CompaRNA - on-line benchmarks of RNA structure prediction methods

Laboratory of Structural Bioinformatics @ Adam Mickiewicz University in Poznan

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Overview

Metric	ProbKnot		CMfinder(20)
MCC	0.619	>	0.549
Average MCC ± 95% Confidence Intervals	0.658 ± 0.020	>	0.621 ± 0.019
Sensitivity	0.603	>	0.380
Positive Predictive Value	0.637	<	0.794
Total TP	19991	>	12594
Total TN	15416380	<	15431933
Total FP	13519	>	3841
Total FP CONTRA	1804	>	280
Total FP INCONS	9610	>	2978
Total FP COMP	2105	>	583
Total FN	13144	<	20541
P-value	3.56938820447e-08

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Performance plots

Comparison of performance of ProbKnot and CMfinder(20). Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data (individual counts for ProbKnot and CMfinder(20)).
Average Matthews Correlation Coefficients (MCC) with 95% confidence intervals (CIs) were plotted for different RNA families, for which at least 3 members were present in the benchmarking dataset. 'n' denotes the number of MCCs used to calculate the average and CI. See tables below for raw data (individual counts for ProbKnot and CMfinder(20)).
Comparison of average Matthews Correlation Coefficients (MCCs) for ProbKnot and CMfinder(20). The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data (individual counts for ProbKnot and CMfinder(20)).

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Performance of ProbKnot - scored higher in this pairwise comparison

1. Total counts & total scores for ProbKnot

Total Base Pair Counts
Total TP	19991
Total TN	15416380
Total FP	13519
Total FP CONTRA	1804
Total FP INCONS	9610
Total FP COMP	2105
Total FN	13144

Total Scores
MCC	0.619
Average MCC ± 95% Confidence Intervals	0.658 ± 0.020
Sensitivity	0.603
Positive Predictive Value	0.637
Nr of predictions	561

