80	0.86	0.75	18	2826	6	0	6	0	3
SPR_00025	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	1	0	0	1	0
SPR_00026	tRNA links to Rfam database...	0.73	0.76	0.70	16	2903	8	0	7	1	5
SPR_00027	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00029	tRNA links to Rfam database...	0.52	0.55	0.50	11	2606	11	1	10	0	9
SPR_00030	-	0.82	0.67	1.00	14	2471	0	0	0	0	7
SPR_00032	tRNA links to Rfam database...	1.00	1.00	1.00	21	2535	1	0	0	1	0
SPR_00033	tRNA links to Rfam database...	1.00	1.00	1.00	21	2607	0	0	0	0	0
SPR_00034	-	1.00	1.00	1.00	21	2464	1	0	0	1	0
SPR_00036	tRNA links to Rfam database...	0.78	0.80	0.76	16	2754	6	0	5	1	4
SPR_00044	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	2	0	0	2	0
SPR_00045	tRNA links to Rfam database...	0.95	0.95	0.95	21	2828	1	0	1	0	1
SPR_00060	tRNA links to Rfam database...	0.52	0.57	0.48	12	2750	13	5	8	0	9
SPR_00064	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00065	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00066	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	2	0	0	2	0
SPR_00068	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00070	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00074	tRNA links to Rfam database...	0.78	0.80	0.76	16	2829	7	2	3	2	4
SPR_00078	-	0.62	0.67	0.59	10	1874	8	5	2	1	5
SPR_00079	tRNA links to Rfam database...	0.83	0.68	1.00	13	2472	1	0	0	1	6
SPR_00080	tRNA links to Rfam database...	0.83	0.68	1.00	13	2402	0	0	0	0	6
SPR_00086	tRNA links to Rfam database...	0.74	0.76	0.73	16	2828	6	2	4	0	5
SPR_00087	tRNA links to Rfam database...	0.65	0.65	0.65	13	2830	8	2	5	1	7
SPR_00088	tRNA links to Rfam database...	0.65	0.65	0.65	13	2830	8	2	5	1	7
SPR_00089	tRNA links to Rfam database...	0.65	0.65	0.65	13	2830	8	2	5	1	7
SPR_00090	tRNA links to Rfam database...	0.65	0.65	0.65	13	2830	8	2	5	1	7
SPR_00091	tRNA links to Rfam database...	0.65	0.65	0.65	13	2830	8	2	5	1	7
SPR_00095	tRNA links to Rfam database...	0.78	0.76	0.80	16	2830	4	2	2	0	5
SPR_00111	tRNA links to Rfam database...	1.00	1.00	1.00	21	2680	1	0	0	1	0
SPR_00112	tRNA links to Rfam database...	0.74	0.76	0.73	16	2679	7	3	3	1	5
SPR_00113	tRNA links to Rfam database...	0.85	0.85	0.85	17	2755	6	0	3	3	3
SPR_00114	tRNA links to Rfam database...	1.00	1.00	1.00	21	2680	1	0	0	1	0
SPR_00115	tRNA links to Rfam database...	1.00	1.00	1.00	21	2680	1	0	0	1	0
SPR_00116	tRNA links to Rfam database...	0.95	0.95	0.95	20	2680	4	0	1	3	1
SPR_00117	tRNA links to Rfam database...	0.67	0.71	0.63	15	2826	9	1	8	0	6
SPR_00121	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	2	0	0	2	0
SPR_00124	tRNA links to Rfam database...	0.78	0.82	0.75	18	2532	6	2	4	0	4
SPR_00126	-	-0.01	0.00	0.00	0	2060	20	7	13	0	20
SPR_00127	-	0.15	0.17	0.14	3	2394	20	4	14	2	15
SPR_00137	tRNA links to Rfam database...	0.84	0.86	0.82	18	2904	9	0	4	5	3
SPR_00138	tRNA links to Rfam database...	0.76	0.80	0.73	16	2904	9	0	6	3	4
SPR_00139	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	1	0	0	1	0
SPR_00141	tRNA links to Rfam database...	1.00	1.00	1.00	20	2755	3	0	0	3	0
SPR_00142	-	0.27	0.26	0.28	5	2610	13	4	9	0	14
SPR_00153	tRNA links to Rfam database...	0.37	0.38	0.36	8	2904	14	3	11	0	13
SPR_00155	tRNA links to Rfam database...	0.53	0.57	0.50	12	2902	12	3	9	0	9
SPR_00156	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00163	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	1	0	0	1	0
SPR_00164	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00166	-	0.65	0.63	0.67	12	2538	7	1	5	1	7
SPR_00167	tRNA links to Rfam database...	1.00	1.00	1.00	20	2536	1	0	0	1	0
SPR_00176	tRNA links to Rfam database...	0.22	0.25	0.20	5	2825	20	6	14	0	15
SPR_00177	tRNA links to Rfam database...	0.52	0.57	0.48	12	2825	13	5	8	0	9
SPR_00178	tRNA links to Rfam database...	0.73	0.76	0.70	16	2827	7	3	4	0	5
SPR_00183	-	0.45	0.45	0.45	9	2830	11	0	11	0	11
SPR_00191	tRNA links to Rfam database...	-0.01	0.00	0.00	0	2828	22	4	18	0	21
SPR_00200	tRNA links to Rfam database...	0.71	0.76	0.67	16	2826	8	3	5	0	5
SPR_00209	tRNA links to Rfam database...	0.56	0.63	0.50	12	3546	14	6	6	2	7
SPR_00213	tRNA links to Rfam database...	0.51	0.57	0.46	12	3802	16	6	8	2	9
SPR_00215	tRNA links to Rfam database...	1.00	1.00	1.00	20	3550	4	0	0	4	0
SPR_00218	tRNA links to Rfam database...	1.00	1.00	1.00	20	3721	6	0	0	6	0
SPR_00219	tRNA links to Rfam database...	1.00	1.00	1.00	20	3721	6	0	0	6	0
SPR_00220	tRNA links to Rfam database...	0.65	0.65	0.65	13	3721	11	0	7	4	7
SPR_00221	tRNA links to Rfam database...	1.00	1.00	1.00	21	3720	4	0	0	4	0
SPR_00223	tRNA links to Rfam database...	0.90	0.85	0.94	17	3552	5	0	1	4	3
SPR_00224	tRNA links to Rfam database...	1.00	1.00	1.00	20	3721	5	0	0	5	0
SPR_00225	tRNA links to Rfam database...	1.00	1.00	1.00	21	3720	4	0	0	4	0
SPR_00226	tRNA links to Rfam database...	0.73	0.86	0.62	18	3626	11	6	5	0	3
SPR_00227	tRNA links to Rfam database...	0.79	0.81	0.77	17	3464	8	0	5	3	4
SPR_00228	tRNA links to Rfam database...	1.00	1.00	1.00	20	3808	3	0	0	3	0
SPR_00229	tRNA links to Rfam database...	0.95	0.95	0.95	20	3382	3	0	1	2	1
SPR_00230	tRNA links to Rfam database...	1.00	1.00	1.00	21	3549	3	0	0	3	0
SPR_00235	tRNA links to Rfam database...	-0.01	0.00	0.00	0	3714	27	9	18	0	21
SPR_00236	tRNA links to Rfam database...	0.95	0.95	0.95	19	3550	6	0	1	5	1
SPR_00246	tRNA links to Rfam database...	0.52	0.45	0.60	9	2686	8	1	5	2	11
SPR_00263	tRNA links to Rfam database...	0.65	0.67	0.64	14	3548	11	0	8	3	7
SPR_00271	tRNA links to Rfam database...	0.73	0.76	0.70	16	2827	8	0	7	1	5
SPR_00273	tRNA links to Rfam database...	0.31	0.33	0.29	7	2826	17	4	13	0	14
SPR_00276	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00277	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00279	tRNA links to Rfam database...	0.48	0.48	0.50	10	2906	12	0	10	2	11
SPR_00281	-	0.26	0.24	0.31	4	2003	9	3	6	0	13
SPR_00289	tRNA links to Rfam database...	0.76	0.80	0.73	16	2904	8	3	3	2	4
SPR_00294	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00295	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	1	0	0	1	0
SPR_00297	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	0	0	0	0	0
SPR_00298	tRNA links to Rfam database...	0.42	0.45	0.41	9	2753	13	2	11	0	11
SPR_00309	tRNA links to Rfam database...	0.67	0.71	0.63	15	2902	10	4	5	1	6
SPR_00314	tRNA links to Rfam database...	0.74	0.81	0.68	17	2901	10	0	8	2	4
SPR_00315	tRNA links to Rfam database...	0.74	0.81	0.68	17	2901	9	0	8	1	4
SPR_00316	tRNA links to Rfam database...	0.71	0.76	0.67	16	2902	9	3	5	1	5
SPR_00317	tRNA links to Rfam database...	0.31	0.35	0.28	7	2901	18	8	10	0	13
SPR_00318	tRNA links to Rfam database...	0.74	0.76	0.73	16	2904	6	2	4	0	5
SPR_00320	tRNA links to Rfam database...	0.79	0.79	0.79	15	2756	5	2	2	1	4
SPR_00321	tRNA links to Rfam database...	0.52	0.52	0.52	11	2982	10	2	8	0	10
SPR_00327	tRNA links to Rfam database...	0.95	0.95	0.95	20	2982	1	0	1	0	1
SPR_00329	tRNA links to Rfam database...	0.84	0.86	0.82	18	2828	6	0	4	2	3
SPR_00331	tRNA links to Rfam database...	1.00	1.00	1.00	20	2755	0	0	0	0	0
SPR_00333	tRNA links to Rfam database...	0.54	0.62	0.48	13	2748	14	4	10	0	8
SPR_00339	tRNA links to Rfam database...	0.48	0.52	0.44	11	2750	15	5	9	1	10
SPR_00352	tRNA links to Rfam database...	0.44	0.48	0.42	10	2902	14	3	11	0	11
SPR_00353	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	1	0	0	1	0
SPR_00356	tRNA links to Rfam database...	0.95	0.95	0.95	20	2754	1	0	1	0	1
SPR_00357	tRNA links to Rfam database...	0.76	0.81	0.71	17	2902	7	0	7	0	4
SPR_00358	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00359	tRNA links to Rfam database...	0.95	0.95	0.95	21	2904	1	0	1	0	1
SPR_00360	tRNA links to Rfam database...	-0.01	0.00	0.00	0	2684	17	3	14	0	22
SPR_00362	-	0.44	0.46	0.43	6	1417	8	2	6	0	7
SPR_00363	-	0.27	0.27	0.29	4	1582	10	1	9	0	11
SPR_00364	-	0.23	0.20	0.29	4	2197	10	3	7	0	16
SPR_00365	-	0.72	0.77	0.68	17	2531	8	1	7	0	5
SPR_00366	-	0.88	0.95	0.83	19	2533	4	2	2	0	1
SPR_00367	-	0.75	0.77	0.74	17	2462	6	2	4	0	5
SPR_00369	tRNA links to Rfam database...	0.52	0.57	0.48	12	2750	13	2	11	0	9
SPR_00370	tRNA links to Rfam database...	0.52	0.57	0.48	12	2750	13	2	11	0	9
SPR_00373	tRNA links to Rfam database...	0.73	0.76	0.70	16	2827	7	3	4	0	5
SPR_00374	tRNA links to Rfam database...	0.53	0.57	0.50	12	2826	12	5	7	0	9
SPR_00385	tRNA links to Rfam database...	0.56	0.60	0.52	12	4255	17	1	10	6	8
SPR_00386	tRNA links to Rfam database...	1.00	1.00	1.00	20	4166	4	0	0	4	0
SPR_00388	tRNA links to Rfam database...	0.84	0.86	0.82	18	4164	11	0	4	7	3
SPR_00389	tRNA links to Rfam database...	0.83	0.85	0.81	17	3984	10	1	3	6	3
SPR_00390	tRNA links to Rfam database...	0.58	0.62	0.54	13	4254	19	0	11	8	8
SPR_00391	tRNA links to Rfam database...	1.00	1.00	1.00	21	3807	6	0	0	6	0
SPR_00393	tRNA links to Rfam database...	1.00	1.00	1.00	20	3808	6	0	0	6	0
SPR_00394	tRNA links to Rfam database...	0.51	0.52	0.50	11	3633	15	3	8	4	10
SPR_00395	tRNA links to Rfam database...	0.50	0.57	0.44	12	3978	18	7	8	3	9
SPR_00398	-	-0.01	0.00	0.00	0	2192	21	2	17	2	13
SPR_00399	-	0.54	0.63	0.48	10	2464	12	6	5	1	6
SPR_00402	tRNA links to Rfam database...	0.73	0.76	0.70	16	2533	8	0	7	1	5
SPR_00412	tRNA links to Rfam database...	0.56	0.62	0.52	13	3630	14	2	10	2	8
SPR_00414	tRNA links to Rfam database...	1.00	1.00	1.00	21	3549	3	0	0	3	0
SPR_00415	tRNA links to Rfam database...	1.00	1.00	1.00	21	3549	3	0	0	3	0
SPR_00416	tRNA links to Rfam database...	0.70	0.76	0.64	16	3545	12	2	7	3	5
SPR_00417	tRNA links to Rfam database...	0.70	0.68	0.71	15	3549	9	0	6	3	7
SPR_00418	tRNA links to Rfam database...	0.51	0.55	0.48	12	3545	13	3	10	0	10
SPR_00426	tRNA links to Rfam database...	1.00	1.00	1.00	21	2982	3	0	0	3	0
SPR_00434	tRNA links to Rfam database...	0.70	0.71	0.68	15	2828	7	3	4	0	6
SPR_00435	tRNA links to Rfam database...	0.41	0.43	0.41	9	2828	13	0	13	0	12
