CompaRNA - on-line benchmarks of RNA structure prediction methods

Laboratory of Structural Bioinformatics @ Adam Mickiewicz University in Poznan

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Overview

Metric	ProbKnot		MCFold
MCC	0.639	>	0.473
Average MCC ± 95% Confidence Intervals	0.653 ± 0.023	>	0.524 ± 0.025
Sensitivity	0.628	>	0.524
Positive Predictive Value	0.656	>	0.435
Total TP	9754	>	8141
Total TN	2047750	>	2043904
Total FP	6119	<	13141
Total FP CONTRA	837	<	1682
Total FP INCONS	4277	<	8891
Total FP COMP	1005	<	2568
Total FN	5778	<	7391
P-value	3.56938820447e-08

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Performance plots

Comparison of performance of ProbKnot and MCFold. Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data (individual counts for ProbKnot and MCFold).
Average Matthews Correlation Coefficients (MCC) with 95% confidence intervals (CIs) were plotted for different RNA families, for which at least 3 members were present in the benchmarking dataset. 'n' denotes the number of MCCs used to calculate the average and CI. See tables below for raw data (individual counts for ProbKnot and MCFold).
Comparison of average Matthews Correlation Coefficients (MCCs) for ProbKnot and MCFold. The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data (individual counts for ProbKnot and MCFold).

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Performance of ProbKnot - scored higher in this pairwise comparison

1. Total counts & total scores for ProbKnot

Total Base Pair Counts
Total TP	9754
Total TN	2047750
Total FP	6119
Total FP CONTRA	837
Total FP INCONS	4277
Total FP COMP	1005
Total FN	5778

Total Scores
MCC	0.639
Average MCC ± 95% Confidence Intervals	0.653 ± 0.023
Sensitivity	0.628
Positive Predictive Value	0.656
Nr of predictions	761