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2. Individual counts for ProbKnot [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00004	RNaseP_bact_a links to Rfam database...	0.70	0.69	0.72	67	47802	28	9	17	2	30
ASE_00005	RNaseP_bact_a links to Rfam database...	0.62	0.56	0.69	65	57876	33	4	25	4	52
ASE_00006	RNaseP_bact_a links to Rfam database...	0.54	0.53	0.55	49	47497	45	10	30	5	44
ASE_00007	RNaseP_bact_a links to Rfam database...	0.72	0.64	0.80	70	59598	25	0	17	8	40
ASE_00012	RNaseP_bact_a links to Rfam database...	0.50	0.46	0.56	56	73820	50	3	41	6	67
ASE_00018	RNaseP_bact_a links to Rfam database...	0.55	0.52	0.59	70	80482	51	1	48	2	64
ASE_00020	RNaseP_bact_a links to Rfam database...	0.59	0.57	0.62	72	73803	51	6	39	6	54
ASE_00021	RNaseP_bact_a links to Rfam database...	0.62	0.56	0.69	90	104066	49	4	36	9	70
ASE_00022	RNaseP_bact_b links to Rfam database...	0.51	0.46	0.56	57	82927	51	5	39	7	67
ASE_00028	RNaseP_bact_b links to Rfam database...	0.73	0.70	0.76	88	84550	36	6	22	8	38
ASE_00035	RNaseP_bact_a links to Rfam database...	0.39	0.37	0.40	44	70391	70	9	56	5	74
ASE_00037	RNaseP_bact_a links to Rfam database...	0.41	0.36	0.47	40	59254	50	1	45	4	70
ASE_00038	RNaseP_bact_a links to Rfam database...	0.79	0.75	0.83	76	53536	22	1	15	6	25
ASE_00040	RNaseP_bact_a links to Rfam database...	0.46	0.40	0.53	53	78903	52	4	43	5	80
ASE_00041	RNaseP_bact_a links to Rfam database...	0.44	0.41	0.48	44	57538	53	5	43	5	64
ASE_00042	RNaseP_bact_a links to Rfam database...	0.50	0.46	0.54	66	89978	62	2	54	6	79
ASE_00044	RNaseP_bact_a links to Rfam database...	0.74	0.74	0.74	78	54509	34	6	22	6	27
ASE_00045	RNaseP_bact_b links to Rfam database...	0.67	0.68	0.68	54	47198	34	7	19	8	26
ASE_00064	RNaseP_bact_a links to Rfam database...	0.38	0.39	0.38	35	45358	67	6	52	9	54
ASE_00068	RNaseP_bact_a links to Rfam database...	0.57	0.52	0.64	44	37606	30	2	23	5	41
ASE_00074	RNaseP_bact_a links to Rfam database...	0.53	0.51	0.55	61	67785	53	4	46	3	58
ASE_00075	RNaseP_bact_a links to Rfam database...	0.67	0.62	0.72	100	108673	51	3	35	13	62
ASE_00077	RNaseP_bact_a links to Rfam database...	0.55	0.53	0.57	46	45069	41	4	31	6	40
ASE_00078	RNaseP_bact_a links to Rfam database...	0.66	0.61	0.71	51	42999	27	2	19	6	32
ASE_00080	RNaseP_bact_a links to Rfam database...	0.59	0.54	0.63	67	71525	45	6	33	6	56
ASE_00081	RNaseP_bact_a links to Rfam database...	0.76	0.69	0.84	67	49690	15	4	9	2	30
ASE_00082	RNaseP_bact_a links to Rfam database...	0.79	0.70	0.90	81	70410	24	1	8	15	35
ASE_00083	RNaseP_bact_a links to Rfam database...	0.68	0.66	0.70	73	62377	38	8	23	7	37
ASE_00084	RNaseP_bact_a links to Rfam database...	0.79	0.76	0.82	75	53536	19	4	13	2	24
ASE_00087	RNaseP_bact_a links to Rfam database...	0.71	0.64	0.78	92	88292	33	4	22	7	52
ASE_00090	RNaseP_bact_a links to Rfam database...	0.67	0.67	0.66	68	55508	43	4	31	8	33
ASE_00092	RNaseP_bact_a links to Rfam database...	0.79	0.75	0.83	85	63443	26	3	15	8	28
ASE_00099	RNaseP_bact_a links to Rfam database...	0.81	0.72	0.91	86	64525	15	0	9	6	34
ASE_00104	RNaseP_bact_a links to Rfam database...	0.70	0.66	0.76	78	64158	29	2	23	4	41
ASE_00105	RNaseP_bact_a links to Rfam database...	0.44	0.41	0.47	45	64166	59	7	43	9	66
ASE_00107	RNaseP_bact_a links to Rfam database...	0.73	0.71	0.76	90	73035	29	1	27	1	37
ASE_00114	RNaseP_bact_b links to Rfam database...	0.50	0.44	0.57	34	45391	40	0	26	14	43
ASE_00115	RNaseP_bact_a links to Rfam database...	0.67	0.68	0.66	69	54510	47	7	29	11	32
ASE_00118	RNaseP_bact_a links to Rfam database...	0.47	0.47	0.47	48	60624	58	4	50	4	54
ASE_00119	RNaseP_bact_a links to Rfam database...	0.84	0.81	0.87	87	62735	16	2	11	3	21
ASE_00123	RNaseP_bact_a links to Rfam database...	0.53	0.52	0.55	44	38423	42	2	34	6	41
ASE_00125	RNaseP_bact_a links to Rfam database...	0.68	0.64	0.73	56	39263	29	4	17	8	32
ASE_00126	RNaseP_bact_a links to Rfam database...	0.78	0.77	0.80	63	40391	23	1	15	7	19
ASE_00128	RNaseP_bact_a links to Rfam database...	0.73	0.70	0.75	70	53208	31	3	20	8	30
ASE_00129	RNaseP_bact_a links to Rfam database...	0.73	0.70	0.76	78	62733	31	2	22	7	33
ASE_00131	RNaseP_bact_a links to Rfam database...	0.61	0.59	0.63	50	39261	39	1	28	10	35
ASE_00134	RNaseP_bact_a links to Rfam database...	0.42	0.41	0.42	39	50311	58	8	45	5	56
ASE_00135	RNaseP_bact_a links to Rfam database...	0.65	0.64	0.66	70	63084	43	1	35	7	39
ASE_00136	RNaseP_bact_a links to Rfam database...	0.80	0.76	0.84	70	48122	22	0	13	9	22
ASE_00137	RNaseP_bact_a links to Rfam database...	0.69	0.67	0.70	66	48422	33	2	26	5	32
ASE_00138	RNaseP_bact_a links to Rfam database...	0.62	0.60	0.64	49	40393	33	10	18	5	32
ASE_00140	RNaseP_bact_a links to Rfam database...	0.67	0.64	0.71	80	70763	36	4	29	3	45
ASE_00142	RNaseP_bact_a links to Rfam database...	0.71	0.66	0.76	80	67056	31	5	20	6	42
ASE_00146	RNaseP_bact_a links to Rfam database...	0.61	0.56	0.66	69	70772	39	6	29	4	55
ASE_00153	RNaseP_nuc links to Rfam database...	0.62	0.67	0.58	49	57545	73	9	27	37	24
ASE_00161	RNaseP_bact_b links to Rfam database...	0.34	0.34	0.34	30	53540	61	10	48	3	57
ASE_00163	RNaseP_bact_a links to Rfam database...	0.32	0.31	0.33	29	53214	69	5	53	11	64
ASE_00165	RNaseP_bact_a links to Rfam database...	0.46	0.45	0.47	45	52879	53	3	48	2	56
ASE_00170	RNaseP_bact_a links to Rfam database...	0.71	0.69	0.74	64	48741	31	3	20	8	29
ASE_00171	RNaseP_bact_a links to Rfam database...	0.73	0.70	0.77	66	48430	22	6	14	2	28
ASE_00172	RNaseP_bact_a links to Rfam database...	0.78	0.72	0.84	76	58906	20	2	12	6	30
ASE_00174	RNaseP_bact_a links to Rfam database...	0.50	0.50	0.51	54	60970	54	8	43	3	55
ASE_00175	RNaseP_bact_a links to Rfam database...	0.67	0.61	0.73	65	59942	31	2	22	7	42
ASE_00179	RNaseP_bact_a links to Rfam database...	0.57	0.55	0.59	46	44175	33	5	27	1	38
ASE_00180	RNaseP_bact_a links to Rfam database...	0.70	0.66	0.73	66	51270	30	8	16	6	34
ASE_00181	RNaseP_bact_a links to Rfam database...	0.71	0.65	0.78	69	57541	26	4	16	6	37
ASE_00182	RNaseP_bact_a links to Rfam database...	0.59	0.57	0.61	77	84129	53	5	44	4	59
ASE_00183	RNaseP_bact_a links to Rfam database...	0.70	0.68	0.72	77	61318	37	3	27	7	36
ASE_00184	RNaseP_bact_a links to Rfam database...	0.70	0.70	0.70	71	54513	37	5	26	6	31
ASE_00185	RNaseP_bact_a links to Rfam database...	0.76	0.72	0.81	92	73422	29	1	21	7	36
ASE_00186	RNaseP_bact_a links to Rfam database...	0.70	0.68	0.72	90	78878	44	3	32	9	42
ASE_00190	RNaseP_bact_b links to Rfam database...	0.62	0.61	0.63	55	45364	35	4	28	3	35
ASE_00197	RNaseP_bact_a links to Rfam database...	0.59	0.56	0.63	81	89125	55	3	44	8	64
ASE_00198	RNaseP_bact_a links to Rfam database...	0.81	0.75	0.87	77	52561	19	3	9	7	25
ASE_00203	RNaseP_bact_a links to Rfam database...	0.76	0.71	0.82	68	46582	21	4	11	6	28
ASE_00212	RNaseP_bact_a links to Rfam database...	0.64	0.61	0.68	90	93828	49	5	38	6	58
ASE_00214	RNaseP_bact_a links to Rfam database...	0.79	0.79	0.79	81	56178	31	4	17	10	22
ASE_00215	RNaseP_bact_a links to Rfam database...	0.60	0.58	0.63	57	48426	35	5	28	2	42
ASE_00216	RNaseP_bact_a links to Rfam database...	0.48	0.45	0.52	37	39269	35	12	22	1	45
ASE_00217	RNaseP_bact_a links to Rfam database...	0.35	0.32	0.38	29	40394	53	5	42	6	61
ASE_00221	RNaseP_bact_a links to Rfam database...	0.65	0.56	0.75	66	64532	28	0	22	6	51
ASE_00228	RNaseP_bact_a links to Rfam database...	0.57	0.55	0.59	47	46892	33	9	23	1	39
ASE_00229	RNaseP_bact_a links to Rfam database...	0.69	0.66	0.72	57	42407	29	4	18	7	30
ASE_00231	RNaseP_bact_a links to Rfam database...	0.62	0.60	0.63	58	47803	38	6	28	4	38
ASE_00232	RNaseP_bact_a links to Rfam database...	0.66	0.65	0.67	55	38421	31	8	19	4	29
ASE_00234	RNaseP_bact_a links to Rfam database...	0.59	0.55	0.63	71	75354	48	3	38	7	58
ASE_00238	RNaseP_bact_a links to Rfam database...	0.72	0.65	0.80	74	64168	26	2	17	7	40
ASE_00241	RNaseP_bact_a links to Rfam database...	0.63	0.60	0.68	52	43879	32	1	24	7	35
ASE_00242	RNaseP_bact_a links to Rfam database...	0.64	0.60	0.69	67	60978	32	3	27	2	45
ASE_00248	RNaseP_bact_a links to Rfam database...	0.40	0.37	0.44	42	62386	55	4	49	2	72
ASE_00254	RNaseP_bact_a links to Rfam database...	0.37	0.33	0.42	27	36792	44	3	34	7	55
ASE_00255	RNaseP_bact_a links to Rfam database...	0.55	0.54	0.56	70	74565	59	5	51	3	60
ASE_00257	RNaseP_bact_a links to Rfam database...	0.66	0.63	0.70	61	50953	33	1	25	7	36
ASE_00263	RNaseP_bact_a links to Rfam database...	0.70	0.69	0.71	83	70383	40	4	30	6	37
ASE_00267	RNaseP_bact_a links to Rfam database...	0.64	0.59	0.69	52	45075	34	4	19	11	36
ASE_00270	RNaseP_bact_a links to Rfam database...	0.80	0.79	0.82	101	72267	29	1	21	7	27
ASE_00274	RNaseP_bact_a links to Rfam database...	0.64	0.56	0.73	58	55531	25	5	17	3	45
ASE_00277	RNaseP_bact_a links to Rfam database...	0.44	0.44	0.44	40	48114	53	9	42	2	51
ASE_00279	RNaseP_bact_a links to Rfam database...	0.50	0.49	0.52	49	53206	50	6	40	4	52
ASE_00280	RNaseP_bact_a links to Rfam database...	0.50	0.47	0.53	46	51917	45	10	30	5	52
ASE_00281	RNaseP_bact_a links to Rfam database...	0.73	0.67	0.80	59	44477	22	0	15	7	29
ASE_00282	RNaseP_bact_a links to Rfam database...	0.45	0.44	0.47	56	77695	67	5	59	3	71
ASE_00283	RNaseP_bact_a links to Rfam database...	0.76	0.74	0.79	79	61676	28	4	17	7	28
ASE_00284	RNaseP_bact_a links to Rfam database...	0.68	0.67	0.70	72	58208	36	5	26	5	36
ASE_00285	RNaseP_bact_a links to Rfam database...	0.78	0.71	0.85	87	68904	26	4	11	11	35
ASE_00286	RNaseP_bact_a links to Rfam database...	0.40	0.39	0.40	36	46576	62	3	50	9	56
ASE_00287	RNaseP_bact_a links to Rfam database...	0.73	0.70	0.76	72	54851	26	3	20	3	31
ASE_00292	RNaseP_bact_a links to Rfam database...	0.48	0.43	0.54	60	81699	54	2	49	3	78
ASE_00294	RNaseP_bact_a links to Rfam database...	0.75	0.67	0.85	115	114345	27	2	19	6	56
ASE_00296	RNaseP_bact_a links to Rfam database...	0.43	0.39	0.46	57	91683	70	6	60	4	88
ASE_00297	RNaseP_bact_a links to Rfam database...	0.76	0.72	0.79	71	52885	20	3	16	1	27
ASE_00298	RNaseP_bact_a links to Rfam database...	0.50	0.48	0.52	54	67424	55	2	48	5	59
ASE_00305	RNaseP_bact_b links to Rfam database...	0.66	0.65	0.68	55	54534	36	5	21	10	30
ASE_00318	RNaseP_bact_b links to Rfam database...	0.63	0.64	0.63	75	80081	49	15	29	5	43
ASE_00321	RNaseP_bact_b links to Rfam database...	0.72	0.68	0.76	60	54536	24	4	15	5	28
ASE_00328	RNaseP_bact_b links to Rfam database...	0.68	0.66	0.70	74	72665	43	7	25	11	38
ASE_00332	RNaseP_bact_a links to Rfam database...	0.51	0.49	0.53	68	81681	65	6	55	4	70
ASE_00335	RNaseP_bact_b links to Rfam database...	0.60	0.59	0.61	69	75353	49	8	36	5	47
ASE_00340	RNaseP_bact_a links to Rfam database...	0.72	0.72	0.72	61	45971	30	7	17	6	24
ASE_00342	RNaseP_bact_a links to Rfam database...	0.62	0.57	0.68	65	62385	34	2	29	3	50
ASE_00353	RNaseP_bact_a links to Rfam database...	0.60	0.58	0.63	62	57871	41	4	33	4	45
ASE_00361	RNaseP_bact_a links to Rfam database...	0.54	0.54	0.54	69	75338	62	13	46	3	58
ASE_00362	RNaseP_bact_a links to Rfam database...	0.58	0.58	0.58	53	48113	41	2	37	2	38
ASE_00363	RNaseP_bact_a links to Rfam database...	0.57	0.55	0.60	52	51273	44	2	33	9	42
ASE_00364	RNaseP_bact_a links to Rfam database...	0.73	0.70	0.76	74	54188	28	2	21	5	31
ASE_00366	RNaseP_bact_a links to Rfam database...	0.40	0.42	0.39	41	58547	67	11	54	2	57
ASE_00367	RNaseP_bact_a links to Rfam database...	0.57	0.55	0.60	47	42993	40	5	26	9	39
ASE_00369	RNaseP_bact_a links to Rfam database...	0.64	0.59	0.69	63	55854	30	1	27	2	44
ASE_00370	RNaseP_bact_a links to Rfam database...	0.73	0.70	0.77	59	41828	26	1	17	8	25
ASE_00372	RNaseP_bact_a links to Rfam database...	0.67	0.65	0.68	65	51908	37	7	23	7	35
ASE_00374	RNaseP_bact_a links to Rfam database...	0.72	0.72	0.72	63	44762	28	3	22	3	25
ASE_00376	RNaseP_bact_a links to Rfam database...	0.65	0.65	0.65	68	56849	41	5	31	5	37
ASE_00377	RNaseP_bact_a links to Rfam database...	0.75	0.74	0.76	79	57526	35	4	21	10	28
ASE_00379	RNaseP_bact_a links to Rfam database...	0.60	0.57	0.63	51	45975	41	4	26	11	38
ASE_00382	RNaseP_bact_a links to Rfam database...	0.69	0.67	0.71	56	41826	29	6	17	6	28
ASE_00383	RNaseP_bact_a links to Rfam database...	0.51	0.46	0.57	48	54531	43	5	31	7	57
ASE_00384	RNaseP_bact_a links to Rfam database...	0.61	0.59	0.63	54	48430	38	2	30	6	38
ASE_00386	RNaseP_bact_a links to Rfam database...	0.54	0.54	0.54	52	50307	48	7	37	4	44
ASE_00387	RNaseP_bact_a links to Rfam database...	0.68	0.65	0.72	68	55850	33	1	26	6	36
ASE_00388	RNaseP_bact_a links to Rfam database...	0.63	0.58	0.68	52	45676	37	1	24	12	37
ASE_00390	RNaseP_bact_a links to Rfam database...	0.61	0.60	0.63	51	42114	41	0	30	11	34
ASE_00393	RNaseP_bact_a links to Rfam database...	0.47	0.42	0.53	39	47821	43	2	33	8	54
ASE_00394	RNaseP_bact_a links to Rfam database...	0.80	0.77	0.82	72	46883	20	3	13	4	21
ASE_00395	RNaseP_bact_a links to Rfam database...	0.70	0.65	0.74	55	41542	30	1	18	11	29
ASE_00396	RNaseP_bact_a links to Rfam database...	0.54	0.52	0.57	43	41540	38	2	31	5	40
ASE_00397	RNaseP_bact_a links to Rfam database...	0.59	0.58	0.61	61	54515	47	6	33	8	44
ASE_00398	RNaseP_bact_a links to Rfam database...	0.61	0.56	0.66	58	55857	39	1	29	9	46
ASE_00400	RNaseP_bact_a links to Rfam database...	0.66	0.64	0.68	68	57870	38	1	31	6	38
ASE_00401	RNaseP_bact_a links to Rfam database...	0.64	0.63	0.65	80	76904	46	6	38	2	46
ASE_00402	RNaseP_bact_a links to Rfam database...	0.73	0.67	0.79	57	42414	18	2	13	3	28
ASE_00403	RNaseP_bact_a links to Rfam database...	0.45	0.42	0.47	45	55850	57	5	45	7	62
ASE_00404	RNaseP_bact_a links to Rfam database...	0.53	0.52	0.54	44	42990	46	6	31	9	41
ASE_00406	RNaseP_bact_a links to Rfam database...	0.80	0.77	0.83	72	48741	26	3	12	11	22
ASE_00411	RNaseP_bact_a links to Rfam database...	0.46	0.46	0.47	41	49367	54	6	41	7	48
ASE_00412	RNaseP_bact_a links to Rfam database...	0.49	0.48	0.52	50	58214	51	8	39	4	55
ASE_00413	RNaseP_bact_a links to Rfam database...	0.64	0.67	0.62	54	44464	34	11	22	1	27
ASE_00415	RNaseP_bact_a links to Rfam database...	0.68	0.66	0.69	68	54848	33	5	25	3	35
ASE_00416	RNaseP_bact_a links to Rfam database...	0.70	0.67	0.73	85	77305	41	2	29	10	42
ASE_00419	RNaseP_bact_a links to Rfam database...	0.84	0.81	0.88	83	54852	14	3	8	3	20
ASE_00422	RNaseP_bact_a links to Rfam database...	0.79	0.77	0.81	72	46882	24	3	14	7	22
ASE_00423	RNaseP_bact_a links to Rfam database...	0.61	0.61	0.60	67	56841	46	10	35	1	42
ASE_00427	RNaseP_nuc links to Rfam database...	0.13	0.17	0.10	8	40677	84	26	44	14	38
ASE_00428	RNaseP_bact_a links to Rfam database...	0.78	0.75	0.82	94	76521	29	4	17	8	31
ASE_00430	RNaseP_bact_a links to Rfam database...	0.77	0.74	0.81	72	46882	24	3	14	7	25
ASE_00437	RNaseP_bact_a links to Rfam database...	0.43	0.41	0.47	55	79283	69	1	62	6	80
ASE_00441	RNaseP_bact_a links to Rfam database...	0.78	0.74	0.82	83	64160	27	2	16	9	29
ASE_00448	RNaseP_bact_a links to Rfam database...	0.22	0.23	0.22	26	64143	99	8	84	7	86
ASE_00451	RNaseP_bact_a links to Rfam database...	0.62	0.60	0.65	75	70760	48	3	38	7	50
CRW_00548	5S_rRNA links to Rfam database...	0.87	0.82	0.94	31	7348	5	0	2	3	7
CRW_00552	5S_rRNA links to Rfam database...	0.81	0.74	0.88	29	7107	6	1	3	2	10
CRW_00555	5S_rRNA links to Rfam database...	0.70	0.63	0.78	25	7594	8	0	7	1	15
CRW_00567	5S_rRNA links to Rfam database...	0.68	0.68	0.69	27	7464	15	4	8	3	13
CRW_00570	5S_rRNA links to Rfam database...	0.88	0.89	0.87	33	6865	6	0	5	1	4
CRW_00573	5S_rRNA links to Rfam database...	0.25	0.25	0.26	10	7101	29	1	28	0	30
CRW_01484	5S_rRNA links to Rfam database...	0.25	0.26	0.26	10	7464	31	4	25	2	29