SPR_00436	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	1	0	0	1	0
SPR_00437	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	1	0	0	1	0
SPR_00438	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	0	0	0	0	0
SPR_00439	tRNA links to Rfam database...	0.73	0.80	0.67	16	2677	9	4	4	1	4
SPR_00445	tRNA links to Rfam database...	0.77	0.85	0.71	17	2979	8	1	6	1	3
SPR_00452	tRNA links to Rfam database...	0.76	0.81	0.71	17	2826	7	0	7	0	4
SPR_00455	tRNA links to Rfam database...	0.73	0.76	0.70	16	2827	8	0	7	1	5
SPR_00456	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	1	0	0	1	0
SPR_00458	tRNA links to Rfam database...	0.76	0.80	0.73	16	2828	8	1	5	2	4
SPR_00459	tRNA links to Rfam database...	0.91	0.95	0.86	19	2753	3	2	1	0	1
SPR_00461	tRNA links to Rfam database...	0.74	0.68	0.81	13	2540	4	1	2	1	6
SPR_00462	tRNA links to Rfam database...	0.72	0.74	0.70	14	2395	7	3	3	1	5
SPR_00467	tRNA links to Rfam database...	0.45	0.50	0.42	10	2826	14	2	12	0	10
SPR_00476	tRNA links to Rfam database...	0.68	0.71	0.65	15	2752	8	0	8	0	6
SPR_00478	tRNA links to Rfam database...	0.23	0.24	0.23	5	2753	18	4	13	1	16
SPR_00479	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00481	tRNA links to Rfam database...	0.34	0.33	0.35	7	2755	15	0	13	2	14
SPR_00482	tRNA links to Rfam database...	1.00	1.00	1.00	21	2680	0	0	0	0	0
SPR_00483	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00487	tRNA links to Rfam database...	0.75	0.77	0.74	17	2678	6	0	6	0	5
SPR_00489	tRNA links to Rfam database...	1.00	1.00	1.00	21	2680	1	0	0	1	0
SPR_00493	tRNA links to Rfam database...	0.68	0.68	0.68	15	2753	7	2	5	0	7
SPR_00496	tRNA links to Rfam database...	0.68	0.71	0.65	15	2752	8	0	8	0	6
SPR_00497	tRNA links to Rfam database...	0.68	0.71	0.65	15	2752	8	0	8	0	6
SPR_00498	tRNA links to Rfam database...	0.83	0.85	0.81	17	2982	6	0	4	2	3
SPR_00502	tRNA links to Rfam database...	0.83	0.81	0.85	17	2906	4	0	3	1	4
SPR_00504	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	0	0	0	0	0
SPR_00505	tRNA links to Rfam database...	0.50	0.55	0.46	11	2902	13	6	7	0	9
SPR_00506	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00509	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00512	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00513	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00517	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	1	0	0	1	0
SPR_00518	tRNA links to Rfam database...	0.50	0.55	0.46	11	2902	13	3	10	0	9
SPR_00519	tRNA links to Rfam database...	0.93	0.95	0.91	20	2534	2	1	1	0	1
SPR_00520	tRNA links to Rfam database...	0.54	0.50	0.60	9	2541	6	2	4	0	9
SPR_00533	tRNA links to Rfam database...	0.53	0.57	0.50	12	2751	12	2	10	0	9
SPR_00541	tRNA links to Rfam database...	0.31	0.33	0.29	7	3462	19	0	17	2	14
SPR_00542	tRNA links to Rfam database...	0.78	0.86	0.72	18	3545	9	4	3	2	3
SPR_00544	tRNA links to Rfam database...	1.00	1.00	1.00	20	3550	3	0	0	3	0
SPR_00548	tRNA links to Rfam database...	0.80	0.86	0.75	18	3379	8	2	4	2	3
SPR_00550	tRNA links to Rfam database...	1.00	1.00	1.00	22	3806	5	0	0	5	0
SPR_00552	tRNA links to Rfam database...	0.23	0.26	0.22	5	2678	18	4	14	0	14
SPR_00557	tRNA links to Rfam database...	0.40	0.43	0.38	9	2826	15	1	14	0	12
SPR_00561	tRNA links to Rfam database...	0.39	0.43	0.36	9	2825	16	1	15	0	12
SPR_00590	tRNA links to Rfam database...	0.77	0.85	0.71	17	2979	8	1	6	1	3
SPR_00593	tRNA links to Rfam database...	0.97	0.95	1.00	18	2757	1	0	0	1	1
SPR_00595	tRNA links to Rfam database...	0.73	0.71	0.75	15	2755	5	2	3	0	6
SPR_00598	tRNA links to Rfam database...	0.76	0.81	0.71	17	2979	8	2	5	1	4
SPR_00610	tRNA links to Rfam database...	0.76	0.81	0.71	17	2532	8	2	5	1	4
SPR_00620	tRNA links to Rfam database...	0.73	0.76	0.70	16	2980	8	5	2	1	5
SPR_00629	-	0.67	0.60	0.75	9	1879	6	3	0	3	6
SPR_00632	tRNA links to Rfam database...	0.97	0.95	1.00	19	2537	0	0	0	0	1
SPR_00633	tRNA links to Rfam database...	0.90	0.85	0.94	17	2538	2	0	1	1	3
SPR_00721	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	1	0	0	1	0
SPR_00722	tRNA links to Rfam database...	0.76	0.80	0.73	16	2904	6	4	2	0	4
SPR_00750	tRNA links to Rfam database...	0.97	0.95	1.00	18	2538	1	0	0	1	1
SPR_00758	tRNA links to Rfam database...	0.74	0.76	0.73	16	2981	7	0	6	1	5
SPR_00760	tRNA links to Rfam database...	0.39	0.43	0.36	9	3545	17	1	15	1	12
SPR_00768	-	0.33	0.39	0.29	7	2056	17	7	10	0	11
SPR_00777	tRNA links to Rfam database...	0.50	0.55	0.46	11	2604	13	4	9	0	9
SPR_00810	tRNA links to Rfam database...	0.83	0.89	0.77	17	3548	10	3	2	5	2
SPR_00816	tRNA links to Rfam database...	1.00	1.00	1.00	20	3466	4	0	0	4	0
SPR_00832	-	0.31	0.27	0.36	4	1642	7	2	5	0	11
SPR_00867	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00868	tRNA links to Rfam database...	0.95	0.95	0.95	20	2905	2	0	1	1	1
SPR_00882	tRNA links to Rfam database...	0.66	0.70	0.64	14	2606	9	0	8	1	6
SPR_00912	tRNA links to Rfam database...	1.00	1.00	1.00	21	2982	2	0	0	2	0
SPR_00913	tRNA links to Rfam database...	0.29	0.33	0.27	7	2977	21	4	15	2	14
SPR_00932	tRNA links to Rfam database...	0.53	0.57	0.50	12	2826	12	1	11	0	9
SPR_00938	-	-0.01	0.00	0.00	0	1639	14	6	8	0	15
SPR_00943	tRNA links to Rfam database...	1.00	1.00	1.00	20	2536	3	0	0	3	0
SPR_00957	tRNA links to Rfam database...	0.74	0.76	0.73	16	2981	7	1	5	1	5
SPR_01040	tRNA links to Rfam database...	0.95	0.95	0.95	20	2754	2	0	1	1	1
SPR_01051	tRNA links to Rfam database...	0.73	0.76	0.70	16	2533	7	1	6	0	5
SPR_01088	tRNA links to Rfam database...	0.53	0.57	0.50	12	2902	12	4	8	0	9
SPR_01095	tRNA links to Rfam database...	0.40	0.43	0.38	9	2826	15	3	12	0	12
SPR_01103	-	0.22	0.20	0.25	3	1758	10	2	7	1	12
SPR_01106	tRNA links to Rfam database...	0.71	0.76	0.67	16	2532	8	3	5	0	5
SPR_01117	tRNA links to Rfam database...	0.76	0.76	0.76	16	2982	6	0	5	1	5
SPR_01143	tRNA links to Rfam database...	0.33	0.33	0.33	7	2535	14	1	13	0	14
SPR_01157	tRNA links to Rfam database...	0.95	0.95	0.95	20	2754	2	0	1	1	1
SRP_00005	-	0.12	0.13	0.13	3	3981	21	1	20	0	21
SRP_00008	Bacteria_small_SRP links to Rfam database...	0.69	0.72	0.67	18	2899	9	2	7	0	7
SRP_00042	Bacteria_small_SRP links to Rfam database...	0.30	0.32	0.30	8	3978	20	4	15	1	17
SRP_00046	Bacteria_small_SRP links to Rfam database...	0.24	0.25	0.24	8	4720	25	1	24	0	24
SRP_00083	-	0.30	0.30	0.30	9	4821	21	1	20	0	21
SRP_00094	Bacteria_small_SRP links to Rfam database...	0.38	0.42	0.34	10	4066	19	4	15	0	14
SRP_00095	Bacteria_small_SRP links to Rfam database...	0.37	0.40	0.34	10	3976	19	4	15	0	15
SRP_00101	-	0.78	0.80	0.77	20	3544	9	0	6	3	5
SRP_00107	Bacteria_small_SRP links to Rfam database...	0.12	0.16	0.10	3	3626	28	7	19	2	16
SRP_00121	Bacteria_small_SRP links to Rfam database...	0.42	0.44	0.41	11	4251	16	2	14	0	14
SRP_00132	Bacteria_small_SRP links to Rfam database...	0.34	0.34	0.33	10	4821	23	3	17	3	19
SRP_00137	Bacteria_small_SRP links to Rfam database...	0.37	0.40	0.36	10	4158	18	8	10	0	15
SRP_00138	-	0.51	0.52	0.50	14	3977	19	2	12	5	13
SRP_00139	-	-0.01	0.00	0.00	0	2131	16	6	8	2	12
SRP_00161	Bacteria_small_SRP links to Rfam database...	0.56	0.59	0.54	13	2826	11	4	7	0	9
SRP_00162	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	2903	23	4	19	0	23
SRP_00163	Bacteria_small_SRP links to Rfam database...	0.55	0.58	0.54	15	3458	13	2	11	0	11
SRP_00170	Bacteria_small_SRP links to Rfam database...	0.43	0.48	0.40	12	4065	19	5	13	1	13
SRP_00194	Bacteria_small_SRP links to Rfam database...	0.61	0.67	0.56	14	3215	13	3	8	2	7
SRP_00196	-	0.38	0.39	0.37	11	4626	22	1	18	3	17
SRP_00209	Bacteria_small_SRP links to Rfam database...	0.27	0.30	0.26	8	4625	23	2	21	0	19
SRP_00213	Bacteria_small_SRP links to Rfam database...	0.37	0.40	0.34	10	4157	19	2	17	0	15
SRP_00214	-	0.61	0.63	0.60	15	3056	10	1	9	0	9
SRP_00215	Bacteria_small_SRP links to Rfam database...	0.62	0.64	0.62	16	3214	10	3	7	0	9
SRP_00216	Bacteria_small_SRP links to Rfam database...	0.78	0.78	0.78	21	3376	7	3	3	1	6
SRP_00217	Bacteria_small_SRP links to Rfam database...	0.42	0.42	0.43	10	3298	14	3	10	1	14
SRP_00219	Bacteria_small_SRP links to Rfam database...	0.60	0.57	0.65	13	3301	8	2	5	1	10
SRP_00221	-	0.43	0.48	0.40	10	3378	15	4	11	0	11
SRP_00222	Bacteria_small_SRP links to Rfam database...	0.44	0.44	0.44	11	3056	15	4	10	1	14
SRP_00223	-	0.76	0.80	0.73	16	3381	7	2	4	1	4
SRP_00256	-	0.15	0.18	0.13	4	4246	28	8	20	0	18
SRP_00266	Bacteria_small_SRP links to Rfam database...	0.46	0.45	0.48	13	4629	14	2	12	0	16
SRP_00268	Bacteria_small_SRP links to Rfam database...	0.48	0.48	0.48	13	4159	14	4	10	0	14
SRP_00270	Bacteria_small_SRP links to Rfam database...	0.32	0.32	0.32	10	4625	21	3	18	0	21
SRP_00271	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	3215	25	1	24	0	24
SRP_00284	-	0.49	0.48	0.50	14	3713	14	1	13	0	15
SRP_00285	Bacteria_small_SRP links to Rfam database...	0.44	0.43	0.45	13	3712	16	2	14	0	17
SRP_00310	Bacteria_small_SRP links to Rfam database...	0.36	0.39	0.35	9	2900	17	2	15	0	14
SRP_00312	Bacteria_small_SRP links to Rfam database...	0.39	0.41	0.38	11	4157	18	4	14	0	16
SRP_00315	Bacteria_small_SRP links to Rfam database...	0.45	0.48	0.42	11	2900	15	2	13	0	12
SRP_00318	Bacteria_small_SRP links to Rfam database...	0.55	0.57	0.54	13	2979	11	2	9	0	10
SRP_00325	Bacteria_small_SRP links to Rfam database...	0.75	0.73	0.77	24	4340	7	0	7	0	9
SRP_00341	Bacteria_small_SRP links to Rfam database...	0.10	0.10	0.11	3	4726	24	2	22	0	28
SRP_00342	Bacteria_small_SRP links to Rfam database...	0.32	0.32	0.32	8	3980	17	5	12	0	17
SRP_00350	Bacteria_small_SRP links to Rfam database...	0.32	0.33	0.31	9	3887	21	1	19	1	18
SRP_00363	Bacteria_small_SRP links to Rfam database...	0.69	0.70	0.68	21	4722	12	3	7	2	9
SRP_00365	Bacteria_small_SRP links to Rfam database...	0.44	0.41	0.48	11	3380	12	1	11	0	16
SRP_00383	Bacteria_small_SRP links to Rfam database...	0.12	0.13	0.12	3	3215	22	3	19	0	21