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2. Individual counts for ProbKnot [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
CRW_00552	5S_rRNA links to Rfam database...	0.81	0.74	0.88	29	7107	6	1	3	2	10
CRW_00573	5S_rRNA links to Rfam database...	0.25	0.25	0.26	10	7101	29	1	28	0	30
CRW_01492	5S_rRNA links to Rfam database...	0.77	0.74	0.82	31	7588	10	0	7	3	11
CRW_01493	5S_rRNA links to Rfam database...	0.72	0.65	0.80	28	7840	13	0	7	6	15
CRW_01494	5S_rRNA links to Rfam database...	0.73	0.65	0.81	26	7108	7	0	6	1	14
CRW_01496	5S_rRNA links to Rfam database...	0.79	0.75	0.83	33	8088	14	0	7	7	11
CRW_01497	5S_rRNA links to Rfam database...	0.80	0.73	0.88	29	7107	6	0	4	2	11
CRW_01498	5S_rRNA links to Rfam database...	0.92	0.88	0.95	38	8088	4	0	2	2	5
CRW_01499	5S_rRNA links to Rfam database...	0.33	0.34	0.33	14	7959	30	2	26	2	27
CRW_01500	5S_rRNA links to Rfam database...	0.92	0.84	1.00	32	7718	1	0	0	1	6
CRW_01504	5S_rRNA links to Rfam database...	0.92	0.91	0.93	39	7833	6	0	3	3	4
CRW_01507	5S_rRNA links to Rfam database...	0.86	0.76	0.97	31	7471	4	0	1	3	10
CRW_01521	5S_rRNA links to Rfam database...	0.78	0.72	0.84	26	6872	10	0	5	5	10
CRW_01532	5S_rRNA links to Rfam database...	0.77	0.76	0.78	28	7104	10	0	8	2	9
CRW_01533	5S_rRNA links to Rfam database...	0.79	0.78	0.81	29	7104	10	0	7	3	8
CRW_01534	5S_rRNA links to Rfam database...	0.75	0.78	0.73	29	7100	12	3	8	1	8
CRW_01535	5S_rRNA links to Rfam database...	0.91	0.84	1.00	31	7109	2	0	0	2	6
CRW_01537	5S_rRNA links to Rfam database...	0.70	0.68	0.74	25	7106	11	1	8	2	12
CRW_01539	5S_rRNA links to Rfam database...	0.82	0.81	0.83	30	7104	9	0	6	3	7
CRW_01540	5S_rRNA links to Rfam database...	0.35	0.35	0.35	13	7103	24	2	22	0	24
CRW_01542	5S_rRNA links to Rfam database...	0.23	0.24	0.23	9	7101	30	3	27	0	28
CRW_01548	5S_rRNA links to Rfam database...	0.89	0.84	0.94	31	6988	4	0	2	2	6
CRW_01555	5S_rRNA links to Rfam database...	0.75	0.70	0.81	26	9013	8	0	6	2	11
CRW_01557	5S_rRNA links to Rfam database...	0.85	0.81	0.88	30	7106	6	0	4	2	7
CRW_01562	5S_rRNA links to Rfam database...	0.87	0.81	0.94	30	7108	2	0	2	0	7
CRW_01563	5S_rRNA links to Rfam database...	0.21	0.19	0.23	7	6873	25	2	21	2	30
CRW_01568	5S_rRNA links to Rfam database...	0.78	0.78	0.78	29	7103	9	0	8	1	8
CRW_01569	5S_rRNA links to Rfam database...	0.79	0.78	0.81	29	7104	9	0	7	2	8
CRW_01570	5S_rRNA links to Rfam database...	0.82	0.78	0.85	29	7106	8	0	5	3	8
CRW_01572	5S_rRNA links to Rfam database...	0.22	0.22	0.23	8	6986	27	6	21	0	29
CRW_01573	5S_rRNA links to Rfam database...	0.91	0.84	1.00	31	7229	4	0	0	4	6
CRW_01578	5S_rRNA links to Rfam database...	0.91	0.84	1.00	31	7109	4	0	0	4	6
CRW_01580	5S_rRNA links to Rfam database...	0.24	0.24	0.25	9	7104	27	5	22	0	28
CRW_01583	5S_rRNA links to Rfam database...	0.80	0.76	0.85	28	7107	6	0	5	1	9
CRW_01584	5S_rRNA links to Rfam database...	0.87	0.84	0.91	31	7106	7	0	3	4	6
CRW_01595	5S_rRNA links to Rfam database...	0.59	0.54	0.65	20	8484	13	0	11	2	17
CRW_01599	5S_rRNA links to Rfam database...	0.22	0.24	0.21	9	7097	34	5	29	0	28
CRW_01605	5S_rRNA links to Rfam database...	-0.01	0.00	0.00	0	7103	37	5	32	0	37
CRW_01606	5S_rRNA links to Rfam database...	0.55	0.51	0.59	19	7108	14	0	13	1	18
CRW_01613	5S_rRNA links to Rfam database...	0.74	0.76	0.72	28	6982	14	0	11	3	9
CRW_01616	5S_rRNA links to Rfam database...	0.82	0.78	0.85	29	7106	7	0	5	2	8
CRW_01620	5S_rRNA links to Rfam database...	0.86	0.86	0.86	32	6984	6	0	5	1	5
CRW_01623	5S_rRNA links to Rfam database...	0.90	0.86	0.94	32	7106	4	0	2	2	5
NDB_00014	-	0.89	0.80	1.00	8	182	0	0	0	0	2
NDB_00015	-	0.38	0.40	0.40	4	266	6	0	6	0	6
NDB_00016	-	0.91	0.83	1.00	10	266	0	0	0	0	2
NDB_00047	-	0.91	0.83	1.00	10	266	0	0	0	0	2
NDB_00048	-	-0.02	0.00	0.00	0	1514	26	0	26	0	28
NDB_00049	-	0.92	0.85	1.00	11	314	0	0	0	0	2
NDB_00051	tRNA links to Rfam database...	0.39	0.42	0.38	10	2749	16	3	13	0	14
PDB_00001	-	0.34	0.33	0.40	4	266	6	0	6	0	8
PDB_00002	-	1.00	1.00	1.00	8	202	0	0	0	0	0
PDB_00003	-	0.81	0.67	1.00	8	343	0	0	0	0	4
PDB_00004	-	0.79	0.63	1.00	12	808	0	0	0	0	7
PDB_00005	Tymo_tRNA-like links to Rfam database...	0.78	0.79	0.79	11	932	3	0	3	0	3
PDB_00006	-	1.00	1.00	1.00	14	689	0	0	0	0	0
PDB_00011	-	0.91	0.83	1.00	10	266	0	0	0	0	2
PDB_00012	mir-TAR links to Rfam database...	1.00	1.00	1.00	7	399	4	0	0	4	0
PDB_00013	-	1.00	1.00	1.00	10	396	1	0	0	1	0
PDB_00017	-	0.70	0.60	0.82	9	692	2	0	2	0	6
PDB_00018	-	0.20	0.20	0.22	4	1017	14	2	12	0	16
PDB_00019	-	0.45	0.50	0.44	4	244	5	0	5	0	4
PDB_00020	-	0.41	0.35	0.50	7	766	7	0	7	0	13
PDB_00021	-	1.00	1.00	1.00	8	182	0	0	0	0	0
PDB_00022	-	0.94	0.89	1.00	8	245	0	0	0	0	1
PDB_00032	-	0.89	0.80	1.00	12	891	1	0	0	1	3
PDB_00034	-	0.82	0.75	0.90	9	368	1	0	1	0	3
PDB_00035	-	0.94	0.89	1.00	8	202	0	0	0	0	1
PDB_00036	-	-0.01	0.00	0.00	0	3458	28	0	28	0	27
PDB_00039	-	-0.01	0.00	0.00	0	5316	40	0	40	0	45
PDB_00040	-	0.83	0.70	1.00	7	269	0	0	0	0	3
PDB_00041	-	0.70	0.50	1.00	6	624	0	0	0	0	6
PDB_00043	-	0.83	0.77	0.91	10	424	1	0	1	0	3
PDB_00048	-	1.00	1.00	1.00	9	291	1	0	0	1	0
PDB_00049	-	0.83	0.70	1.00	7	224	0	0	0	0	3
PDB_00053	-	1.00	1.00	1.00	11	424	0	0	0	0	0
PDB_00054	-	0.54	0.30	1.00	3	187	0	0	0	0	7
PDB_00056	-	0.93	0.88	1.00	14	616	0	0	0	0	2
PDB_00057	-	1.00	1.00	1.00	10	341	1	0	0	1	0
PDB_00065	-	0.77	0.60	1.00	6	400	1	0	0	1	4
PDB_00070	tRNA links to Rfam database...	0.65	0.67	0.64	16	2825	10	1	8	1	8
PDB_00074	-	-0.03	0.00	0.00	0	370	8	0	8	0	12
PDB_00081	-	0.94	0.89	1.00	8	182	0	0	0	0	1
PDB_00088	-	0.86	0.75	1.00	9	426	1	0	0	1	3
PDB_00096	-	0.82	0.75	0.90	9	315	1	0	1	0	3
PDB_00098	-	0.81	0.67	1.00	4	227	0	0	0	0	2
PDB_00102	-	0.93	0.88	1.00	7	224	0	0	0	0	1
PDB_00104	-	-0.02	0.00	0.00	0	618	12	0	12	0	16
PDB_00107	-	0.95	0.91	1.00	10	455	2	0	0	2	1
PDB_00108	-	1.00	1.00	1.00	7	203	0	0	0	0	0
PDB_00110	-	1.00	1.00	1.00	7	246	0	0	0	0	0
PDB_00113	-	0.94	0.89	1.00	8	223	0	0	0	0	1
PDB_00115	-	-0.03	0.00	0.00	0	547	14	0	14	0	16
PDB_00116	-	0.70	0.50	1.00	3	228	0	0	0	0	3
PDB_00119	-	0.95	0.90	1.00	9	244	0	0	0	0	1
PDB_00120	-	0.95	0.90	1.00	9	222	0	0	0	0	1
PDB_00121	-	0.95	0.90	1.00	9	222	0	0	0	0	1
PDB_00122	-	0.91	0.83	1.00	10	290	0	0	0	0	2
PDB_00123	-	-0.01	0.00	0.00	0	4151	35	0	35	0	36
PDB_00124	-	-0.02	0.00	0.00	0	488	8	2	6	0	10
PDB_00125	-	-0.03	0.00	0.00	0	225	6	0	6	0	10
PDB_00128	-	0.77	0.71	0.83	10	484	2	0	2	0	4
PDB_00130	-	1.00	1.00	1.00	6	270	0	0	0	0	0
PDB_00132	-	0.71	0.58	0.88	7	427	1	0	1	0	5
PDB_00134	-	0.79	0.63	1.00	5	373	0	0	0	0	3
PDB_00136	-	0.76	0.73	0.79	19	2391	6	0	5	1	7
PDB_00137	-	0.87	0.77	1.00	10	396	0	0	0	0	3
PDB_00138	-	0.72	0.63	0.83	5	372	1	0	1	0	3
PDB_00142	-	0.91	0.83	1.00	10	425	0	0	0	0	2
PDB_00149	-	0.89	0.80	1.00	12	691	0	0	0	0	3
PDB_00150	-	0.95	0.90	1.00	9	291	1	0	0	1	1
PDB_00152	-	0.93	0.88	1.00	7	183	0	0	0	0	1
PDB_00153	-	0.95	0.90	1.00	9	244	0	0	0	0	1
PDB_00155	-	0.86	0.75	1.00	6	319	0	0	0	0	2
PDB_00157	-	-0.01	0.00	0.00	0	3296	27	2	23	2	29
PDB_00158	-	0.74	0.60	0.92	12	848	1	0	1	0	8
PDB_00159	-	0.73	0.55	1.00	6	345	0	0	0	0	5
PDB_00160	-	0.89	0.89	0.89	8	267	2	0	1	1	1
PDB_00168	-	0.66	0.67	0.67	4	294	3	1	1	1	2
PDB_00169	-	0.83	0.70	1.00	7	224	0	0	0	0	3
PDB_00170	-	0.86	0.75	1.00	12	618	0	0	0	0	4
PDB_00171	-	0.70	0.50	1.00	6	429	0	0	0	0	6
PDB_00174	-	0.90	0.82	1.00	18	1017	0	0	0	0	4
PDB_00175	-	-0.01	0.00	0.00	0	4536	24	0	24	0	36
PDB_00178	-	0.90	0.82	1.00	9	519	1	0	0	1	2
PDB_00181	-	0.88	0.78	1.00	7	224	0	0	0	0	2
PDB_00182	-	0.88	0.78	1.00	7	246	0	0	0	0	2
PDB_00183	-	0.83	0.70	1.00	16	1469	0	0	0	0	7
PDB_00184	-	0.87	0.77	1.00	10	551	1	0	0	1	3
PDB_00185	-	0.61	0.61	0.63	17	2899	12	0	10	2	11
PDB_00190	-	0.95	0.90	1.00	9	222	0	0	0	0	1
PDB_00192	-	0.15	0.14	0.19	5	3213	22	0	22	0	31
PDB_00195	-	-0.01	0.00	0.00	0	3470	16	0	16	0	42
PDB_00196	-	0.85	0.86	0.86	24	1568	4	0	4	0	4
PDB_00197	-	1.00	1.00	1.00	7	293	3	0	0	3	0
PDB_00200	-	0.94	0.89	1.00	8	202	0	0	0	0	1
PDB_00201	-	0.77	0.60	1.00	6	319	0	0	0	0	4
PDB_00202	-	0.96	0.93	1.00	13	548	1	0	0	1	1
PDB_00203	-	0.96	0.92	1.00	12	549	0	0	0	0	1
PDB_00205	-	0.84	0.71	1.00	10	425	0	0	0	0	4
PDB_00206	-	1.00	1.00	1.00	8	268	0	0	0	0	0
PDB_00207	-	0.92	0.86	1.00	12	366	0	0	0	0	2
PDB_00209	-	0.56	0.45	0.71	5	554	2	0	2	0	6
PDB_00211	-	0.89	0.80	1.00	8	182	0	0	0	0	2
PDB_00214	-	0.73	0.55	1.00	6	400	0	0	0	0	5
PDB_00215	-	-0.02	0.00	0.00	0	1106	22	0	22	0	24
PDB_00219	-	1.00	1.00	1.00	7	203	0	0	0	0	0
PDB_00221	-	0.82	0.78	0.88	7	245	1	0	1	0	2
PDB_00224	-	0.87	0.88	0.88	7	182	1	0	1	0	1
PDB_00229	tRNA links to Rfam database...	0.96	0.91	1.00	21	2754	0	0	0	0	2
PDB_00234	-	-0.04	0.00	0.00	0	268	8	0	8	0	12
PDB_00236	-	-0.02	0.00	0.00	0	1110	18	0	18	0	24
PDB_00237	-	0.88	0.78	1.00	7	371	1	0	0	1	2
PDB_00239	-	0.27	0.22	0.36	4	809	7	0	7	0	14
PDB_00243	-	0.63	0.58	0.70	7	620	3	0	3	0	5
PDB_00248	-	0.91	0.83	1.00	10	266	0	0	0	0	2
PDB_00249	-	-0.02	0.00	0.00	0	273	3	0	3	0	11
PDB_00250	-	0.85	0.76	0.95	19	1750	1	0	1	0	6
PDB_00252	-	0.97	0.93	1.00	14	766	2	0	0	2	1
PDB_00254	-	-0.04	0.00	0.00	0	266	10	0	10	0	12
PDB_00256	-	0.49	0.75	0.33	3	316	7	6	0	1	1
PDB_00257	-	0.95	0.91	1.00	10	341	0	0	0	0	1
PDB_00258	-	1.00	1.00	1.00	8	245	0	0	0	0	0
PDB_00261	-	0.25	0.25	0.29	4	482	10	0	10	0	12
PDB_00262	-	0.25	0.25	0.27	6	1106	16	0	16	0	18
PDB_00264	-	-0.02	0.00	0.00	0	1112	16	0	16	0	18
PDB_00267	-	-0.03	0.00	0.00	0	366	12	0	12	0	14
PDB_00286	-	-0.03	0.00	0.00	0	184	8	0	6	2	6
PDB_00293	-	-0.01	0.00	0.00	0	1111	17	8	9	0	12
PDB_00307	-	0.18	0.18	0.19	8	11133	36	0	34	2	37
PDB_00312	-	0.46	0.44	0.50	4	427	4	0	4	0	5
PDB_00313	tRNA links to Rfam database...	0.75	0.79	0.71	15	2680	10	2	4	4	4
PDB_00317	-	1.00	1.00	1.00	10	368	0	0	0	0	0
PDB_00326	-	0.87	0.75	1.00	21	3720	0	0	0	0	7
PDB_00339	-	0.75	0.56	1.00	9	657	0	0	0	0	7
PDB_00341	-	0.38	0.31	0.50	5	693	5	0	5	0	11
PDB_00342	-	-0.02	0.00	0.00	0	762	18	0	18	0	10
PDB_00343	-	0.82	0.76	0.89	16	1578	3	0	2	1	5
PDB_00347	-	0.89	0.80	1.00	16	1160	0	0	0	0	4
PDB_00349	-	-0.02	0.00	0.00	0	930	16	0	16	0	14
PDB_00351	-	-0.02	0.00	0.00	0	555	6	0	6	0	12
PDB_00352	-	0.86	0.79	0.94	15	1209	1	0	1	0	4
PDB_00357	-	0.89	0.80	1.00	8	772	0	0	0	0	2
PDB_00358	-	0.08	0.09	0.08	4	10532	50	6	43	1	43
PDB_00362	tRNA links to Rfam database...	0.98	0.95	1.00	21	2829	0	0	0	0	1
PDB_00365	-	0.96	0.93	1.00	13	422	0	0	0	0	1
PDB_00371	-	0.86	0.80	0.92	12	548	1	0	1	0	3
PDB_00377	-	1.00	1.00	1.00	12	516	0	0	0	0	0
PDB_00378	-	0.88	0.79	1.00	11	692	1	0	0	1	3
PDB_00392	tRNA links to Rfam database...	0.61	0.67	0.56	14	2825	11	5	6	0	7
PDB_00400	-	-0.01	0.00	0.00	0	3144	16	0	16	0	34
PDB_00402	tRNA links to Rfam database...	0.29	0.30	0.28	7	2750	18	2	16	0	16
PDB_00411	-	0.71	0.67	0.77	10	582	3	0	3	0	5
PDB_00417	-	0.47	0.46	0.48	26	14142	30	1	27	2	30
PDB_00420	-	0.84	0.80	0.89	8	487	4	0	1	3	2
PDB_00425	tRNA links to Rfam database...	0.83	0.86	0.79	19	2677	5	2	3	0	3
PDB_00430	tRNA links to Rfam database...	0.81	0.84	0.78	21	3213	7	3	3	1	4
PDB_00431	tRNA links to Rfam database...	0.77	0.75	0.79	15	2192	5	0	4	1	5
PDB_00433	-	0.19	0.18	0.22	6	6643	21	2	19	0	28
PDB_00454	-	0.84	0.81	0.87	26	2671	4	0	4	0	6
PDB_00474	tRNA links to Rfam database...	0.96	0.91	1.00	21	2680	0	0	0	0	2
PDB_00481	-	0.73	0.54	1.00	14	1877	0	0	0	0	12
PDB_00513	-	1.00	1.00	1.00	7	224	0	0	0	0	0
PDB_00522	-	0.60	0.56	0.67	10	1113	5	0	5	0	8
PDB_00526	-	-0.01	0.00	0.00	0	294	6	1	5	0	3
PDB_00527	-	-0.02	0.00	0.00	0	294	6	1	5	0	5
PDB_00537	-	0.94	0.89	1.00	8	398	0	0	0	0	1
PDB_00553	mir-TAR links to Rfam database...	1.00	1.00	1.00	11	454	1	0	0	1	0
PDB_00570	-	0.90	0.82	1.00	18	2260	0	0	0	0	4
PDB_00571	tRNA links to Rfam database...	0.60	0.60	0.60	15	3296	10	6	4	0	10
PDB_00584	-	0.33	0.29	0.38	5	1472	8	0	8	0	12
PDB_00599	-	0.96	0.93	1.00	13	548	0	0	0	0	1
PDB_00603	-	0.95	0.90	1.00	9	244	0	0	0	0	1
PDB_00611	-	-0.01	0.00	0.00	0	769	11	2	9	0	11
PDB_00617	-	0.95	0.90	1.00	9	267	0	0	0	0	1
PDB_00627	-	0.70	0.71	0.71	12	1636	7	0	5	2	5
PDB_00629	-	-0.01	0.00	0.00	0	1637	16	4	12	0	23
PDB_00637	-	0.23	0.24	0.23	5	2324	18	2	15	1	16
PDB_00648	-	0.80	0.92	0.71	12	844	5	4	1	0	1
PDB_00663	-	-0.01	0.00	0.00	0	935	16	0	11	5	10
PDB_00667	tRNA links to Rfam database...	0.68	0.68	0.68	15	2828	9	4	3	2	7
PDB_00681	-	-0.01	0.00	0.00	0	1256	19	2	17	0	19
PDB_00682	-	-0.03	0.00	0.00	0	482	14	0	14	0	16