CRW_01485	5S_rRNA links to Rfam database...	0.18	0.18	0.18	7	7465	31	2	29	0	32
CRW_01487	5S_rRNA links to Rfam database...	0.44	0.44	0.45	18	7463	22	3	19	0	23
CRW_01489	5S_rRNA links to Rfam database...	0.44	0.44	0.45	17	7465	24	2	19	3	22
CRW_01491	5S_rRNA links to Rfam database...	0.77	0.65	0.90	28	8354	4	0	3	1	15
CRW_01492	5S_rRNA links to Rfam database...	0.77	0.74	0.82	31	7588	10	0	7	3	11
CRW_01494	5S_rRNA links to Rfam database...	0.73	0.65	0.81	26	7108	7	0	6	1	14
CRW_01497	5S_rRNA links to Rfam database...	0.80	0.73	0.88	29	7107	6	0	4	2	11
CRW_01498	5S_rRNA links to Rfam database...	0.92	0.88	0.95	38	8088	4	0	2	2	5
CRW_01499	5S_rRNA links to Rfam database...	0.33	0.34	0.33	14	7959	30	2	26	2	27
CRW_01500	5S_rRNA links to Rfam database...	0.92	0.84	1.00	32	7718	1	0	0	1	6
CRW_01501	5S_rRNA links to Rfam database...	0.61	0.60	0.63	27	8472	17	1	15	1	18
CRW_01508	5S_rRNA links to Rfam database...	0.93	0.86	1.00	36	7965	6	0	0	6	6
CRW_01532	5S_rRNA links to Rfam database...	0.77	0.76	0.78	28	7104	10	0	8	2	9
CRW_01533	5S_rRNA links to Rfam database...	0.79	0.78	0.81	29	7104	10	0	7	3	8
CRW_01534	5S_rRNA links to Rfam database...	0.75	0.78	0.73	29	7100	12	3	8	1	8
CRW_01535	5S_rRNA links to Rfam database...	0.91	0.84	1.00	31	7109	2	0	0	2	6
CRW_01536	5S_rRNA links to Rfam database...	0.90	0.86	0.94	32	6987	3	0	2	1	5
CRW_01537	5S_rRNA links to Rfam database...	0.70	0.68	0.74	25	7106	11	1	8	2	12
CRW_01539	5S_rRNA links to Rfam database...	0.82	0.81	0.83	30	7104	9	0	6	3	7
CRW_01540	5S_rRNA links to Rfam database...	0.35	0.35	0.35	13	7103	24	2	22	0	24
CRW_01541	5S_rRNA links to Rfam database...	0.92	0.86	0.97	32	7107	3	0	1	2	5
CRW_01542	5S_rRNA links to Rfam database...	0.23	0.24	0.23	9	7101	30	3	27	0	28
CRW_01544	5S_rRNA links to Rfam database...	0.69	0.68	0.71	25	7105	13	0	10	3	12
CRW_01548	5S_rRNA links to Rfam database...	0.89	0.84	0.94	31	6988	4	0	2	2	6
CRW_01555	5S_rRNA links to Rfam database...	0.75	0.70	0.81	26	9013	8	0	6	2	11
CRW_01556	5S_rRNA links to Rfam database...	0.71	0.70	0.72	26	7104	14	0	10	4	11
CRW_01557	5S_rRNA links to Rfam database...	0.85	0.81	0.88	30	7106	6	0	4	2	7
CRW_01559	5S_rRNA links to Rfam database...	0.82	0.78	0.85	29	7226	10	0	5	5	8
CRW_01562	5S_rRNA links to Rfam database...	0.87	0.81	0.94	30	7108	2	0	2	0	7
CRW_01563	5S_rRNA links to Rfam database...	0.21	0.19	0.23	7	6873	25	2	21	2	30
CRW_01566	5S_rRNA links to Rfam database...	0.54	0.54	0.54	20	7103	17	1	16	0	17
CRW_01568	5S_rRNA links to Rfam database...	0.78	0.78	0.78	29	7103	9	0	8	1	8
CRW_01569	5S_rRNA links to Rfam database...	0.79	0.78	0.81	29	7104	9	0	7	2	8
CRW_01570	5S_rRNA links to Rfam database...	0.82	0.78	0.85	29	7106	8	0	5	3	8
CRW_01572	5S_rRNA links to Rfam database...	0.22	0.22	0.23	8	6986	27	6	21	0	29
CRW_01573	5S_rRNA links to Rfam database...	0.91	0.84	1.00	31	7229	4	0	0	4	6
CRW_01578	5S_rRNA links to Rfam database...	0.91	0.84	1.00	31	7109	4	0	0	4	6
CRW_01580	5S_rRNA links to Rfam database...	0.24	0.24	0.25	9	7104	27	5	22	0	28
CRW_01581	5S_rRNA links to Rfam database...	0.30	0.27	0.33	10	7110	21	0	20	1	27
CRW_01583	5S_rRNA links to Rfam database...	0.80	0.76	0.85	28	7107	6	0	5	1	9
CRW_01584	5S_rRNA links to Rfam database...	0.87	0.84	0.91	31	7106	7	0	3	4	6
CRW_01590	5S_rRNA links to Rfam database...	0.23	0.24	0.23	9	7101	30	4	26	0	28
CRW_01593	5S_rRNA links to Rfam database...	0.82	0.78	0.85	29	7106	6	0	5	1	8
CRW_01595	5S_rRNA links to Rfam database...	0.59	0.54	0.65	20	8484	13	0	11	2	17
CRW_01599	5S_rRNA links to Rfam database...	0.22	0.24	0.21	9	7097	34	5	29	0	28
CRW_01603	5S_rRNA links to Rfam database...	0.81	0.76	0.88	28	7108	6	0	4	2	9
CRW_01605	5S_rRNA links to Rfam database...	-0.01	0.00	0.00	0	7103	37	5	32	0	37
CRW_01606	5S_rRNA links to Rfam database...	0.55	0.51	0.59	19	7108	14	0	13	1	18
CRW_01608	5S_rRNA links to Rfam database...	0.53	0.51	0.56	19	8351	17	0	15	2	18
CRW_01616	5S_rRNA links to Rfam database...	0.82	0.78	0.85	29	7106	7	0	5	2	8
CRW_01617	5S_rRNA links to Rfam database...	0.89	0.84	0.94	31	7107	7	0	2	5	6
CRW_01620	5S_rRNA links to Rfam database...	0.86	0.86	0.86	32	6984	6	0	5	1	5
CRW_01621	5S_rRNA links to Rfam database...	0.68	0.65	0.71	24	7106	11	0	10	1	13
CRW_01623	5S_rRNA links to Rfam database...	0.90	0.86	0.94	32	7106	4	0	2	2	5
CRW_01625	5S_rRNA links to Rfam database...	0.86	0.86	0.86	32	7103	7	0	5	2	5
PDB_00012	mir-TAR links to Rfam database...	1.00	1.00	1.00	7	399	4	0	0	4	0
PDB_00070	tRNA links to Rfam database...	0.65	0.67	0.64	16	2825	10	1	8	1	8
PDB_00213	Gammaretro_CES links to Rfam database...	0.94	0.88	1.00	36	5014	0	0	0	0	5
PDB_00229	tRNA links to Rfam database...	0.96	0.91	1.00	21	2754	0	0	0	0	2
PDB_00327	tRNA links to Rfam database...	0.66	0.70	0.64	16	3056	11	0	9	2	7
PDB_00362	tRNA links to Rfam database...	0.98	0.95	1.00	21	2829	0	0	0	0	1
PDB_00402	tRNA links to Rfam database...	0.29	0.30	0.28	7	2750	18	2	16	0	16
PDB_00431	tRNA links to Rfam database...	0.77	0.75	0.79	15	2192	5	0	4	1	5
PDB_00474	tRNA links to Rfam database...	0.96	0.91	1.00	21	2680	0	0	0	0	2
PDB_00553	mir-TAR links to Rfam database...	1.00	1.00	1.00	11	454	1	0	0	1	0
PDB_00571	tRNA links to Rfam database...	0.60	0.60	0.60	15	3296	10	6	4	0	10
PDB_00667	tRNA links to Rfam database...	0.68	0.68	0.68	15	2828	9	4	3	2	7
PDB_00741	Entero_5_CRE links to Rfam database...	0.87	0.76	1.00	13	690	0	0	0	0	4
PDB_00810	s2m links to Rfam database...	0.76	0.59	1.00	10	1071	0	0	0	0	7
PDB_00828	Purine links to Rfam database...	0.86	0.78	0.95	21	2463	1	0	1	0	6
PDB_00829	Purine links to Rfam database...	0.86	0.75	1.00	18	2260	0	0	0	0	6
PDB_00876	HIV_FE links to Rfam database...	0.97	0.95	1.00	19	971	0	0	0	0	1
PDB_01002	tRNA links to Rfam database...	0.88	0.90	0.86	19	2753	5	3	0	2	2
PDB_01020	Purine links to Rfam database...	0.86	0.74	1.00	17	2261	1	0	0	1	6
PDB_01050	UnaL2 links to Rfam database...	0.88	0.85	0.92	11	618	3	0	1	2	2
PDB_01053	tRNA links to Rfam database...	1.00	1.00	1.00	16	1362	1	0	0	1	0
PDB_01073	SAM links to Rfam database...	0.86	0.74	1.00	25	4346	1	0	0	1	9
PDB_01114	TPP links to Rfam database...	0.50	0.41	0.61	11	2832	7	0	7	0	16
PDB_01152	HIV_FS2 links to Rfam database...	0.88	0.79	1.00	11	550	0	0	0	0	3
PDB_01236	ykoK links to Rfam database...	0.74	0.70	0.78	38	11579	14	0	11	3	16
RFA_00389	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	3	0	0	3	0
RFA_00390	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	3	0	0	3	0
RFA_00391	Hammerhead_3 links to Rfam database...	0.93	0.87	1.00	13	1418	2	0	0	2	2
RFA_00396	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	2	0	0	2	1
RFA_00402	Hammerhead_3 links to Rfam database...	0.33	0.33	0.33	5	1416	11	0	10	1	10
RFA_00409	Hammerhead_3 links to Rfam database...	0.67	0.60	0.75	9	1419	5	1	2	2	6
RFA_00416	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1470	3	0	0	3	0
RFA_00433	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	3	0	0	3	0
RFA_00434	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00436	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00440	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1470	3	0	0	3	0
RFA_00442	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	3	0	0	3	0
RFA_00444	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1525	2	0	0	2	0
RFA_00583	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4935	14	0	0	14	0
RFA_00584	Y_RNA links to Rfam database...	0.87	0.87	0.87	13	2911	14	0	2	12	2
RFA_00585	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4836	14	0	0	14	0
RFA_00586	Y_RNA links to Rfam database...	0.97	0.93	1.00	14	3902	16	0	0	16	1
RFA_00587	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4836	12	0	0	12	0
RFA_00588	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4545	16	0	0	16	0
RFA_00589	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4356	15	0	0	15	0
RFA_00594	Y_RNA links to Rfam database...	0.90	0.87	0.93	13	2761	10	0	1	9	2
RFA_00596	Y_RNA links to Rfam database...	0.00	0.00	0.00	0	5976	32	5	14	13	15
RFA_00599	Telomerase-vert links to Rfam database...	0.73	0.72	0.73	80	101366	58	10	19	29	31
RFA_00601	Telomerase-vert links to Rfam database...	0.49	0.51	0.46	58	99110	84	27	40	17	56
RFA_00602	Telomerase-vert links to Rfam database...	0.66	0.68	0.65	79	101353	63	21	22	20	37
RFA_00658	Hammerhead_1 links to Rfam database...	0.59	0.50	0.70	7	1118	5	0	3	2	7
RFA_00664	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	980	11	0	10	1	14
RFA_00667	Hammerhead_1 links to Rfam database...	0.30	0.29	0.33	4	978	8	1	7	0	10
RFA_00668	Hammerhead_1 links to Rfam database...	0.41	0.43	0.40	6	975	9	0	9	0	8
RFA_00672	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	895	9	0	8	1	13
RFA_00673	Hammerhead_1 links to Rfam database...	0.44	0.36	0.56	5	1119	5	0	4	1	9
RFA_00674	Hammerhead_1 links to Rfam database...	0.42	0.36	0.50	5	1118	5	0	5	0	9
RFA_00675	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	980	11	0	10	1	14
RFA_00677	Hammerhead_1 links to Rfam database...	0.46	0.43	0.50	6	978	7	0	6	1	8
RFA_00678	Hammerhead_1 links to Rfam database...	0.37	0.29	0.50	4	938	4	0	4	0	10
RFA_00680	Hammerhead_1 links to Rfam database...	0.74	0.71	0.77	10	1115	7	0	3	4	4
RFA_00704	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	988	3	0	2	1	14
RFA_00707	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	1027	8	0	8	0	14
RFA_00715	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	933	13	0	13	0	14
RFA_00717	Hammerhead_1 links to Rfam database...	0.64	0.64	0.64	9	889	5	0	5	0	5
RFA_00730	s2m links to Rfam database...	0.69	0.67	0.73	8	892	4	1	2	1	4
RFA_00731	s2m links to Rfam database...	0.81	0.67	1.00	8	895	1	0	0	1	4
RFA_00733	s2m links to Rfam database...	0.81	0.67	1.00	8	895	1	0	0	1	4
RFA_00734	s2m links to Rfam database...	0.73	0.67	0.80	8	893	3	0	2	1	4
RFA_00736	s2m links to Rfam database...	0.81	0.67	1.00	8	895	1	0	0	1	4
RFA_00737	s2m links to Rfam database...	0.81	0.67	1.00	8	895	1	0	0	1	4
RFA_00745	s2m links to Rfam database...	0.81	0.67	1.00	8	938	1	0	0	1	4
RFA_00749	s2m links to Rfam database...	0.81	0.67	1.00	8	895	1	0	0	1	4
RFA_00758	s2m links to Rfam database...	0.76	0.58	1.00	7	896	0	0	0	0	5
RFA_00762	s2m links to Rfam database...	0.64	0.67	0.62	8	890	5	1	4	0	4
RFA_00763	s2m links to Rfam database...	0.81	0.67	1.00	8	895	1	0	0	1	4
RFA_00764	s2m links to Rfam database...	0.81	0.67	1.00	8	895	1	0	0	1	4
RFA_00765	s2m links to Rfam database...	0.81	0.67	1.00	8	895	1	0	0	1	4
RFA_00786	Gammaretro_CES links to Rfam database...	0.64	0.66	0.64	21	5017	12	2	10	0	11
RFA_00791	Gammaretro_CES links to Rfam database...	0.86	0.84	0.87	27	5120	6	2	2	2	5
RFA_00792	Gammaretro_CES links to Rfam database...	0.95	0.94	0.97	30	5019	3	0	1	2	2
RFA_00801	Gammaretro_CES links to Rfam database...	0.76	0.78	0.74	25	5016	11	2	7	2	7
SPR_00007	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00009	tRNA links to Rfam database...	-0.01	0.00	0.00	0	2831	19	1	18	0	20
SPR_00010	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00012	tRNA links to Rfam database...	0.23	0.25	0.22	5	2827	18	2	16	0	15
SPR_00013	tRNA links to Rfam database...	0.97	0.95	1.00	19	2831	0	0	0	0	1
SPR_00016	tRNA links to Rfam database...	0.93	1.00	0.88	21	2826	3	3	0	0	0
SPR_00017	tRNA links to Rfam database...	0.93	1.00	0.88	21	2826	3	3	0	0	0
SPR_00025	tRNA links to Rfam database...	0.68	0.70	0.67	14	2905	9	0	7	2	6
SPR_00026	tRNA links to Rfam database...	0.71	0.76	0.67	16	2902	11	0	8	3	5
SPR_00027	tRNA links to Rfam database...	0.77	0.71	0.83	15	2908	4	1	2	1	6
SPR_00036	tRNA links to Rfam database...	0.91	1.00	0.83	20	2751	5	4	0	1	0
SPR_00045	tRNA links to Rfam database...	0.95	0.95	0.95	21	2828	2	0	1	1	1
SPR_00064	tRNA links to Rfam database...	0.58	0.57	0.60	12	2830	8	2	6	0	9
SPR_00065	tRNA links to Rfam database...	0.92	1.00	0.84	21	2825	4	4	0	0	0
SPR_00066	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00068	tRNA links to Rfam database...	0.93	1.00	0.88	21	2826	4	3	0	1	0
SPR_00070	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	1	0	0	1	0
SPR_00074	tRNA links to Rfam database...	0.78	0.80	0.76	16	2829	6	1	4	1	4
SPR_00079	tRNA links to Rfam database...	1.00	1.00	1.00	19	2466	2	0	0	2	0
SPR_00086	tRNA links to Rfam database...	0.55	0.57	0.55	12	2828	10	4	6	0	9
SPR_00087	tRNA links to Rfam database...	0.46	0.45	0.47	9	2831	10	4	6	0	11
SPR_00088	tRNA links to Rfam database...	0.46	0.45	0.47	9	2831	10	4	6	0	11
SPR_00089	tRNA links to Rfam database...	0.46	0.45	0.47	9	2831	10	4	6	0	11
SPR_00090	tRNA links to Rfam database...	0.39	0.40	0.38	8	2829	13	4	9	0	12
SPR_00091	tRNA links to Rfam database...	0.46	0.45	0.47	9	2831	10	4	6	0	11
SPR_00095	tRNA links to Rfam database...	0.55	0.57	0.55	12	2828	10	4	6	0	9
SPR_00111	tRNA links to Rfam database...	1.00	1.00	1.00	21	2680	1	0	0	1	0
SPR_00112	tRNA links to Rfam database...	0.93	1.00	0.88	21	2677	5	3	0	2	0
SPR_00115	tRNA links to Rfam database...	0.83	0.81	0.85	17	2681	4	1	2	1	4
SPR_00117	tRNA links to Rfam database...	0.67	0.71	0.63	15	2826	10	1	8	1	6
SPR_00139	tRNA links to Rfam database...	0.92	1.00	0.84	21	2901	6	4	0	2	0
SPR_00153	tRNA links to Rfam database...	0.37	0.38	0.36	8	2904	17	3	11	3	13
SPR_00155	tRNA links to Rfam database...	0.56	0.57	0.55	12	2904	11	3	7	1	9
SPR_00156	tRNA links to Rfam database...	0.51	0.57	0.46	12	2900	15	5	9	1	9
SPR_00176	tRNA links to Rfam database...	0.54	0.60	0.50	12	2826	13	2	10	1	8
SPR_00177	tRNA links to Rfam database...	0.68	0.76	0.62	16	2824	11	3	7	1	5
SPR_00178	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	1	0	0	1	0
SPR_00191	tRNA links to Rfam database...	0.18	0.19	0.19	4	2829	17	4	13	0	17
SPR_00200	tRNA links to Rfam database...	0.74	0.76	0.73	16	2828	7	3	3	1	5
SPR_00224	tRNA links to Rfam database...	0.45	0.50	0.42	10	3717	19	5	9	5	10
SPR_00271	tRNA links to Rfam database...	0.52	0.57	0.48	12	2825	13	3	10	0	9
SPR_00273	tRNA links to Rfam database...	0.29	0.33	0.27	7	2824	20	2	17	1	14
SPR_00276	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	3	0	0	3	0
SPR_00277	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	1	0	0	1	0
SPR_00294	tRNA links to Rfam database...	0.55	0.57	0.55	12	2828	11	3	7	1	9
SPR_00295	tRNA links to Rfam database...	0.95	0.95	0.95	20	2754	3	0	1	2	1
SPR_00314	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	3	0	0	3	0
SPR_00315	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	2	0	0	2	0
SPR_00317	tRNA links to Rfam database...	0.56	0.60	0.52	12	2903	11	5	6	0	8
SPR_00318	tRNA links to Rfam database...	0.93	1.00	0.88	21	2902	5	3	0	2	0
SPR_00321	tRNA links to Rfam database...	0.93	1.00	0.88	21	2979	3	3	0	0	0
SPR_00333	tRNA links to Rfam database...	0.93	1.00	0.88	21	2751	3	3	0	0	0
SPR_00352	tRNA links to Rfam database...	0.71	0.76	0.67	16	2902	9	3	5	1	5
SPR_00353	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00357	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	2	0	0	2	0
SPR_00358	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00370	tRNA links to Rfam database...	0.14	0.14	0.16	3	2756	16	2	14	0	18
SPR_00386	tRNA links to Rfam database...	0.75	0.75	0.75	15	4166	9	0	5	4	5
SPR_00414	tRNA links to Rfam database...	0.89	0.95	0.83	20	3546	9	3	1	5	1
SPR_00415	tRNA links to Rfam database...	0.47	0.48	0.48	10	3549	15	5	6	4	11
SPR_00417	tRNA links to Rfam database...	0.65	0.68	0.63	15	3546	14	3	6	5	7
SPR_00418	tRNA links to Rfam database...	0.65	0.68	0.63	15	3546	14	3	6	5	7
SPR_00434	tRNA links to Rfam database...	0.91	0.95	0.87	20	2827	3	3	0	0	1
SPR_00435	tRNA links to Rfam database...	0.76	0.76	0.76	16	2829	5	0	5	0	5