^top

Performance of Alterna - scored lower in this pairwise comparison

1. Total counts & total scores for Alterna

Total Base Pair Counts
Total TP	6749
Total TN	1334686
Total FP	5874
Total FP CONTRA	848
Total FP INCONS	4333
Total FP COMP	693
Total FN	5599

Total Scores
MCC	0.552
Average MCC ± 95% Confidence Intervals	0.579 ± 0.025
Sensitivity	0.547
Positive Predictive Value	0.566
Nr of predictions	693

^top

2. Individual counts for Alterna [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
NDB_00014	-	0.89	0.80	1.00	8	182	0	0	0	0	2
NDB_00015	-	0.38	0.40	0.40	4	266	6	0	6	0	6
NDB_00016	-	0.91	0.83	1.00	10	266	0	0	0	0	2
NDB_00047	-	0.91	0.83	1.00	10	266	0	0	0	0	2
NDB_00048	-	-0.02	0.00	0.00	0	1514	26	0	26	0	28
NDB_00049	-	0.92	0.85	1.00	11	314	0	0	0	0	2
NDB_00051	tRNA links to Rfam database...	0.71	0.67	0.76	16	2754	5	3	2	0	8
PDB_00001	-	-0.02	0.00	0.00	0	272	4	0	4	0	12
PDB_00002	-	1.00	1.00	1.00	8	202	0	0	0	0	0
PDB_00003	-	0.81	0.67	1.00	8	343	0	0	0	0	4
PDB_00004	-	0.86	0.74	1.00	14	806	0	0	0	0	5
PDB_00005	Tymo_tRNA-like links to Rfam database...	0.88	0.79	1.00	11	935	0	0	0	0	3
PDB_00006	-	1.00	1.00	1.00	14	689	0	0	0	0	0
PDB_00011	-	0.91	0.83	1.00	10	266	0	0	0	0	2
PDB_00012	mir-TAR links to Rfam database...	1.00	1.00	1.00	7	399	3	0	0	3	0
PDB_00013	-	1.00	1.00	1.00	10	396	1	0	0	1	0
PDB_00017	-	0.66	0.60	0.75	9	691	3	0	3	0	6
PDB_00018	-	0.20	0.20	0.22	4	1017	14	2	12	0	16
PDB_00019	-	0.45	0.50	0.44	4	244	5	0	5	0	4
PDB_00020	-	0.38	0.35	0.44	7	764	9	0	9	0	13
PDB_00021	-	1.00	1.00	1.00	8	182	0	0	0	0	0
PDB_00022	-	0.94	0.89	1.00	8	245	0	0	0	0	1
PDB_00032	-	0.78	0.73	0.85	11	890	3	0	2	1	4
PDB_00034	-	0.66	0.58	0.78	7	369	2	0	2	0	5
PDB_00035	-	0.94	0.89	1.00	8	202	0	0	0	0	1
PDB_00036	-	-0.01	0.00	0.00	0	3459	27	1	26	0	27
PDB_00040	-	0.83	0.70	1.00	7	269	0	0	0	0	3
PDB_00041	-	0.70	0.50	1.00	6	624	0	0	0	0	6
PDB_00043	-	0.69	0.62	0.80	8	425	2	0	2	0	5
PDB_00048	-	1.00	1.00	1.00	9	291	1	0	0	1	0
PDB_00049	-	0.83	0.70	1.00	7	224	0	0	0	0	3
PDB_00053	-	0.73	0.55	1.00	6	429	0	0	0	0	5
PDB_00054	-	-0.04	0.00	0.00	0	184	6	0	6	0	10
PDB_00056	-	0.11	0.13	0.14	2	616	12	0	12	0	14
PDB_00057	-	0.90	0.90	0.90	9	341	2	0	1	1	1
PDB_00065	-	0.83	0.70	1.00	7	399	1	0	0	1	3
PDB_00070	tRNA links to Rfam database...	0.62	0.63	0.63	15	2826	9	1	8	0	9
PDB_00074	-	-0.03	0.00	0.00	0	370	8	0	8	0	12
PDB_00081	-	0.94	0.89	1.00	8	182	0	0	0	0	1
PDB_00088	-	0.86	0.75	1.00	9	426	1	0	0	1	3
PDB_00096	-	0.81	0.67	1.00	8	317	0	0	0	0	4
PDB_00098	-	0.81	0.67	1.00	4	227	0	0	0	0	2
PDB_00102	-	0.93	0.88	1.00	7	224	0	0	0	0	1
PDB_00104	-	-0.02	0.00	0.00	0	616	14	0	14	0	16
PDB_00107	-	0.95	0.91	1.00	10	455	1	0	0	1	1
PDB_00108	-	1.00	1.00	1.00	7	203	0	0	0	0	0
PDB_00110	-	1.00	1.00	1.00	7	246	0	0	0	0	0
PDB_00113	-	0.94	0.89	1.00	8	223	0	0	0	0	1
PDB_00115	-	-0.02	0.00	0.00	0	549	12	0	12	0	16
PDB_00116	-	0.54	0.50	0.60	3	226	2	0	2	0	3
PDB_00119	-	0.95	0.90	1.00	9	244	0	0	0	0	1
PDB_00120	-	0.95	0.90	1.00	9	222	0	0	0	0	1
PDB_00121	-	0.95	0.90	1.00	9	222	0	0	0	0	1
PDB_00122	-	0.91	0.83	1.00	10	290	0	0	0	0	2
PDB_00123	-	-0.01	0.00	0.00	0	4151	35	0	35	0	36
PDB_00124	-	-0.02	0.00	0.00	0	488	8	2	6	0	10
PDB_00125	-	-0.03	0.00	0.00	0	225	6	0	6	0	10
PDB_00128	-	0.80	0.71	0.91	10	485	1	0	1	0	4
PDB_00130	-	1.00	1.00	1.00	6	270	2	0	0	2	0
PDB_00132	-	0.86	0.75	1.00	9	426	0	0	0	0	3
PDB_00134	-	0.79	0.63	1.00	5	373	0	0	0	0	3
PDB_00136	-	0.90	0.85	0.96	22	2392	3	0	1	2	4
PDB_00137	-	0.87	0.77	1.00	10	396	0	0	0	0	3
PDB_00138	-	0.79	0.63	1.00	5	373	0	0	0	0	3
PDB_00142	-	0.91	0.83	1.00	10	425	0	0	0	0	2
PDB_00149	-	0.89	0.80	1.00	12	691	0	0	0	0	3
PDB_00150	-	0.95	0.90	1.00	9	291	1	0	0	1	1
PDB_00152	-	0.93	0.88	1.00	7	183	0	0	0	0	1
PDB_00153	-	0.95	0.90	1.00	9	244	0	0	0	0	1
PDB_00155	-	0.52	0.50	0.57	4	318	3	0	3	0	4
PDB_00157	-	-0.01	0.00	0.00	0	3293	30	2	26	2	29
PDB_00158	-	0.77	0.60	1.00	12	849	0	0	0	0	8
PDB_00159	-	0.79	0.64	1.00	7	344	1	0	0	1	4
PDB_00160	-	0.94	0.89	1.00	8	268	0	0	0	0	1
PDB_00168	-	0.81	0.67	1.00	4	296	1	0	0	1	2
PDB_00169	-	0.43	0.40	0.50	4	223	4	0	4	0	6
PDB_00170	-	0.93	0.88	1.00	14	616	0	0	0	0	2
PDB_00171	-	0.70	0.50	1.00	6	429	0	0	0	0	6
PDB_00174	-	0.90	0.82	1.00	18	1017	0	0	0	0	4
PDB_00175	-	-0.01	0.00	0.00	0	4538	22	0	22	0	36
PDB_00178	-	0.68	0.55	0.86	6	521	2	0	1	1	5
PDB_00181	-	0.88	0.78	1.00	7	224	0	0	0	0	2
PDB_00182	-	0.88	0.78	1.00	7	246	0	0	0	0	2
PDB_00183	-	0.24	0.22	0.29	5	1468	12	0	12	0	18
PDB_00184	-	0.87	0.77	1.00	10	551	0	0	0	0	3
PDB_00185	-	0.38	0.36	0.42	10	2902	15	0	14	1	18
PDB_00190	-	0.95	0.90	1.00	9	222	0	0	0	0	1
PDB_00192	-	0.17	0.14	0.24	5	3219	16	0	16	0	31
PDB_00195	-	-0.01	0.00	0.00	0	3452	34	0	34	0	42
PDB_00196	-	0.92	0.86	1.00	24	1572	0	0	0	0	4
PDB_00197	-	1.00	1.00	1.00	7	293	3	0	0	3	0
PDB_00200	-	0.81	0.67	1.00	6	204	0	0	0	0	3
PDB_00201	-	0.77	0.60	1.00	6	319	0	0	0	0	4
PDB_00202	-	0.89	0.86	0.92	12	548	2	0	1	1	2
PDB_00203	-	0.96	0.92	1.00	12	549	0	0	0	0	1
PDB_00205	-	0.84	0.71	1.00	10	425	0	0	0	0	4
PDB_00206	-	0.86	0.75	1.00	6	270	0	0	0	0	2
PDB_00207	-	0.92	0.86	1.00	12	366	0	0	0	0	2
PDB_00209	-	0.68	0.55	0.86	6	554	1	1	0	0	5
PDB_00211	-	0.89	0.80	1.00	8	182	0	0	0	0	2
PDB_00214	-	0.73	0.55	1.00	6	400	0	0	0	0	5
PDB_00215	-	-0.02	0.00	0.00	0	1106	22	0	22	0	24
PDB_00219	-	1.00	1.00	1.00	7	203	0	0	0	0	0
PDB_00221	-	0.88	0.78	1.00	7	246	0	0	0	0	2
PDB_00224	-	0.93	0.88	1.00	7	183	0	0	0	0	1
PDB_00229	tRNA links to Rfam database...	0.91	0.87	0.95	20	2754	1	0	1	0	3
PDB_00234	-	-0.04	0.00	0.00	0	268	8	0	8	0	12
PDB_00236	-	-0.02	0.00	0.00	0	1110	18	0	18	0	24
PDB_00237	-	0.70	0.67	0.75	6	370	3	0	2	1	3
PDB_00239	-	0.33	0.28	0.42	5	808	7	1	6	0	13
PDB_00243	-	0.51	0.50	0.55	6	619	5	0	5	0	6
PDB_00248	-	0.91	0.83	1.00	10	266	0	0	0	0	2
PDB_00249	-	-0.02	0.00	0.00	0	273	3	0	3	0	11
PDB_00250	-	0.85	0.76	0.95	19	1750	3	0	1	2	6
PDB_00252	-	-0.02	0.00	0.00	0	765	16	2	13	1	15
PDB_00254	-	-0.04	0.00	0.00	0	266	10	0	10	0	12
PDB_00256	-	-0.02	0.00	0.00	0	319	6	6	0	0	4
PDB_00257	-	0.95	0.91	1.00	10	341	0	0	0	0	1
PDB_00258	-	1.00	1.00	1.00	8	245	0	0	0	0	0
PDB_00261	-	0.86	0.75	1.00	12	484	0	0	0	0	4
PDB_00262	-	0.25	0.25	0.27	6	1106	16	0	16	0	18
PDB_00264	-	-0.01	0.00	0.00	0	1113	15	0	15	0	18
PDB_00267	-	-0.03	0.00	0.00	0	366	12	0	12	0	14
PDB_00286	-	-0.03	0.00	0.00	0	184	8	0	6	2	6
PDB_00293	-	-0.01	0.00	0.00	0	1111	17	8	9	0	12
PDB_00312	-	1.00	1.00	1.00	9	426	0	0	0	0	0
PDB_00313	tRNA links to Rfam database...	0.78	0.74	0.82	14	2684	7	0	3	4	5
PDB_00317	-	1.00	1.00	1.00	10	368	0	0	0	0	0
PDB_00326	-	0.53	0.46	0.62	13	3720	9	0	8	1	15
PDB_00327	tRNA links to Rfam database...	0.31	0.30	0.32	7	3059	15	0	15	0	16
PDB_00339	-	0.83	0.69	1.00	11	655	0	0	0	0	5
PDB_00341	-	0.52	0.44	0.64	7	692	4	0	4	0	9
PDB_00342	-	-0.02	0.00	0.00	0	762	18	0	18	0	10
PDB_00343	-	0.92	0.86	1.00	18	1578	1	0	0	1	3
PDB_00347	-	0.81	0.75	0.88	15	1159	2	0	2	0	5
PDB_00349	-	0.92	0.86	1.00	12	934	0	0	0	0	2
PDB_00351	-	-0.02	0.00	0.00	0	554	7	0	7	0	12
PDB_00352	-	0.92	0.84	1.00	16	1209	0	0	0	0	3
PDB_00357	-	-0.01	0.00	0.00	0	770	10	4	6	0	10
PDB_00362	tRNA links to Rfam database...	0.93	0.91	0.95	20	2829	1	0	1	0	2
PDB_00365	-	0.96	0.93	1.00	13	422	0	0	0	0	1
PDB_00371	-	0.74	0.67	0.83	10	549	2	0	2	0	5
PDB_00377	-	1.00	1.00	1.00	12	516	0	0	0	0	0
PDB_00378	-	0.88	0.79	1.00	11	692	0	0	0	0	3
PDB_00392	tRNA links to Rfam database...	0.65	0.67	0.64	14	2828	8	2	6	0	7
PDB_00400	-	-0.01	0.00	0.00	0	3135	25	0	25	0	34