PDB_00686	-	0.94	0.89	1.00	17	686	0	0	0	0	2
PDB_00687	-	0.35	0.33	0.40	4	620	6	0	6	0	8
PDB_00692	-	0.67	0.60	0.75	12	1209	4	0	4	0	8
PDB_00693	-	0.94	0.88	1.00	15	1161	0	0	0	0	2
PDB_00698	-	0.94	0.89	1.00	17	844	0	0	0	0	2
PDB_00705	-	1.00	1.00	1.00	8	245	1	0	0	1	0
PDB_00709	-	-0.02	0.00	0.00	0	766	14	0	14	0	16
PDB_00710	-	-0.02	0.00	0.00	0	770	10	0	10	0	16
PDB_00713	-	0.43	0.43	0.45	9	1996	12	0	11	1	12
PDB_00716	HDV_ribozyme links to Rfam database...	-0.01	0.00	0.00	0	2680	22	0	21	1	23
PDB_00724	-	-0.01	0.00	0.00	0	2118	27	0	27	0	29
PDB_00725	-	0.86	0.80	0.92	12	582	1	0	1	0	3
PDB_00726	-	0.49	0.44	0.57	4	344	4	0	3	1	5
PDB_00727	-	1.00	1.00	1.00	7	554	4	0	0	4	0
PDB_00728	-	0.97	0.93	1.00	14	482	0	0	0	0	1
PDB_00732	-	0.30	0.30	0.32	9	2975	20	0	19	1	21
PDB_00733	-	0.23	0.23	0.23	7	2896	24	2	21	1	23
PDB_00734	-	0.77	0.70	0.88	7	223	1	0	1	0	3
PDB_00737	-	0.95	0.91	1.00	10	341	0	0	0	0	1
PDB_00740	-	0.79	0.64	1.00	7	224	0	0	0	0	4
PDB_00741	Entero_5_CRE links to Rfam database...	0.87	0.76	1.00	13	690	0	0	0	0	4
PDB_00750	-	0.83	0.78	0.88	38	11892	9	0	5	4	11
PDB_00751	-	0.87	0.77	1.00	10	585	2	0	0	2	3
PDB_00754	-	0.27	0.33	0.24	4	1468	15	4	9	2	8
PDB_00767	-	0.91	1.00	0.83	20	2187	8	4	0	4	0
PDB_00800	-	0.30	0.31	0.30	9	2050	21	1	20	0	20
PDB_00806	-	0.68	0.56	0.82	14	1813	4	0	3	1	11
PDB_00807	-	0.75	0.61	0.93	14	1876	5	0	1	4	9
PDB_00809	-	0.88	0.79	1.00	11	485	0	0	0	0	3
PDB_00810	s2m links to Rfam database...	0.76	0.59	1.00	10	1071	0	0	0	0	7
PDB_00815	-	0.58	0.56	0.63	5	622	6	0	3	3	4
PDB_00823	-	-0.03	0.00	0.00	0	186	4	0	4	0	9
PDB_00828	Purine links to Rfam database...	0.86	0.78	0.95	21	2463	1	0	1	0	6
PDB_00829	Purine links to Rfam database...	0.86	0.75	1.00	18	2260	0	0	0	0	6
PDB_00842	-	1.00	1.00	1.00	8	370	0	0	0	0	0
PDB_00851	-	0.45	0.39	0.53	16	4723	14	0	14	0	25
PDB_00855	-	1.00	1.00	1.00	10	455	3	0	0	3	0
PDB_00857	-	0.80	0.80	0.80	12	1066	3	0	3	0	3
PDB_00863	-	0.74	0.61	0.92	11	978	1	0	1	0	7
PDB_00864	-	0.66	0.56	0.80	35	12997	11	0	9	2	28
PDB_00865	-	0.96	0.92	1.00	11	340	0	0	0	0	1
PDB_00868	-	-0.01	0.00	0.00	0	1311	15	4	11	0	14
PDB_00870	-	-0.02	0.00	0.00	0	1109	19	0	19	0	16
PDB_00871	-	-0.02	0.00	0.00	0	1106	22	0	22	0	24
PDB_00873	-	-0.01	0.00	0.00	0	4514	46	0	46	0	48
PDB_00874	-	0.05	0.05	0.08	1	933	12	2	10	0	19
PDB_00876	HIV_FE links to Rfam database...	0.97	0.95	1.00	19	971	0	0	0	0	1
PDB_00878	-	0.96	0.92	1.00	11	485	0	0	0	0	1
PDB_00883	-	1.00	1.00	1.00	12	618	0	0	0	0	0
PDB_00885	-	0.97	0.94	1.00	17	803	0	0	0	0	1
PDB_00886	-	-0.01	0.00	0.00	0	4148	38	0	38	0	40
PDB_00890	-	1.00	1.00	1.00	14	689	0	0	0	0	0
PDB_00891	-	-0.02	0.00	0.00	0	927	19	6	13	0	15
PDB_00892	-	0.00	0.00	0.00	0	2553	3	0	3	0	15
PDB_00906	-	-0.01	0.00	0.00	0	6627	43	0	43	0	48
PDB_00918	-	0.67	0.57	0.80	4	320	1	0	1	0	3
PDB_00923	-	1.00	1.00	1.00	6	184	1	0	0	1	0
PDB_00924	-	0.97	0.94	1.00	34	3621	2	0	0	2	2
PDB_00925	-	0.95	0.91	1.00	10	341	1	0	0	1	1
PDB_00928	-	0.79	0.63	1.00	5	295	0	0	0	0	3
PDB_00929	-	-0.02	0.00	0.00	0	762	18	0	18	0	20
PDB_00932	-	0.77	0.77	0.77	10	807	3	0	3	0	3
PDB_00937	-	0.94	0.89	1.00	16	614	0	0	0	0	2
PDB_00943	-	0.27	0.27	0.29	4	1417	12	0	10	2	11
PDB_00945	-	0.95	0.90	1.00	9	456	0	0	0	0	1
PDB_00960	-	-0.03	0.00	0.00	0	394	12	2	10	0	10
PDB_00961	-	1.00	1.00	1.00	10	1760	12	0	0	12	0
PDB_00964	-	1.00	1.00	1.00	9	621	4	0	0	4	0
PDB_00966	-	-0.03	0.00	0.00	0	244	9	2	7	0	7
PDB_00973	-	0.63	0.50	0.80	4	346	1	0	1	0	4
PDB_00974	-	1.00	1.00	1.00	9	369	0	0	0	0	0
PDB_00979	-	0.30	0.29	0.32	14	11737	32	2	28	2	34
PDB_00986	-	0.84	0.71	1.00	10	425	0	0	0	0	4
PDB_00987	-	0.79	0.63	1.00	10	551	0	0	0	0	6
PDB_01001	tRNA links to Rfam database...	0.52	0.56	0.50	10	2125	10	3	7	0	8
PDB_01002	tRNA links to Rfam database...	0.88	0.90	0.86	19	2753	5	3	0	2	2
PDB_01008	-	1.00	1.00	1.00	12	583	0	0	0	0	0
PDB_01009	tRNA links to Rfam database...	0.54	0.57	0.52	12	2462	12	5	6	1	9
PDB_01017	-	-0.03	0.00	0.00	0	422	13	0	13	0	14
PDB_01019	-	-0.03	0.00	0.00	0	422	13	0	13	0	14
PDB_01020	Purine links to Rfam database...	0.86	0.74	1.00	17	2261	1	0	0	1	6
PDB_01025	-	1.00	1.00	1.00	9	244	0	0	0	0	0
PDB_01035	-	0.96	0.92	1.00	24	1516	0	0	0	0	2
PDB_01040	-	0.30	0.30	0.32	6	1109	13	0	13	0	14
PDB_01044	-	1.00	1.00	1.00	16	930	3	0	0	3	0
PDB_01045	-	0.98	0.96	1.00	22	1203	1	0	0	1	1
PDB_01050	UnaL2 links to Rfam database...	0.88	0.85	0.92	11	618	3	0	1	2	2
PDB_01051	Telomerase-cil links to Rfam database...	0.88	0.85	0.92	11	891	5	0	1	4	2
PDB_01053	tRNA links to Rfam database...	1.00	1.00	1.00	16	1362	1	0	0	1	0
PDB_01056	-	0.94	0.89	1.00	8	245	1	0	0	1	1
PDB_01057	-	1.00	1.00	1.00	8	202	0	0	0	0	0
PDB_01059	-	1.00	1.00	1.00	7	224	0	0	0	0	0
PDB_01060	-	-0.01	0.00	0.00	0	1986	30	0	30	0	21
PDB_01061	-	0.14	0.15	0.16	6	3122	32	0	32	0	34
PDB_01062	-	-0.01	0.00	0.00	0	937	9	0	9	0	16
PDB_01065	-	0.37	0.40	0.40	4	221	6	0	6	0	6
PDB_01070	-	0.33	0.30	0.38	16	12678	27	2	24	1	38
PDB_01071	-	0.69	0.62	0.80	8	396	2	0	2	0	5
PDB_01073	SAM links to Rfam database...	0.86	0.74	1.00	25	4346	1	0	0	1	9
PDB_01074	-	-0.01	0.00	0.00	0	2746	29	3	26	0	25
PDB_01075	-	0.81	0.66	1.00	21	2394	0	0	0	0	11
PDB_01077	-	0.63	0.58	0.69	11	1937	6	0	5	1	8
PDB_01084	-	1.00	1.00	1.00	7	224	0	0	0	0	0
PDB_01097	-	0.93	0.88	1.00	7	203	0	0	0	0	1
PDB_01099	-	0.85	0.73	1.00	8	268	0	0	0	0	3
PDB_01100	-	0.60	0.50	0.73	11	1470	4	0	4	0	11
PDB_01108	-	1.00	1.00	1.00	9	222	0	0	0	0	0
PDB_01114	TPP links to Rfam database...	0.50	0.41	0.61	11	2832	7	0	7	0	16
PDB_01117	-	0.65	0.53	0.82	9	769	2	0	2	0	8
PDB_01118	-	0.92	0.84	1.00	16	1580	1	0	0	1	3
PDB_01119	-	0.82	0.86	0.80	12	615	3	2	1	0	2
PDB_01126	-	0.48	0.50	0.47	14	3051	18	2	14	2	14
PDB_01127	-	-0.01	0.00	0.00	0	976	16	0	14	2	14
PDB_01128	-	0.88	0.78	1.00	21	2754	0	0	0	0	6
PDB_01130	-	1.00	1.00	1.00	20	1750	2	0	0	2	0
PDB_01133	-	1.00	1.00	1.00	10	341	1	0	0	1	0
PDB_01135	-	-0.02	0.00	0.00	0	397	9	2	7	0	9
PDB_01137	-	0.70	0.50	1.00	4	321	0	0	0	0	4
PDB_01138	-	-0.02	0.00	0.00	0	316	9	0	9	0	7
PDB_01145	-	1.00	1.00	1.00	14	766	2	0	0	2	0
PDB_01150	-	0.93	0.88	1.00	7	224	1	0	0	1	1
PDB_01152	HIV_FS2 links to Rfam database...	0.88	0.79	1.00	11	550	0	0	0	0	3
PDB_01154	-	0.85	0.82	0.90	9	396	2	0	1	1	2
PDB_01156	-	-0.01	0.00	0.00	0	3799	29	0	29	0	35
PDB_01160	-	0.32	0.35	0.30	7	2057	16	4	12	0	13
PDB_01162	-	0.55	0.56	0.56	5	1531	8	0	4	4	4
PDB_01163	-	0.98	0.95	1.00	21	1014	0	0	0	0	1
PDB_01164	-	0.96	0.92	1.00	24	1516	0	0	0	0	2
PDB_01167	-	0.93	0.88	1.00	7	183	0	0	0	0	1
PDB_01168	-	0.86	0.75	1.00	6	184	0	0	0	0	2
PDB_01178	-	0.84	0.71	1.00	10	518	0	0	0	0	4
PDB_01194	-	0.69	0.60	0.82	9	485	2	0	2	0	6
PDB_01199	-	0.81	0.67	1.00	16	2129	0	0	0	0	8
PDB_01201	-	0.98	0.95	1.00	21	1107	0	0	0	0	1
PDB_01203	-	0.74	0.68	0.81	13	1160	3	2	1	0	6
PDB_01205	-	-0.02	0.00	0.00	0	1015	20	4	16	0	18
PDB_01208	-	0.89	0.80	1.00	16	1160	0	0	0	0	4
PDB_01209	-	0.89	0.80	1.00	16	1160	0	0	0	0	4
PDB_01212	-	0.89	0.80	1.00	16	1160	0	0	0	0	4
PDB_01213	-	0.88	0.78	1.00	14	1067	0	0	0	0	4
PDB_01216	-	0.89	0.80	1.00	16	1160	0	0	0	0	4
PDB_01219	-	-0.02	0.00	0.00	0	931	15	0	15	0	20
PDB_01237	-	1.00	1.00	1.00	8	268	2	0	0	2	0
PDB_01249	-	0.19	0.09	0.42	5	11163	7	3	4	0	49
PDB_01250	-	0.22	0.20	0.25	8	12058	24	4	20	0	33
PDB_01251	-	0.87	0.77	1.00	10	315	0	0	0	0	3
PDB_01255	-	0.71	0.64	0.78	36	12515	18	0	10	8	20
PDB_01260	-	0.53	0.48	0.60	12	1810	8	1	7	0	13
PDB_01262	-	-0.04	0.00	0.00	0	182	8	0	8	0	8
PDB_01281	-	-0.03	0.00	0.00	0	366	12	0	12	0	14
PDB_01299	-	0.74	0.67	0.83	10	891	2	1	1	0	5
PDB_01309	-	-0.01	0.00	0.00	0	9118	62	9	53	0	39
PDB_01313	-	-0.03	0.00	0.00	0	270	6	4	2	0	8
PDB_01325	-	0.91	0.83	1.00	10	266	0	0	0	0	2
PDB_01332	-	1.00	1.00	1.00	9	342	1	0	0	1	0
PDB_01337	-	-0.02	0.00	0.00	0	554	7	2	5	0	11
PDB_01338	-	-0.03	0.00	0.00	0	269	7	2	5	0	8
PDB_01340	-	1.00	1.00	1.00	8	292	0	0	0	0	0
RFA_00389	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	3	0	0	3	0
RFA_00390	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	3	0	0	3	0
RFA_00391	Hammerhead_3 links to Rfam database...	0.93	0.87	1.00	13	1418	2	0	0	2	2
RFA_00396	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	2	0	0	2	1
RFA_00402	Hammerhead_3 links to Rfam database...	0.33	0.33	0.33	5	1416	11	0	10	1	10
RFA_00409	Hammerhead_3 links to Rfam database...	0.67	0.60	0.75	9	1419	5	1	2	2	6
RFA_00416	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1470	3	0	0	3	0
RFA_00420	-	1.00	1.00	1.00	15	3306	15	0	0	15	0
RFA_00425	Hammerhead_3 links to Rfam database...	0.93	0.87	1.00	13	1640	4	0	0	4	2
RFA_00427	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1471	2	0	0	2	1
RFA_00429	-	1.00	1.00	1.00	9	771	2	0	0	2	0
RFA_00433	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	3	0	0	3	0
RFA_00434	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00436	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00440	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1470	3	0	0	3	0
RFA_00442	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	3	0	0	3	0
RFA_00444	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1525	2	0	0	2	0
RFA_00446	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1471	2	0	0	2	1
RFA_00449	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1471	2	0	0	2	1
RFA_00582	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	5980	21	0	0	21	0
RFA_00583	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4935	14	0	0	14	0
RFA_00584	Y_RNA links to Rfam database...	0.87	0.87	0.87	13	2911	14	0	2	12	2
RFA_00585	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4836	14	0	0	14	0
RFA_00586	Y_RNA links to Rfam database...	0.97	0.93	1.00	14	3902	16	0	0	16	1
RFA_00587	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4836	12	0	0	12	0
RFA_00588	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4545	16	0	0	16	0
RFA_00589	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4356	15	0	0	15	0
RFA_00590	-	0.89	0.80	1.00	12	5344	12	0	0	12	3
RFA_00594	Y_RNA links to Rfam database...	0.90	0.87	0.93	13	2761	10	0	1	9	2
RFA_00596	Y_RNA links to Rfam database...	0.00	0.00	0.00	0	5976	32	5	14	13	15
RFA_00603	Telomerase-cil links to Rfam database...	0.67	0.74	0.60	26	13487	22	4	13	5	9
RFA_00604	Telomerase-cil links to Rfam database...	0.71	0.74	0.68	26	13492	23	2	10	11	9
RFA_00610	Telomerase-cil links to Rfam database...	0.88	0.86	0.89	32	17169	12	0	4	8	5
RFA_00611	Telomerase-cil links to Rfam database...	0.80	0.80	0.80	28	13006	18	3	4	11	7
RFA_00613	Telomerase-cil links to Rfam database...	0.71	0.69	0.73	24	12847	17	4	5	8	11
RFA_00615	Telomerase-cil links to Rfam database...	0.62	0.69	0.56	24	13323	21	8	11	2	11
RFA_00636	HDV_ribozyme links to Rfam database...	0.44	0.46	0.43	13	3975	17	0	17	0	15
RFA_00642	Vimentin3 links to Rfam database...	0.39	0.33	0.46	6	2913	7	2	5	0	12
RFA_00643	Vimentin3 links to Rfam database...	0.30	0.28	0.33	5	2196	11	2	8	1	13
RFA_00644	Vimentin3 links to Rfam database...	-0.01	0.00	0.00	0	2685	16	5	11	0	18
RFA_00645	Vimentin3 links to Rfam database...	-0.01	0.00	0.00	0	2404	11	2	9	0	18
RFA_00649	Vimentin3 links to Rfam database...	0.75	0.78	0.74	14	2126	8	1	4	3	4
RFA_00651	Vimentin3 links to Rfam database...	0.25	0.22	0.29	4	2066	12	0	10	2	14
RFA_00653	Vimentin3 links to Rfam database...	0.34	0.33	0.35	6	2128	11	2	9	0	12
RFA_00654	Vimentin3 links to Rfam database...	0.23	0.22	0.25	4	2399	12	2	10	0	14
RFA_00658	Hammerhead_1 links to Rfam database...	0.59	0.50	0.70	7	1118	5	0	3	2	7
RFA_00659	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	1122	8	0	6	2	14
RFA_00664	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	980	11	0	10	1	14
RFA_00667	Hammerhead_1 links to Rfam database...	0.30	0.29	0.33	4	978	8	1	7	0	10
RFA_00668	Hammerhead_1 links to Rfam database...	0.41	0.43	0.40	6	975	9	0	9	0	8
RFA_00672	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	895	9	0	8	1	13
RFA_00673	Hammerhead_1 links to Rfam database...	0.44	0.36	0.56	5	1119	5	0	4	1	9
RFA_00674	Hammerhead_1 links to Rfam database...	0.42	0.36	0.50	5	1118	5	0	5	0	9
RFA_00675	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	980	11	0	10	1	14
RFA_00677	Hammerhead_1 links to Rfam database...	0.46	0.43	0.50	6	978	7	0	6	1	8
RFA_00678	Hammerhead_1 links to Rfam database...	0.37	0.29	0.50	4	938	4	0	4	0	10