SPR_00436	tRNA links to Rfam database...	0.93	1.00	0.88	21	2826	6	3	0	3	0
SPR_00437	tRNA links to Rfam database...	0.93	1.00	0.88	21	2751	5	3	0	2	0
SPR_00438	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	1	0	0	1	0
SPR_00452	tRNA links to Rfam database...	0.67	0.76	0.59	16	2823	12	4	7	1	5
SPR_00455	tRNA links to Rfam database...	0.31	0.33	0.30	7	2827	16	6	10	0	14
SPR_00456	tRNA links to Rfam database...	0.53	0.57	0.50	12	2826	15	6	6	3	9
SPR_00476	tRNA links to Rfam database...	0.98	0.95	1.00	20	2755	0	0	0	0	1
SPR_00479	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	1	0	0	1	0
SPR_00482	tRNA links to Rfam database...	0.74	0.76	0.73	16	2679	7	0	6	1	5
SPR_00483	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	2	0	0	2	0
SPR_00487	tRNA links to Rfam database...	0.71	0.73	0.70	16	2678	8	0	7	1	6
SPR_00493	tRNA links to Rfam database...	0.68	0.68	0.68	15	2753	7	2	5	0	7
SPR_00496	tRNA links to Rfam database...	0.93	1.00	0.88	21	2751	3	3	0	0	0
SPR_00497	tRNA links to Rfam database...	0.98	0.95	1.00	20	2755	0	0	0	0	1
SPR_00502	tRNA links to Rfam database...	0.86	0.86	0.86	18	2905	5	0	3	2	3
SPR_00504	tRNA links to Rfam database...	0.93	1.00	0.87	20	2827	3	3	0	0	0
SPR_00505	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00506	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	1	0	0	1	0
SPR_00509	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	1	0	0	1	0
SPR_00512	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00513	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	2	0	0	2	0
SPR_00518	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	2	0	0	2	0
SPR_00548	tRNA links to Rfam database...	0.33	0.33	0.33	7	3382	14	2	12	0	14
SPR_00557	tRNA links to Rfam database...	0.41	0.43	0.41	9	2828	13	1	12	0	12
SPR_00561	tRNA links to Rfam database...	0.40	0.43	0.39	9	2827	14	1	13	0	12
SPR_00590	tRNA links to Rfam database...	0.53	0.60	0.48	12	2978	15	4	9	2	8
SPR_00593	tRNA links to Rfam database...	0.63	0.63	0.63	12	2756	8	2	5	1	7
SPR_00595	tRNA links to Rfam database...	0.73	0.76	0.70	16	2752	8	3	4	1	5
SPR_00598	tRNA links to Rfam database...	0.76	0.81	0.71	17	2979	9	2	5	2	4
SPR_00610	tRNA links to Rfam database...	0.53	0.57	0.50	12	2532	12	0	12	0	9
SPR_00620	tRNA links to Rfam database...	0.76	0.81	0.71	17	2979	9	5	2	2	4
SPR_00721	tRNA links to Rfam database...	0.93	0.90	0.95	19	2906	5	0	1	4	2
SPR_00722	tRNA links to Rfam database...	0.76	0.80	0.73	16	2904	6	4	2	0	4
SPR_00758	tRNA links to Rfam database...	0.40	0.48	0.34	10	2974	20	7	12	1	11
SPR_00760	tRNA links to Rfam database...	0.86	0.95	0.77	20	3544	9	4	2	3	1
SPR_00777	tRNA links to Rfam database...	0.80	0.80	0.80	16	2608	6	2	2	2	4
SPR_00867	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00868	tRNA links to Rfam database...	0.79	0.81	0.77	17	2904	7	1	4	2	4
SPR_00943	tRNA links to Rfam database...	0.76	0.85	0.68	17	2531	10	5	3	2	3
SPR_00957	tRNA links to Rfam database...	0.78	0.76	0.80	16	2983	7	0	4	3	5
SPR_01040	tRNA links to Rfam database...	0.79	0.81	0.77	17	2753	8	1	4	3	4
SPR_01088	tRNA links to Rfam database...	0.65	0.67	0.64	14	2904	9	2	6	1	7
SPR_01095	tRNA links to Rfam database...	0.76	0.76	0.76	16	2829	6	0	5	1	5
SPR_01106	tRNA links to Rfam database...	0.51	0.52	0.50	11	2534	11	3	8	0	10
SPR_01117	tRNA links to Rfam database...	0.76	0.76	0.76	16	2982	7	0	5	2	5
SPR_01157	tRNA links to Rfam database...	0.81	0.81	0.81	17	2754	6	0	4	2	4
SRP_00006	Metazoa_SRP links to Rfam database...	0.87	0.86	0.87	87	45653	16	1	12	3	14
SRP_00008	Bacteria_small_SRP links to Rfam database...	0.60	0.60	0.60	15	2901	11	0	10	1	10
SRP_00011	Plant_SRP links to Rfam database...	0.58	0.56	0.61	58	46265	39	2	35	2	46
SRP_00015	Plant_SRP links to Rfam database...	0.83	0.81	0.86	80	46267	23	0	13	10	19
SRP_00020	Bacteria_small_SRP links to Rfam database...	0.86	0.88	0.85	29	5531	6	1	4	1	4
SRP_00024	Bacteria_large_SRP links to Rfam database...	0.38	0.39	0.37	34	37582	59	8	51	0	53
SRP_00026	Bacteria_large_SRP links to Rfam database...	0.68	0.69	0.66	61	36764	37	3	28	6	27
SRP_00027	Bacteria_large_SRP links to Rfam database...	0.77	0.76	0.78	66	37043	24	0	19	5	21
SRP_00030	Bacteria_large_SRP links to Rfam database...	0.80	0.82	0.79	72	36765	24	3	16	5	16
SRP_00031	Bacteria_large_SRP links to Rfam database...	0.72	0.73	0.71	65	36224	31	4	22	5	24
SRP_00037	Bacteria_large_SRP links to Rfam database...	0.44	0.45	0.44	39	36496	51	9	41	1	48
SRP_00038	Bacteria_small_SRP links to Rfam database...	0.19	0.18	0.21	6	5021	23	2	21	0	27
SRP_00042	Bacteria_small_SRP links to Rfam database...	0.45	0.48	0.43	12	3977	18	0	16	2	13
SRP_00044	Bacteria_small_SRP links to Rfam database...	0.89	0.88	0.90	28	6074	4	1	2	1	4
SRP_00046	Bacteria_small_SRP links to Rfam database...	0.97	0.97	0.97	31	4721	2	0	1	1	1
SRP_00050	Metazoa_SRP links to Rfam database...	0.95	0.93	0.98	92	44756	7	0	2	5	7
SRP_00051	Bacteria_small_SRP links to Rfam database...	0.30	0.30	0.31	9	5431	22	2	18	2	21
SRP_00054	Bacteria_small_SRP links to Rfam database...	0.22	0.22	0.23	7	5534	24	3	21	0	25
SRP_00058	Bacteria_small_SRP links to Rfam database...	0.90	0.91	0.89	31	5743	6	1	3	2	3
SRP_00066	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	45353	98	11	87	0	100
SRP_00072	Bacteria_small_SRP links to Rfam database...	0.30	0.31	0.30	9	6298	27	1	20	6	20
SRP_00074	Bacteria_small_SRP links to Rfam database...	0.16	0.17	0.16	5	6523	31	4	23	4	24
SRP_00075	Bacteria_small_SRP links to Rfam database...	0.59	0.59	0.59	20	5531	16	1	13	2	14
SRP_00077	Bacteria_small_SRP links to Rfam database...	0.24	0.24	0.24	9	6632	29	4	25	0	28
SRP_00081	Bacteria_small_SRP links to Rfam database...	0.69	0.74	0.64	23	5529	13	1	12	0	8
SRP_00084	Bacteria_small_SRP links to Rfam database...	0.87	0.88	0.86	30	5425	5	1	4	0	4
SRP_00086	Metazoa_SRP links to Rfam database...	0.59	0.61	0.58	61	44147	46	4	41	1	39
SRP_00088	Bacteria_large_SRP links to Rfam database...	0.67	0.71	0.64	63	34093	38	4	31	3	26
SRP_00089	Bacteria_large_SRP links to Rfam database...	0.74	0.76	0.73	68	35685	26	3	22	1	22
SRP_00090	Bacteria_large_SRP links to Rfam database...	0.30	0.30	0.30	27	35420	65	5	59	1	63
SRP_00094	Bacteria_small_SRP links to Rfam database...	0.84	0.88	0.81	21	4069	7	1	4	2	3
SRP_00095	Bacteria_small_SRP links to Rfam database...	0.85	0.88	0.81	22	3978	7	1	4	2	3
SRP_00098	Bacteria_small_SRP links to Rfam database...	0.69	0.70	0.68	26	6403	14	1	11	2	11
SRP_00102	Metazoa_SRP links to Rfam database...	0.76	0.74	0.78	75	44455	25	1	20	4	26
SRP_00103	Metazoa_SRP links to Rfam database...	0.80	0.78	0.81	80	45352	23	2	17	4	22
SRP_00105	Bacteria_small_SRP links to Rfam database...	0.29	0.29	0.29	10	5531	24	1	23	0	24
SRP_00107	Bacteria_small_SRP links to Rfam database...	0.13	0.16	0.12	3	3629	25	5	18	2	16
SRP_00121	Bacteria_small_SRP links to Rfam database...	0.77	0.72	0.82	18	4256	7	0	4	3	7
SRP_00128	Bacteria_small_SRP links to Rfam database...	0.76	0.81	0.73	29	6746	13	1	10	2	7
SRP_00132	Bacteria_small_SRP links to Rfam database...	0.69	0.72	0.66	21	4819	14	0	11	3	8
SRP_00134	Bacteria_large_SRP links to Rfam database...	0.55	0.55	0.55	16	5966	17	3	10	4	13
SRP_00141	Bacteria_small_SRP links to Rfam database...	0.94	0.95	0.93	39	6286	4	1	2	1	2
SRP_00152	Plant_SRP links to Rfam database...	0.69	0.66	0.72	68	45658	33	1	26	6	35
SRP_00161	Bacteria_small_SRP links to Rfam database...	0.36	0.41	0.33	9	2823	18	5	13	0	13
SRP_00162	Bacteria_small_SRP links to Rfam database...	0.87	0.87	0.87	20	2903	4	0	3	1	3
SRP_00163	Bacteria_small_SRP links to Rfam database...	0.39	0.42	0.37	11	3456	19	4	15	0	15
SRP_00164	Bacteria_small_SRP links to Rfam database...	0.93	0.94	0.92	33	6867	5	1	2	2	2
SRP_00170	Bacteria_small_SRP links to Rfam database...	0.55	0.56	0.54	14	4069	13	0	12	1	11
SRP_00171	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	45354	97	15	82	0	88
SRP_00173	Bacteria_large_SRP links to Rfam database...	0.79	0.81	0.78	73	38132	28	1	20	7	17
SRP_00174	Bacteria_large_SRP links to Rfam database...	0.79	0.81	0.76	70	38689	28	7	15	6	16
SRP_00178	Plant_SRP links to Rfam database...	0.30	0.29	0.30	30	45653	72	4	66	2	72
SRP_00179	Plant_SRP links to Rfam database...	0.72	0.70	0.75	73	45959	28	6	18	4	32
SRP_00181	Plant_SRP links to Rfam database...	0.30	0.29	0.32	30	45961	67	2	63	2	72
SRP_00182	Plant_SRP links to Rfam database...	0.74	0.73	0.76	74	45958	27	3	21	3	27
SRP_00184	Plant_SRP links to Rfam database...	0.31	0.30	0.32	30	45961	68	5	60	3	70
SRP_00188	Plant_SRP links to Rfam database...	0.21	0.20	0.22	16	31051	58	3	55	0	63
SRP_00194	Bacteria_small_SRP links to Rfam database...	0.77	0.81	0.74	17	3217	11	0	6	5	4
SRP_00200	Bacteria_small_SRP links to Rfam database...	0.80	0.78	0.82	28	6869	7	1	5	1	8
SRP_00209	Bacteria_small_SRP links to Rfam database...	0.63	0.59	0.67	16	4632	9	1	7	1	11
SRP_00213	Bacteria_small_SRP links to Rfam database...	0.65	0.64	0.67	16	4162	10	1	7	2	9
SRP_00215	Bacteria_small_SRP links to Rfam database...	0.82	0.80	0.83	20	3216	4	0	4	0	5
SRP_00227	Bacteria_small_SRP links to Rfam database...	0.88	0.87	0.90	27	5121	3	1	2	0	4
SRP_00228	Metazoa_SRP links to Rfam database...	0.96	0.95	0.97	90	45358	12	0	3	9	5
SRP_00231	Bacteria_small_SRP links to Rfam database...	0.87	0.88	0.86	30	5425	6	1	4	1	4
SRP_00233	Bacteria_small_SRP links to Rfam database...	1.00	1.00	1.00	33	5118	0	0	0	0	0
SRP_00234	Bacteria_large_SRP links to Rfam database...	0.80	0.79	0.81	68	36231	24	1	15	8	18
SRP_00250	Bacteria_small_SRP links to Rfam database...	0.78	0.81	0.76	29	6748	12	1	8	3	7
SRP_00251	Bacteria_small_SRP links to Rfam database...	0.75	0.78	0.72	28	6982	14	1	10	3	8
SRP_00266	Bacteria_small_SRP links to Rfam database...	0.72	0.72	0.72	21	4627	9	1	7	1	8
SRP_00268	Bacteria_small_SRP links to Rfam database...	0.56	0.59	0.53	16	4156	15	4	10	1	11
SRP_00269	Bacteria_small_SRP links to Rfam database...	0.59	0.61	0.59	20	5016	14	3	11	0	13
SRP_00270	Bacteria_small_SRP links to Rfam database...	0.44	0.45	0.44	14	4624	18	2	16	0	17
SRP_00271	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	3213	27	1	26	0	24
SRP_00273	Bacteria_small_SRP links to Rfam database...	0.89	0.90	0.88	36	6745	7	1	4	2	4
SRP_00274	Bacteria_small_SRP links to Rfam database...	0.93	0.95	0.92	36	6864	5	1	2	2	2
SRP_00295	Bacteria_small_SRP links to Rfam database...	0.96	0.97	0.95	37	6864	5	1	1	3	1
SRP_00303	Bacteria_small_SRP links to Rfam database...	0.81	0.84	0.77	27	6635	10	1	7	2	5
SRP_00308	Bacteria_large_SRP links to Rfam database...	0.73	0.75	0.71	66	36222	30	4	23	3	22
SRP_00310	Bacteria_small_SRP links to Rfam database...	0.87	0.87	0.87	20	2903	5	0	3	2	3
SRP_00312	Bacteria_small_SRP links to Rfam database...	0.41	0.37	0.45	10	4164	12	1	11	0	17
SRP_00315	Bacteria_small_SRP links to Rfam database...	0.87	0.87	0.87	20	2903	3	0	3	0	3
SRP_00317	Metazoa_SRP links to Rfam database...	0.93	0.90	0.96	88	45058	14	0	4	10	10
SRP_00318	Bacteria_small_SRP links to Rfam database...	0.87	0.87	0.87	20	2980	4	0	3	1	3
SRP_00325	Bacteria_small_SRP links to Rfam database...	1.00	1.00	1.00	33	4338	0	0	0	0	0
SRP_00326	Bacteria_small_SRP links to Rfam database...	0.56	0.55	0.59	17	5021	12	3	9	0	14
SRP_00333	Bacteria_small_SRP links to Rfam database...	0.89	0.85	0.94	29	5120	2	0	2	0	5
SRP_00335	Bacteria_large_SRP links to Rfam database...	0.32	0.44	0.23	17	35171	78	26	31	21	22
SRP_00337	Bacteria_large_SRP links to Rfam database...	0.75	0.76	0.75	69	35419	25	2	21	2	22
SRP_00338	Bacteria_small_SRP links to Rfam database...	0.97	0.97	0.97	35	5424	1	0	1	0	1
SRP_00341	Bacteria_small_SRP links to Rfam database...	0.40	0.42	0.38	13	4719	21	3	18	0	18
SRP_00342	Bacteria_small_SRP links to Rfam database...	0.59	0.60	0.58	15	3979	16	1	10	5	10
SRP_00347	Metazoa_SRP links to Rfam database...	0.77	0.77	0.77	74	46569	29	5	17	7	22
SRP_00350	Bacteria_small_SRP links to Rfam database...	0.85	0.85	0.85	23	3889	5	1	3	1	4
SRP_00357	Bacteria_small_SRP links to Rfam database...	0.96	0.97	0.95	35	5319	4	1	1	2	1
SRP_00358	Bacteria_small_SRP links to Rfam database...	0.93	0.91	0.94	32	6294	4	1	1	2	3
SRP_00367	Bacteria_small_SRP links to Rfam database...	0.96	0.97	0.94	34	6750	3	1	1	1	1
SRP_00368	Metazoa_SRP links to Rfam database...	0.87	0.83	0.91	81	43867	15	0	8	7	17
SRP_00369	Bacteria_small_SRP links to Rfam database...	0.89	0.89	0.89	31	5743	5	1	3	1	4
SRP_00383	Bacteria_small_SRP links to Rfam database...	0.13	0.13	0.15	3	3220	17	4	13	0	21
TMR_00017	tmRNA links to Rfam database...	0.50	0.49	0.51	50	67062	55	11	38	6	52
TMR_00018	tmRNA links to Rfam database...	0.34	0.36	0.32	33	64516	76	17	54	5	59
TMR_00038	tmRNA links to Rfam database...	0.22	0.22	0.23	24	71147	87	13	69	5	86
TMR_00042	tmRNA links to Rfam database...	0.34	0.35	0.33	34	62733	71	6	62	3	64
TMR_00046	tmRNA links to Rfam database...	0.27	0.28	0.27	27	62734	81	11	63	7	69
TMR_00048	tmRNA links to Rfam database...	0.26	0.27	0.24	26	64873	87	15	66	6	69
TMR_00080	tmRNA links to Rfam database...	0.39	0.40	0.38	38	70401	62	18	43	1	58
TMR_00082	tmRNA links to Rfam database...	0.69	0.71	0.67	68	67795	38	16	17	5	28
TMR_00123	tmRNA links to Rfam database...	0.46	0.48	0.45	48	66324	63	13	45	5	53
TMR_00137	tmRNA links to Rfam database...	0.24	0.25	0.24	22	60983	79	12	58	9	67
TMR_00142	tmRNA links to Rfam database...	0.55	0.56	0.55	57	70772	62	10	37	15	45
TMR_00207	tmRNA links to Rfam database...	0.34	0.35	0.33	36	72280	79	10	64	5	67
TMR_00257	tmRNA links to Rfam database...	0.12	0.11	0.13	11	67074	81	6	70	5	87
TMR_00271	tmRNA links to Rfam database...	0.59	0.56	0.61	51	64178	43	9	23	11	40
TMR_00332	tmRNA links to Rfam database...	0.53	0.51	0.55	50	67070	47	10	31	6	49
TMR_00366	tmRNA links to Rfam database...	0.57	0.55	0.59	55	67803	49	8	30	11	45
TMR_00378	tmRNA links to Rfam database...	0.26	0.28	0.25	27	67786	94	24	59	11	70
TMR_00399	tmRNA links to Rfam database...	0.35	0.34	0.36	32	64891	64	12	45	7	62
TMR_00404	tmRNA links to Rfam database...	0.36	0.40	0.33	37	67416	86	29	46	11	55
TMR_00427	tmRNA links to Rfam database...	0.46	0.44	0.48	43	67439	54	11	35	8	54
TMR_00443	tmRNA links to Rfam database...	0.50	0.48	0.53	50	67066	52	13	32	7	54
TMR_00451	tmRNA links to Rfam database...	0.18	0.19	0.17	17	63445	88	21	63	4	72
TMR_00458	tmRNA links to Rfam database...	0.46	0.44	0.47	41	63459	54	11	35	8	52
TMR_00469	tmRNA links to Rfam database...	0.51	0.53	0.50	53	64514	57	18	35	4	47
TMR_00472	tmRNA links to Rfam database...	0.46	0.45	0.46	44	64524	64	10	42	12	53
TMR_00519	tmRNA links to Rfam database...	0.40	0.38	0.42	36	63105	64	10	39	15	59
TMR_00520	tmRNA links to Rfam database...	0.51	0.49	0.52	49	63096	56	15	30	11	50
TMR_00522	tmRNA links to Rfam database...	0.39	0.39	0.38	38	63091	70	16	45	9	59
TMR_00528	tmRNA links to Rfam database...	0.30	0.29	0.31	28	63099	73	18	45	10	69
TMR_00540	tmRNA links to Rfam database...	0.36	0.35	0.37	36	73438	74	14	48	12	68
TMR_00568	tmRNA links to Rfam database...	0.31	0.30	0.31	30	60629	73	6	61	6	69
TMR_00571	tmRNA links to Rfam database...	0.62	0.61	0.64	60	60632	46	6	28	12	39
TMR_00580	tmRNA links to Rfam database...	0.69	0.66	0.72	66	60634	37	3	23	11	34
TMR_00584	tmRNA links to Rfam database...	0.58	0.57	0.59	55	60982	53	5	33	15	42
TMR_00586	tmRNA links to Rfam database...	0.52	0.51	0.54	49	60984	52	8	34	10	48
TMR_00616	tmRNA links to Rfam database...	0.39	0.40	0.38	40	67057	69	13	51	5	59
TMR_00699	tmRNA links to Rfam database...	0.45	0.42	0.48	43	67072	52	7	39	6	59
TMR_00702	tmRNA links to Rfam database...	0.40	0.38	0.42	38	67071	58	13	39	6	62
TMR_00703	tmRNA links to Rfam database...	0.48	0.47	0.48	47	67430	56	11	40	5	52