PDB_00402	tRNA links to Rfam database...	0.30	0.30	0.30	7	2752	16	0	16	0	16
PDB_00411	-	0.85	0.73	1.00	11	584	0	0	0	0	4
PDB_00420	-	0.66	0.60	0.75	6	488	5	0	2	3	4
PDB_00425	tRNA links to Rfam database...	0.65	0.64	0.67	14	2680	7	2	5	0	8
PDB_00430	tRNA links to Rfam database...	0.68	0.68	0.68	17	3215	8	3	5	0	8
PDB_00431	tRNA links to Rfam database...	0.47	0.45	0.50	9	2193	10	1	8	1	11
PDB_00454	-	-0.01	0.00	0.00	0	2669	32	0	32	0	32
PDB_00474	tRNA links to Rfam database...	0.53	0.52	0.55	12	2679	10	2	8	0	11
PDB_00481	-	-0.01	0.00	0.00	0	1873	18	0	18	0	26
PDB_00513	-	1.00	1.00	1.00	7	224	0	0	0	0	0
PDB_00522	-	0.56	0.56	0.59	10	1111	7	0	7	0	8
PDB_00526	-	-0.01	0.00	0.00	0	296	4	1	3	0	3
PDB_00527	-	-0.01	0.00	0.00	0	296	4	1	3	0	5
PDB_00537	-	0.82	0.78	0.88	7	398	3	0	1	2	2
PDB_00553	mir-TAR links to Rfam database...	1.00	1.00	1.00	11	454	0	0	0	0	0
PDB_00570	-	-0.01	0.00	0.00	0	2268	10	1	9	0	22
PDB_00571	tRNA links to Rfam database...	0.41	0.40	0.43	10	3298	13	3	10	0	15
PDB_00584	-	0.25	0.24	0.29	4	1471	11	0	10	1	13
PDB_00599	-	0.96	0.93	1.00	13	548	0	0	0	0	1
PDB_00603	-	0.95	0.90	1.00	9	244	0	0	0	0	1
PDB_00611	-	0.35	0.36	0.36	4	769	7	1	6	0	7
PDB_00617	-	0.95	0.90	1.00	9	267	0	0	0	0	1
PDB_00627	-	0.72	0.71	0.75	12	1637	6	0	4	2	5
PDB_00629	-	-0.01	0.00	0.00	0	1635	18	2	16	0	23
PDB_00637	-	0.23	0.24	0.23	5	2324	18	2	15	1	16
PDB_00648	-	-0.02	0.00	0.00	0	845	16	4	12	0	13
PDB_00663	-	-0.01	0.00	0.00	0	930	19	2	14	3	10
PDB_00667	tRNA links to Rfam database...	0.70	0.68	0.71	15	2829	8	2	4	2	7
PDB_00681	-	-0.01	0.00	0.00	0	1256	19	2	17	0	19
PDB_00682	-	-0.03	0.00	0.00	0	482	14	0	14	0	16
PDB_00686	-	0.94	0.89	1.00	17	686	0	0	0	0	2
PDB_00687	-	0.91	0.83	1.00	10	620	0	0	0	0	2
PDB_00692	-	-0.01	0.00	0.00	0	1214	11	0	11	0	20
PDB_00693	-	0.88	0.82	0.93	14	1161	2	0	1	1	3
PDB_00698	-	0.94	0.89	1.00	17	844	0	0	0	0	2
PDB_00702	-	0.80	0.78	0.82	28	4337	8	0	6	2	8
PDB_00705	-	0.86	0.75	1.00	6	247	0	0	0	0	2
PDB_00709	-	-0.02	0.00	0.00	0	766	14	0	14	0	16
PDB_00710	-	-0.02	0.00	0.00	0	768	12	0	12	0	16
PDB_00713	-	-0.01	0.00	0.00	0	1997	19	0	19	0	21
PDB_00716	HDV_ribozyme links to Rfam database...	-0.01	0.00	0.00	0	2680	21	3	18	0	23
PDB_00724	-	-0.01	0.00	0.00	0	2122	23	0	23	0	29
PDB_00725	-	0.73	0.53	1.00	8	587	0	0	0	0	7
PDB_00726	-	0.88	0.78	1.00	7	344	1	0	0	1	2
PDB_00727	-	1.00	1.00	1.00	7	554	3	0	0	3	0
PDB_00728	-	0.97	0.93	1.00	14	482	0	0	0	0	1
PDB_00732	-	-0.01	0.00	0.00	0	2974	29	0	29	0	30
PDB_00733	-	0.23	0.23	0.23	7	2896	24	2	21	1	23
PDB_00734	-	0.83	0.70	1.00	7	224	0	0	0	0	3
PDB_00737	-	0.85	0.73	1.00	8	343	0	0	0	0	3
PDB_00740	-	0.79	0.64	1.00	7	224	0	0	0	0	4
PDB_00741	Entero_5_CRE links to Rfam database...	0.87	0.76	1.00	13	690	0	0	0	0	4
PDB_00746	-	0.95	0.89	1.00	34	4719	2	0	0	2	4
PDB_00751	-	0.87	0.77	1.00	10	585	2	0	0	2	3
PDB_00754	-	0.20	0.25	0.18	3	1468	16	4	10	2	9
PDB_00767	-	-0.01	0.00	0.00	0	2185	26	8	18	0	20
PDB_00800	-	0.30	0.31	0.30	9	2050	21	1	20	0	20
PDB_00806	-	0.69	0.48	1.00	12	1818	0	0	0	0	13
PDB_00807	-	0.69	0.48	1.00	11	1880	2	0	0	2	12
PDB_00809	-	0.88	0.79	1.00	11	485	0	0	0	0	3
PDB_00810	s2m links to Rfam database...	0.64	0.41	1.00	7	1074	1	0	0	1	10
PDB_00815	-	0.94	0.89	1.00	8	622	3	0	0	3	1
PDB_00823	-	-0.03	0.00	0.00	0	185	5	0	5	0	9
PDB_00828	Purine links to Rfam database...	0.88	0.78	1.00	21	2464	0	0	0	0	6
PDB_00829	Purine links to Rfam database...	0.77	0.71	0.85	17	2258	3	2	1	0	7
PDB_00842	-	0.79	0.63	1.00	5	373	0	0	0	0	3
PDB_00851	-	0.10	0.10	0.13	4	4721	28	0	28	0	37
PDB_00855	-	0.90	0.90	0.90	9	455	2	0	1	1	1
PDB_00857	-	-0.01	0.00	0.00	0	1068	13	0	13	0	15
PDB_00863	-	0.56	0.50	0.64	9	976	5	0	5	0	9
PDB_00865	-	0.96	0.92	1.00	11	340	0	0	0	0	1
PDB_00868	-	-0.01	0.00	0.00	0	1309	17	4	13	0	14
PDB_00870	-	-0.02	0.00	0.00	0	1109	19	0	19	0	16
PDB_00871	-	-0.02	0.00	0.00	0	1106	22	0	22	0	24
PDB_00873	-	-0.01	0.00	0.00	0	4514	46	0	46	0	48
PDB_00874	-	0.09	0.10	0.11	2	928	16	2	14	0	18
PDB_00876	HIV_FE links to Rfam database...	0.97	0.95	1.00	19	971	0	0	0	0	1
PDB_00878	-	0.69	0.67	0.73	8	485	3	0	3	0	4
PDB_00883	-	1.00	1.00	1.00	12	618	0	0	0	0	0
PDB_00885	-	0.97	0.94	1.00	17	803	0	0	0	0	1
PDB_00886	-	-0.01	0.00	0.00	0	4148	38	0	38	0	40
PDB_00890	-	-0.02	0.00	0.00	0	690	13	2	11	0	14
PDB_00891	-	-0.02	0.00	0.00	0	928	18	5	13	0	15
PDB_00892	-	-0.01	0.00	0.00	0	2534	22	4	18	0	15
PDB_00918	-	0.75	0.57	1.00	4	321	0	0	0	0	3
PDB_00923	-	1.00	1.00	1.00	6	184	0	0	0	0	0
PDB_00924	-	0.91	0.89	0.94	32	3621	4	0	2	2	4
PDB_00925	-	0.95	0.91	1.00	10	341	1	0	0	1	1
PDB_00928	-	0.66	0.63	0.71	5	293	2	0	2	0	3
PDB_00929	-	-0.02	0.00	0.00	0	762	18	0	18	0	20
PDB_00932	-	0.28	0.31	0.29	4	806	10	1	9	0	9
PDB_00937	-	0.94	0.89	1.00	16	614	0	0	0	0	2
PDB_00943	-	0.27	0.27	0.29	4	1417	10	2	8	0	11
PDB_00945	-	0.84	0.80	0.89	8	456	2	0	1	1	2
PDB_00960	-	-0.03	0.00	0.00	0	394	12	2	10	0	10
PDB_00961	-	1.00	1.00	1.00	10	1760	12	0	0	12	0
PDB_00964	-	1.00	1.00	1.00	9	621	4	0	0	4	0
PDB_00966	-	-0.03	0.00	0.00	0	244	9	2	7	0	7
PDB_00973	-	-0.02	0.00	0.00	0	345	6	2	4	0	8
PDB_00974	-	-0.02	0.00	0.00	0	370	8	2	6	0	9
PDB_00986	-	0.88	0.79	1.00	11	424	0	0	0	0	3
PDB_00987	-	0.79	0.63	1.00	10	551	0	0	0	0	6
PDB_00989	-	0.91	0.83	1.00	30	2973	0	0	0	0	6
PDB_01001	tRNA links to Rfam database...	0.52	0.56	0.50	10	2125	10	3	7	0	8
PDB_01002	tRNA links to Rfam database...	0.48	0.52	0.44	11	2750	14	2	12	0	10
PDB_01008	-	1.00	1.00	1.00	12	583	0	0	0	0	0
PDB_01009	tRNA links to Rfam database...	0.86	0.86	0.86	18	2464	6	0	3	3	3
PDB_01017	-	-0.03	0.00	0.00	0	422	13	0	13	0	14
PDB_01019	-	-0.03	0.00	0.00	0	422	13	0	13	0	14
PDB_01020	Purine links to Rfam database...	0.76	0.70	0.84	16	2259	4	2	1	1	7
PDB_01025	-	1.00	1.00	1.00	9	244	0	0	0	0	0
PDB_01035	-	-0.02	0.00	0.00	0	1517	23	0	23	0	26
PDB_01040	-	0.30	0.30	0.32	6	1109	13	0	13	0	14
PDB_01044	-	1.00	1.00	1.00	16	930	3	0	0	3	0
PDB_01045	-	0.98	0.96	1.00	22	1203	1	0	0	1	1
PDB_01050	UnaL2 links to Rfam database...	0.92	0.85	1.00	11	619	2	0	0	2	2
PDB_01051	Telomerase-cil links to Rfam database...	0.55	0.54	0.58	7	891	6	1	4	1	6
PDB_01053	tRNA links to Rfam database...	1.00	1.00	1.00	16	1362	0	0	0	0	0
PDB_01056	-	0.94	0.89	1.00	8	245	1	0	0	1	1
PDB_01057	-	1.00	1.00	1.00	8	202	0	0	0	0	0
PDB_01059	-	0.49	0.43	0.60	3	226	2	2	0	0	4
PDB_01060	-	-0.01	0.00	0.00	0	1986	30	0	30	0	21
PDB_01061	-	0.14	0.15	0.16	6	3122	32	0	32	0	34
PDB_01062	-	0.51	0.50	0.53	8	931	7	0	7	0	8
PDB_01065	-	-0.03	0.00	0.00	0	225	6	0	6	0	10
PDB_01071	-	0.48	0.38	0.63	5	398	3	0	3	0	8
PDB_01073	SAM links to Rfam database...	0.52	0.47	0.57	16	4343	13	2	10	1	18
PDB_01074	-	-0.01	0.00	0.00	0	2746	29	3	26	0	25
PDB_01075	-	0.86	0.75	1.00	24	2391	0	0	0	0	8
PDB_01077	-	0.65	0.63	0.67	12	1935	7	0	6	1	7
PDB_01084	-	1.00	1.00	1.00	7	224	0	0	0	0	0
PDB_01097	-	0.93	0.88	1.00	7	203	0	0	0	0	1
PDB_01099	-	0.85	0.73	1.00	8	268	0	0	0	0	3
PDB_01100	-	0.67	0.50	0.92	11	1473	1	0	1	0	11
PDB_01108	-	1.00	1.00	1.00	9	222	0	0	0	0	0
PDB_01114	TPP links to Rfam database...	0.56	0.48	0.65	13	2830	7	0	7	0	14
PDB_01117	-	0.84	0.71	1.00	12	768	0	0	0	0	5
PDB_01118	-	0.92	0.84	1.00	16	1580	3	0	0	3	3
PDB_01119	-	0.92	0.86	1.00	12	618	0	0	0	0	2
PDB_01126	-	0.48	0.50	0.47	14	3051	18	2	14	2	14
PDB_01127	-	-0.01	0.00	0.00	0	976	16	0	14	2	14
PDB_01128	-	0.65	0.59	0.73	16	2753	6	0	6	0	11
PDB_01130	-	-0.01	0.00	0.00	0	1749	21	4	17	0	20
PDB_01133	-	1.00	1.00	1.00	10	341	0	0	0	0	0
PDB_01135	-	-0.02	0.00	0.00	0	397	9	2	7	0	9