RFA_00680	Hammerhead_1 links to Rfam database...	0.74	0.71	0.77	10	1115	7	0	3	4	4
RFA_00683	-	-0.01	0.00	0.00	0	1026	9	0	9	0	14
RFA_00684	Hammerhead_1 links to Rfam database...	0.66	0.64	0.69	9	977	6	0	4	2	5
RFA_00685	Hammerhead_1 links to Rfam database...	0.42	0.36	0.50	5	980	6	0	5	1	9
RFA_00704	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	988	3	0	2	1	14
RFA_00705	Hammerhead_1 links to Rfam database...	0.69	0.71	0.67	10	1020	5	0	5	0	4
RFA_00706	Hammerhead_1 links to Rfam database...	0.25	0.21	0.30	3	1025	7	0	7	0	11
RFA_00707	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	1027	8	0	8	0	14
RFA_00708	Hammerhead_1 links to Rfam database...	0.33	0.29	0.40	4	1025	6	0	6	0	10
RFA_00709	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	982	8	0	8	0	14
RFA_00710	Hammerhead_1 links to Rfam database...	0.07	0.07	0.10	1	980	9	0	9	0	13
RFA_00711	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	1023	12	0	12	0	14
RFA_00715	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	933	13	0	13	0	14
RFA_00716	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	936	10	0	10	0	14
RFA_00717	Hammerhead_1 links to Rfam database...	0.64	0.64	0.64	9	889	5	0	5	0	5
RFA_00720	-	0.71	0.71	0.71	10	1162	5	0	4	1	4
RFA_00721	-	0.32	0.29	0.36	4	1165	7	0	7	0	10
RFA_00730	s2m links to Rfam database...	0.69	0.67	0.73	8	892	4	1	2	1	4
RFA_00731	s2m links to Rfam database...	0.81	0.67	1.00	8	895	1	0	0	1	4
RFA_00733	s2m links to Rfam database...	0.81	0.67	1.00	8	895	1	0	0	1	4
RFA_00734	s2m links to Rfam database...	0.73	0.67	0.80	8	893	3	0	2	1	4
RFA_00736	s2m links to Rfam database...	0.81	0.67	1.00	8	895	1	0	0	1	4
RFA_00737	s2m links to Rfam database...	0.81	0.67	1.00	8	895	1	0	0	1	4
RFA_00745	s2m links to Rfam database...	0.81	0.67	1.00	8	938	1	0	0	1	4
RFA_00749	s2m links to Rfam database...	0.81	0.67	1.00	8	895	1	0	0	1	4
RFA_00758	s2m links to Rfam database...	0.76	0.58	1.00	7	896	0	0	0	0	5
RFA_00762	s2m links to Rfam database...	0.64	0.67	0.62	8	890	5	1	4	0	4
RFA_00763	s2m links to Rfam database...	0.81	0.67	1.00	8	895	1	0	0	1	4
RFA_00764	s2m links to Rfam database...	0.81	0.67	1.00	8	895	1	0	0	1	4
RFA_00765	s2m links to Rfam database...	0.81	0.67	1.00	8	895	1	0	0	1	4
RFA_00767	Corona_pk3 links to Rfam database...	0.63	0.56	0.71	10	1877	4	0	4	0	8
RFA_00768	Corona_pk3 links to Rfam database...	0.44	0.44	0.44	8	1873	11	1	9	1	10
RFA_00769	Corona_pk3 links to Rfam database...	0.54	0.56	0.53	10	1934	9	4	5	0	8
RFA_00770	Corona_pk3 links to Rfam database...	0.59	0.56	0.63	10	2000	9	0	6	3	8
RFA_00773	Corona_pk3 links to Rfam database...	0.55	0.56	0.56	10	1935	8	3	5	0	8
RFA_00779	Corona_pk3 links to Rfam database...	0.63	0.56	0.71	10	1939	4	3	1	0	8
RFA_00786	Gammaretro_CES links to Rfam database...	0.64	0.66	0.64	21	5017	12	2	10	0	11
RFA_00808	RydC links to Rfam database...	0.65	0.56	0.75	9	2004	3	0	3	0	7
RFA_00809	RydC links to Rfam database...	0.35	0.38	0.33	6	2127	12	1	11	0	10
SPR_00007	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00012	tRNA links to Rfam database...	0.23	0.25	0.22	5	2827	18	2	16	0	15
SPR_00013	tRNA links to Rfam database...	0.97	0.95	1.00	19	2831	0	0	0	0	1
SPR_00017	tRNA links to Rfam database...	0.93	1.00	0.88	21	2826	3	3	0	0	0
SPR_00020	tRNA links to Rfam database...	0.76	0.80	0.73	16	2679	9	2	4	3	4
SPR_00022	tRNA links to Rfam database...	0.52	0.52	0.52	11	2905	10	0	10	0	10
SPR_00023	tRNA links to Rfam database...	0.50	0.52	0.48	11	2827	12	3	9	0	10
SPR_00029	tRNA links to Rfam database...	0.17	0.20	0.16	4	2603	21	7	14	0	16
SPR_00030	-	0.60	0.57	0.63	12	2466	8	3	4	1	9
SPR_00032	tRNA links to Rfam database...	0.95	0.95	0.95	20	2535	3	0	1	2	1
SPR_00033	tRNA links to Rfam database...	0.95	0.95	0.95	20	2607	1	0	1	0	1
SPR_00034	-	0.95	0.95	0.95	20	2464	3	0	1	2	1
SPR_00036	tRNA links to Rfam database...	0.91	1.00	0.83	20	2751	5	4	0	1	0
SPR_00044	tRNA links to Rfam database...	0.33	0.35	0.32	7	2828	15	4	11	0	13
SPR_00045	tRNA links to Rfam database...	0.95	0.95	0.95	21	2828	2	0	1	1	1
SPR_00060	tRNA links to Rfam database...	0.50	0.52	0.48	11	2752	12	4	8	0	10
SPR_00064	tRNA links to Rfam database...	0.58	0.57	0.60	12	2830	8	2	6	0	9
SPR_00065	tRNA links to Rfam database...	0.92	1.00	0.84	21	2825	4	4	0	0	0
SPR_00066	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00068	tRNA links to Rfam database...	0.93	1.00	0.88	21	2826	4	3	0	1	0
SPR_00070	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	1	0	0	1	0
SPR_00074	tRNA links to Rfam database...	0.78	0.80	0.76	16	2829	6	1	4	1	4
SPR_00078	-	0.39	0.33	0.45	5	1880	6	1	5	0	10
SPR_00079	tRNA links to Rfam database...	1.00	1.00	1.00	19	2466	2	0	0	2	0
SPR_00080	tRNA links to Rfam database...	1.00	1.00	1.00	19	2396	0	0	0	0	0
SPR_00087	tRNA links to Rfam database...	0.46	0.45	0.47	9	2831	10	4	6	0	11
SPR_00088	tRNA links to Rfam database...	0.46	0.45	0.47	9	2831	10	4	6	0	11
SPR_00089	tRNA links to Rfam database...	0.46	0.45	0.47	9	2831	10	4	6	0	11
SPR_00090	tRNA links to Rfam database...	0.39	0.40	0.38	8	2829	13	4	9	0	12
SPR_00091	tRNA links to Rfam database...	0.46	0.45	0.47	9	2831	10	4	6	0	11
SPR_00095	tRNA links to Rfam database...	0.55	0.57	0.55	12	2828	10	4	6	0	9
SPR_00111	tRNA links to Rfam database...	1.00	1.00	1.00	21	2680	1	0	0	1	0
SPR_00112	tRNA links to Rfam database...	0.93	1.00	0.88	21	2677	5	3	0	2	0
SPR_00113	tRNA links to Rfam database...	1.00	1.00	1.00	20	2755	6	0	0	6	0
SPR_00114	tRNA links to Rfam database...	1.00	1.00	1.00	21	2680	2	0	0	2	0
SPR_00115	tRNA links to Rfam database...	0.83	0.81	0.85	17	2681	4	1	2	1	4
SPR_00116	tRNA links to Rfam database...	1.00	1.00	1.00	21	2680	2	0	0	2	0
SPR_00117	tRNA links to Rfam database...	0.67	0.71	0.63	15	2826	10	1	8	1	6
SPR_00121	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	5	0	0	5	0
SPR_00124	tRNA links to Rfam database...	0.82	0.82	0.82	18	2534	5	2	2	1	4
SPR_00126	-	0.36	0.35	0.39	7	2062	13	4	7	2	13
SPR_00127	-	0.24	0.28	0.22	5	2392	21	1	17	3	13
SPR_00137	tRNA links to Rfam database...	0.77	0.86	0.69	18	2900	14	4	4	6	3
SPR_00139	tRNA links to Rfam database...	0.92	1.00	0.84	21	2901	6	4	0	2	0
SPR_00141	tRNA links to Rfam database...	1.00	1.00	1.00	20	2755	2	0	0	2	0
SPR_00142	-	0.50	0.47	0.53	9	2611	11	1	7	3	10
SPR_00153	tRNA links to Rfam database...	0.37	0.38	0.36	8	2904	17	3	11	3	13
SPR_00155	tRNA links to Rfam database...	0.56	0.57	0.55	12	2904	11	3	7	1	9
SPR_00156	tRNA links to Rfam database...	0.51	0.57	0.46	12	2900	15	5	9	1	9
SPR_00163	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	4	0	0	4	0
SPR_00164	tRNA links to Rfam database...	0.30	0.33	0.28	7	2901	18	5	13	0	14
SPR_00166	-	0.45	0.47	0.43	9	2535	14	1	11	2	10
SPR_00167	tRNA links to Rfam database...	1.00	1.00	1.00	20	2536	3	0	0	3	0
SPR_00176	tRNA links to Rfam database...	0.54	0.60	0.50	12	2826	13	2	10	1	8
SPR_00177	tRNA links to Rfam database...	0.68	0.76	0.62	16	2824	11	3	7	1	5
SPR_00178	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	1	0	0	1	0
SPR_00183	-	0.35	0.35	0.37	7	2831	12	0	12	0	13
SPR_00191	tRNA links to Rfam database...	0.18	0.19	0.19	4	2829	17	4	13	0	17
SPR_00209	tRNA links to Rfam database...	0.60	0.63	0.57	12	3549	9	6	3	0	7
SPR_00215	tRNA links to Rfam database...	1.00	1.00	1.00	20	3550	4	0	0	4	0
SPR_00218	tRNA links to Rfam database...	0.51	0.60	0.44	12	3714	17	8	7	2	8
SPR_00219	tRNA links to Rfam database...	1.00	1.00	1.00	20	3721	8	0	0	8	0
SPR_00220	tRNA links to Rfam database...	-0.01	0.00	0.00	0	3721	24	4	16	4	20
SPR_00223	tRNA links to Rfam database...	0.84	0.80	0.89	16	3552	7	0	2	5	4
SPR_00224	tRNA links to Rfam database...	0.45	0.50	0.42	10	3717	19	5	9	5	10
SPR_00225	tRNA links to Rfam database...	0.70	0.86	0.58	18	3710	15	8	5	2	3
SPR_00227	tRNA links to Rfam database...	0.25	0.29	0.22	6	3459	24	5	16	3	15
SPR_00228	tRNA links to Rfam database...	0.93	1.00	0.87	20	3805	7	3	0	4	0
SPR_00229	tRNA links to Rfam database...	0.84	0.86	0.82	18	3381	5	3	1	1	3
SPR_00230	tRNA links to Rfam database...	0.43	0.48	0.40	10	3545	18	5	10	3	11
SPR_00235	tRNA links to Rfam database...	0.19	0.24	0.17	5	3711	25	7	18	0	16
SPR_00236	tRNA links to Rfam database...	0.32	0.35	0.30	7	3547	16	9	7	0	13
SPR_00246	tRNA links to Rfam database...	1.00	1.00	1.00	20	2681	3	0	0	3	0
SPR_00271	tRNA links to Rfam database...	0.52	0.57	0.48	12	2825	13	3	10	0	9
SPR_00273	tRNA links to Rfam database...	0.29	0.33	0.27	7	2824	20	2	17	1	14
SPR_00276	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	3	0	0	3	0
SPR_00279	tRNA links to Rfam database...	0.47	0.48	0.48	10	2905	11	6	5	0	11
SPR_00281	-	0.36	0.41	0.33	7	1995	14	3	11	0	10
SPR_00289	tRNA links to Rfam database...	0.74	0.80	0.70	16	2903	10	3	4	3	4
SPR_00294	tRNA links to Rfam database...	0.55	0.57	0.55	12	2828	11	3	7	1	9
SPR_00295	tRNA links to Rfam database...	0.95	0.95	0.95	20	2754	3	0	1	2	1
SPR_00297	tRNA links to Rfam database...	0.60	0.57	0.63	12	2756	7	1	6	0	9
SPR_00298	tRNA links to Rfam database...	0.27	0.25	0.31	5	2759	11	0	11	0	15
SPR_00309	tRNA links to Rfam database...	0.73	0.76	0.70	16	2903	10	2	5	3	5
SPR_00314	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	3	0	0	3	0
SPR_00315	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	2	0	0	2	0
SPR_00316	tRNA links to Rfam database...	0.93	1.00	0.88	21	2902	5	3	0	2	0
SPR_00320	tRNA links to Rfam database...	0.75	0.79	0.71	15	2754	8	1	5	2	4
SPR_00321	tRNA links to Rfam database...	0.93	1.00	0.88	21	2979	3	3	0	0	0
SPR_00329	tRNA links to Rfam database...	0.58	0.62	0.54	13	2826	13	4	7	2	8
SPR_00331	tRNA links to Rfam database...	0.89	1.00	0.80	20	2750	5	5	0	0	0
SPR_00333	tRNA links to Rfam database...	0.93	1.00	0.88	21	2751	3	3	0	0	0
SPR_00339	tRNA links to Rfam database...	0.47	0.52	0.42	11	2749	16	5	10	1	10
SPR_00352	tRNA links to Rfam database...	0.71	0.76	0.67	16	2902	9	3	5	1	5
SPR_00353	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00356	tRNA links to Rfam database...	0.95	0.95	0.95	20	2754	2	0	1	1	1
SPR_00358	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00359	tRNA links to Rfam database...	0.63	0.59	0.68	13	2907	7	0	6	1	9
SPR_00360	tRNA links to Rfam database...	0.32	0.32	0.33	7	2680	14	3	11	0	15
SPR_00362	-	1.00	1.00	1.00	13	1418	3	0	0	3	0
SPR_00363	-	0.24	0.27	0.24	4	1579	13	3	10	0	11
SPR_00364	-	0.52	0.55	0.50	11	2189	11	3	8	0	9
SPR_00365	-	0.68	0.77	0.61	17	2528	11	4	7	0	5
SPR_00366	-	0.88	0.90	0.86	18	2535	3	1	2	0	2
SPR_00367	-	0.74	0.77	0.71	17	2461	7	2	5	0	5
SPR_00373	tRNA links to Rfam database...	0.31	0.33	0.29	7	2826	17	7	10	0	14
SPR_00388	tRNA links to Rfam database...	0.93	0.86	1.00	18	4168	9	0	0	9	3
SPR_00393	tRNA links to Rfam database...	1.00	1.00	1.00	20	3808	5	0	0	5	0
SPR_00394	tRNA links to Rfam database...	0.50	0.52	0.48	11	3632	17	6	6	5	10
SPR_00395	tRNA links to Rfam database...	0.51	0.57	0.46	12	3979	20	6	8	6	9
SPR_00398	-	-0.01	0.00	0.00	0	2193	20	2	16	2	13
SPR_00399	-	0.62	0.75	0.52	12	2462	12	6	5	1	4
SPR_00402	tRNA links to Rfam database...	0.76	0.76	0.76	16	2535	9	0	5	4	5
SPR_00412	tRNA links to Rfam database...	0.64	0.71	0.58	15	3629	17	2	9	6	6
SPR_00414	tRNA links to Rfam database...	0.89	0.95	0.83	20	3546	9	3	1	5	1
SPR_00415	tRNA links to Rfam database...	0.47	0.48	0.48	10	3549	15	5	6	4	11
SPR_00416	tRNA links to Rfam database...	0.44	0.48	0.42	10	3546	20	2	12	6	11
SPR_00417	tRNA links to Rfam database...	0.65	0.68	0.63	15	3546	14	3	6	5	7
SPR_00418	tRNA links to Rfam database...	0.65	0.68	0.63	15	3546	14	3	6	5	7
SPR_00426	tRNA links to Rfam database...	0.76	0.76	0.76	16	2982	10	0	5	5	5
SPR_00434	tRNA links to Rfam database...	0.91	0.95	0.87	20	2827	3	3	0	0	1
SPR_00435	tRNA links to Rfam database...	0.76	0.76	0.76	16	2829	5	0	5	0	5
SPR_00436	tRNA links to Rfam database...	0.93	1.00	0.88	21	2826	6	3	0	3	0
SPR_00437	tRNA links to Rfam database...	0.93	1.00	0.88	21	2751	5	3	0	2	0
SPR_00438	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	1	0	0	1	0
SPR_00439	tRNA links to Rfam database...	0.30	0.35	0.26	7	2674	20	6	14	0	13
SPR_00445	tRNA links to Rfam database...	0.74	0.85	0.65	17	2977	9	5	4	0	3
SPR_00452	tRNA links to Rfam database...	0.67	0.76	0.59	16	2823	12	4	7	1	5
SPR_00456	tRNA links to Rfam database...	0.53	0.57	0.50	12	2826	15	6	6	3	9