^top

Performance of CMfinder(20) - scored lower in this pairwise comparison

1. Total counts & total scores for CMfinder(20)

Total Base Pair Counts
Total TP	12594
Total TN	15431933
Total FP	3841
Total FP CONTRA	280
Total FP INCONS	2978
Total FP COMP	583
Total FN	20541

Total Scores
MCC	0.549
Average MCC ± 95% Confidence Intervals	0.621 ± 0.019
Sensitivity	0.380
Positive Predictive Value	0.794
Nr of predictions	561

^top

2. Individual counts for CMfinder(20) [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00004	RNaseP_bact_a links to Rfam database...	0.50	0.29	0.88	28	47863	4	0	4	0	69
ASE_00005	RNaseP_bact_a links to Rfam database...	0.41	0.26	0.67	30	57925	15	0	15	0	87
ASE_00006	RNaseP_bact_a links to Rfam database...	0.54	0.40	0.74	37	47536	13	1	12	0	56
ASE_00007	RNaseP_bact_a links to Rfam database...	0.64	0.48	0.85	53	59623	11	1	8	2	57
ASE_00012	RNaseP_bact_a links to Rfam database...	0.41	0.18	0.96	22	73897	1	0	1	0	101
ASE_00018	RNaseP_bact_a links to Rfam database...	0.55	0.40	0.75	54	80529	20	1	17	2	80
ASE_00020	RNaseP_bact_a links to Rfam database...	0.40	0.24	0.68	30	73876	16	1	13	2	96
ASE_00021	RNaseP_bact_a links to Rfam database...	0.37	0.18	0.80	28	104161	7	1	6	0	132
ASE_00022	RNaseP_bact_b links to Rfam database...	0.45	0.28	0.71	35	82979	14	1	13	0	89
ASE_00028	RNaseP_bact_b links to Rfam database...	0.59	0.41	0.84	52	84604	11	3	7	1	74
ASE_00035	RNaseP_bact_a links to Rfam database...	0.46	0.29	0.74	34	70454	12	1	11	0	84
ASE_00037	RNaseP_bact_a links to Rfam database...	0.55	0.42	0.72	46	59276	18	0	18	0	64
ASE_00038	RNaseP_bact_a links to Rfam database...	0.51	0.37	0.73	37	53577	14	1	13	0	64
ASE_00040	RNaseP_bact_a links to Rfam database...	0.44	0.24	0.80	32	78963	9	1	7	1	101
ASE_00041	RNaseP_bact_a links to Rfam database...	0.54	0.38	0.77	41	57577	12	0	12	0	67
ASE_00042	RNaseP_bact_a links to Rfam database...	0.40	0.18	0.90	26	90071	3	0	3	0	119
ASE_00044	RNaseP_bact_a links to Rfam database...	0.45	0.29	0.71	30	54573	13	0	12	1	75
ASE_00045	RNaseP_bact_b links to Rfam database...	0.59	0.46	0.76	37	47229	12	2	10	0	43
ASE_00064	RNaseP_bact_a links to Rfam database...	0.48	0.30	0.75	27	45415	10	1	8	1	62
ASE_00068	RNaseP_bact_a links to Rfam database...	0.61	0.44	0.86	37	37632	6	0	6	0	48
ASE_00074	RNaseP_bact_a links to Rfam database...	0.63	0.44	0.91	52	67839	6	0	5	1	67
ASE_00075	RNaseP_bact_a links to Rfam database...	0.37	0.17	0.80	28	108776	7	1	6	0	134
ASE_00077	RNaseP_bact_a links to Rfam database...	0.59	0.36	0.97	31	45118	1	0	1	0	55
ASE_00078	RNaseP_bact_a links to Rfam database...	0.72	0.61	0.84	51	43010	11	1	9	1	32
ASE_00080	RNaseP_bact_a links to Rfam database...	0.37	0.24	0.58	30	71579	22	0	22	0	93
ASE_00081	RNaseP_bact_a links to Rfam database...	0.51	0.31	0.86	30	49735	6	0	5	1	67
ASE_00082	RNaseP_bact_a links to Rfam database...	0.56	0.39	0.82	45	70445	17	0	10	7	71
ASE_00083	RNaseP_bact_a links to Rfam database...	0.50	0.27	0.91	30	62448	4	0	3	1	80
ASE_00084	RNaseP_bact_a links to Rfam database...	0.49	0.34	0.69	34	53579	15	0	15	0	65
ASE_00087	RNaseP_bact_a links to Rfam database...	0.41	0.21	0.79	30	88372	8	0	8	0	114
ASE_00090	RNaseP_bact_a links to Rfam database...	0.46	0.33	0.66	33	55561	18	0	17	1	68
ASE_00092	RNaseP_bact_a links to Rfam database...	0.55	0.37	0.81	42	63494	11	0	10	1	71
ASE_00099	RNaseP_bact_a links to Rfam database...	0.55	0.40	0.76	48	64557	17	0	15	2	72
ASE_00104	RNaseP_bact_a links to Rfam database...	0.47	0.30	0.73	36	64212	14	0	13	1	83
ASE_00105	RNaseP_bact_a links to Rfam database...	0.42	0.23	0.78	25	64229	7	1	6	0	86
ASE_00107	RNaseP_bact_a links to Rfam database...	0.62	0.45	0.85	57	73086	10	0	10	0	70
ASE_00114	RNaseP_bact_b links to Rfam database...	0.41	0.32	0.52	25	45403	25	1	22	2	52
ASE_00115	RNaseP_bact_a links to Rfam database...	0.51	0.29	0.91	29	54583	4	0	3	1	72
ASE_00118	RNaseP_bact_a links to Rfam database...	0.65	0.48	0.88	49	60670	9	1	6	2	53
ASE_00119	RNaseP_bact_a links to Rfam database...	0.44	0.29	0.67	31	62789	17	3	12	2	77
ASE_00123	RNaseP_bact_a links to Rfam database...	0.45	0.28	0.71	24	38469	14	0	10	4	61
ASE_00125	RNaseP_bact_a links to Rfam database...	0.55	0.40	0.76	35	39294	12	1	10	1	53
ASE_00126	RNaseP_bact_a links to Rfam database...	0.66	0.56	0.78	46	40411	14	0	13	1	36
ASE_00128	RNaseP_bact_a links to Rfam database...	0.51	0.29	0.91	29	53269	4	0	3	1	71
ASE_00129	RNaseP_bact_a links to Rfam database...	0.51	0.27	0.97	30	62804	1	0	1	0	81
ASE_00131	RNaseP_bact_a links to Rfam database...	0.53	0.34	0.83	29	39305	7	0	6	1	56
ASE_00134	RNaseP_bact_a links to Rfam database...	0.63	0.48	0.82	46	50347	11	0	10	1	49
ASE_00135	RNaseP_bact_a links to Rfam database...	0.47	0.34	0.65	37	63133	20	1	19	0	72
ASE_00136	RNaseP_bact_a links to Rfam database...	0.63	0.50	0.81	46	48148	13	0	11	2	46
ASE_00137	RNaseP_bact_a links to Rfam database...	0.67	0.50	0.89	49	48461	7	2	4	1	49
ASE_00138	RNaseP_bact_a links to Rfam database...	0.74	0.63	0.86	51	40411	9	1	7	1	30
ASE_00140	RNaseP_bact_a links to Rfam database...	0.35	0.18	0.69	22	70844	11	0	10	1	103
ASE_00142	RNaseP_bact_a links to Rfam database...	0.46	0.22	0.96	27	67133	3	0	1	2	95
ASE_00146	RNaseP_bact_a links to Rfam database...	0.52	0.38	0.70	47	70809	20	1	19	0	77
ASE_00153	RNaseP_nuc links to Rfam database...	0.09	0.05	0.16	4	57605	39	5	16	18	69
ASE_00161	RNaseP_bact_b links to Rfam database...	0.51	0.37	0.71	32	53583	14	1	12	1	55
ASE_00163	RNaseP_bact_a links to Rfam database...	0.67	0.54	0.83	50	53241	10	1	9	0	43
ASE_00165	RNaseP_bact_a links to Rfam database...	0.54	0.31	0.97	31	52943	1	0	1	0	70
ASE_00170	RNaseP_bact_a links to Rfam database...	0.52	0.32	0.83	30	48792	8	0	6	2	63
ASE_00171	RNaseP_bact_a links to Rfam database...	0.64	0.48	0.85	45	48463	9	1	7	1	49
ASE_00172	RNaseP_bact_a links to Rfam database...	0.53	0.38	0.74	40	58942	15	1	13	1	66
ASE_00174	RNaseP_bact_a links to Rfam database...	0.39	0.19	0.81	21	61049	5	2	3	0	88
ASE_00175	RNaseP_bact_a links to Rfam database...	0.46	0.32	0.65	34	59979	18	0	18	0	73
ASE_00179	RNaseP_bact_a links to Rfam database...	0.55	0.45	0.67	38	44196	19	3	16	0	46
ASE_00180	RNaseP_bact_a links to Rfam database...	0.69	0.57	0.84	57	51292	11	0	11	0	43
ASE_00181	RNaseP_bact_a links to Rfam database...	0.50	0.30	0.82	32	57591	8	0	7	1	74
ASE_00182	RNaseP_bact_a links to Rfam database...	0.40	0.26	0.64	35	84200	20	1	19	0	101
ASE_00183	RNaseP_bact_a links to Rfam database...	0.42	0.26	0.67	29	61382	14	0	14	0	84
ASE_00184	RNaseP_bact_a links to Rfam database...	0.63	0.47	0.86	48	54559	8	1	7	0	54
ASE_00185	RNaseP_bact_a links to Rfam database...	0.35	0.18	0.70	23	73503	10	0	10	0	105
ASE_00186	RNaseP_bact_a links to Rfam database...	0.44	0.27	0.71	36	78952	15	0	15	0	96
ASE_00190	RNaseP_bact_b links to Rfam database...	0.32	0.18	0.57	16	45423	13	1	11	1	74
ASE_00197	RNaseP_bact_a links to Rfam database...	0.45	0.26	0.78	38	89204	11	0	11	0	107
ASE_00198	RNaseP_bact_a links to Rfam database...	0.62	0.46	0.84	47	52594	9	1	8	0	55
ASE_00203	RNaseP_bact_a links to Rfam database...	0.44	0.24	0.79	23	46636	6	2	4	0	73
ASE_00212	RNaseP_bact_a links to Rfam database...	0.43	0.27	0.69	40	93903	18	1	17	0	108
ASE_00214	RNaseP_bact_a links to Rfam database...	0.62	0.47	0.81	48	56221	13	0	11	2	55
ASE_00215	RNaseP_bact_a links to Rfam database...	0.42	0.27	0.66	27	48475	15	0	14	1	72
ASE_00216	RNaseP_bact_a links to Rfam database...	0.72	0.60	0.86	49	39283	8	5	3	0	33
ASE_00217	RNaseP_bact_a links to Rfam database...	0.54	0.38	0.77	34	40426	12	0	10	2	56
ASE_00221	RNaseP_bact_a links to Rfam database...	0.56	0.38	0.80	45	64564	11	1	10	0	72
ASE_00228	RNaseP_bact_a links to Rfam database...	0.41	0.24	0.70	21	46941	10	2	7	1	65
ASE_00229	RNaseP_bact_a links to Rfam database...	0.57	0.44	0.75	38	42435	14	0	13	1	49
ASE_00231	RNaseP_bact_a links to Rfam database...	0.61	0.45	0.83	43	47843	9	2	7	0	53
ASE_00232	RNaseP_bact_a links to Rfam database...	0.66	0.56	0.78	47	38443	13	4	9	0	37
ASE_00234	RNaseP_bact_a links to Rfam database...	0.45	0.27	0.74	35	75419	12	1	11	0	94
ASE_00238	RNaseP_bact_a links to Rfam database...	0.46	0.22	0.96	25	64235	1	0	1	0	89
ASE_00241	RNaseP_bact_a links to Rfam database...	0.77	0.68	0.88	59	43889	8	0	8	0	28
ASE_00242	RNaseP_bact_a links to Rfam database...	0.58	0.41	0.81	46	61018	13	1	10	2	66
ASE_00248	RNaseP_bact_a links to Rfam database...	0.56	0.39	0.80	44	62426	11	1	10	0	70
ASE_00254	RNaseP_bact_a links to Rfam database...	0.65	0.55	0.76	45	36797	14	3	11	0	37
ASE_00255	RNaseP_bact_a links to Rfam database...	0.42	0.22	0.82	28	74657	6	1	5	0	102
ASE_00257	RNaseP_bact_a links to Rfam database...	0.51	0.36	0.73	35	50992	14	0	13	1	62
ASE_00263	RNaseP_bact_a links to Rfam database...	0.50	0.33	0.78	39	70450	12	0	11	1	81
ASE_00267	RNaseP_bact_a links to Rfam database...	0.62	0.47	0.82	41	45100	10	0	9	1	47
ASE_00270	RNaseP_bact_a links to Rfam database...	0.47	0.27	0.80	35	72346	9	0	9	0	93
ASE_00274	RNaseP_bact_a links to Rfam database...	0.56	0.42	0.75	43	55554	14	1	13	0	60
ASE_00277	RNaseP_bact_a links to Rfam database...	0.49	0.27	0.89	25	48177	3	0	3	0	66
ASE_00279	RNaseP_bact_a links to Rfam database...	0.50	0.27	0.93	27	53272	2	0	2	0	74
ASE_00280	RNaseP_bact_a links to Rfam database...	0.45	0.30	0.67	29	51960	15	0	14	1	69
ASE_00281	RNaseP_bact_a links to Rfam database...	0.49	0.30	0.81	26	44519	6	0	6	0	62
ASE_00282	RNaseP_bact_a links to Rfam database...	0.45	0.30	0.68	38	77759	18	1	17	0	89
ASE_00283	RNaseP_bact_a links to Rfam database...	0.46	0.26	0.82	28	61742	8	0	6	2	79
ASE_00284	RNaseP_bact_a links to Rfam database...	0.41	0.24	0.70	26	58274	11	0	11	0	82
ASE_00285	RNaseP_bact_a links to Rfam database...	0.43	0.22	0.82	27	68973	6	0	6	0	95
ASE_00286	RNaseP_bact_a links to Rfam database...	0.66	0.51	0.85	47	46610	9	0	8	1	45
ASE_00287	RNaseP_bact_a links to Rfam database...	0.44	0.31	0.63	32	54895	20	1	18	1	71
ASE_00292	RNaseP_bact_a links to Rfam database...	0.50	0.35	0.72	48	81743	19	0	19	0	90
ASE_00294	RNaseP_bact_a links to Rfam database...	0.37	0.19	0.74	32	114438	12	0	11	1	139
ASE_00296	RNaseP_bact_a links to Rfam database...	0.35	0.18	0.67	26	91767	13	0	13	0	119
ASE_00297	RNaseP_bact_a links to Rfam database...	0.40	0.24	0.65	24	52938	14	0	13	1	74
ASE_00298	RNaseP_bact_a links to Rfam database...	0.54	0.38	0.75	43	67471	14	1	13	0	70
ASE_00305	RNaseP_bact_b links to Rfam database...	0.52	0.39	0.70	33	54568	15	1	13	1	52
ASE_00318	RNaseP_bact_b links to Rfam database...	0.49	0.31	0.80	36	80155	10	3	6	1	82
ASE_00321	RNaseP_bact_b links to Rfam database...	0.54	0.41	0.72	36	54565	15	1	13	1	52
ASE_00328	RNaseP_bact_b links to Rfam database...	0.48	0.34	0.69	38	72716	20	4	13	3	74
ASE_00332	RNaseP_bact_a links to Rfam database...	0.41	0.20	0.87	27	81779	4	0	4	0	111
ASE_00335	RNaseP_bact_b links to Rfam database...	0.46	0.32	0.67	37	75411	19	2	16	1	79
ASE_00340	RNaseP_bact_a links to Rfam database...	0.47	0.36	0.62	31	46006	19	5	14	0	54
ASE_00342	RNaseP_bact_a links to Rfam database...	0.57	0.41	0.81	47	62423	13	0	11	2	68
ASE_00353	RNaseP_bact_a links to Rfam database...	0.52	0.39	0.68	42	57908	21	1	19	1	65
ASE_00361	RNaseP_bact_a links to Rfam database...	0.40	0.21	0.75	27	75430	10	1	8	1	100
ASE_00362	RNaseP_bact_a links to Rfam database...	0.52	0.41	0.66	37	48149	19	0	19	0	54
ASE_00363	RNaseP_bact_a links to Rfam database...	0.48	0.30	0.78	28	51324	9	4	4	1	66
ASE_00364	RNaseP_bact_a links to Rfam database...	0.43	0.25	0.76	26	54251	8	0	8	0	79
ASE_00366	RNaseP_bact_a links to Rfam database...	0.43	0.33	0.56	32	58596	25	3	22	0	66
ASE_00367	RNaseP_bact_a links to Rfam database...	0.50	0.30	0.84	26	43040	5	0	5	0	60
ASE_00369	RNaseP_bact_a links to Rfam database...	0.55	0.38	0.79	41	55893	11	0	11	0	66
ASE_00370	RNaseP_bact_a links to Rfam database...	0.69	0.57	0.83	48	41847	11	1	9	1	36