PDB_01137	-	-0.02	0.00	0.00	0	319	6	0	6	0	8
PDB_01138	-	-0.02	0.00	0.00	0	316	9	0	9	0	7
PDB_01145	-	1.00	1.00	1.00	14	766	2	0	0	2	0
PDB_01150	-	0.93	0.88	1.00	7	224	0	0	0	0	1
PDB_01152	HIV_FS2 links to Rfam database...	0.96	0.93	1.00	13	548	0	0	0	0	1
PDB_01154	-	0.90	0.82	1.00	9	397	0	0	0	0	2
PDB_01156	-	-0.01	0.00	0.00	0	3799	29	0	29	0	35
PDB_01160	-	0.34	0.35	0.33	7	2059	14	2	12	0	13
PDB_01162	-	-0.01	0.00	0.00	0	1529	17	0	11	6	9
PDB_01163	-	0.98	0.95	1.00	21	1014	0	0	0	0	1
PDB_01164	-	0.96	0.92	1.00	24	1516	0	0	0	0	2
PDB_01167	-	0.93	0.88	1.00	7	183	0	0	0	0	1
PDB_01168	-	0.86	0.75	1.00	6	184	0	0	0	0	2
PDB_01178	-	0.69	0.64	0.75	9	516	3	0	3	0	5
PDB_01194	-	-0.02	0.00	0.00	0	488	8	0	8	0	15
PDB_01199	-	0.91	0.83	1.00	20	2125	0	0	0	0	4
PDB_01201	-	0.85	0.73	1.00	16	1112	0	0	0	0	6
PDB_01203	-	0.74	0.68	0.81	13	1160	3	2	1	0	6
PDB_01205	-	-0.02	0.00	0.00	0	1015	20	4	16	0	18
PDB_01208	-	0.81	0.75	0.88	15	1159	2	0	2	0	5
PDB_01209	-	0.81	0.75	0.88	15	1159	2	0	2	0	5
PDB_01212	-	0.81	0.75	0.88	15	1159	2	0	2	0	5
PDB_01213	-	0.79	0.72	0.87	13	1066	2	0	2	0	5
PDB_01216	-	0.81	0.75	0.88	15	1159	2	0	2	0	5
PDB_01219	-	-0.02	0.00	0.00	0	932	14	0	14	0	20
PDB_01237	-	1.00	1.00	1.00	8	268	0	0	0	0	0
PDB_01251	-	-0.03	0.00	0.00	0	315	10	0	10	0	13
PDB_01260	-	-0.01	0.00	0.00	0	1809	21	0	21	0	25
PDB_01262	-	0.78	0.63	1.00	5	185	0	0	0	0	3
PDB_01281	-	-0.03	0.00	0.00	0	366	12	0	12	0	14
PDB_01299	-	0.74	0.67	0.83	10	891	2	1	1	0	5
PDB_01313	-	-0.03	0.00	0.00	0	270	6	4	2	0	8
PDB_01325	-	0.91	0.83	1.00	10	266	0	0	0	0	2
PDB_01332	-	0.88	0.78	1.00	7	344	0	0	0	0	2
PDB_01337	-	-0.02	0.00	0.00	0	552	9	1	8	0	11
PDB_01338	-	-0.03	0.00	0.00	0	268	8	2	6	0	8
PDB_01340	-	1.00	1.00	1.00	8	292	0	0	0	0	0
RFA_00389	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	2	0	0	2	1
RFA_00390	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00391	Hammerhead_3 links to Rfam database...	0.80	0.80	0.80	12	1416	5	0	3	2	3
RFA_00396	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	2	0	0	2	1
RFA_00402	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	0	0	0	0	0
RFA_00409	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	2	0	0	2	1
RFA_00416	Hammerhead_3 links to Rfam database...	0.93	0.93	0.93	14	1470	4	0	1	3	1
RFA_00420	-	1.00	1.00	1.00	15	3306	14	0	0	14	0
RFA_00425	Hammerhead_3 links to Rfam database...	0.62	0.67	0.59	10	1636	8	2	5	1	5
RFA_00427	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1471	2	0	0	2	1
RFA_00429	-	1.00	1.00	1.00	9	771	3	0	0	3	0
RFA_00433	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00434	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00436	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00440	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1471	2	0	0	2	1
RFA_00442	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00444	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1526	1	0	0	1	1
RFA_00446	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1471	2	0	0	2	1
RFA_00449	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1471	2	0	0	2	1
RFA_00583	Y_RNA links to Rfam database...	0.93	0.93	0.93	14	4935	17	0	1	16	1
RFA_00584	Y_RNA links to Rfam database...	0.87	0.87	0.87	13	2911	16	0	2	14	2
RFA_00585	Y_RNA links to Rfam database...	0.93	0.93	0.93	14	4836	15	0	1	14	1
RFA_00586	Y_RNA links to Rfam database...	0.97	0.93	1.00	14	3902	8	0	0	8	1
RFA_00587	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4836	14	0	0	14	0
RFA_00588	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4545	13	0	0	13	0
RFA_00589	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4356	19	0	0	19	0
RFA_00594	Y_RNA links to Rfam database...	0.90	0.87	0.93	13	2761	12	0	1	11	2
RFA_00632	HDV_ribozyme links to Rfam database...	0.24	0.25	0.23	7	4065	23	3	20	0	21
RFA_00636	HDV_ribozyme links to Rfam database...	0.50	0.46	0.54	13	3981	13	3	8	2	15
RFA_00642	Vimentin3 links to Rfam database...	0.16	0.17	0.17	3	2908	15	0	15	0	15
RFA_00643	Vimentin3 links to Rfam database...	0.24	0.22	0.27	4	2196	12	2	9	1	14
RFA_00644	Vimentin3 links to Rfam database...	-0.01	0.00	0.00	0	2682	19	3	16	0	18
RFA_00645	Vimentin3 links to Rfam database...	-0.01	0.00	0.00	0	2397	18	5	13	0	18
RFA_00649	Vimentin3 links to Rfam database...	0.31	0.33	0.30	6	2125	14	0	14	0	12
RFA_00651	Vimentin3 links to Rfam database...	0.35	0.33	0.38	6	2064	10	1	9	0	12
RFA_00653	Vimentin3 links to Rfam database...	0.34	0.33	0.35	6	2128	14	2	9	3	12
RFA_00654	Vimentin3 links to Rfam database...	-0.01	0.00	0.00	0	2399	16	2	14	0	18
RFA_00658	Hammerhead_1 links to Rfam database...	0.69	0.64	0.75	9	1116	5	0	3	2	5
RFA_00659	Hammerhead_1 links to Rfam database...	0.30	0.29	0.33	4	1116	10	0	8	2	10
RFA_00664	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	980	10	0	10	0	14
RFA_00667	Hammerhead_1 links to Rfam database...	0.29	0.29	0.31	4	977	10	1	8	1	10
RFA_00668	Hammerhead_1 links to Rfam database...	0.60	0.43	0.86	6	983	1	0	1	0	8
RFA_00672	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	895	9	0	8	1	13
RFA_00673	Hammerhead_1 links to Rfam database...	0.42	0.36	0.50	5	1118	6	0	5	1	9
RFA_00674	Hammerhead_1 links to Rfam database...	0.74	0.71	0.77	10	1115	4	0	3	1	4
RFA_00675	Hammerhead_1 links to Rfam database...	0.29	0.29	0.31	4	977	9	1	8	0	10
RFA_00677	Hammerhead_1 links to Rfam database...	0.59	0.57	0.62	8	977	7	0	5	2	6
RFA_00678	Hammerhead_1 links to Rfam database...	0.80	0.64	1.00	9	937	0	0	0	0	5
RFA_00680	Hammerhead_1 links to Rfam database...	0.74	0.71	0.77	10	1115	6	0	3	3	4
RFA_00683	-	-0.01	0.00	0.00	0	1024	11	0	11	0	14
RFA_00684	Hammerhead_1 links to Rfam database...	0.77	0.71	0.83	10	978	4	0	2	2	4
RFA_00685	Hammerhead_1 links to Rfam database...	0.42	0.36	0.50	5	980	6	0	5	1	9
RFA_00703	Hammerhead_1 links to Rfam database...	0.69	0.64	0.75	9	4266	16	1	2	13	5
RFA_00704	Hammerhead_1 links to Rfam database...	0.36	0.36	0.38	5	977	9	0	8	1	9
RFA_00705	Hammerhead_1 links to Rfam database...	0.74	0.71	0.77	10	1022	4	0	3	1	4
RFA_00706	Hammerhead_1 links to Rfam database...	0.31	0.29	0.36	4	1024	7	0	7	0	10
RFA_00707	Hammerhead_1 links to Rfam database...	0.31	0.29	0.36	4	1024	7	0	7	0	10
RFA_00708	Hammerhead_1 links to Rfam database...	0.59	0.50	0.70	7	1025	4	0	3	1	7
RFA_00709	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	982	9	0	8	1	14
RFA_00710	Hammerhead_1 links to Rfam database...	0.38	0.36	0.42	5	978	8	0	7	1	9
RFA_00711	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	1026	9	0	9	0	14
RFA_00715	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	933	13	0	13	0	14
RFA_00716	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	936	10	0	10	0	14
RFA_00717	Hammerhead_1 links to Rfam database...	0.69	0.64	0.75	9	891	3	0	3	0	5
RFA_00720	-	0.41	0.43	0.40	6	1161	9	2	7	0	8
RFA_00721	-	0.30	0.29	0.33	4	1164	8	3	5	0	10
RFA_00730	s2m links to Rfam database...	0.69	0.67	0.73	8	892	5	1	2	2	4
RFA_00731	s2m links to Rfam database...	0.41	0.42	0.42	5	891	8	3	4	1	7
RFA_00733	s2m links to Rfam database...	0.43	0.42	0.45	5	892	7	1	5	1	7
RFA_00734	s2m links to Rfam database...	0.64	0.42	1.00	5	898	1	0	0	1	7
RFA_00736	s2m links to Rfam database...	0.41	0.42	0.42	5	891	8	3	4	1	7
RFA_00737	s2m links to Rfam database...	0.39	0.42	0.38	5	890	9	2	6	1	7
RFA_00745	s2m links to Rfam database...	0.43	0.42	0.45	5	935	7	1	5	1	7
RFA_00749	s2m links to Rfam database...	0.41	0.42	0.42	5	891	8	3	4	1	7