SPR_00458	tRNA links to Rfam database...	0.87	0.95	0.79	19	2826	7	4	1	2	1
SPR_00459	tRNA links to Rfam database...	0.47	0.55	0.41	11	2748	16	8	8	0	9
SPR_00461	tRNA links to Rfam database...	0.72	0.68	0.76	13	2539	5	1	3	1	6
SPR_00462	tRNA links to Rfam database...	0.72	0.74	0.70	14	2395	7	3	3	1	5
SPR_00467	tRNA links to Rfam database...	0.58	0.60	0.57	12	2829	9	6	3	0	8
SPR_00476	tRNA links to Rfam database...	0.98	0.95	1.00	20	2755	0	0	0	0	1
SPR_00478	tRNA links to Rfam database...	0.76	0.76	0.76	16	2754	6	0	5	1	5
SPR_00479	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	1	0	0	1	0
SPR_00481	tRNA links to Rfam database...	0.58	0.57	0.60	12	2755	9	3	5	1	9
SPR_00482	tRNA links to Rfam database...	0.74	0.76	0.73	16	2679	7	0	6	1	5
SPR_00483	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	2	0	0	2	0
SPR_00489	tRNA links to Rfam database...	1.00	1.00	1.00	21	2680	4	0	0	4	0
SPR_00493	tRNA links to Rfam database...	0.68	0.68	0.68	15	2753	7	2	5	0	7
SPR_00496	tRNA links to Rfam database...	0.93	1.00	0.88	21	2751	3	3	0	0	0
SPR_00497	tRNA links to Rfam database...	0.98	0.95	1.00	20	2755	0	0	0	0	1
SPR_00498	tRNA links to Rfam database...	0.83	0.85	0.81	17	2982	6	0	4	2	3
SPR_00502	tRNA links to Rfam database...	0.86	0.86	0.86	18	2905	5	0	3	2	3
SPR_00504	tRNA links to Rfam database...	0.93	1.00	0.87	20	2827	3	3	0	0	0
SPR_00506	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	1	0	0	1	0
SPR_00509	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	1	0	0	1	0
SPR_00512	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00513	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	2	0	0	2	0
SPR_00517	tRNA links to Rfam database...	0.57	0.60	0.55	12	2828	12	5	5	2	8
SPR_00518	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	2	0	0	2	0
SPR_00519	tRNA links to Rfam database...	0.81	0.81	0.81	17	2535	5	0	4	1	4
SPR_00520	tRNA links to Rfam database...	0.76	0.72	0.81	13	2540	3	2	1	0	5
SPR_00533	tRNA links to Rfam database...	0.53	0.57	0.50	12	2751	12	4	8	0	9
SPR_00541	tRNA links to Rfam database...	0.31	0.33	0.30	7	3463	18	3	13	2	14
SPR_00542	tRNA links to Rfam database...	0.81	0.81	0.81	17	3549	7	2	2	3	4
SPR_00548	tRNA links to Rfam database...	0.33	0.33	0.33	7	3382	14	2	12	0	14
SPR_00550	tRNA links to Rfam database...	0.51	0.50	0.52	11	3807	15	0	10	5	11
SPR_00552	tRNA links to Rfam database...	0.19	0.21	0.18	4	2679	18	7	11	0	15
SPR_00557	tRNA links to Rfam database...	0.41	0.43	0.41	9	2828	13	1	12	0	12
SPR_00561	tRNA links to Rfam database...	0.40	0.43	0.39	9	2827	14	1	13	0	12
SPR_00590	tRNA links to Rfam database...	0.53	0.60	0.48	12	2978	15	4	9	2	8
SPR_00593	tRNA links to Rfam database...	0.63	0.63	0.63	12	2756	8	2	5	1	7
SPR_00595	tRNA links to Rfam database...	0.73	0.76	0.70	16	2752	8	3	4	1	5
SPR_00598	tRNA links to Rfam database...	0.76	0.81	0.71	17	2979	9	2	5	2	4
SPR_00610	tRNA links to Rfam database...	0.53	0.57	0.50	12	2532	12	0	12	0	9
SPR_00620	tRNA links to Rfam database...	0.76	0.81	0.71	17	2979	9	5	2	2	4
SPR_00629	-	0.91	1.00	0.83	15	1873	8	3	0	5	0
SPR_00632	tRNA links to Rfam database...	0.92	0.85	1.00	17	2539	0	0	0	0	3
SPR_00633	tRNA links to Rfam database...	0.50	0.55	0.46	11	2532	13	2	11	0	9
SPR_00721	tRNA links to Rfam database...	0.93	0.90	0.95	19	2906	5	0	1	4	2
SPR_00722	tRNA links to Rfam database...	0.76	0.80	0.73	16	2904	6	4	2	0	4
SPR_00750	tRNA links to Rfam database...	0.97	0.95	1.00	18	2538	2	0	0	2	1
SPR_00760	tRNA links to Rfam database...	0.86	0.95	0.77	20	3544	9	4	2	3	1
SPR_00768	-	0.33	0.39	0.29	7	2056	17	6	11	0	11
SPR_00777	tRNA links to Rfam database...	0.80	0.80	0.80	16	2608	6	2	2	2	4
SPR_00810	tRNA links to Rfam database...	0.58	0.63	0.55	12	3548	16	4	6	6	7
SPR_00816	tRNA links to Rfam database...	0.32	0.35	0.29	7	3462	20	5	12	3	13
SPR_00832	-	0.51	0.60	0.45	9	1633	12	5	6	1	6
SPR_00867	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00868	tRNA links to Rfam database...	0.79	0.81	0.77	17	2904	7	1	4	2	4
SPR_00882	tRNA links to Rfam database...	0.89	1.00	0.80	20	2603	6	5	0	1	0
SPR_00913	tRNA links to Rfam database...	0.29	0.33	0.27	7	2977	22	3	16	3	14
SPR_00932	tRNA links to Rfam database...	0.60	0.57	0.63	12	2831	9	4	3	2	9
SPR_00938	-	-0.01	0.00	0.00	0	1635	18	5	13	0	15
SPR_00943	tRNA links to Rfam database...	0.76	0.85	0.68	17	2531	10	5	3	2	3
SPR_00957	tRNA links to Rfam database...	0.78	0.76	0.80	16	2983	7	0	4	3	5
SPR_01040	tRNA links to Rfam database...	0.79	0.81	0.77	17	2753	8	1	4	3	4
SPR_01051	tRNA links to Rfam database...	0.74	0.76	0.73	16	2534	6	1	5	0	5
SPR_01095	tRNA links to Rfam database...	0.76	0.76	0.76	16	2829	6	0	5	1	5
SPR_01103	-	0.62	0.67	0.59	10	1753	10	0	7	3	5
SPR_01106	tRNA links to Rfam database...	0.51	0.52	0.50	11	2534	11	3	8	0	10
SPR_01117	tRNA links to Rfam database...	0.76	0.76	0.76	16	2982	7	0	5	2	5
SPR_01143	tRNA links to Rfam database...	0.34	0.33	0.35	7	2536	13	2	11	0	14
SPR_01157	tRNA links to Rfam database...	0.81	0.81	0.81	17	2754	6	0	4	2	4
SRP_00001	Bacteria_large_SRP links to Rfam database...	0.87	0.88	0.88	35	6746	6	1	4	1	5
SRP_00005	-	0.75	0.75	0.75	18	3981	10	0	6	4	6
SRP_00007	-	0.84	0.82	0.86	37	11892	10	1	5	4	8
SRP_00038	Bacteria_small_SRP links to Rfam database...	0.19	0.18	0.21	6	5021	23	2	21	0	27
SRP_00040	Bacteria_small_SRP links to Rfam database...	0.70	0.74	0.66	23	5530	14	1	11	2	8
SRP_00042	Bacteria_small_SRP links to Rfam database...	0.45	0.48	0.43	12	3977	18	0	16	2	13
SRP_00043	Bacteria_small_SRP links to Rfam database...	0.44	0.48	0.41	14	5016	23	4	16	3	15
SRP_00044	Bacteria_small_SRP links to Rfam database...	0.89	0.88	0.90	28	6074	4	1	2	1	4
SRP_00045	-	0.67	0.70	0.63	31	11886	19	2	16	1	13
SRP_00046	Bacteria_small_SRP links to Rfam database...	0.97	0.97	0.97	31	4721	2	0	1	1	1
SRP_00051	Bacteria_small_SRP links to Rfam database...	0.30	0.30	0.31	9	5431	22	2	18	2	21
SRP_00054	Bacteria_small_SRP links to Rfam database...	0.22	0.22	0.23	7	5534	24	3	21	0	25
SRP_00057	Bacteria_small_SRP links to Rfam database...	0.73	0.74	0.72	26	6292	12	1	9	2	9
SRP_00072	Bacteria_small_SRP links to Rfam database...	0.30	0.31	0.30	9	6298	27	1	20	6	20
SRP_00074	Bacteria_small_SRP links to Rfam database...	0.16	0.17	0.16	5	6523	31	4	23	4	24
SRP_00083	-	0.75	0.70	0.81	21	4825	5	0	5	0	9
SRP_00094	Bacteria_small_SRP links to Rfam database...	0.84	0.88	0.81	21	4069	7	1	4	2	3
SRP_00095	Bacteria_small_SRP links to Rfam database...	0.85	0.88	0.81	22	3978	7	1	4	2	3
SRP_00098	Bacteria_small_SRP links to Rfam database...	0.69	0.70	0.68	26	6403	14	1	11	2	11
SRP_00101	-	0.78	0.80	0.77	20	3544	10	0	6	4	5
SRP_00105	Bacteria_small_SRP links to Rfam database...	0.29	0.29	0.29	10	5531	24	1	23	0	24
SRP_00106	Bacteria_large_SRP links to Rfam database...	0.67	0.76	0.59	19	5221	16	5	8	3	6
SRP_00107	Bacteria_small_SRP links to Rfam database...	0.13	0.16	0.12	3	3629	25	5	18	2	16
SRP_00119	-	0.84	0.82	0.86	42	12992	11	0	7	4	9
SRP_00121	Bacteria_small_SRP links to Rfam database...	0.77	0.72	0.82	18	4256	7	0	4	3	7
SRP_00128	Bacteria_small_SRP links to Rfam database...	0.76	0.81	0.73	29	6746	13	1	10	2	7
SRP_00132	Bacteria_small_SRP links to Rfam database...	0.69	0.72	0.66	21	4819	14	0	11	3	8
SRP_00134	Bacteria_large_SRP links to Rfam database...	0.55	0.55	0.55	16	5966	17	3	10	4	13
SRP_00137	Bacteria_small_SRP links to Rfam database...	0.74	0.84	0.66	21	4154	11	4	7	0	4
SRP_00138	-	1.00	1.00	1.00	27	3978	6	0	0	6	0
SRP_00139	-	-0.01	0.00	0.00	0	2131	14	4	10	0	12
SRP_00141	Bacteria_small_SRP links to Rfam database...	0.94	0.95	0.93	39	6286	4	1	2	1	2
SRP_00145	Bacteria_small_SRP links to Rfam database...	0.96	0.98	0.95	39	6287	3	1	1	1	1
SRP_00146	Bacteria_small_SRP links to Rfam database...	0.93	0.94	0.92	34	5216	3	1	2	0	2
SRP_00161	Bacteria_small_SRP links to Rfam database...	0.36	0.41	0.33	9	2823	18	5	13	0	13
SRP_00162	Bacteria_small_SRP links to Rfam database...	0.87	0.87	0.87	20	2903	4	0	3	1	3
SRP_00163	Bacteria_small_SRP links to Rfam database...	0.39	0.42	0.37	11	3456	19	4	15	0	15
SRP_00170	Bacteria_small_SRP links to Rfam database...	0.55	0.56	0.54	14	4069	13	0	12	1	11
SRP_00193	-	0.18	0.19	0.18	7	6863	34	2	31	1	29
SRP_00194	Bacteria_small_SRP links to Rfam database...	0.77	0.81	0.74	17	3217	11	0	6	5	4
SRP_00200	Bacteria_small_SRP links to Rfam database...	0.80	0.78	0.82	28	6869	7	1	5	1	8
SRP_00209	Bacteria_small_SRP links to Rfam database...	0.63	0.59	0.67	16	4632	9	1	7	1	11
SRP_00213	Bacteria_small_SRP links to Rfam database...	0.65	0.64	0.67	16	4162	10	1	7	2	9
SRP_00214	-	0.90	0.92	0.88	22	3056	7	0	3	4	2
SRP_00215	Bacteria_small_SRP links to Rfam database...	0.82	0.80	0.83	20	3216	4	0	4	0	5
SRP_00216	Bacteria_small_SRP links to Rfam database...	0.95	0.96	0.93	26	3375	3	1	1	1	1
SRP_00217	Bacteria_small_SRP links to Rfam database...	0.94	0.96	0.92	23	3296	5	0	2	3	1
SRP_00219	Bacteria_small_SRP links to Rfam database...	0.89	0.87	0.91	20	3299	4	0	2	2	3
SRP_00221	-	0.76	0.81	0.71	17	3379	8	1	6	1	4
SRP_00223	-	0.87	0.85	0.89	17	3384	4	0	2	2	3
SRP_00231	Bacteria_small_SRP links to Rfam database...	0.87	0.88	0.86	30	5425	6	1	4	1	4
SRP_00233	Bacteria_small_SRP links to Rfam database...	1.00	1.00	1.00	33	5118	0	0	0	0	0
SRP_00235	-	1.00	1.00	1.00	33	5017	2	0	0	2	0
SRP_00243	Bacteria_small_SRP links to Rfam database...	0.95	0.90	1.00	28	5123	0	0	0	0	3
SRP_00244	Bacteria_small_SRP links to Rfam database...	0.51	0.51	0.51	20	6864	19	3	16	0	19
SRP_00250	Bacteria_small_SRP links to Rfam database...	0.78	0.81	0.76	29	6748	12	1	8	3	7
SRP_00251	Bacteria_small_SRP links to Rfam database...	0.75	0.78	0.72	28	6982	14	1	10	3	8
SRP_00256	-	-0.01	0.00	0.00	0	4251	28	4	23	1	22
SRP_00266	Bacteria_small_SRP links to Rfam database...	0.72	0.72	0.72	21	4627	9	1	7	1	8
SRP_00269	Bacteria_small_SRP links to Rfam database...	0.59	0.61	0.59	20	5016	14	3	11	0	13
SRP_00271	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	3213	27	1	26	0	24
SRP_00273	Bacteria_small_SRP links to Rfam database...	0.89	0.90	0.88	36	6745	7	1	4	2	4
SRP_00274	Bacteria_small_SRP links to Rfam database...	0.93	0.95	0.92	36	6864	5	1	2	2	2
SRP_00284	-	0.59	0.55	0.64	16	3716	9	3	6	0	13
SRP_00285	Bacteria_small_SRP links to Rfam database...	0.98	0.97	1.00	29	3712	0	0	0	0	1
SRP_00295	Bacteria_small_SRP links to Rfam database...	0.96	0.97	0.95	37	6864	5	1	1	3	1
SRP_00303	Bacteria_small_SRP links to Rfam database...	0.81	0.84	0.77	27	6635	10	1	7	2	5
SRP_00307	-	0.35	0.40	0.31	17	12826	37	9	28	0	26
SRP_00310	Bacteria_small_SRP links to Rfam database...	0.87	0.87	0.87	20	2903	5	0	3	2	3
SRP_00312	Bacteria_small_SRP links to Rfam database...	0.41	0.37	0.45	10	4164	12	1	11	0	17
SRP_00315	Bacteria_small_SRP links to Rfam database...	0.87	0.87	0.87	20	2903	3	0	3	0	3
SRP_00318	Bacteria_small_SRP links to Rfam database...	0.87	0.87	0.87	20	2980	4	0	3	1	3
SRP_00324	Bacteria_small_SRP links to Rfam database...	0.57	0.62	0.53	18	5322	16	5	11	0	11
SRP_00325	Bacteria_small_SRP links to Rfam database...	1.00	1.00	1.00	33	4338	0	0	0	0	0
SRP_00326	Bacteria_small_SRP links to Rfam database...	0.56	0.55	0.59	17	5021	12	3	9	0	14
SRP_00333	Bacteria_small_SRP links to Rfam database...	0.89	0.85	0.94	29	5120	2	0	2	0	5
SRP_00341	Bacteria_small_SRP links to Rfam database...	0.40	0.42	0.38	13	4719	21	3	18	0	18
SRP_00342	Bacteria_small_SRP links to Rfam database...	0.59	0.60	0.58	15	3979	16	1	10	5	10
SRP_00350	Bacteria_small_SRP links to Rfam database...	0.85	0.85	0.85	23	3889	5	1	3	1	4
SRP_00356	Bacteria_small_SRP links to Rfam database...	0.83	0.80	0.86	24	5022	4	0	4	0	6
SRP_00357	Bacteria_small_SRP links to Rfam database...	0.96	0.97	0.95	35	5319	4	1	1	2	1
SRP_00358	Bacteria_small_SRP links to Rfam database...	0.93	0.91	0.94	32	6294	4	1	1	2	3
SRP_00363	Bacteria_small_SRP links to Rfam database...	0.95	0.97	0.94	29	4722	5	0	2	3	1
SRP_00365	Bacteria_small_SRP links to Rfam database...	0.96	0.96	0.96	26	3376	1	0	1	0	1
SRP_00367	Bacteria_small_SRP links to Rfam database...	0.96	0.97	0.94	34	6750	3	1	1	1	1
SRP_00369	Bacteria_small_SRP links to Rfam database...	0.89	0.89	0.89	31	5743	5	1	3	1	4
SRP_00383	Bacteria_small_SRP links to Rfam database...	0.13	0.13	0.15	3	3220	17	4	13	0	21
TMR_00272	-	1.00	1.00	1.00	31	5120	2	0	0	2	0