ASE_00372	RNaseP_bact_a links to Rfam database...	0.60	0.43	0.84	43	51952	8	0	8	0	57
ASE_00374	RNaseP_bact_a links to Rfam database...	0.52	0.32	0.85	28	44817	6	0	5	1	60
ASE_00376	RNaseP_bact_a links to Rfam database...	0.42	0.25	0.70	26	56916	11	0	11	0	79
ASE_00377	RNaseP_bact_a links to Rfam database...	0.43	0.25	0.75	27	57594	10	0	9	1	80
ASE_00379	RNaseP_bact_a links to Rfam database...	0.60	0.44	0.83	39	46009	9	0	8	1	50
ASE_00382	RNaseP_bact_a links to Rfam database...	0.64	0.51	0.81	43	41852	11	1	9	1	41
ASE_00383	RNaseP_bact_a links to Rfam database...	0.55	0.38	0.78	40	54564	11	1	10	0	65
ASE_00384	RNaseP_bact_a links to Rfam database...	0.49	0.28	0.87	26	48486	5	0	4	1	66
ASE_00386	RNaseP_bact_a links to Rfam database...	0.54	0.31	0.94	30	50371	3	0	2	1	66
ASE_00387	RNaseP_bact_a links to Rfam database...	0.42	0.23	0.75	24	55913	9	0	8	1	80
ASE_00388	RNaseP_bact_a links to Rfam database...	0.68	0.55	0.84	49	45695	10	1	8	1	40
ASE_00390	RNaseP_bact_a links to Rfam database...	0.55	0.33	0.93	28	42165	3	0	2	1	57
ASE_00393	RNaseP_bact_a links to Rfam database...	0.58	0.45	0.74	42	47838	15	1	14	0	51
ASE_00394	RNaseP_bact_a links to Rfam database...	0.54	0.31	0.94	29	46940	3	0	2	1	64
ASE_00395	RNaseP_bact_a links to Rfam database...	0.61	0.48	0.78	40	41565	11	0	11	0	44
ASE_00396	RNaseP_bact_a links to Rfam database...	0.56	0.34	0.93	28	41586	3	0	2	1	55
ASE_00397	RNaseP_bact_a links to Rfam database...	0.55	0.38	0.78	40	54564	12	0	11	1	65
ASE_00398	RNaseP_bact_a links to Rfam database...	0.44	0.23	0.86	24	55917	5	0	4	1	80
ASE_00400	RNaseP_bact_a links to Rfam database...	0.58	0.43	0.78	46	57911	13	1	12	0	60
ASE_00401	RNaseP_bact_a links to Rfam database...	0.43	0.21	0.90	26	76999	4	0	3	1	100
ASE_00402	RNaseP_bact_a links to Rfam database...	0.54	0.36	0.79	31	42447	8	0	8	0	54
ASE_00403	RNaseP_bact_a links to Rfam database...	0.61	0.42	0.88	45	55894	6	1	5	0	62
ASE_00404	RNaseP_bact_a links to Rfam database...	0.68	0.56	0.83	48	43013	10	1	9	0	37
ASE_00406	RNaseP_bact_a links to Rfam database...	0.59	0.41	0.85	39	48782	9	0	7	2	55
ASE_00411	RNaseP_bact_a links to Rfam database...	0.44	0.33	0.59	29	49406	20	1	19	0	60
ASE_00412	RNaseP_bact_a links to Rfam database...	0.53	0.36	0.79	38	58263	11	0	10	1	67
ASE_00413	RNaseP_bact_a links to Rfam database...	0.51	0.37	0.70	30	44508	14	3	10	1	51
ASE_00415	RNaseP_bact_a links to Rfam database...	0.39	0.20	0.75	21	54918	8	0	7	1	82
ASE_00416	RNaseP_bact_a links to Rfam database...	0.42	0.21	0.82	27	77388	7	0	6	1	100
ASE_00419	RNaseP_bact_a links to Rfam database...	0.55	0.41	0.75	42	54890	14	2	12	0	61
ASE_00422	RNaseP_bact_a links to Rfam database...	0.57	0.40	0.79	38	46923	11	0	10	1	56
ASE_00423	RNaseP_bact_a links to Rfam database...	0.39	0.24	0.63	26	56912	15	0	15	0	83
ASE_00427	RNaseP_nuc links to Rfam database...	0.37	0.30	0.45	14	40724	41	4	13	24	32
ASE_00428	RNaseP_bact_a links to Rfam database...	0.56	0.40	0.79	50	76573	13	1	12	0	75
ASE_00430	RNaseP_bact_a links to Rfam database...	0.46	0.25	0.86	24	46943	4	0	4	0	73
ASE_00437	RNaseP_bact_a links to Rfam database...	0.58	0.39	0.87	53	79340	8	0	8	0	82
ASE_00441	RNaseP_bact_a links to Rfam database...	0.53	0.36	0.80	40	64211	11	1	9	1	72
ASE_00448	RNaseP_bact_a links to Rfam database...	0.51	0.33	0.79	37	64214	11	0	10	1	75
ASE_00451	RNaseP_bact_a links to Rfam database...	0.54	0.35	0.83	44	70823	10	1	8	1	81
CRW_00548	5S_rRNA links to Rfam database...	0.73	0.63	0.86	24	7353	4	1	3	0	14
CRW_00552	5S_rRNA links to Rfam database...	0.66	0.44	1.00	17	7123	0	0	0	0	22
CRW_00555	5S_rRNA links to Rfam database...	0.68	0.53	0.88	21	7602	3	0	3	0	19
CRW_00567	5S_rRNA links to Rfam database...	0.79	0.63	1.00	25	7478	1	0	0	1	15
CRW_00570	5S_rRNA links to Rfam database...	0.73	0.62	0.85	23	6876	4	0	4	0	14
CRW_00573	5S_rRNA links to Rfam database...	0.74	0.55	1.00	22	7118	0	0	0	0	18
CRW_01484	5S_rRNA links to Rfam database...	0.69	0.56	0.85	22	7477	5	0	4	1	17
CRW_01485	5S_rRNA links to Rfam database...	0.70	0.54	0.91	21	7480	3	0	2	1	18
CRW_01487	5S_rRNA links to Rfam database...	0.48	0.34	0.67	14	7482	7	2	5	0	27
CRW_01489	5S_rRNA links to Rfam database...	0.60	0.49	0.73	19	7477	7	1	6	0	20
CRW_01491	5S_rRNA links to Rfam database...	0.64	0.49	0.84	21	8360	5	0	4	1	22
CRW_01492	5S_rRNA links to Rfam database...	0.70	0.60	0.83	25	7596	5	0	5	0	17
CRW_01494	5S_rRNA links to Rfam database...	0.54	0.38	0.79	15	7121	6	0	4	2	25
CRW_01497	5S_rRNA links to Rfam database...	0.57	0.38	0.88	15	7123	2	0	2	0	25
CRW_01498	5S_rRNA links to Rfam database...	0.66	0.53	0.82	23	8100	6	0	5	1	20
CRW_01499	5S_rRNA links to Rfam database...	0.64	0.51	0.81	21	7975	5	0	5	0	20
CRW_01500	5S_rRNA links to Rfam database...	0.32	0.26	0.40	10	7725	16	2	13	1	28
CRW_01501	5S_rRNA links to Rfam database...	0.59	0.44	0.80	20	8490	5	0	5	0	25
CRW_01508	5S_rRNA links to Rfam database...	0.33	0.21	0.50	9	7983	11	2	7	2	33
CRW_01532	5S_rRNA links to Rfam database...	0.71	0.59	0.85	22	7114	8	0	4	4	15
CRW_01533	5S_rRNA links to Rfam database...	0.66	0.49	0.90	18	7120	2	0	2	0	19
CRW_01534	5S_rRNA links to Rfam database...	0.81	0.73	0.90	27	7110	6	0	3	3	10
CRW_01535	5S_rRNA links to Rfam database...	0.68	0.51	0.90	19	7119	2	0	2	0	18
CRW_01536	5S_rRNA links to Rfam database...	0.85	0.73	1.00	27	6994	1	0	0	1	10
CRW_01537	5S_rRNA links to Rfam database...	0.68	0.51	0.90	19	7119	5	0	2	3	18
CRW_01539	5S_rRNA links to Rfam database...	0.72	0.65	0.80	24	7110	12	0	6	6	13
CRW_01540	5S_rRNA links to Rfam database...	0.68	0.49	0.95	18	7121	4	0	1	3	19
CRW_01541	5S_rRNA links to Rfam database...	0.62	0.43	0.89	16	7122	4	0	2	2	21
CRW_01542	5S_rRNA links to Rfam database...	0.68	0.51	0.90	19	7119	4	0	2	2	18
CRW_01544	5S_rRNA links to Rfam database...	0.59	0.46	0.77	17	7118	5	0	5	0	20
CRW_01548	5S_rRNA links to Rfam database...	0.73	0.62	0.85	23	6994	6	0	4	2	14
CRW_01555	5S_rRNA links to Rfam database...	0.82	0.70	0.96	26	9018	5	0	1	4	11
CRW_01556	5S_rRNA links to Rfam database...	0.62	0.43	0.89	16	7122	2	0	2	0	21
CRW_01557	5S_rRNA links to Rfam database...	0.80	0.65	1.00	24	7116	1	0	0	1	13
CRW_01559	5S_rRNA links to Rfam database...	0.76	0.68	0.86	25	7231	7	0	4	3	12
CRW_01562	5S_rRNA links to Rfam database...	0.82	0.73	0.93	27	7111	3	0	2	1	10
CRW_01563	5S_rRNA links to Rfam database...	0.68	0.51	0.90	19	6882	3	0	2	1	18
CRW_01566	5S_rRNA links to Rfam database...	0.59	0.35	1.00	13	7127	0	0	0	0	24
CRW_01568	5S_rRNA links to Rfam database...	0.62	0.46	0.85	17	7120	5	0	3	2	20
CRW_01569	5S_rRNA links to Rfam database...	0.66	0.49	0.90	18	7120	2	0	2	0	19
CRW_01570	5S_rRNA links to Rfam database...	0.74	0.59	0.92	22	7116	6	0	2	4	15
CRW_01572	5S_rRNA links to Rfam database...	0.70	0.57	0.88	21	6997	7	0	3	4	16
CRW_01573	5S_rRNA links to Rfam database...	0.82	0.73	0.93	27	7231	4	0	2	2	10
CRW_01578	5S_rRNA links to Rfam database...	0.81	0.70	0.93	26	7112	6	0	2	4	11
CRW_01580	5S_rRNA links to Rfam database...	0.76	0.62	0.92	23	7115	4	0	2	2	14
CRW_01581	5S_rRNA links to Rfam database...	0.74	0.59	0.92	22	7116	3	0	2	1	15
CRW_01583	5S_rRNA links to Rfam database...	0.81	0.70	0.93	26	7112	3	0	2	1	11
CRW_01584	5S_rRNA links to Rfam database...	0.66	0.51	0.86	19	7118	4	0	3	1	18
CRW_01590	5S_rRNA links to Rfam database...	0.76	0.62	0.92	23	7115	3	0	2	1	14
CRW_01593	5S_rRNA links to Rfam database...	0.68	0.51	0.90	19	7119	4	0	2	2	18
CRW_01595	5S_rRNA links to Rfam database...	0.68	0.62	0.74	23	8484	11	0	8	3	14
CRW_01599	5S_rRNA links to Rfam database...	0.79	0.62	1.00	23	7117	1	0	0	1	14
CRW_01603	5S_rRNA links to Rfam database...	0.62	0.43	0.89	16	7122	2	0	2	0	21
CRW_01605	5S_rRNA links to Rfam database...	0.64	0.46	0.89	17	7121	4	0	2	2	20
CRW_01606	5S_rRNA links to Rfam database...	0.66	0.49	0.90	18	7120	5	0	2	3	19
CRW_01608	5S_rRNA links to Rfam database...	0.73	0.62	0.85	23	8358	5	0	4	1	14
CRW_01616	5S_rRNA links to Rfam database...	0.79	0.68	0.93	25	7113	6	0	2	4	12
CRW_01617	5S_rRNA links to Rfam database...	0.74	0.62	0.88	23	7114	6	0	3	3	14
CRW_01620	5S_rRNA links to Rfam database...	0.83	0.76	0.90	28	6990	5	0	3	2	9
CRW_01621	5S_rRNA links to Rfam database...	0.60	0.43	0.84	16	7121	3	0	3	0	21
CRW_01623	5S_rRNA links to Rfam database...	0.70	0.57	0.88	21	7116	4	0	3	1	16
CRW_01625	5S_rRNA links to Rfam database...	0.76	0.62	0.92	23	7115	2	0	2	0	14
PDB_00012	mir-TAR links to Rfam database...	1.00	1.00	1.00	7	399	2	0	0	2	0
PDB_00070	tRNA links to Rfam database...	0.76	0.58	1.00	14	2836	0	0	0	0	10
PDB_00213	Gammaretro_CES links to Rfam database...	0.85	0.73	1.00	30	5020	0	0	0	0	11
PDB_00229	tRNA links to Rfam database...	0.88	0.78	1.00	18	2757	0	0	0	0	5
PDB_00327	tRNA links to Rfam database...	0.93	0.87	1.00	20	3061	0	0	0	0	3
PDB_00362	tRNA links to Rfam database...	0.95	0.91	1.00	20	2830	0	0	0	0	2
PDB_00402	tRNA links to Rfam database...	0.93	0.87	1.00	20	2755	0	0	0	0	3
PDB_00431	tRNA links to Rfam database...	0.95	0.90	1.00	18	2193	0	0	0	0	2
PDB_00474	tRNA links to Rfam database...	0.88	0.78	1.00	18	2683	0	0	0	0	5
PDB_00553	mir-TAR links to Rfam database...	0.90	0.82	1.00	9	456	0	0	0	0	2
PDB_00571	tRNA links to Rfam database...	0.87	0.80	0.95	20	3300	1	0	1	0	5
PDB_00667	tRNA links to Rfam database...	0.71	0.59	0.87	13	2835	3	0	2	1	9
PDB_00741	Entero_5_CRE links to Rfam database...	0.84	0.71	1.00	12	691	0	0	0	0	5
PDB_00810	s2m links to Rfam database...	0.76	0.59	1.00	10	1071	0	0	0	0	7
PDB_00828	Purine links to Rfam database...	0.84	0.70	1.00	19	2466	0	0	0	0	8
PDB_00829	Purine links to Rfam database...	0.84	0.71	1.00	17	2261	0	0	0	0	7
PDB_00876	HIV_FE links to Rfam database...	0.84	0.75	0.94	15	974	1	0	1	0	5
PDB_01002	tRNA links to Rfam database...	0.75	0.57	1.00	12	2763	2	0	0	2	9
PDB_01020	Purine links to Rfam database...	0.78	0.61	1.00	14	2264	0	0	0	0	9
PDB_01050	UnaL2 links to Rfam database...	0.78	0.62	1.00	8	622	1	0	0	1	5
PDB_01053	tRNA links to Rfam database...	0.90	0.81	1.00	13	1365	0	0	0	0	3
PDB_01073	SAM links to Rfam database...	0.59	0.35	1.00	12	4359	1	0	0	1	22
PDB_01114	TPP links to Rfam database...	0.51	0.37	0.71	10	2836	4	0	4	0	17
PDB_01152	HIV_FS2 links to Rfam database...	0.92	0.86	1.00	12	549	0	0	0	0	2
PDB_01236	ykoK links to Rfam database...	0.54	0.41	0.71	22	11597	10	0	9	1	32
RFA_00389	Hammerhead_3 links to Rfam database...	0.93	0.87	1.00	13	1418	1	0	0	1	2
RFA_00390	Hammerhead_3 links to Rfam database...	0.93	0.87	1.00	13	1418	1	0	0	1	2
RFA_00391	Hammerhead_3 links to Rfam database...	0.89	0.80	1.00	12	1419	1	0	0	1	3
RFA_00396	Hammerhead_3 links to Rfam database...	0.93	0.87	1.00	13	1418	1	0	0	1	2
RFA_00402	Hammerhead_3 links to Rfam database...	0.93	0.87	1.00	13	1418	0	0	0	0	2
RFA_00409	Hammerhead_3 links to Rfam database...	0.89	0.80	1.00	12	1419	1	0	0	1	3
RFA_00416	Hammerhead_3 links to Rfam database...	0.93	0.87	1.00	13	1472	1	0	0	1	2
RFA_00433	Hammerhead_3 links to Rfam database...	0.93	0.87	1.00	13	1418	1	0	0	1	2
RFA_00434	Hammerhead_3 links to Rfam database...	0.93	0.87	1.00	13	1418	1	0	0	1	2
RFA_00436	Hammerhead_3 links to Rfam database...	0.93	0.87	1.00	13	1418	1	0	0	1	2
RFA_00440	Hammerhead_3 links to Rfam database...	0.93	0.87	1.00	13	1472	1	0	0	1	2
RFA_00442	Hammerhead_3 links to Rfam database...	0.93	0.87	1.00	13	1418	1	0	0	1	2
RFA_00444	Hammerhead_3 links to Rfam database...	0.82	0.67	1.00	10	1530	0	0	0	0	5
RFA_00583	Y_RNA links to Rfam database...	0.48	0.47	0.50	7	4936	18	0	7	11	8
RFA_00584	Y_RNA links to Rfam database...	0.97	0.93	1.00	14	2912	9	0	0	9	1
RFA_00585	Y_RNA links to Rfam database...	0.97	0.93	1.00	14	4837	11	0	0	11	1
RFA_00586	Y_RNA links to Rfam database...	0.63	0.40	1.00	6	3910	7	0	0	7	9
RFA_00587	Y_RNA links to Rfam database...	0.97	0.93	1.00	14	4837	10	0	0	10	1
RFA_00588	Y_RNA links to Rfam database...	0.00	0.00	0.00	0	4555	10	0	5	5	15