RFA_00758	s2m links to Rfam database...	0.57	0.33	1.00	4	899	1	0	0	1	8
RFA_00762	s2m links to Rfam database...	0.64	0.67	0.62	8	890	6	1	4	1	4
RFA_00763	s2m links to Rfam database...	0.43	0.42	0.45	5	892	7	1	5	1	7
RFA_00764	s2m links to Rfam database...	0.43	0.42	0.45	5	892	7	1	5	1	7
RFA_00765	s2m links to Rfam database...	0.81	0.67	1.00	8	895	2	0	0	2	4
RFA_00767	Corona_pk3 links to Rfam database...	0.54	0.50	0.60	9	1876	6	2	4	0	9
RFA_00768	Corona_pk3 links to Rfam database...	0.50	0.44	0.57	8	1877	9	0	6	3	10
RFA_00769	Corona_pk3 links to Rfam database...	0.38	0.39	0.39	7	1935	11	2	9	0	11
RFA_00770	Corona_pk3 links to Rfam database...	0.45	0.39	0.54	7	2003	9	0	6	3	11
RFA_00773	Corona_pk3 links to Rfam database...	0.45	0.39	0.54	7	1940	9	0	6	3	11
RFA_00779	Corona_pk3 links to Rfam database...	0.63	0.56	0.71	10	1939	4	3	1	0	8
RFA_00808	RydC links to Rfam database...	-0.01	0.00	0.00	0	1999	19	3	14	2	16
RFA_00809	RydC links to Rfam database...	0.38	0.38	0.40	6	2130	11	0	9	2	10
SPR_00007	tRNA links to Rfam database...	0.49	0.52	0.46	11	2826	13	2	11	0	10
SPR_00009	tRNA links to Rfam database...	0.26	0.30	0.23	6	2824	20	3	17	0	14
SPR_00010	tRNA links to Rfam database...	0.29	0.33	0.27	7	2824	19	3	16	0	14
SPR_00012	tRNA links to Rfam database...	0.23	0.25	0.23	5	2828	17	3	14	0	15
SPR_00013	tRNA links to Rfam database...	0.45	0.50	0.42	10	2826	15	6	8	1	10
SPR_00016	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00017	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00020	tRNA links to Rfam database...	0.79	0.75	0.83	15	2683	6	0	3	3	5
SPR_00022	tRNA links to Rfam database...	0.32	0.33	0.32	7	2904	15	5	10	0	14
SPR_00023	tRNA links to Rfam database...	0.47	0.52	0.42	11	2824	15	5	10	0	10
SPR_00025	tRNA links to Rfam database...	0.33	0.35	0.32	7	2904	16	1	14	1	13
SPR_00026	tRNA links to Rfam database...	0.32	0.33	0.32	7	2904	15	1	14	0	14
SPR_00027	tRNA links to Rfam database...	0.61	0.57	0.67	12	2908	8	0	6	2	9
SPR_00029	tRNA links to Rfam database...	0.31	0.35	0.29	7	2604	17	7	10	0	13
SPR_00030	-	0.58	0.57	0.60	12	2465	9	2	6	1	9
SPR_00032	tRNA links to Rfam database...	1.00	1.00	1.00	21	2535	2	0	0	2	0
SPR_00033	tRNA links to Rfam database...	1.00	1.00	1.00	21	2607	0	0	0	0	0
SPR_00034	-	1.00	1.00	1.00	21	2464	2	0	0	2	0
SPR_00036	tRNA links to Rfam database...	0.79	0.75	0.83	15	2757	4	2	1	1	5
SPR_00044	tRNA links to Rfam database...	0.32	0.35	0.30	7	2827	16	4	12	0	13
SPR_00045	tRNA links to Rfam database...	1.00	1.00	1.00	22	2828	0	0	0	0	0
SPR_00060	tRNA links to Rfam database...	0.48	0.52	0.44	11	2750	14	0	14	0	10
SPR_00064	tRNA links to Rfam database...	0.54	0.57	0.52	12	2827	11	2	9	0	9
SPR_00065	tRNA links to Rfam database...	0.49	0.52	0.46	11	2826	13	4	9	0	10
SPR_00066	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00068	tRNA links to Rfam database...	0.73	0.76	0.70	16	2827	8	2	5	1	5
SPR_00070	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00074	tRNA links to Rfam database...	0.55	0.35	0.88	7	2842	2	0	1	1	13
SPR_00078	-	0.62	0.67	0.59	10	1874	9	5	2	2	5
SPR_00079	tRNA links to Rfam database...	1.00	1.00	1.00	19	2466	1	0	0	1	0
SPR_00080	tRNA links to Rfam database...	0.61	0.63	0.60	12	2395	8	1	7	0	7
SPR_00086	tRNA links to Rfam database...	0.30	0.33	0.28	7	2825	18	4	14	0	14
SPR_00087	tRNA links to Rfam database...	0.41	0.40	0.42	8	2831	11	4	7	0	12
SPR_00088	tRNA links to Rfam database...	0.41	0.40	0.42	8	2831	11	4	7	0	12
SPR_00089	tRNA links to Rfam database...	0.41	0.40	0.42	8	2831	11	4	7	0	12
SPR_00090	tRNA links to Rfam database...	0.18	0.20	0.18	4	2828	18	4	14	0	16
SPR_00091	tRNA links to Rfam database...	0.41	0.40	0.42	8	2831	11	4	7	0	12
SPR_00095	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00111	tRNA links to Rfam database...	0.54	0.57	0.52	12	2678	11	1	10	0	9
SPR_00112	tRNA links to Rfam database...	0.81	0.81	0.81	17	2680	6	0	4	2	4
SPR_00113	tRNA links to Rfam database...	0.77	0.75	0.79	15	2756	7	0	4	3	5
SPR_00114	tRNA links to Rfam database...	1.00	1.00	1.00	21	2680	1	0	0	1	0
SPR_00115	tRNA links to Rfam database...	0.83	0.81	0.85	17	2681	3	1	2	0	4
SPR_00116	tRNA links to Rfam database...	1.00	1.00	1.00	21	2680	2	0	0	2	0
SPR_00117	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	2	0	0	2	0
SPR_00121	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	3	0	0	3	0
SPR_00124	tRNA links to Rfam database...	0.68	0.68	0.68	15	2534	7	3	4	0	7
SPR_00126	-	0.56	0.55	0.58	11	2061	10	0	8	2	9
SPR_00127	-	0.24	0.28	0.22	5	2392	20	1	17	2	13
SPR_00137	tRNA links to Rfam database...	0.84	0.86	0.82	18	2904	10	0	4	6	3
SPR_00138	tRNA links to Rfam database...	0.79	0.85	0.74	17	2903	7	0	6	1	3
SPR_00139	tRNA links to Rfam database...	0.53	0.52	0.55	11	2906	10	0	9	1	10
SPR_00141	tRNA links to Rfam database...	0.95	0.95	0.95	19	2755	2	0	1	1	1
SPR_00142	-	0.50	0.53	0.48	10	2607	13	3	8	2	9
SPR_00153	tRNA links to Rfam database...	0.32	0.33	0.32	7	2904	15	3	12	0	14
SPR_00155	tRNA links to Rfam database...	0.51	0.57	0.46	12	2900	14	3	11	0	9
SPR_00156	tRNA links to Rfam database...	0.51	0.57	0.46	12	2900	14	5	9	0	9
SPR_00163	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	2	0	0	2	0
SPR_00164	tRNA links to Rfam database...	0.50	0.52	0.48	11	2903	13	4	8	1	10
SPR_00166	-	0.37	0.37	0.39	7	2538	11	3	8	0	12
SPR_00167	tRNA links to Rfam database...	0.85	0.85	0.85	17	2536	5	2	1	2	3
SPR_00176	tRNA links to Rfam database...	0.70	0.75	0.65	15	2827	8	4	4	0	5
SPR_00177	tRNA links to Rfam database...	0.50	0.52	0.48	11	2827	12	1	11	0	10
SPR_00178	tRNA links to Rfam database...	0.73	0.76	0.70	16	2827	7	3	4	0	5
SPR_00183	-	0.56	0.55	0.58	11	2831	8	3	5	0	9
SPR_00191	tRNA links to Rfam database...	0.58	0.57	0.60	12	2830	9	0	8	1	9
SPR_00200	tRNA links to Rfam database...	0.74	0.76	0.73	16	2828	6	3	3	0	5
SPR_00209	tRNA links to Rfam database...	0.57	0.63	0.52	12	3547	13	5	6	2	7
SPR_00213	tRNA links to Rfam database...	0.45	0.52	0.39	11	3800	17	6	11	0	10
SPR_00215	tRNA links to Rfam database...	0.53	0.55	0.52	11	3549	14	2	8	4	9
SPR_00218	tRNA links to Rfam database...	0.56	0.60	0.52	12	3718	18	6	5	7	8
SPR_00219	tRNA links to Rfam database...	0.77	0.85	0.71	17	3717	11	2	5	4	3
SPR_00220	tRNA links to Rfam database...	0.23	0.25	0.23	5	3719	21	3	14	4	15
SPR_00221	tRNA links to Rfam database...	0.29	0.33	0.26	7	3714	24	5	15	4	14
SPR_00223	tRNA links to Rfam database...	0.36	0.35	0.37	7	3551	12	6	6	0	13
SPR_00224	tRNA links to Rfam database...	0.73	0.85	0.63	17	3714	10	7	3	0	3
SPR_00225	tRNA links to Rfam database...	0.45	0.52	0.39	11	3713	17	8	9	0	10
SPR_00226	tRNA links to Rfam database...	0.51	0.57	0.46	12	3629	17	5	9	3	9
SPR_00227	tRNA links to Rfam database...	0.29	0.33	0.27	7	3460	22	5	14	3	14
SPR_00228	tRNA links to Rfam database...	0.61	0.60	0.63	12	3809	9	1	6	2	8
SPR_00229	tRNA links to Rfam database...	0.71	0.81	0.63	17	3376	10	5	5	0	4
SPR_00230	tRNA links to Rfam database...	-0.01	0.00	0.00	0	3545	28	7	18	3	21
SPR_00235	tRNA links to Rfam database...	0.27	0.33	0.23	7	3710	24	12	12	0	14
SPR_00236	tRNA links to Rfam database...	0.30	0.35	0.27	7	3544	19	8	11	0	13
SPR_00246	tRNA links to Rfam database...	0.53	0.55	0.52	11	2680	12	1	9	2	9
SPR_00263	tRNA links to Rfam database...	0.75	0.86	0.67	18	3543	9	4	5	0	3
SPR_00271	tRNA links to Rfam database...	0.74	0.76	0.73	16	2828	7	0	6	1	5
SPR_00273	tRNA links to Rfam database...	0.23	0.24	0.24	5	2829	17	0	16	1	16