^top

Performance of MCFold - scored lower in this pairwise comparison

1. Total counts & total scores for MCFold

Total Base Pair Counts
Total TP	8141
Total TN	2043904
Total FP	13141
Total FP CONTRA	1682
Total FP INCONS	8891
Total FP COMP	2568
Total FN	7391

Total Scores
MCC	0.473
Average MCC ± 95% Confidence Intervals	0.524 ± 0.025
Sensitivity	0.524
Positive Predictive Value	0.435
Nr of predictions	761

^top

2. Individual counts for MCFold [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
CRW_00552	5S_rRNA links to Rfam database...	0.22	0.26	0.20	10	7090	43	5	35	3	29
CRW_00573	5S_rRNA links to Rfam database...	0.91	0.93	0.90	37	7099	16	0	4	12	3
CRW_01492	5S_rRNA links to Rfam database...	0.66	0.69	0.63	29	7580	27	0	17	10	13
CRW_01493	5S_rRNA links to Rfam database...	0.72	0.74	0.70	32	7829	24	0	14	10	11
CRW_01494	5S_rRNA links to Rfam database...	0.70	0.73	0.67	29	7097	25	0	14	11	11
CRW_01496	5S_rRNA links to Rfam database...	0.53	0.55	0.51	24	8081	34	0	23	11	20
CRW_01497	5S_rRNA links to Rfam database...	0.86	0.85	0.87	34	7101	17	0	5	12	6
CRW_01498	5S_rRNA links to Rfam database...	0.43	0.49	0.38	21	8073	39	7	27	5	22
CRW_01499	5S_rRNA links to Rfam database...	0.22	0.24	0.20	10	7952	48	0	39	9	31
CRW_01500	5S_rRNA links to Rfam database...	0.87	0.89	0.85	34	7710	20	0	6	14	4
CRW_01504	5S_rRNA links to Rfam database...	0.91	0.93	0.89	40	7830	16	0	5	11	3
CRW_01507	5S_rRNA links to Rfam database...	0.75	0.78	0.73	32	7459	22	0	12	10	9
CRW_01521	5S_rRNA links to Rfam database...	0.34	0.36	0.33	13	6863	37	0	27	10	23
CRW_01532	5S_rRNA links to Rfam database...	0.39	0.43	0.36	16	7095	35	4	25	6	21
CRW_01533	5S_rRNA links to Rfam database...	0.49	0.54	0.45	20	7096	34	1	23	10	17
CRW_01534	5S_rRNA links to Rfam database...	0.84	0.84	0.84	31	7103	18	0	6	12	6
CRW_01535	5S_rRNA links to Rfam database...	0.52	0.57	0.48	21	7096	30	4	19	7	16
CRW_01537	5S_rRNA links to Rfam database...	0.28	0.32	0.26	12	7093	40	5	30	5	25
CRW_01539	5S_rRNA links to Rfam database...	0.70	0.73	0.68	27	7100	28	0	13	15	10
CRW_01540	5S_rRNA links to Rfam database...	0.79	0.81	0.77	30	7101	23	0	9	14	7
CRW_01542	5S_rRNA links to Rfam database...	0.96	0.95	0.97	35	7104	15	0	1	14	2
CRW_01548	5S_rRNA links to Rfam database...	0.51	0.57	0.47	21	6976	31	4	20	7	16
CRW_01555	5S_rRNA links to Rfam database...	0.19	0.22	0.17	8	8998	48	1	38	9	29
CRW_01557	5S_rRNA links to Rfam database...	0.82	0.84	0.79	31	7101	22	0	8	14	6
CRW_01562	5S_rRNA links to Rfam database...	0.80	0.81	0.79	30	7102	23	0	8	15	7
CRW_01563	5S_rRNA links to Rfam database...	0.48	0.54	0.43	20	6857	32	3	23	6	17
CRW_01568	5S_rRNA links to Rfam database...	0.54	0.59	0.50	22	7096	33	1	21	11	15
CRW_01569	5S_rRNA links to Rfam database...	0.90	0.89	0.92	33	7104	17	0	3	14	4
CRW_01570	5S_rRNA links to Rfam database...	0.75	0.78	0.73	29	7100	24	0	11	13	8
CRW_01572	5S_rRNA links to Rfam database...	0.51	0.57	0.46	21	6975	32	3	22	7	16
CRW_01573	5S_rRNA links to Rfam database...	0.80	0.84	0.78	31	7220	23	0	9	14	6
CRW_01578	5S_rRNA links to Rfam database...	0.91	0.92	0.89	34	7102	18	0	4	14	3
CRW_01580	5S_rRNA links to Rfam database...	0.20	0.24	0.18	9	7090	42	5	36	1	28
CRW_01583	5S_rRNA links to Rfam database...	0.52	0.57	0.48	21	7096	31	3	20	8	16
CRW_01584	5S_rRNA links to Rfam database...	0.87	0.89	0.85	33	7101	20	0	6	14	4
CRW_01595	5S_rRNA links to Rfam database...	-0.01	0.00	0.00	0	8463	53	11	41	1	37
CRW_01599	5S_rRNA links to Rfam database...	0.80	0.84	0.78	31	7100	23	0	9	14	6
CRW_01605	5S_rRNA links to Rfam database...	0.80	0.84	0.78	31	7100	23	0	9	14	6
CRW_01606	5S_rRNA links to Rfam database...	0.06	0.08	0.06	3	7091	49	3	43	3	34
CRW_01613	5S_rRNA links to Rfam database...	0.78	0.81	0.75	30	6981	25	0	10	15	7
CRW_01616	5S_rRNA links to Rfam database...	0.70	0.73	0.68	27	7100	26	0	13	13	10
CRW_01620	5S_rRNA links to Rfam database...	0.87	0.89	0.85	33	6982	19	0	6	13	4
CRW_01623	5S_rRNA links to Rfam database...	0.91	0.92	0.89	34	7102	20	0	4	16	3
NDB_00014	-	0.95	0.90	1.00	9	181	0	0	0	0	1
NDB_00015	-	0.36	0.40	0.36	4	265	7	0	7	0	6
NDB_00016	-	0.96	0.92	1.00	11	265	0	0	0	0	1
NDB_00047	-	0.96	0.92	1.00	11	265	0	0	0	0	1
NDB_00048	-	-0.02	0.00	0.00	0	1513	27	0	27	0	28
NDB_00049	-	0.96	0.92	1.00	12	313	0	0	0	0	1
NDB_00051	tRNA links to Rfam database...	0.50	0.58	0.44	14	2743	19	4	14	1	10
PDB_00001	-	0.96	0.92	1.00	11	265	0	0	0	0	1
PDB_00002	-	1.00	1.00	1.00	8	202	0	0	0	0	0
PDB_00003	-	0.91	0.92	0.92	11	339	1	0	1	0	1
PDB_00004	-	1.00	1.00	1.00	19	801	0	0	0	0	0
PDB_00005	Tymo_tRNA-like links to Rfam database...	0.76	0.79	0.73	11	931	6	2	2	2	3
PDB_00006	-	1.00	1.00	1.00	14	689	1	0	0	1	0
PDB_00011	-	0.96	0.92	1.00	11	265	0	0	0	0	1
PDB_00012	mir-TAR links to Rfam database...	1.00	1.00	1.00	7	399	4	0	0	4	0
PDB_00013	-	1.00	1.00	1.00	10	396	2	0	0	2	0
PDB_00017	-	0.66	0.67	0.67	10	688	6	0	5	1	5
PDB_00018	-	0.18	0.20	0.19	4	1014	17	2	15	0	16
PDB_00019	-	0.70	0.75	0.67	6	244	4	0	3	1	2
PDB_00020	-	0.35	0.35	0.39	7	762	11	0	11	0	13
PDB_00021	-	1.00	1.00	1.00	8	182	0	0	0	0	0
PDB_00022	-	1.00	1.00	1.00	9	244	1	0	0	1	0
PDB_00032	-	0.17	0.20	0.17	3	885	15	1	14	0	12
PDB_00034	-	0.78	0.75	0.82	9	367	2	0	2	0	3
PDB_00035	-	0.94	0.89	1.00	8	202	0	0	0	0	1
PDB_00036	-	-0.01	0.00	0.00	0	3447	39	1	38	0	27
PDB_00039	-	-0.01	0.00	0.00	0	5309	47	0	47	0	45
PDB_00040	-	1.00	1.00	1.00	10	266	1	0	0	1	0
PDB_00041	-	0.23	0.25	0.23	3	617	12	0	10	2	9
PDB_00043	-	0.84	0.85	0.85	11	422	2	0	2	0	2
PDB_00048	-	1.00	1.00	1.00	9	291	2	0	0	2	0
PDB_00049	-	1.00	1.00	1.00	10	221	0	0	0	0	0
PDB_00053	-	0.56	0.55	0.60	6	425	4	0	4	0	5
PDB_00054	-	0.95	0.90	1.00	9	181	0	0	0	0	1
PDB_00056	-	0.93	0.88	1.00	14	616	0	0	0	0	2
PDB_00057	-	1.00	1.00	1.00	10	341	2	0	0	2	0
PDB_00065	-	1.00	1.00	1.00	10	396	3	0	0	3	0
PDB_00070	tRNA links to Rfam database...	0.60	0.63	0.58	15	2824	14	1	10	3	9
PDB_00074	-	-0.03	0.00	0.00	0	366	12	0	12	0	12
PDB_00081	-	1.00	1.00	1.00	9	181	0	0	0	0	0
PDB_00088	-	1.00	1.00	1.00	12	423	2	0	0	2	0
PDB_00096	-	0.96	0.92	1.00	11	314	0	0	0	0	1
PDB_00098	-	1.00	1.00	1.00	6	225	3	0	0	3	0
PDB_00102	-	1.00	1.00	1.00	8	223	0	0	0	0	0
PDB_00104	-	-0.03	0.00	0.00	0	613	17	0	17	0	16
PDB_00107	-	1.00	1.00	1.00	11	454	3	0	0	3	0
PDB_00108	-	1.00	1.00	1.00	7	203	2	0	0	2	0
PDB_00110	-	1.00	1.00	1.00	7	246	3	0	0	3	0
PDB_00113	-	1.00	1.00	1.00	9	222	0	0	0	0	0
PDB_00115	-	-0.03	0.00	0.00	0	546	15	0	15	0	16
PDB_00116	-	1.00	1.00	1.00	6	225	2	0	0	2	0
PDB_00119	-	1.00	1.00	1.00	10	243	0	0	0	0	0
PDB_00120	-	0.95	0.90	1.00	9	222	0	0	0	0	1
PDB_00121	-	0.95	0.90	1.00	9	222	0	0	0	0	1
PDB_00122	-	0.96	0.92	1.00	11	289	0	0	0	0	1
PDB_00123	-	-0.01	0.00	0.00	0	4143	43	4	39	0	36
PDB_00124	-	-0.02	0.00	0.00	0	484	12	2	10	0	10
PDB_00125	-	-0.04	0.00	0.00	0	223	8	0	8	0	10
PDB_00128	-	0.77	0.71	0.83	10	484	2	0	2	0	4
PDB_00130	-	1.00	1.00	1.00	6	270	4	0	0	4	0
PDB_00132	-	0.91	0.92	0.92	11	423	1	0	1	0	1
PDB_00134	-	0.58	0.63	0.56	5	369	5	1	3	1	3
PDB_00136	-	0.75	0.77	0.74	20	2388	12	0	7	5	6
PDB_00137	-	0.96	0.92	1.00	12	394	0	0	0	0	1
PDB_00138	-	-0.02	0.00	0.00	0	369	11	0	9	2	8
PDB_00142	-	0.91	0.92	0.92	11	423	1	0	1	0	1
PDB_00149	-	1.00	1.00	1.00	15	688	1	0	0	1	0
PDB_00150	-	1.00	1.00	1.00	10	290	1	0	0	1	0
PDB_00152	-	1.00	1.00	1.00	8	182	0	0	0	0	0
PDB_00153	-	1.00	1.00	1.00	10	243	0	0	0	0	0
PDB_00155	-	0.74	0.75	0.75	6	317	4	0	2	2	2
PDB_00157	-	-0.01	0.00	0.00	0	3287	36	4	30	2	29
PDB_00158	-	1.00	1.00	1.00	20	841	0	0	0	0	0
PDB_00159	-	1.00	1.00	1.00	11	340	1	0	0	1	0
PDB_00160	-	1.00	1.00	1.00	9	267	2	0	0	2	0
PDB_00168	-	0.50	0.67	0.40	4	290	7	4	2	1	2
PDB_00169	-	1.00	1.00	1.00	10	221	0	0	0	0	0
PDB_00170	-	1.00	1.00	1.00	16	614	0	0	0	0	0
PDB_00171	-	1.00	1.00	1.00	12	423	1	0	0	1	0
PDB_00174	-	0.98	0.95	1.00	21	1014	0	0	0	0	1
PDB_00175	-	-0.01	0.00	0.00	0	4518	43	0	42	1	36
PDB_00178	-	1.00	1.00	1.00	11	517	3	0	0	3	0
PDB_00181	-	1.00	1.00	1.00	9	222	0	0	0	0	0
PDB_00182	-	1.00	1.00	1.00	9	244	1	0	0	1	0
PDB_00183	-	1.00	1.00	1.00	23	1462	0	0	0	0	0
PDB_00184	-	0.84	0.85	0.85	11	548	4	0	2	2	2
PDB_00185	-	0.93	0.93	0.93	26	2898	7	0	2	5	2
PDB_00190	-	0.95	0.90	1.00	9	222	0	0	0	0	1
PDB_00192	-	0.32	0.33	0.32	12	3202	26	2	24	0	24
PDB_00195	-	-0.01	0.00	0.00	0	3446	40	0	40	0	42
PDB_00196	-	0.96	0.93	1.00	26	1570	0	0	0	0	2
PDB_00197	-	1.00	1.00	1.00	7	293	3	0	0	3	0
PDB_00200	-	1.00	1.00	1.00	9	201	0	0	0	0	0
PDB_00201	-	0.90	0.90	0.90	9	315	2	0	1	1	1
PDB_00202	-	1.00	1.00	1.00	14	547	1	0	0	1	0
PDB_00203	-	0.47	0.54	0.44	7	545	9	0	9	0	6
PDB_00205	-	1.00	1.00	1.00	14	421	0	0	0	0	0
PDB_00206	-	1.00	1.00	1.00	8	268	1	0	0	1	0
PDB_00207	-	0.96	0.93	1.00	13	365	0	0	0	0	1
PDB_00209	-	-0.02	0.00	0.00	0	550	11	2	9	0	11
PDB_00211	-	0.95	0.90	1.00	9	181	0	0	0	0	1
PDB_00214	-	1.00	1.00	1.00	11	395	2	0	0	2	0
PDB_00215	-	-0.02	0.00	0.00	0	1105	23	0	23	0	24
PDB_00219	-	1.00	1.00	1.00	7	203	2	0	0	2	0
PDB_00221	-	0.88	0.89	0.89	8	244	2	0	1	1	1
PDB_00224	-	1.00	1.00	1.00	8	182	0	0	0	0	0
PDB_00229	tRNA links to Rfam database...	0.47	0.52	0.43	12	2747	19	4	12	3	11
PDB_00234	-	-0.04	0.00	0.00	0	266	10	0	10	0	12
PDB_00236	-	-0.02	0.00	0.00	0	1105	23	0	23	0	24
PDB_00237	-	0.89	0.89	0.89	8	369	4	0	1	3	1
PDB_00239	-	0.97	0.94	1.00	17	803	0	0	0	0	1
PDB_00243	-	-0.02	0.00	0.00	0	615	15	1	14	0	12
PDB_00248	-	0.96	0.92	1.00	11	265	0	0	0	0	1
PDB_00249	-	0.95	0.91	1.00	10	266	0	0	0	0	1
PDB_00250	-	0.86	0.88	0.85	22	1744	6	0	4	2	3
PDB_00252	-	-0.02	0.00	0.00	0	762	19	2	16	1	15
PDB_00254	-	-0.04	0.00	0.00	0	265	11	0	11	0	12
PDB_00256	-	-0.02	0.00	0.00	0	316	9	6	3	0	4
PDB_00257	-	0.95	0.91	1.00	10	341	0	0	0	0	1
PDB_00258	-	1.00	1.00	1.00	8	245	2	0	0	2	0
PDB_00261	-	0.97	0.94	1.00	15	481	0	0	0	0	1
PDB_00262	-	0.28	0.29	0.30	7	1105	16	0	16	0	17
PDB_00264	-	-0.02	0.00	0.00	0	1107	21	0	21	0	18
PDB_00267	-	-0.04	0.00	0.00	0	365	13	0	13	0	14
PDB_00286	-	-0.03	0.00	0.00	0	183	9	0	7	2	6
PDB_00293	-	-0.01	0.00	0.00	0	1107	21	8	13	0	12
PDB_00307	-	0.29	0.33	0.26	15	11118	45	4	38	3	30
PDB_00312	-	1.00	1.00	1.00	9	426	2	0	0	2	0
PDB_00313	tRNA links to Rfam database...	0.46	0.58	0.37	11	2671	20	6	13	1	8
PDB_00317	-	1.00	1.00	1.00	10	368	1	0	0	1	0
PDB_00326	-	0.59	0.64	0.55	18	3708	19	0	15	4	10
PDB_00339	-	1.00	1.00	1.00	16	650	1	0	0	1	0
PDB_00341	-	1.00	1.00	1.00	16	687	0	0	0	0	0
PDB_00342	-	-0.02	0.00	0.00	0	761	19	0	19	0	10
PDB_00343	-	0.65	0.67	0.64	14	1574	12	0	8	4	7
PDB_00347	-	0.43	0.45	0.43	9	1155	12	1	11	0	11
PDB_00349	-	-0.02	0.00	0.00	0	926	20	2	18	0	14
PDB_00351	-	-0.02	0.00	0.00	0	547	14	3	11	0	12