RFA_00589	Y_RNA links to Rfam database...	0.97	0.93	1.00	14	4357	11	0	0	11	1
RFA_00594	Y_RNA links to Rfam database...	0.93	0.87	1.00	13	2762	8	0	0	8	2
RFA_00596	Y_RNA links to Rfam database...	0.86	0.73	1.00	11	5984	16	0	0	16	4
RFA_00599	Telomerase-vert links to Rfam database...	0.06	0.04	0.10	4	101435	37	2	34	1	107
RFA_00601	Telomerase-vert links to Rfam database...	0.20	0.13	0.32	15	99188	37	2	30	5	99
RFA_00602	Telomerase-vert links to Rfam database...	0.15	0.09	0.26	10	101437	34	0	28	6	106
RFA_00658	Hammerhead_1 links to Rfam database...	0.40	0.29	0.57	4	1121	4	0	3	1	10
RFA_00664	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	985	5	0	5	0	14
RFA_00667	Hammerhead_1 links to Rfam database...	0.40	0.29	0.57	4	983	4	0	3	1	10
RFA_00668	Hammerhead_1 links to Rfam database...	0.35	0.21	0.60	3	985	3	0	2	1	11
RFA_00672	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	898	5	0	5	0	13
RFA_00673	Hammerhead_1 links to Rfam database...	0.23	0.14	0.40	2	1123	4	0	3	1	12
RFA_00674	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	1123	5	0	5	0	14
RFA_00675	Hammerhead_1 links to Rfam database...	0.35	0.21	0.60	3	985	3	0	2	1	11
RFA_00677	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	985	5	0	5	0	14
RFA_00678	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	942	4	0	4	0	14
RFA_00680	Hammerhead_1 links to Rfam database...	0.40	0.29	0.57	4	1121	4	0	3	1	10
RFA_00704	Hammerhead_1 links to Rfam database...	0.32	0.21	0.50	3	984	4	0	3	1	11
RFA_00707	Hammerhead_1 links to Rfam database...	0.43	0.29	0.67	4	1029	3	0	2	1	10
RFA_00715	Hammerhead_1 links to Rfam database...	0.30	0.14	0.67	2	943	2	0	1	1	12
RFA_00717	Hammerhead_1 links to Rfam database...	0.46	0.21	1.00	3	900	0	0	0	0	11
RFA_00730	s2m links to Rfam database...	0.91	0.83	1.00	10	893	0	0	0	0	2
RFA_00731	s2m links to Rfam database...	0.91	0.83	1.00	10	893	0	0	0	0	2
RFA_00733	s2m links to Rfam database...	0.81	0.67	1.00	8	895	0	0	0	0	4
RFA_00734	s2m links to Rfam database...	0.81	0.67	1.00	8	895	0	0	0	0	4
RFA_00736	s2m links to Rfam database...	0.91	0.83	1.00	10	893	0	0	0	0	2
RFA_00737	s2m links to Rfam database...	0.81	0.67	1.00	8	895	0	0	0	0	4
RFA_00745	s2m links to Rfam database...	0.91	0.83	1.00	10	936	0	0	0	0	2
RFA_00749	s2m links to Rfam database...	0.91	0.83	1.00	10	893	0	0	0	0	2
RFA_00758	s2m links to Rfam database...	0.86	0.75	1.00	9	894	0	0	0	0	3
RFA_00762	s2m links to Rfam database...	0.91	0.83	1.00	10	893	0	0	0	0	2
RFA_00763	s2m links to Rfam database...	0.91	0.83	1.00	10	893	0	0	0	0	2
RFA_00764	s2m links to Rfam database...	0.81	0.67	1.00	8	895	0	0	0	0	4
RFA_00765	s2m links to Rfam database...	0.91	0.83	1.00	10	893	0	0	0	0	2
RFA_00786	Gammaretro_CES links to Rfam database...	0.95	0.91	1.00	29	5021	0	0	0	0	3
RFA_00791	Gammaretro_CES links to Rfam database...	0.92	0.88	0.97	28	5122	1	0	1	0	4
RFA_00792	Gammaretro_CES links to Rfam database...	0.97	0.94	1.00	30	5020	0	0	0	0	2
RFA_00801	Gammaretro_CES links to Rfam database...	0.95	0.91	1.00	29	5021	0	0	0	0	3
SPR_00007	tRNA links to Rfam database...	0.74	0.67	0.82	14	2833	3	0	3	0	7
SPR_00009	tRNA links to Rfam database...	0.76	0.70	0.82	14	2833	3	0	3	0	6
SPR_00010	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00012	tRNA links to Rfam database...	0.76	0.70	0.82	14	2833	3	0	3	0	6
SPR_00013	tRNA links to Rfam database...	0.97	0.95	1.00	19	2831	0	0	0	0	1
SPR_00016	tRNA links to Rfam database...	0.79	0.67	0.93	14	2835	1	0	1	0	7
SPR_00017	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00025	tRNA links to Rfam database...	0.58	0.45	0.75	9	2914	3	0	3	0	11
SPR_00026	tRNA links to Rfam database...	0.98	0.95	1.00	20	2906	0	0	0	0	1
SPR_00027	tRNA links to Rfam database...	0.93	0.86	1.00	18	2908	0	0	0	0	3
SPR_00036	tRNA links to Rfam database...	0.87	0.75	1.00	15	2760	0	0	0	0	5
SPR_00045	tRNA links to Rfam database...	0.75	0.68	0.83	15	2832	3	0	3	0	7
SPR_00064	tRNA links to Rfam database...	0.82	0.67	1.00	14	2836	0	0	0	0	7
SPR_00065	tRNA links to Rfam database...	0.65	0.43	1.00	9	2841	0	0	0	0	12
SPR_00066	tRNA links to Rfam database...	0.95	0.90	1.00	19	2831	0	0	0	0	2
SPR_00068	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00070	tRNA links to Rfam database...	0.76	0.67	0.88	14	2834	2	0	2	0	7
SPR_00074	tRNA links to Rfam database...	0.97	0.95	1.00	19	2831	0	0	0	0	1
SPR_00079	tRNA links to Rfam database...	0.83	0.68	1.00	13	2472	0	0	0	0	6
SPR_00086	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00087	tRNA links to Rfam database...	0.95	0.90	1.00	18	2832	0	0	0	0	2
SPR_00088	tRNA links to Rfam database...	0.97	0.95	1.00	19	2831	0	0	0	0	1
SPR_00089	tRNA links to Rfam database...	0.84	0.70	1.00	14	2836	0	0	0	0	6
SPR_00090	tRNA links to Rfam database...	0.97	0.95	1.00	19	2831	0	0	0	0	1
SPR_00091	tRNA links to Rfam database...	0.92	0.85	1.00	17	2833	0	0	0	0	3
SPR_00095	tRNA links to Rfam database...	0.95	0.90	1.00	19	2831	0	0	0	0	2
SPR_00111	tRNA links to Rfam database...	0.95	0.90	1.00	19	2682	0	0	0	0	2
SPR_00112	tRNA links to Rfam database...	0.95	0.90	1.00	19	2682	1	0	0	1	2
SPR_00115	tRNA links to Rfam database...	0.98	0.95	1.00	20	2681	0	0	0	0	1
SPR_00117	tRNA links to Rfam database...	0.95	0.90	1.00	19	2831	1	0	0	1	2
SPR_00139	tRNA links to Rfam database...	0.98	0.95	1.00	20	2906	0	0	0	0	1
SPR_00153	tRNA links to Rfam database...	0.80	0.76	0.84	16	2907	3	0	3	0	5
SPR_00155	tRNA links to Rfam database...	0.79	0.71	0.88	15	2909	2	0	2	0	6
SPR_00156	tRNA links to Rfam database...	0.98	0.95	1.00	20	2906	0	0	0	0	1
SPR_00176	tRNA links to Rfam database...	0.97	0.95	1.00	19	2831	0	0	0	0	1
SPR_00177	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00178	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00191	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00200	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00224	tRNA links to Rfam database...	0.92	0.85	1.00	17	3724	4	0	0	4	3
SPR_00271	tRNA links to Rfam database...	0.93	0.86	1.00	18	2832	0	0	0	0	3
SPR_00273	tRNA links to Rfam database...	0.74	0.67	0.82	14	2833	3	0	3	0	7
SPR_00276	tRNA links to Rfam database...	0.98	0.95	1.00	20	2906	0	0	0	0	1
SPR_00277	tRNA links to Rfam database...	0.98	0.95	1.00	20	2906	0	0	0	0	1
SPR_00294	tRNA links to Rfam database...	0.95	0.90	1.00	19	2831	0	0	0	0	2
SPR_00295	tRNA links to Rfam database...	0.95	0.90	1.00	19	2756	0	0	0	0	2
SPR_00314	tRNA links to Rfam database...	0.98	0.95	1.00	20	2906	0	0	0	0	1
SPR_00315	tRNA links to Rfam database...	0.98	0.95	1.00	20	2906	0	0	0	0	1
SPR_00317	tRNA links to Rfam database...	0.90	0.85	0.94	17	2908	1	0	1	0	3
SPR_00318	tRNA links to Rfam database...	0.98	0.95	1.00	20	2906	1	0	0	1	1
SPR_00321	tRNA links to Rfam database...	0.90	0.86	0.95	18	2984	1	0	1	0	3
SPR_00333	tRNA links to Rfam database...	0.58	0.52	0.65	11	2758	6	0	6	0	10
SPR_00352	tRNA links to Rfam database...	0.95	0.90	1.00	19	2907	0	0	0	0	2
SPR_00353	tRNA links to Rfam database...	0.82	0.67	1.00	14	2836	0	0	0	0	7
SPR_00357	tRNA links to Rfam database...	0.95	0.90	1.00	19	2907	0	0	0	0	2
SPR_00358	tRNA links to Rfam database...	0.95	0.90	1.00	18	2908	0	0	0	0	2
SPR_00370	tRNA links to Rfam database...	0.82	0.67	1.00	14	2761	0	0	0	0	7
SPR_00386	tRNA links to Rfam database...	0.67	0.45	1.00	9	4177	4	0	0	4	11
SPR_00414	tRNA links to Rfam database...	0.82	0.67	1.00	14	3556	4	0	0	4	7
SPR_00415	tRNA links to Rfam database...	0.64	0.52	0.79	11	3556	7	0	3	4	10
SPR_00417	tRNA links to Rfam database...	0.60	0.50	0.73	11	3555	8	2	2	4	11
SPR_00418	tRNA links to Rfam database...	0.80	0.64	1.00	14	3556	4	0	0	4	8
SPR_00434	tRNA links to Rfam database...	0.90	0.81	1.00	17	2833	0	0	0	0	4
SPR_00435	tRNA links to Rfam database...	0.74	0.67	0.82	14	2833	3	0	3	0	7
SPR_00436	tRNA links to Rfam database...	0.93	0.86	1.00	18	2832	1	0	0	1	3
SPR_00437	tRNA links to Rfam database...	0.73	0.62	0.87	13	2760	3	0	2	1	8
SPR_00438	tRNA links to Rfam database...	0.82	0.67	1.00	14	2761	0	0	0	0	7
SPR_00452	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00455	tRNA links to Rfam database...	0.74	0.67	0.82	14	2833	3	0	3	0	7
SPR_00456	tRNA links to Rfam database...	0.93	0.86	1.00	18	2832	0	0	0	0	3
SPR_00476	tRNA links to Rfam database...	0.56	0.43	0.75	9	2763	3	1	2	0	12
SPR_00479	tRNA links to Rfam database...	0.93	0.86	1.00	18	2832	0	0	0	0	3
SPR_00482	tRNA links to Rfam database...	0.95	0.90	1.00	19	2682	0	0	0	0	2
SPR_00483	tRNA links to Rfam database...	0.95	0.90	1.00	19	2831	0	0	0	0	2
SPR_00487	tRNA links to Rfam database...	0.64	0.41	1.00	9	2692	0	0	0	0	13
SPR_00493	tRNA links to Rfam database...	0.77	0.59	1.00	13	2762	0	0	0	0	9
SPR_00496	tRNA links to Rfam database...	0.82	0.67	1.00	14	2761	0	0	0	0	7
SPR_00497	tRNA links to Rfam database...	0.82	0.67	1.00	14	2761	0	0	0	0	7
SPR_00502	tRNA links to Rfam database...	0.93	0.86	1.00	18	2908	0	0	0	0	3
SPR_00504	tRNA links to Rfam database...	0.95	0.90	1.00	18	2832	0	0	0	0	2
SPR_00505	tRNA links to Rfam database...	0.92	0.85	1.00	17	2909	0	0	0	0	3
SPR_00506	tRNA links to Rfam database...	0.97	0.95	1.00	19	2907	0	0	0	0	1
SPR_00509	tRNA links to Rfam database...	0.92	0.85	1.00	17	2909	0	0	0	0	3
SPR_00512	tRNA links to Rfam database...	0.78	0.70	0.88	14	2910	2	0	2	0	6
SPR_00513	tRNA links to Rfam database...	0.95	0.90	1.00	18	2908	0	0	0	0	2
SPR_00518	tRNA links to Rfam database...	0.92	0.85	1.00	17	2909	0	0	0	0	3
SPR_00548	tRNA links to Rfam database...	0.82	0.67	1.00	14	3389	0	0	0	0	7
SPR_00557	tRNA links to Rfam database...	0.95	0.90	1.00	19	2831	0	0	0	0	2
SPR_00561	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00590	tRNA links to Rfam database...	0.60	0.50	0.71	10	2989	5	0	4	1	10
SPR_00593	tRNA links to Rfam database...	0.56	0.32	1.00	6	2769	0	0	0	0	13
SPR_00595	tRNA links to Rfam database...	0.98	0.95	1.00	20	2755	0	0	0	0	1
SPR_00598	tRNA links to Rfam database...	0.79	0.62	1.00	13	2990	1	0	0	1	8
SPR_00610	tRNA links to Rfam database...	0.87	0.76	1.00	16	2540	0	0	0	0	5
SPR_00620	tRNA links to Rfam database...	0.69	0.48	1.00	10	2993	1	0	0	1	11
SPR_00721	tRNA links to Rfam database...	0.90	0.81	1.00	17	2909	0	0	0	0	4
SPR_00722	tRNA links to Rfam database...	0.95	0.90	1.00	18	2908	0	0	0	0	2
SPR_00758	tRNA links to Rfam database...	0.95	0.90	1.00	19	2984	0	0	0	0	2
SPR_00760	tRNA links to Rfam database...	0.98	0.95	1.00	20	3550	0	0	0	0	1
SPR_00777	tRNA links to Rfam database...	0.95	0.90	1.00	18	2610	1	0	0	1	2
SPR_00867	tRNA links to Rfam database...	0.98	0.95	1.00	20	2906	0	0	0	0	1
SPR_00868	tRNA links to Rfam database...	0.95	0.90	1.00	19	2907	0	0	0	0	2
SPR_00943	tRNA links to Rfam database...	0.60	0.50	0.71	10	2542	4	0	4	0	10
SPR_00957	tRNA links to Rfam database...	0.98	0.95	1.00	20	2983	0	0	0	0	1
SPR_01040	tRNA links to Rfam database...	0.93	0.86	1.00	18	2757	0	0	0	0	3
SPR_01088	tRNA links to Rfam database...	0.93	0.86	1.00	18	2908	0	0	0	0	3
SPR_01095	tRNA links to Rfam database...	0.95	0.90	1.00	19	2831	0	0	0	0	2
SPR_01106	tRNA links to Rfam database...	0.82	0.67	1.00	14	2542	0	0	0	0	7
SPR_01117	tRNA links to Rfam database...	0.90	0.81	1.00	17	2986	0	0	0	0	4
SPR_01157	tRNA links to Rfam database...	0.80	0.76	0.84	16	2756	4	0	3	1	5
SRP_00006	Metazoa_SRP links to Rfam database...	0.43	0.29	0.64	29	45708	16	0	16	0	72
SRP_00008	Bacteria_small_SRP links to Rfam database...	0.65	0.52	0.81	13	2910	3	0	3	0	12
SRP_00011	Plant_SRP links to Rfam database...	0.65	0.48	0.88	50	46303	7	0	7	0	54
SRP_00015	Plant_SRP links to Rfam database...	0.53	0.36	0.78	36	46314	10	0	10	0	63
SRP_00020	Bacteria_small_SRP links to Rfam database...	0.78	0.61	1.00	20	5545	0	0	0	0	13
SRP_00024	Bacteria_large_SRP links to Rfam database...	0.55	0.34	0.88	30	37641	4	0	4	0	57
SRP_00026	Bacteria_large_SRP links to Rfam database...	0.43	0.26	0.72	23	36824	9	1	8	0	65
SRP_00027	Bacteria_large_SRP links to Rfam database...	0.48	0.24	0.95	21	37106	1	0	1	0	66