SPR_00276	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00277	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00279	tRNA links to Rfam database...	0.36	0.33	0.39	7	2908	11	6	5	0	14
SPR_00281	-	0.35	0.41	0.30	7	1993	16	8	8	0	10
SPR_00289	tRNA links to Rfam database...	0.73	0.75	0.71	15	2905	9	2	4	3	5
SPR_00294	tRNA links to Rfam database...	0.53	0.57	0.50	12	2826	12	1	11	0	9
SPR_00295	tRNA links to Rfam database...	0.52	0.52	0.52	11	2754	10	4	6	0	10
SPR_00297	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	0	0	0	0	0
SPR_00298	tRNA links to Rfam database...	0.45	0.45	0.45	9	2755	11	0	11	0	11
SPR_00309	tRNA links to Rfam database...	0.79	0.81	0.77	17	2904	7	2	3	2	4
SPR_00314	tRNA links to Rfam database...	0.74	0.81	0.68	17	2901	11	0	8	3	4
SPR_00315	tRNA links to Rfam database...	0.74	0.81	0.68	17	2901	10	0	8	2	4
SPR_00316	tRNA links to Rfam database...	0.67	0.71	0.63	15	2902	13	3	6	4	6
SPR_00317	tRNA links to Rfam database...	0.56	0.60	0.52	12	2903	11	6	5	0	8
SPR_00318	tRNA links to Rfam database...	0.73	0.76	0.70	16	2903	11	3	4	4	5
SPR_00320	tRNA links to Rfam database...	0.55	0.58	0.52	11	2754	12	6	4	2	8
SPR_00321	tRNA links to Rfam database...	0.53	0.57	0.50	12	2979	12	6	6	0	9
SPR_00327	tRNA links to Rfam database...	0.51	0.52	0.50	11	2981	11	3	8	0	10
SPR_00329	tRNA links to Rfam database...	0.79	0.81	0.77	17	2828	7	0	5	2	4
SPR_00331	tRNA links to Rfam database...	0.71	0.75	0.68	15	2753	7	2	5	0	5
SPR_00333	tRNA links to Rfam database...	0.55	0.62	0.50	13	2749	13	4	9	0	8
SPR_00339	tRNA links to Rfam database...	0.48	0.52	0.44	11	2750	15	5	9	1	10
SPR_00352	tRNA links to Rfam database...	0.73	0.76	0.70	16	2903	9	3	4	2	5
SPR_00353	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00356	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	0	0	0	0	0
SPR_00357	tRNA links to Rfam database...	0.71	0.76	0.67	16	2902	8	0	8	0	5
SPR_00358	tRNA links to Rfam database...	0.73	0.80	0.67	16	2902	8	3	5	0	4
SPR_00359	tRNA links to Rfam database...	0.50	0.50	0.50	11	2904	12	0	11	1	11
SPR_00360	tRNA links to Rfam database...	0.31	0.32	0.30	7	2678	16	5	11	0	15
SPR_00362	-	1.00	1.00	1.00	13	1418	5	0	0	5	0
SPR_00363	-	0.69	0.67	0.71	10	1582	6	1	3	2	5
SPR_00364	-	0.52	0.55	0.50	11	2189	11	3	8	0	9
SPR_00365	-	0.22	0.23	0.22	5	2533	19	3	15	1	17
SPR_00366	-	0.81	0.75	0.88	15	2539	2	1	1	0	5
SPR_00367	-	0.69	0.73	0.67	16	2461	8	2	6	0	6
SPR_00369	tRNA links to Rfam database...	0.52	0.57	0.48	12	2750	14	3	10	1	9
SPR_00370	tRNA links to Rfam database...	0.52	0.57	0.48	12	2750	14	3	10	1	9
SPR_00373	tRNA links to Rfam database...	0.31	0.33	0.29	7	2826	17	7	10	0	14
SPR_00374	tRNA links to Rfam database...	0.30	0.33	0.28	7	2825	18	7	11	0	14
SPR_00385	tRNA links to Rfam database...	0.73	0.75	0.71	15	4257	15	0	6	9	5
SPR_00386	tRNA links to Rfam database...	0.31	0.35	0.28	7	4161	23	8	10	5	13
SPR_00388	tRNA links to Rfam database...	0.52	0.57	0.48	12	4161	19	6	7	6	9
SPR_00389	tRNA links to Rfam database...	0.79	0.85	0.74	17	3982	11	1	5	5	3
SPR_00390	tRNA links to Rfam database...	0.22	0.24	0.21	5	4254	27	0	19	8	16
SPR_00391	tRNA links to Rfam database...	0.25	0.29	0.23	6	3802	20	8	12	0	15
SPR_00393	tRNA links to Rfam database...	0.55	0.55	0.55	11	3808	14	1	8	5	9
SPR_00394	tRNA links to Rfam database...	0.57	0.57	0.57	12	3634	14	5	4	5	9
SPR_00395	tRNA links to Rfam database...	0.50	0.57	0.44	12	3978	16	7	8	1	9
SPR_00398	-	-0.01	0.00	0.00	0	2192	21	3	16	2	13
SPR_00399	-	0.61	0.75	0.50	12	2461	12	8	4	0	4
SPR_00402	tRNA links to Rfam database...	0.62	0.62	0.62	13	2535	8	1	7	0	8
SPR_00412	tRNA links to Rfam database...	-0.01	0.00	0.00	0	3632	27	3	20	4	21
SPR_00414	tRNA links to Rfam database...	0.90	0.86	0.95	18	3551	6	0	1	5	3
SPR_00415	tRNA links to Rfam database...	0.31	0.33	0.30	7	3547	20	5	11	4	14
SPR_00416	tRNA links to Rfam database...	0.18	0.19	0.18	4	3548	22	2	16	4	17
SPR_00417	tRNA links to Rfam database...	0.95	0.95	0.95	21	3548	6	0	1	5	1
SPR_00418	tRNA links to Rfam database...	0.95	0.95	0.95	21	3548	6	0	1	5	1
SPR_00426	tRNA links to Rfam database...	1.00	1.00	1.00	21	2982	4	0	0	4	0
SPR_00434	tRNA links to Rfam database...	0.32	0.33	0.32	7	2828	15	3	12	0	14
SPR_00435	tRNA links to Rfam database...	0.65	0.67	0.64	14	2828	8	0	8	0	7
SPR_00436	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	2	0	0	2	0
SPR_00437	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	2	0	0	2	0
SPR_00438	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	0	0	0	0	0
SPR_00439	tRNA links to Rfam database...	0.31	0.35	0.28	7	2676	18	6	12	0	13
SPR_00445	tRNA links to Rfam database...	0.77	0.85	0.71	17	2979	8	1	6	1	3
SPR_00452	tRNA links to Rfam database...	0.73	0.76	0.70	16	2827	7	3	4	0	5
SPR_00455	tRNA links to Rfam database...	0.29	0.33	0.27	7	2824	19	3	16	0	14
SPR_00456	tRNA links to Rfam database...	0.55	0.57	0.55	12	2828	13	1	9	3	9
SPR_00458	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	0	0	0	0	0
SPR_00459	tRNA links to Rfam database...	0.55	0.55	0.55	11	2755	9	2	7	0	9
SPR_00461	tRNA links to Rfam database...	0.95	0.95	0.95	18	2537	2	0	1	1	1
SPR_00462	tRNA links to Rfam database...	0.72	0.74	0.70	14	2395	7	3	3	1	5
SPR_00467	tRNA links to Rfam database...	0.55	0.55	0.55	11	2830	10	1	8	1	9
SPR_00476	tRNA links to Rfam database...	0.50	0.52	0.48	11	2752	12	3	9	0	10
SPR_00478	tRNA links to Rfam database...	0.53	0.52	0.55	11	2755	10	0	9	1	10
SPR_00479	tRNA links to Rfam database...	0.51	0.52	0.50	11	2828	12	1	10	1	10
SPR_00481	tRNA links to Rfam database...	0.38	0.33	0.44	7	2759	10	0	9	1	14
SPR_00482	tRNA links to Rfam database...	0.80	0.76	0.84	16	2682	3	2	1	0	5
SPR_00483	tRNA links to Rfam database...	0.73	0.71	0.75	15	2830	6	0	5	1	6
SPR_00487	tRNA links to Rfam database...	1.00	1.00	1.00	22	2679	0	0	0	0	0
SPR_00489	tRNA links to Rfam database...	0.48	0.48	0.50	10	2681	12	4	6	2	11
SPR_00493	tRNA links to Rfam database...	0.95	0.95	0.95	21	2753	1	0	1	0	1
SPR_00496	tRNA links to Rfam database...	0.48	0.52	0.44	11	2750	14	3	11	0	10
SPR_00497	tRNA links to Rfam database...	0.50	0.52	0.48	11	2752	12	3	9	0	10
SPR_00498	tRNA links to Rfam database...	0.53	0.60	0.48	12	2978	13	3	10	0	8
SPR_00502	tRNA links to Rfam database...	0.56	0.57	0.55	12	2904	10	2	8	0	9
SPR_00504	tRNA links to Rfam database...	0.50	0.55	0.46	11	2826	13	3	10	0	9
SPR_00505	tRNA links to Rfam database...	0.52	0.55	0.50	11	2904	11	3	8	0	9
SPR_00506	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	2	0	0	2	0
SPR_00509	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	2	0	0	2	0
SPR_00512	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	2	0	0	2	0
SPR_00513	tRNA links to Rfam database...	0.51	0.50	0.53	10	2907	9	0	9	0	10
SPR_00517	tRNA links to Rfam database...	0.25	0.25	0.26	5	2831	15	2	12	1	15
SPR_00518	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00519	tRNA links to Rfam database...	0.80	0.76	0.84	16	2537	4	0	3	1	5
SPR_00520	tRNA links to Rfam database...	0.48	0.50	0.47	9	2537	10	4	6	0	9
SPR_00533	tRNA links to Rfam database...	0.60	0.62	0.59	13	2753	9	3	6	0	8
SPR_00541	tRNA links to Rfam database...	0.31	0.33	0.29	7	3462	20	0	17	3	14
SPR_00542	tRNA links to Rfam database...	0.30	0.33	0.28	7	3545	21	2	16	3	14
SPR_00544	tRNA links to Rfam database...	0.71	0.80	0.64	16	3545	9	5	4	0	4
SPR_00548	tRNA links to Rfam database...	0.54	0.62	0.48	13	3376	14	6	8	0	8