PDB_00352	-	0.18	0.21	0.18	4	1203	18	1	17	0	15
PDB_00357	-	-0.02	0.00	0.00	0	764	16	6	10	0	10
PDB_00358	-	-0.01	0.00	0.00	0	10520	66	10	55	1	47
PDB_00362	tRNA links to Rfam database...	0.25	0.32	0.21	7	2817	26	4	22	0	15
PDB_00365	-	1.00	1.00	1.00	14	421	0	0	0	0	0
PDB_00371	-	0.86	0.87	0.87	13	546	2	0	2	0	2
PDB_00377	-	1.00	1.00	1.00	12	516	1	0	0	1	0
PDB_00378	-	1.00	1.00	1.00	14	689	1	0	0	1	0
PDB_00392	tRNA links to Rfam database...	0.68	0.76	0.62	16	2824	13	2	8	3	5
PDB_00400	-	-0.01	0.00	0.00	0	3125	37	1	34	2	34
PDB_00402	tRNA links to Rfam database...	0.48	0.52	0.44	12	2748	18	0	15	3	11
PDB_00411	-	1.00	1.00	1.00	15	580	1	0	0	1	0
PDB_00417	-	0.41	0.43	0.40	24	14136	40	2	34	4	32
PDB_00420	-	0.80	0.80	0.80	8	486	6	0	2	4	2
PDB_00425	tRNA links to Rfam database...	0.40	0.45	0.36	10	2673	19	4	14	1	12
PDB_00430	tRNA links to Rfam database...	0.60	0.68	0.53	17	3208	17	6	9	2	8
PDB_00431	tRNA links to Rfam database...	0.34	0.40	0.30	8	2184	22	5	14	3	12
PDB_00433	-	0.20	0.24	0.17	8	6623	43	4	35	4	26
PDB_00454	-	-0.01	0.00	0.00	0	2666	35	0	35	0	32
PDB_00474	tRNA links to Rfam database...	0.61	0.65	0.58	15	2675	15	0	11	4	8
PDB_00481	-	-0.01	0.00	0.00	0	1864	27	0	27	0	26
PDB_00513	-	1.00	1.00	1.00	7	224	1	0	0	1	0
PDB_00522	-	0.51	0.56	0.48	10	1107	12	0	11	1	8
PDB_00526	-	0.33	0.33	0.33	1	297	9	0	2	7	2
PDB_00527	-	-0.02	0.00	0.00	0	290	10	3	7	0	5
PDB_00537	-	0.49	0.56	0.45	5	395	8	0	6	2	4
PDB_00553	mir-TAR links to Rfam database...	1.00	1.00	1.00	11	454	1	0	0	1	0
PDB_00570	-	-0.01	0.00	0.00	0	2251	27	8	19	0	22
PDB_00571	tRNA links to Rfam database...	-0.01	0.00	0.00	0	3287	34	3	31	0	25
PDB_00584	-	0.52	0.65	0.42	11	1459	15	3	12	0	6
PDB_00599	-	1.00	1.00	1.00	14	547	0	0	0	0	0
PDB_00603	-	1.00	1.00	1.00	10	243	0	0	0	0	0
PDB_00611	-	0.29	0.36	0.25	4	764	12	4	8	0	7
PDB_00617	-	1.00	1.00	1.00	10	266	0	0	0	0	0
PDB_00627	-	0.83	0.88	0.79	15	1634	8	0	4	4	2
PDB_00629	-	-0.02	0.00	0.00	0	1625	28	4	24	0	23
PDB_00637	-	0.90	0.90	0.90	19	2325	7	0	2	5	2
PDB_00648	-	-0.02	0.00	0.00	0	843	18	6	12	0	13
PDB_00663	-	-0.01	0.00	0.00	0	930	20	0	16	4	10
PDB_00667	tRNA links to Rfam database...	0.67	0.73	0.62	16	2824	14	0	10	4	6
PDB_00681	-	-0.02	0.00	0.00	0	1253	22	3	19	0	19
PDB_00682	-	-0.03	0.00	0.00	0	481	15	0	15	0	16
PDB_00686	-	0.97	0.95	1.00	18	685	0	0	0	0	1
PDB_00687	-	0.42	0.50	0.38	6	614	10	2	8	0	6
PDB_00692	-	0.13	0.15	0.14	3	1203	19	0	19	0	17
PDB_00693	-	0.82	0.82	0.82	14	1159	7	0	3	4	3
PDB_00698	-	1.00	1.00	1.00	19	842	0	0	0	0	0
PDB_00705	-	1.00	1.00	1.00	8	245	2	0	0	2	0
PDB_00709	-	-0.02	0.00	0.00	0	761	19	0	19	0	16
PDB_00710	-	-0.02	0.00	0.00	0	761	19	0	19	0	16
PDB_00713	-	0.21	0.24	0.21	5	1992	20	1	18	1	16
PDB_00716	HDV_ribozyme links to Rfam database...	0.22	0.26	0.19	6	2670	25	5	20	0	17
PDB_00724	-	-0.01	0.00	0.00	0	2115	30	1	29	0	29
PDB_00725	-	0.97	0.93	1.00	14	581	1	0	0	1	1
PDB_00726	-	0.43	0.44	0.44	4	342	8	0	5	3	5
PDB_00727	-	0.80	0.86	0.75	6	553	8	0	2	6	1
PDB_00728	-	0.97	0.93	1.00	14	482	0	0	0	0	1
PDB_00732	-	0.29	0.30	0.29	9	2972	26	2	20	4	21
PDB_00733	-	0.22	0.23	0.22	7	2894	27	3	22	2	23
PDB_00734	-	1.00	1.00	1.00	10	221	0	0	0	0	0
PDB_00737	-	1.00	1.00	1.00	11	340	0	0	0	0	0
PDB_00740	-	0.95	0.91	1.00	10	221	0	0	0	0	1
PDB_00741	Entero_5_CRE links to Rfam database...	1.00	1.00	1.00	17	686	0	0	0	0	0
PDB_00750	-	0.49	0.49	0.49	24	11886	31	2	23	6	25
PDB_00751	-	1.00	1.00	1.00	13	582	2	0	0	2	0
PDB_00754	-	0.32	0.42	0.26	5	1466	20	6	8	6	7
PDB_00767	-	1.00	1.00	1.00	20	2191	6	0	0	6	0
PDB_00800	-	0.32	0.34	0.32	10	2049	21	2	19	0	19
PDB_00806	-	0.75	0.72	0.78	18	1807	7	0	5	2	7
PDB_00807	-	0.82	0.78	0.86	18	1870	8	0	3	5	5
PDB_00809	-	1.00	1.00	1.00	14	482	0	0	0	0	0
PDB_00810	s2m links to Rfam database...	0.74	0.76	0.72	13	1063	7	0	5	2	4
PDB_00815	-	0.94	0.89	1.00	8	622	5	0	0	5	1
PDB_00823	-	0.94	0.89	1.00	8	182	0	0	0	0	1
PDB_00828	Purine links to Rfam database...	0.34	0.37	0.33	10	2455	22	1	19	2	17
PDB_00829	Purine links to Rfam database...	0.25	0.29	0.23	7	2248	23	6	17	0	17
PDB_00842	-	-0.02	0.00	0.00	0	369	10	0	9	1	8
PDB_00851	-	0.23	0.24	0.24	10	4711	32	0	32	0	31
PDB_00855	-	1.00	1.00	1.00	10	455	3	0	0	3	0
PDB_00857	-	-0.02	0.00	0.00	0	1062	19	6	13	0	15
PDB_00863	-	0.97	0.94	1.00	17	973	2	0	0	2	1
PDB_00864	-	0.59	0.59	0.59	37	12978	28	1	25	2	26
PDB_00865	-	1.00	1.00	1.00	12	339	0	0	0	0	0
PDB_00868	-	-0.01	0.00	0.00	0	1308	23	5	13	5	14
PDB_00870	-	-0.02	0.00	0.00	0	1105	23	0	23	0	16
PDB_00871	-	-0.02	0.00	0.00	0	1105	23	0	23	0	24
PDB_00873	-	-0.01	0.00	0.00	0	4513	47	0	47	0	48
PDB_00874	-	-0.02	0.00	0.00	0	926	20	0	20	0	20
PDB_00876	HIV_FE links to Rfam database...	0.97	0.95	1.00	19	971	0	0	0	0	1
PDB_00878	-	1.00	1.00	1.00	12	484	2	0	0	2	0
PDB_00883	-	1.00	1.00	1.00	12	618	0	0	0	0	0
PDB_00885	-	0.97	0.94	1.00	17	803	0	0	0	0	1
PDB_00886	-	-0.01	0.00	0.00	0	4143	43	4	39	0	40
PDB_00890	-	-0.02	0.00	0.00	0	686	17	2	15	0	14
PDB_00891	-	-0.02	0.00	0.00	0	927	19	6	13	0	15
PDB_00892	-	-0.01	0.00	0.00	0	2522	34	8	26	0	15
PDB_00906	-	-0.01	0.00	0.00	0	6617	54	6	47	1	48
PDB_00918	-	-0.02	0.00	0.00	0	317	10	0	8	2	7
PDB_00923	-	1.00	1.00	1.00	6	184	1	0	0	1	0
PDB_00924	-	0.71	0.72	0.70	26	3618	15	0	11	4	10
PDB_00925	-	1.00	1.00	1.00	11	340	1	0	0	1	0
PDB_00928	-	0.61	0.63	0.63	5	292	5	0	3	2	3
PDB_00929	-	-0.02	0.00	0.00	0	761	19	0	19	0	20
PDB_00932	-	0.25	0.31	0.22	4	802	14	3	11	0	9
PDB_00937	-	0.97	0.94	1.00	17	613	0	0	0	0	1
PDB_00943	-	0.23	0.27	0.21	4	1412	19	4	11	4	11
PDB_00945	-	-0.02	0.00	0.00	0	452	14	4	9	1	10
PDB_00960	-	-0.03	0.00	0.00	0	394	13	2	10	1	10
PDB_00961	-	1.00	1.00	1.00	10	1760	17	0	0	17	0
PDB_00964	-	1.00	1.00	1.00	9	621	4	0	0	4	0
PDB_00966	-	-0.03	0.00	0.00	0	243	10	3	7	0	7
PDB_00973	-	-0.03	0.00	0.00	0	340	11	4	7	0	8
PDB_00974	-	1.00	1.00	1.00	9	369	0	0	0	0	0
PDB_00979	-	0.00	0.00	0.00	0	11716	66	14	51	1	48
PDB_00986	-	0.96	0.93	1.00	13	422	0	0	0	0	1
PDB_00987	-	0.97	0.94	1.00	15	546	0	0	0	0	1
PDB_01001	tRNA links to Rfam database...	0.29	0.39	0.23	7	2115	23	9	14	0	11
PDB_01002	tRNA links to Rfam database...	0.34	0.38	0.31	8	2749	22	0	18	4	13
PDB_01008	-	1.00	1.00	1.00	12	583	1	0	0	1	0
PDB_01009	tRNA links to Rfam database...	0.43	0.52	0.35	11	2454	21	5	15	1	10
PDB_01017	-	-0.03	0.00	0.00	0	422	13	0	13	0	14
PDB_01019	-	-0.03	0.00	0.00	0	422	13	0	13	0	14
PDB_01020	Purine links to Rfam database...	0.29	0.30	0.29	7	2254	20	2	15	3	16
PDB_01025	-	1.00	1.00	1.00	9	244	1	0	0	1	0
PDB_01035	-	1.00	1.00	1.00	26	1514	0	0	0	0	0
PDB_01040	-	0.28	0.30	0.29	6	1107	15	2	13	0	14
PDB_01044	-	1.00	1.00	1.00	16	930	4	0	0	4	0
PDB_01045	-	1.00	1.00	1.00	23	1202	1	0	0	1	0
PDB_01050	UnaL2 links to Rfam database...	1.00	1.00	1.00	13	617	3	0	0	3	0
PDB_01051	Telomerase-cil links to Rfam database...	1.00	1.00	1.00	13	890	5	0	0	5	0
PDB_01053	tRNA links to Rfam database...	1.00	1.00	1.00	16	1362	6	0	0	6	0
PDB_01056	-	1.00	1.00	1.00	9	244	1	0	0	1	0
PDB_01057	-	1.00	1.00	1.00	8	202	1	0	0	1	0
PDB_01059	-	-0.03	0.00	0.00	0	223	8	2	6	0	7
PDB_01060	-	-0.01	0.00	0.00	0	1985	31	0	31	0	21
PDB_01061	-	0.17	0.18	0.18	7	3121	32	0	32	0	33
PDB_01062	-	0.97	0.94	1.00	15	931	4	0	0	4	1
PDB_01065	-	0.48	0.50	0.50	5	221	5	0	5	0	5
PDB_01070	-	0.68	0.70	0.66	38	12662	22	2	18	2	16
PDB_01071	-	0.92	0.92	0.92	12	393	1	0	1	0	1
PDB_01073	SAM links to Rfam database...	0.52	0.56	0.49	19	4332	22	1	19	2	15
PDB_01074	-	-0.01	0.00	0.00	0	2739	36	3	33	0	25
PDB_01075	-	0.92	0.91	0.94	29	2384	2	0	2	0	3
PDB_01077	-	0.29	0.32	0.27	6	1931	22	1	15	6	13
PDB_01084	-	1.00	1.00	1.00	7	224	3	0	0	3	0
PDB_01097	-	1.00	1.00	1.00	8	202	1	0	0	1	0
PDB_01099	-	1.00	1.00	1.00	11	265	0	0	0	0	0
PDB_01100	-	1.00	1.00	1.00	22	1463	1	0	0	1	0
PDB_01108	-	1.00	1.00	1.00	9	222	1	0	0	1	0
PDB_01114	TPP links to Rfam database...	0.54	0.59	0.50	16	2818	18	1	15	2	11
PDB_01117	-	0.94	0.94	0.94	16	763	1	0	1	0	1
PDB_01118	-	1.00	1.00	1.00	19	1577	7	0	0	7	0
PDB_01119	-	0.93	0.93	0.93	13	616	2	0	1	1	1
PDB_01126	-	0.46	0.50	0.42	14	3048	23	5	14	4	14
PDB_01127	-	0.96	0.93	1.00	13	977	7	0	0	7	1
PDB_01128	-	0.26	0.30	0.25	8	2743	27	3	21	3	19
PDB_01130	-	-0.01	0.00	0.00	0	1743	27	7	20	0	20
PDB_01133	-	1.00	1.00	1.00	10	341	2	0	0	2	0
PDB_01135	-	-0.02	0.00	0.00	0	395	11	2	9	0	9
PDB_01137	-	-0.03	0.00	0.00	0	314	11	2	9	0	8
PDB_01138	-	-0.02	0.00	0.00	0	316	9	0	9	0	7
PDB_01145	-	1.00	1.00	1.00	14	766	4	0	0	4	0
PDB_01150	-	1.00	1.00	1.00	8	223	2	0	0	2	0
PDB_01152	HIV_FS2 links to Rfam database...	1.00	1.00	1.00	14	547	1	0	0	1	0
PDB_01154	-	0.44	0.45	0.45	5	395	8	0	6	2	6
PDB_01156	-	-0.01	0.00	0.00	0	3792	36	1	35	0	35
PDB_01160	-	0.25	0.30	0.21	6	2052	24	1	21	2	14
PDB_01162	-	-0.01	0.00	0.00	0	1521	24	6	13	5	9
PDB_01163	-	1.00	1.00	1.00	22	1013	0	0	0	0	0
PDB_01164	-	1.00	1.00	1.00	26	1514	0	0	0	0	0
PDB_01167	-	1.00	1.00	1.00	8	182	0	0	0	0	0
PDB_01168	-	1.00	1.00	1.00	8	182	0	0	0	0	0
PDB_01178	-	0.89	0.86	0.92	12	515	2	0	1	1	2
PDB_01194	-	0.66	0.60	0.75	9	484	3	0	3	0	6
PDB_01199	-	-0.01	0.00	0.00	0	2114	31	2	29	0	24
PDB_01201	-	0.75	0.68	0.83	15	1110	3	0	3	0	7
PDB_01203	-	0.73	0.74	0.74	14	1157	5	4	1	0	5
PDB_01205	-	-0.02	0.00	0.00	0	1013	22	5	17	0	18
PDB_01208	-	0.14	0.15	0.15	3	1156	17	1	16	0	17
PDB_01209	-	0.43	0.45	0.43	9	1155	12	1	11	0	11
PDB_01212	-	0.43	0.45	0.43	9	1155	12	1	11	0	11
PDB_01213	-	0.15	0.17	0.16	3	1062	16	1	15	0	15
PDB_01216	-	0.43	0.45	0.43	9	1155	12	1	11	0	11
PDB_01219	-	-0.02	0.00	0.00	0	925	21	0	21	0	20
PDB_01237	-	1.00	1.00	1.00	8	268	3	0	0	3	0
PDB_01249	-	0.30	0.33	0.27	18	11109	52	12	36	4	36
PDB_01250	-	0.00	0.00	0.00	0	12036	54	18	36	0	41
PDB_01251	-	0.96	0.92	1.00	12	313	0	0	0	0	1
PDB_01255	-	0.47	0.45	0.50	25	12511	35	0	25	10	31
PDB_01260	-	0.55	0.56	0.56	14	1805	11	1	10	0	11
PDB_01262	-	1.00	1.00	1.00	8	182	1	0	0	1	0
PDB_01281	-	-0.04	0.00	0.00	0	365	13	0	13	0	14
PDB_01299	-	0.66	0.67	0.67	10	888	7	1	4	2	5
PDB_01309	-	-0.01	0.00	0.00	0	9122	58	9	49	0	39
PDB_01313	-	-0.03	0.00	0.00	0	266	10	4	6	0	8
PDB_01325	-	0.96	0.92	1.00	11	265	0	0	0	0	1
PDB_01332	-	1.00	1.00	1.00	9	342	2	0	0	2	0
PDB_01337	-	0.32	0.36	0.31	4	548	9	0	9	0	7
PDB_01338	-	-0.03	0.00	0.00	0	266	10	3	7	0	8
PDB_01340	-	1.00	1.00	1.00	8	292	0	0	0	0	0
RFA_00389	Hammerhead_3 links to Rfam database...	0.87	0.87	0.87	13	1416	9	0	2	7	2
RFA_00390	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	8	0	0	8	0
RFA_00391	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	8	0	0	8	0
RFA_00396	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	8	0	0	8	0
RFA_00402	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	8	0	0	8	0