SRP_00030	Bacteria_large_SRP links to Rfam database...	0.11	0.03	0.33	3	36847	6	0	6	0	85
SRP_00031	Bacteria_large_SRP links to Rfam database...	0.39	0.24	0.64	21	36282	12	1	11	0	68
SRP_00037	Bacteria_large_SRP links to Rfam database...	0.26	0.07	1.00	6	36579	0	0	0	0	81
SRP_00038	Bacteria_small_SRP links to Rfam database...	0.22	0.21	0.24	7	5021	22	0	22	0	26
SRP_00042	Bacteria_small_SRP links to Rfam database...	0.41	0.36	0.47	9	3986	11	3	7	1	16
SRP_00044	Bacteria_small_SRP links to Rfam database...	0.86	0.84	0.87	27	6074	5	1	3	1	5
SRP_00046	Bacteria_small_SRP links to Rfam database...	0.47	0.22	1.00	7	4746	0	0	0	0	25
SRP_00050	Metazoa_SRP links to Rfam database...	0.40	0.25	0.64	25	44811	14	2	12	0	74
SRP_00051	Bacteria_small_SRP links to Rfam database...	0.25	0.23	0.27	7	5434	19	1	18	0	23
SRP_00054	Bacteria_small_SRP links to Rfam database...	0.34	0.22	0.54	7	5552	6	0	6	0	25
SRP_00058	Bacteria_small_SRP links to Rfam database...	0.66	0.44	1.00	15	5763	0	0	0	0	19
SRP_00066	Metazoa_SRP links to Rfam database...	0.65	0.45	0.94	45	45403	3	0	3	0	55
SRP_00072	Bacteria_small_SRP links to Rfam database...	0.49	0.24	1.00	7	6321	0	0	0	0	22
SRP_00074	Bacteria_small_SRP links to Rfam database...	0.49	0.24	1.00	7	6548	0	0	0	0	22
SRP_00075	Bacteria_small_SRP links to Rfam database...	0.45	0.21	1.00	7	5558	0	0	0	0	27
SRP_00077	Bacteria_small_SRP links to Rfam database...	0.25	0.08	0.75	3	6666	1	0	1	0	34
SRP_00081	Bacteria_small_SRP links to Rfam database...	0.47	0.23	1.00	7	5558	0	0	0	0	24
SRP_00084	Bacteria_small_SRP links to Rfam database...	0.81	0.74	0.89	25	5432	3	1	2	0	9
SRP_00086	Metazoa_SRP links to Rfam database...	0.68	0.46	1.00	46	44207	0	0	0	0	54
SRP_00088	Bacteria_large_SRP links to Rfam database...	0.29	0.19	0.44	17	34152	22	2	20	0	72
SRP_00089	Bacteria_large_SRP links to Rfam database...	0.45	0.21	0.95	19	35758	1	0	1	0	71
SRP_00090	Bacteria_large_SRP links to Rfam database...	0.46	0.22	0.95	20	35490	1	0	1	0	70
SRP_00094	Bacteria_small_SRP links to Rfam database...	0.46	0.38	0.56	9	4079	7	2	5	0	15
SRP_00095	Bacteria_small_SRP links to Rfam database...	0.14	0.12	0.18	3	3988	14	1	13	0	22
SRP_00098	Bacteria_small_SRP links to Rfam database...	0.62	0.49	0.78	18	6418	5	1	4	0	19
SRP_00102	Metazoa_SRP links to Rfam database...	0.23	0.16	0.35	16	44505	30	3	27	0	85
SRP_00103	Metazoa_SRP links to Rfam database...	0.31	0.23	0.42	23	45396	32	0	32	0	79
SRP_00105	Bacteria_small_SRP links to Rfam database...	0.45	0.21	1.00	7	5558	0	0	0	0	27
SRP_00107	Bacteria_small_SRP links to Rfam database...	0.72	0.53	1.00	10	3645	0	0	0	0	9
SRP_00121	Bacteria_small_SRP links to Rfam database...	0.53	0.28	1.00	7	4271	0	0	0	0	18
SRP_00128	Bacteria_small_SRP links to Rfam database...	0.77	0.64	0.92	23	6761	2	1	1	0	13
SRP_00132	Bacteria_small_SRP links to Rfam database...	0.49	0.24	1.00	7	4844	0	0	0	0	22
SRP_00134	Bacteria_large_SRP links to Rfam database...	0.68	0.55	0.84	16	5976	3	0	3	0	13
SRP_00141	Bacteria_small_SRP links to Rfam database...	0.74	0.61	0.89	25	6300	3	1	2	0	16
SRP_00152	Plant_SRP links to Rfam database...	0.46	0.38	0.57	39	45684	30	6	24	0	64
SRP_00161	Bacteria_small_SRP links to Rfam database...	0.56	0.32	1.00	7	2843	0	0	0	0	15
SRP_00162	Bacteria_small_SRP links to Rfam database...	0.55	0.30	1.00	7	2919	0	0	0	0	16
SRP_00163	Bacteria_small_SRP links to Rfam database...	0.66	0.54	0.82	14	3469	3	0	3	0	12
SRP_00164	Bacteria_small_SRP links to Rfam database...	0.53	0.40	0.70	14	6883	6	1	5	0	21
SRP_00170	Bacteria_small_SRP links to Rfam database...	0.48	0.40	0.59	10	4078	7	1	6	0	15
SRP_00171	Metazoa_SRP links to Rfam database...	0.47	0.34	0.65	30	45405	16	0	16	0	58
SRP_00173	Bacteria_large_SRP links to Rfam database...	0.49	0.27	0.89	24	38199	3	0	3	0	66
SRP_00174	Bacteria_large_SRP links to Rfam database...	0.44	0.23	0.83	20	38757	4	0	4	0	66
SRP_00178	Plant_SRP links to Rfam database...	0.55	0.40	0.75	41	45698	14	4	10	0	61
SRP_00179	Plant_SRP links to Rfam database...	0.59	0.42	0.85	44	46004	8	1	7	0	61
SRP_00181	Plant_SRP links to Rfam database...	0.80	0.67	0.96	68	45985	5	0	3	2	34
SRP_00182	Plant_SRP links to Rfam database...	0.52	0.38	0.73	38	46004	14	0	14	0	63
SRP_00184	Plant_SRP links to Rfam database...	0.38	0.25	0.58	25	46013	18	0	18	0	75
SRP_00188	Plant_SRP links to Rfam database...	0.52	0.42	0.65	33	31074	18	3	15	0	46
SRP_00194	Bacteria_small_SRP links to Rfam database...	0.53	0.29	1.00	6	3234	0	0	0	0	15
SRP_00200	Bacteria_small_SRP links to Rfam database...	0.27	0.11	0.67	4	6897	2	0	2	0	32
SRP_00209	Bacteria_small_SRP links to Rfam database...	0.32	0.22	0.46	6	4643	7	1	6	0	21
SRP_00213	Bacteria_small_SRP links to Rfam database...	0.46	0.36	0.60	9	4171	6	1	5	0	16
SRP_00215	Bacteria_small_SRP links to Rfam database...	0.53	0.28	1.00	7	3233	0	0	0	0	18
SRP_00227	Bacteria_small_SRP links to Rfam database...	0.88	0.87	0.90	27	5121	3	1	2	0	4
SRP_00228	Metazoa_SRP links to Rfam database...	0.67	0.48	0.92	46	45401	4	1	3	0	49
SRP_00231	Bacteria_small_SRP links to Rfam database...	0.45	0.21	1.00	7	5453	0	0	0	0	27
SRP_00233	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	5140	11	1	10	0	33
SRP_00234	Bacteria_large_SRP links to Rfam database...	0.19	0.03	1.00	3	36312	0	0	0	0	83
SRP_00250	Bacteria_small_SRP links to Rfam database...	0.78	0.61	1.00	22	6764	0	0	0	0	14
SRP_00251	Bacteria_small_SRP links to Rfam database...	0.73	0.56	0.95	20	7000	1	0	1	0	16
SRP_00266	Bacteria_small_SRP links to Rfam database...	0.63	0.59	0.68	17	4631	9	1	7	1	12
SRP_00268	Bacteria_small_SRP links to Rfam database...	0.54	0.44	0.67	12	4168	6	1	5	0	15
SRP_00269	Bacteria_small_SRP links to Rfam database...	0.76	0.58	1.00	19	5031	0	0	0	0	14
SRP_00270	Bacteria_small_SRP links to Rfam database...	0.44	0.19	1.00	6	4650	0	0	0	0	25
SRP_00271	Bacteria_small_SRP links to Rfam database...	0.27	0.13	0.60	3	3235	2	0	2	0	21
SRP_00273	Bacteria_small_SRP links to Rfam database...	0.71	0.58	0.88	23	6760	3	1	2	0	17
SRP_00274	Bacteria_small_SRP links to Rfam database...	0.75	0.63	0.89	24	6876	3	1	2	0	14
SRP_00295	Bacteria_small_SRP links to Rfam database...	0.51	0.26	1.00	10	6893	0	0	0	0	28
SRP_00303	Bacteria_small_SRP links to Rfam database...	0.69	0.56	0.86	18	6649	3	0	3	0	14
SRP_00308	Bacteria_large_SRP links to Rfam database...	0.41	0.26	0.66	23	36280	12	1	11	0	65
SRP_00310	Bacteria_small_SRP links to Rfam database...	0.84	0.83	0.86	19	2904	3	0	3	0	4
SRP_00312	Bacteria_small_SRP links to Rfam database...	0.51	0.41	0.65	11	4169	6	1	5	0	16
SRP_00315	Bacteria_small_SRP links to Rfam database...	0.84	0.83	0.86	19	2904	3	0	3	0	4
SRP_00317	Metazoa_SRP links to Rfam database...	0.63	0.43	0.93	42	45105	3	0	3	0	56
SRP_00318	Bacteria_small_SRP links to Rfam database...	0.84	0.83	0.86	19	2981	3	0	3	0	4
SRP_00325	Bacteria_small_SRP links to Rfam database...	0.87	0.76	1.00	25	4346	0	0	0	0	8
SRP_00326	Bacteria_small_SRP links to Rfam database...	0.40	0.16	1.00	5	5045	0	0	0	0	26
SRP_00333	Bacteria_small_SRP links to Rfam database...	0.38	0.15	1.00	5	5146	0	0	0	0	29
SRP_00335	Bacteria_large_SRP links to Rfam database...	0.52	0.44	0.63	17	35218	15	4	6	5	22
SRP_00337	Bacteria_large_SRP links to Rfam database...	0.44	0.30	0.66	27	35470	15	3	11	1	64
SRP_00338	Bacteria_small_SRP links to Rfam database...	0.93	0.89	0.97	32	5427	1	0	1	0	4
SRP_00341	Bacteria_small_SRP links to Rfam database...	0.47	0.23	1.00	7	4746	0	0	0	0	24
SRP_00342	Bacteria_small_SRP links to Rfam database...	0.49	0.24	1.00	6	3999	0	0	0	0	19
SRP_00347	Metazoa_SRP links to Rfam database...	0.32	0.21	0.49	20	46624	21	3	18	0	76
SRP_00350	Bacteria_small_SRP links to Rfam database...	0.55	0.37	0.83	10	3904	2	1	1	0	17
SRP_00357	Bacteria_small_SRP links to Rfam database...	0.83	0.75	0.93	27	5327	2	1	1	0	9
SRP_00358	Bacteria_small_SRP links to Rfam database...	0.53	0.29	1.00	10	6318	0	0	0	0	25
SRP_00367	Bacteria_small_SRP links to Rfam database...	0.13	0.09	0.21	3	6772	11	0	11	0	32
SRP_00368	Metazoa_SRP links to Rfam database...	0.26	0.17	0.40	17	43913	26	3	23	0	81
SRP_00369	Bacteria_small_SRP links to Rfam database...	0.77	0.69	0.86	24	5750	5	1	3	1	11
SRP_00383	Bacteria_small_SRP links to Rfam database...	0.43	0.29	0.64	7	3229	4	0	4	0	17
TMR_00017	tmRNA links to Rfam database...	0.44	0.23	0.85	23	67134	8	0	4	4	79
TMR_00018	tmRNA links to Rfam database...	0.29	0.13	0.67	12	64602	10	0	6	4	80
TMR_00038	tmRNA links to Rfam database...	0.49	0.25	0.93	28	71223	4	1	1	2	82
TMR_00042	tmRNA links to Rfam database...	0.22	0.12	0.40	12	62805	21	0	18	3	86
TMR_00046	tmRNA links to Rfam database...	0.31	0.22	0.44	21	62787	30	4	23	3	75
TMR_00048	tmRNA links to Rfam database...	0.28	0.20	0.40	19	64933	33	5	23	5	76
TMR_00080	tmRNA links to Rfam database...	0.47	0.29	0.76	28	70463	9	0	9	0	68
TMR_00082	tmRNA links to Rfam database...	0.44	0.30	0.63	29	67850	21	1	16	4	67
TMR_00123	tmRNA links to Rfam database...	0.41	0.22	0.76	22	66401	12	0	7	5	79
TMR_00137	tmRNA links to Rfam database...	0.33	0.20	0.55	18	61042	21	2	13	6	71
TMR_00142	tmRNA links to Rfam database...	0.12	0.07	0.21	7	70843	33	8	18	7	95
TMR_00207	tmRNA links to Rfam database...	0.32	0.18	0.54	19	72355	16	6	10	0	84
TMR_00257	tmRNA links to Rfam database...	0.46	0.29	0.76	28	67124	14	0	9	5	70
TMR_00271	tmRNA links to Rfam database...	0.28	0.14	0.57	13	64238	15	1	9	5	78
TMR_00332	tmRNA links to Rfam database...	0.40	0.22	0.71	22	67130	14	0	9	5	77
TMR_00366	tmRNA links to Rfam database...	0.32	0.17	0.59	17	67867	23	3	9	11	83
TMR_00378	tmRNA links to Rfam database...	0.32	0.18	0.59	17	67867	23	3	9	11	80
TMR_00399	tmRNA links to Rfam database...	0.18	0.09	0.36	8	64958	14	7	7	0	86
TMR_00404	tmRNA links to Rfam database...	0.21	0.11	0.42	10	67504	25	4	10	11	82
TMR_00427	tmRNA links to Rfam database...	0.55	0.32	0.94	31	67495	7	0	2	5	66
TMR_00443	tmRNA links to Rfam database...	0.41	0.27	0.64	28	67117	20	1	15	4	76
TMR_00451	tmRNA links to Rfam database...	0.17	0.11	0.25	10	63506	34	6	24	4	79
TMR_00458	tmRNA links to Rfam database...	0.18	0.09	0.38	8	63525	16	1	12	3	85
TMR_00469	tmRNA links to Rfam database...	0.50	0.31	0.79	31	64581	12	1	7	4	69
TMR_00472	tmRNA links to Rfam database...	0.50	0.30	0.83	29	64585	10	1	5	4	68
TMR_00519	tmRNA links to Rfam database...	0.28	0.18	0.44	17	63151	27	2	20	5	78
TMR_00520	tmRNA links to Rfam database...	0.34	0.19	0.59	19	63158	13	4	9	0	80
TMR_00522	tmRNA links to Rfam database...	0.38	0.20	0.73	19	63164	7	1	6	0	78
TMR_00528	tmRNA links to Rfam database...	0.40	0.23	0.71	22	63159	13	2	7	4	75
TMR_00540	tmRNA links to Rfam database...	0.30	0.18	0.50	19	73498	24	2	17	5	85
TMR_00568	tmRNA links to Rfam database...	0.33	0.17	0.65	17	60700	14	0	9	5	82
TMR_00571	tmRNA links to Rfam database...	0.37	0.19	0.70	19	60699	13	0	8	5	80
TMR_00580	tmRNA links to Rfam database...	0.35	0.19	0.66	19	60697	15	2	8	5	81
TMR_00584	tmRNA links to Rfam database...	0.31	0.15	0.63	15	61051	15	1	8	6	82
TMR_00586	tmRNA links to Rfam database...	0.36	0.20	0.68	19	61047	14	1	8	5	78
TMR_00616	tmRNA links to Rfam database...	0.46	0.28	0.76	28	67124	12	3	6	3	71
TMR_00699	tmRNA links to Rfam database...	0.32	0.17	0.61	17	67133	12	3	8	1	85
TMR_00702	tmRNA links to Rfam database...	0.42	0.24	0.73	24	67128	10	3	6	1	76
TMR_00703	tmRNA links to Rfam database...	0.52	0.35	0.78	35	67483	15	1	9	5	64

^top

Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.

Table of contents:

Overview

Performance plots

Performance of ProbKnot - scored higher in this pairwise comparison

1. Total counts & total scores for ProbKnot

2. Individual counts for ProbKnot [ download as .csv ]

Performance of CMfinder(20) - scored lower in this pairwise comparison

1. Total counts & total scores for CMfinder(20)

2. Individual counts for CMfinder(20) [ download as .csv ]