SPR_00550	tRNA links to Rfam database...	0.31	0.32	0.30	7	3805	18	0	16	2	15
SPR_00552	tRNA links to Rfam database...	0.21	0.21	0.22	4	2683	14	2	12	0	15
SPR_00557	tRNA links to Rfam database...	0.50	0.52	0.48	11	2827	12	2	10	0	10
SPR_00561	tRNA links to Rfam database...	0.52	0.52	0.52	11	2829	11	0	10	1	10
SPR_00590	tRNA links to Rfam database...	0.31	0.35	0.28	7	2978	18	7	11	0	13
SPR_00593	tRNA links to Rfam database...	0.35	0.37	0.33	7	2754	14	3	11	0	12
SPR_00595	tRNA links to Rfam database...	0.78	0.76	0.80	16	2755	4	2	2	0	5
SPR_00598	tRNA links to Rfam database...	0.82	0.76	0.89	16	2985	3	0	2	1	5
SPR_00610	tRNA links to Rfam database...	0.76	0.76	0.76	16	2535	6	3	2	1	5
SPR_00620	tRNA links to Rfam database...	0.52	0.57	0.48	12	2978	14	5	8	1	9
SPR_00629	-	0.93	0.93	0.93	14	1876	8	0	1	7	1
SPR_00632	tRNA links to Rfam database...	0.60	0.60	0.60	12	2536	8	1	7	0	8
SPR_00633	tRNA links to Rfam database...	0.50	0.55	0.46	11	2532	13	2	11	0	9
SPR_00721	tRNA links to Rfam database...	0.52	0.57	0.48	12	2901	15	1	12	2	9
SPR_00722	tRNA links to Rfam database...	0.76	0.80	0.73	16	2904	6	4	2	0	4
SPR_00750	tRNA links to Rfam database...	0.65	0.58	0.73	11	2541	6	1	3	2	8
SPR_00758	tRNA links to Rfam database...	0.29	0.33	0.27	7	2977	20	7	12	1	14
SPR_00760	tRNA links to Rfam database...	0.48	0.52	0.44	11	3545	18	4	10	4	10
SPR_00768	-	0.65	0.67	0.63	12	2061	9	3	4	2	6
SPR_00777	tRNA links to Rfam database...	0.51	0.55	0.48	11	2605	12	5	7	0	9
SPR_00810	tRNA links to Rfam database...	0.58	0.63	0.55	12	3548	16	3	7	6	7
SPR_00816	tRNA links to Rfam database...	0.32	0.35	0.29	7	3462	20	5	12	3	13
SPR_00832	-	0.64	0.67	0.63	10	1637	8	2	4	2	5
SPR_00867	tRNA links to Rfam database...	0.48	0.52	0.44	11	2901	16	4	10	2	10
SPR_00868	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	3	0	0	3	0
SPR_00882	tRNA links to Rfam database...	0.45	0.50	0.42	10	2604	14	5	9	0	10
SPR_00912	tRNA links to Rfam database...	0.49	0.52	0.46	11	2979	16	3	10	3	10
SPR_00913	tRNA links to Rfam database...	0.49	0.52	0.46	11	2979	14	2	11	1	10
SPR_00932	tRNA links to Rfam database...	0.34	0.38	0.32	8	2825	18	4	13	1	13
SPR_00938	-	-0.01	0.00	0.00	0	1635	18	5	13	0	15
SPR_00943	tRNA links to Rfam database...	0.78	0.80	0.76	16	2535	6	3	2	1	4
SPR_00957	tRNA links to Rfam database...	0.83	0.81	0.85	17	2983	4	0	3	1	4
SPR_01040	tRNA links to Rfam database...	0.60	0.57	0.63	12	2756	8	0	7	1	9
SPR_01051	tRNA links to Rfam database...	0.31	0.33	0.29	7	2532	17	4	13	0	14
SPR_01088	tRNA links to Rfam database...	0.51	0.52	0.50	11	2904	13	2	9	2	10
SPR_01095	tRNA links to Rfam database...	0.76	0.76	0.76	16	2829	6	0	5	1	5
SPR_01103	-	0.60	0.67	0.56	10	1752	10	6	2	2	5
SPR_01106	tRNA links to Rfam database...	1.00	1.00	1.00	21	2535	2	0	0	2	0
SPR_01117	tRNA links to Rfam database...	0.31	0.33	0.30	7	2980	16	2	14	0	14
SPR_01143	tRNA links to Rfam database...	0.48	0.33	0.70	7	2546	3	0	3	0	14
SPR_01157	tRNA links to Rfam database...	0.73	0.76	0.70	16	2752	8	0	7	1	5
SRP_00005	-	0.15	0.17	0.15	4	3978	24	6	17	1	20
SRP_00008	Bacteria_small_SRP links to Rfam database...	0.66	0.68	0.65	17	2900	11	0	9	2	8
SRP_00042	Bacteria_small_SRP links to Rfam database...	0.50	0.48	0.52	12	3982	12	2	9	1	13
SRP_00046	Bacteria_small_SRP links to Rfam database...	0.56	0.56	0.56	18	4721	15	1	13	1	14
SRP_00083	-	0.82	0.73	0.92	22	4827	3	0	2	1	8
SRP_00094	Bacteria_small_SRP links to Rfam database...	0.68	0.71	0.65	17	4069	10	1	8	1	7
SRP_00095	Bacteria_small_SRP links to Rfam database...	0.25	0.28	0.24	7	3976	22	2	20	0	18
SRP_00101	-	0.81	0.84	0.78	21	3543	8	0	6	2	4
SRP_00107	Bacteria_small_SRP links to Rfam database...	0.12	0.16	0.10	3	3625	29	6	21	2	16
SRP_00121	Bacteria_small_SRP links to Rfam database...	0.45	0.48	0.43	12	4250	16	4	12	0	13
SRP_00132	Bacteria_small_SRP links to Rfam database...	0.66	0.69	0.65	20	4820	14	0	11	3	9
SRP_00137	Bacteria_small_SRP links to Rfam database...	0.36	0.40	0.33	10	4156	22	3	17	2	15
SRP_00138	-	0.51	0.48	0.54	13	3981	13	2	9	2	14
SRP_00139	-	-0.01	0.00	0.00	0	2132	13	4	9	0	12
SRP_00161	Bacteria_small_SRP links to Rfam database...	0.44	0.45	0.43	10	2827	13	3	10	0	12
SRP_00162	Bacteria_small_SRP links to Rfam database...	0.58	0.61	0.56	14	2901	13	2	9	2	9
SRP_00163	Bacteria_small_SRP links to Rfam database...	0.45	0.46	0.44	12	3459	16	4	11	1	14
SRP_00170	Bacteria_small_SRP links to Rfam database...	0.34	0.36	0.33	9	4068	19	0	18	1	16
SRP_00194	Bacteria_small_SRP links to Rfam database...	0.73	0.76	0.70	16	3217	10	0	7	3	5
SRP_00196	-	0.45	0.46	0.43	13	4626	21	1	16	4	15
SRP_00209	Bacteria_small_SRP links to Rfam database...	0.35	0.37	0.33	10	4626	20	3	17	0	17
SRP_00213	Bacteria_small_SRP links to Rfam database...	0.37	0.40	0.36	10	4158	18	1	17	0	15
SRP_00214	-	0.73	0.75	0.72	18	3056	10	0	7	3	6
SRP_00215	Bacteria_small_SRP links to Rfam database...	0.41	0.40	0.43	10	3217	14	1	12	1	15
SRP_00216	Bacteria_small_SRP links to Rfam database...	0.85	0.85	0.85	23	3376	5	1	3	1	4
SRP_00217	Bacteria_small_SRP links to Rfam database...	0.87	0.83	0.91	20	3299	3	0	2	1	4
SRP_00219	Bacteria_small_SRP links to Rfam database...	0.89	0.87	0.91	20	3299	3	0	2	1	3
SRP_00221	-	0.38	0.38	0.38	8	3382	14	2	11	1	13
SRP_00222	Bacteria_small_SRP links to Rfam database...	0.84	0.84	0.84	21	3056	5	1	3	1	4
SRP_00223	-	0.70	0.70	0.70	14	3383	8	0	6	2	6
SRP_00256	-	0.16	0.18	0.14	4	4250	24	6	18	0	18
SRP_00266	Bacteria_small_SRP links to Rfam database...	0.32	0.34	0.30	10	4623	23	4	19	0	19
SRP_00268	Bacteria_small_SRP links to Rfam database...	0.48	0.48	0.48	13	4159	15	1	13	1	14
SRP_00270	Bacteria_small_SRP links to Rfam database...	0.43	0.45	0.41	14	4622	20	2	18	0	17
SRP_00271	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	3215	25	3	22	0	24
SRP_00284	-	0.89	0.86	0.93	25	3714	3	0	2	1	4
SRP_00285	Bacteria_small_SRP links to Rfam database...	0.77	0.73	0.81	22	3714	6	0	5	1	8
SRP_00310	Bacteria_small_SRP links to Rfam database...	0.40	0.43	0.38	10	2900	16	1	15	0	13
SRP_00312	Bacteria_small_SRP links to Rfam database...	0.35	0.37	0.34	10	4157	19	0	19	0	17
SRP_00315	Bacteria_small_SRP links to Rfam database...	0.82	0.83	0.83	19	2903	5	0	4	1	4
SRP_00318	Bacteria_small_SRP links to Rfam database...	0.82	0.83	0.83	19	2980	5	0	4	1	4
SRP_00325	Bacteria_small_SRP links to Rfam database...	0.73	0.73	0.73	24	4338	9	1	8	0	9
SRP_00341	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	4726	27	5	22	0	31
SRP_00342	Bacteria_small_SRP links to Rfam database...	0.57	0.60	0.56	15	3978	17	1	11	5	10
SRP_00350	Bacteria_small_SRP links to Rfam database...	0.36	0.33	0.39	9	3893	14	2	12	0	18
SRP_00363	Bacteria_small_SRP links to Rfam database...	0.92	0.93	0.90	28	4722	6	0	3	3	2
SRP_00365	Bacteria_small_SRP links to Rfam database...	0.39	0.37	0.42	10	3379	15	2	12	1	17
SRP_00383	Bacteria_small_SRP links to Rfam database...	0.12	0.13	0.13	3	3216	21	4	17	0	21

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Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.

Table of contents:

Overview

Performance plots

Performance of Pknots - scored higher in this pairwise comparison

1. Total counts & total scores for Pknots

2. Individual counts for Pknots [ download as .csv ]

Performance of Alterna - scored lower in this pairwise comparison

1. Total counts & total scores for Alterna

2. Individual counts for Alterna [ download as .csv ]