RFA_00409	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	8	0	0	8	0
RFA_00416	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1470	9	0	0	9	0
RFA_00420	-	0.28	0.40	0.21	6	3292	31	8	15	8	9
RFA_00425	Hammerhead_3 links to Rfam database...	0.53	0.53	0.53	8	1638	14	0	7	7	7
RFA_00427	Hammerhead_3 links to Rfam database...	0.93	0.93	0.93	14	1470	9	0	1	8	1
RFA_00429	-	1.00	1.00	1.00	9	771	7	0	0	7	0
RFA_00433	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	8	0	0	8	0
RFA_00434	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	8	0	0	8	0
RFA_00436	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	8	0	0	8	0
RFA_00440	Hammerhead_3 links to Rfam database...	0.31	0.40	0.25	6	1461	19	3	15	1	9
RFA_00442	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	8	0	0	8	0
RFA_00444	Hammerhead_3 links to Rfam database...	0.33	0.40	0.29	6	1519	18	6	9	3	9
RFA_00446	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1470	9	0	0	9	0
RFA_00449	Hammerhead_3 links to Rfam database...	0.47	0.53	0.42	8	1466	15	4	7	4	7
RFA_00582	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	5980	27	0	0	27	0
RFA_00583	Y_RNA links to Rfam database...	0.87	0.87	0.87	13	4935	27	0	2	25	2
RFA_00584	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	2911	17	0	0	17	0
RFA_00585	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4836	29	0	0	29	0
RFA_00586	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	3901	24	0	0	24	0
RFA_00587	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4836	28	0	0	28	0
RFA_00588	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4545	27	0	0	27	0
RFA_00589	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4356	25	0	0	25	0
RFA_00590	-	1.00	1.00	1.00	15	5341	31	0	0	31	0
RFA_00594	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	2760	18	0	0	18	0
RFA_00596	Y_RNA links to Rfam database...	0.00	0.00	0.00	0	5958	49	13	24	12	15
RFA_00603	Telomerase-cil links to Rfam database...	0.67	0.60	0.75	21	13502	11	4	3	4	14
RFA_00604	Telomerase-cil links to Rfam database...	0.97	0.97	0.97	34	13495	15	0	1	14	1
RFA_00610	Telomerase-cil links to Rfam database...	0.70	0.54	0.91	20	17183	8	0	2	6	17
RFA_00611	Telomerase-cil links to Rfam database...	0.51	0.49	0.53	17	13009	20	6	9	5	18
RFA_00613	Telomerase-cil links to Rfam database...	0.24	0.23	0.26	8	12849	26	2	21	3	27
RFA_00615	Telomerase-cil links to Rfam database...	0.16	0.14	0.19	5	13339	22	5	17	0	30
RFA_00636	HDV_ribozyme links to Rfam database...	0.36	0.39	0.34	11	3973	29	0	21	8	17
RFA_00642	Vimentin3 links to Rfam database...	-0.01	0.00	0.00	0	2894	32	7	25	0	18
RFA_00643	Vimentin3 links to Rfam database...	-0.01	0.00	0.00	0	2186	27	2	23	2	18
RFA_00644	Vimentin3 links to Rfam database...	-0.01	0.00	0.00	0	2670	33	7	24	2	18
RFA_00645	Vimentin3 links to Rfam database...	-0.01	0.00	0.00	0	2387	28	3	25	0	18
RFA_00649	Vimentin3 links to Rfam database...	0.28	0.33	0.24	6	2120	22	2	17	3	12
RFA_00651	Vimentin3 links to Rfam database...	0.25	0.28	0.24	5	2059	21	0	16	5	13
RFA_00653	Vimentin3 links to Rfam database...	-0.01	0.00	0.00	0	2115	30	4	26	0	18
RFA_00654	Vimentin3 links to Rfam database...	-0.01	0.00	0.00	0	2386	29	4	25	0	18
RFA_00658	Hammerhead_1 links to Rfam database...	0.62	0.64	0.60	9	1113	10	0	6	4	5
RFA_00659	Hammerhead_1 links to Rfam database...	0.31	0.36	0.28	5	1110	16	1	12	3	9
RFA_00664	Hammerhead_1 links to Rfam database...	-0.02	0.00	0.00	0	974	16	0	16	0	14
RFA_00667	Hammerhead_1 links to Rfam database...	0.35	0.43	0.30	6	970	15	1	13	1	8
RFA_00668	Hammerhead_1 links to Rfam database...	0.23	0.29	0.20	4	970	16	3	13	0	10
RFA_00672	Hammerhead_1 links to Rfam database...	0.69	0.77	0.63	10	887	9	0	6	3	3
RFA_00673	Hammerhead_1 links to Rfam database...	0.60	0.64	0.56	9	1112	12	0	7	5	5
RFA_00674	Hammerhead_1 links to Rfam database...	0.96	0.93	1.00	13	1115	7	0	0	7	1
RFA_00675	Hammerhead_1 links to Rfam database...	-0.02	0.00	0.00	0	974	18	0	16	2	14
RFA_00677	Hammerhead_1 links to Rfam database...	0.46	0.50	0.44	7	974	12	0	9	3	7
RFA_00678	Hammerhead_1 links to Rfam database...	0.69	0.71	0.67	10	931	8	0	5	3	4
RFA_00680	Hammerhead_1 links to Rfam database...	0.62	0.64	0.60	9	1113	11	0	6	5	5
RFA_00683	-	-0.02	0.00	0.00	0	1017	20	0	18	2	14
RFA_00684	Hammerhead_1 links to Rfam database...	0.57	0.57	0.57	8	976	10	0	6	4	6
RFA_00685	Hammerhead_1 links to Rfam database...	0.64	0.64	0.64	9	976	10	0	5	5	5
RFA_00704	Hammerhead_1 links to Rfam database...	0.37	0.43	0.33	6	972	13	1	11	1	8
RFA_00705	Hammerhead_1 links to Rfam database...	0.35	0.43	0.30	6	1015	14	4	10	0	8
RFA_00706	Hammerhead_1 links to Rfam database...	-0.02	0.00	0.00	0	1016	19	5	14	0	14
RFA_00707	Hammerhead_1 links to Rfam database...	0.36	0.43	0.32	6	1016	13	5	8	0	8
RFA_00708	Hammerhead_1 links to Rfam database...	0.64	0.64	0.64	9	1021	10	0	5	5	5
RFA_00709	Hammerhead_1 links to Rfam database...	0.38	0.43	0.35	6	973	12	0	11	1	8
RFA_00710	Hammerhead_1 links to Rfam database...	0.41	0.43	0.40	6	975	13	0	9	4	8
RFA_00711	Hammerhead_1 links to Rfam database...	-0.02	0.00	0.00	0	1017	18	5	13	0	14
RFA_00715	Hammerhead_1 links to Rfam database...	-0.02	0.00	0.00	0	929	17	0	17	0	14
RFA_00716	Hammerhead_1 links to Rfam database...	0.05	0.07	0.06	1	928	17	0	17	0	13
RFA_00717	Hammerhead_1 links to Rfam database...	0.36	0.43	0.32	6	884	13	0	13	0	8
RFA_00720	-	0.35	0.43	0.30	6	1156	15	2	12	1	8
RFA_00721	-	-0.01	0.00	0.00	0	1156	21	3	17	1	14
RFA_00730	s2m links to Rfam database...	0.33	0.42	0.28	5	885	14	5	8	1	7
RFA_00731	s2m links to Rfam database...	0.34	0.42	0.29	5	886	13	4	8	1	7
RFA_00733	s2m links to Rfam database...	0.72	0.75	0.69	9	890	10	0	4	6	3
RFA_00734	s2m links to Rfam database...	0.51	0.58	0.47	7	888	12	1	7	4	5
RFA_00736	s2m links to Rfam database...	0.34	0.42	0.29	5	886	13	4	8	1	7
RFA_00737	s2m links to Rfam database...	0.34	0.42	0.29	5	886	13	4	8	1	7
RFA_00745	s2m links to Rfam database...	0.72	0.75	0.69	9	933	11	0	4	7	3
RFA_00749	s2m links to Rfam database...	0.34	0.42	0.29	5	886	13	4	8	1	7
RFA_00758	s2m links to Rfam database...	0.59	0.67	0.53	8	888	10	2	5	3	4
RFA_00762	s2m links to Rfam database...	0.33	0.42	0.28	5	885	13	5	8	0	7
RFA_00763	s2m links to Rfam database...	0.72	0.75	0.69	9	890	10	0	4	6	3
RFA_00764	s2m links to Rfam database...	0.72	0.75	0.69	9	890	10	0	4	6	3
RFA_00765	s2m links to Rfam database...	0.72	0.75	0.69	9	890	10	0	4	6	3
RFA_00767	Corona_pk3 links to Rfam database...	0.36	0.44	0.31	8	1865	19	3	15	1	10
RFA_00768	Corona_pk3 links to Rfam database...	0.36	0.44	0.31	8	1865	19	3	15	1	10
RFA_00769	Corona_pk3 links to Rfam database...	0.45	0.50	0.41	9	1931	18	2	11	5	9
RFA_00770	Corona_pk3 links to Rfam database...	-0.01	0.00	0.00	0	1992	29	2	22	5	18
RFA_00773	Corona_pk3 links to Rfam database...	0.43	0.50	0.38	9	1929	16	4	11	1	9
RFA_00779	Corona_pk3 links to Rfam database...	0.45	0.56	0.37	10	1926	17	7	10	0	8
RFA_00786	Gammaretro_CES links to Rfam database...	0.13	0.16	0.12	5	5008	37	5	32	0	27
RFA_00808	RydC links to Rfam database...	0.39	0.44	0.35	7	1996	19	1	12	6	9
RFA_00809	RydC links to Rfam database...	0.30	0.38	0.25	6	2121	18	6	12	0	10
SPR_00007	tRNA links to Rfam database...	0.20	0.24	0.18	5	2822	26	4	19	3	16
SPR_00012	tRNA links to Rfam database...	0.20	0.25	0.17	5	2820	27	4	21	2	15
SPR_00013	tRNA links to Rfam database...	0.20	0.25	0.17	5	2820	27	4	21	2	15
SPR_00017	tRNA links to Rfam database...	0.26	0.33	0.21	7	2817	26	8	18	0	14
SPR_00020	tRNA links to Rfam database...	0.44	0.55	0.37	11	2671	20	5	14	1	9
SPR_00022	tRNA links to Rfam database...	0.26	0.33	0.21	7	2892	27	9	18	0	14
SPR_00023	tRNA links to Rfam database...	0.48	0.57	0.41	12	2821	18	5	12	1	9
SPR_00029	tRNA links to Rfam database...	0.20	0.25	0.17	5	2598	25	9	16	0	15
SPR_00030	-	0.19	0.24	0.17	5	2455	26	5	20	1	16
SPR_00032	tRNA links to Rfam database...	0.71	0.76	0.67	16	2532	14	2	6	6	5
SPR_00033	tRNA links to Rfam database...	0.50	0.57	0.44	12	2601	18	2	13	3	9
SPR_00034	-	0.50	0.57	0.44	12	2458	19	2	13	4	9
SPR_00036	tRNA links to Rfam database...	0.28	0.35	0.23	7	2745	26	7	16	3	13
SPR_00044	tRNA links to Rfam database...	0.30	0.35	0.26	7	2823	25	5	15	5	13
SPR_00045	tRNA links to Rfam database...	0.72	0.77	0.68	17	2825	11	2	6	3	5
SPR_00060	tRNA links to Rfam database...	0.43	0.52	0.37	11	2745	20	3	16	1	10
SPR_00064	tRNA links to Rfam database...	0.19	0.24	0.17	5	2820	26	3	22	1	16
SPR_00065	tRNA links to Rfam database...	0.42	0.48	0.37	10	2823	22	4	13	5	11
SPR_00066	tRNA links to Rfam database...	0.26	0.33	0.21	7	2817	26	5	21	0	14
SPR_00068	tRNA links to Rfam database...	0.71	0.76	0.67	16	2826	15	0	8	7	5
SPR_00070	tRNA links to Rfam database...	0.42	0.48	0.37	10	2823	22	4	13	5	11
SPR_00074	tRNA links to Rfam database...	0.45	0.55	0.38	11	2821	21	5	13	3	9
SPR_00078	-	-0.01	0.00	0.00	0	1863	28	8	20	0	15
SPR_00079	tRNA links to Rfam database...	0.48	0.58	0.41	11	2458	21	3	13	5	8
SPR_00080	tRNA links to Rfam database...	0.67	0.74	0.61	14	2392	13	1	8	4	5
SPR_00087	tRNA links to Rfam database...	0.46	0.55	0.39	11	2822	19	5	12	2	9
SPR_00088	tRNA links to Rfam database...	0.46	0.55	0.39	11	2822	19	5	12	2	9
SPR_00089	tRNA links to Rfam database...	0.46	0.55	0.39	11	2822	19	5	12	2	9
SPR_00090	tRNA links to Rfam database...	0.46	0.55	0.39	11	2822	19	5	12	2	9
SPR_00091	tRNA links to Rfam database...	0.46	0.55	0.39	11	2822	19	5	12	2	9
SPR_00095	tRNA links to Rfam database...	0.74	0.81	0.68	17	2825	13	0	8	5	4
SPR_00111	tRNA links to Rfam database...	0.45	0.52	0.39	11	2673	18	4	13	1	10
SPR_00112	tRNA links to Rfam database...	0.63	0.71	0.56	15	2674	15	1	11	3	6
SPR_00113	tRNA links to Rfam database...	0.50	0.60	0.43	12	2747	19	5	11	3	8
SPR_00114	tRNA links to Rfam database...	0.76	0.81	0.71	17	2677	11	2	5	4	4
SPR_00115	tRNA links to Rfam database...	0.48	0.57	0.41	12	2672	20	4	13	3	9
SPR_00116	tRNA links to Rfam database...	0.95	0.95	0.95	20	2680	9	0	1	8	1
SPR_00117	tRNA links to Rfam database...	0.68	0.76	0.62	16	2824	16	2	8	6	5
SPR_00121	tRNA links to Rfam database...	0.26	0.33	0.22	7	2743	25	4	21	0	14
SPR_00124	tRNA links to Rfam database...	0.65	0.68	0.63	15	2532	14	0	9	5	7
SPR_00126	-	-0.01	0.00	0.00	0	2055	27	2	23	2	20
SPR_00127	-	0.25	0.33	0.20	6	2385	24	6	18	0	12
SPR_00137	tRNA links to Rfam database...	0.50	0.62	0.41	13	2894	22	7	12	3	8
SPR_00139	tRNA links to Rfam database...	0.45	0.52	0.39	11	2898	23	7	10	6	10
SPR_00141	tRNA links to Rfam database...	0.20	0.25	0.17	5	2745	26	5	20	1	15
SPR_00142	-	0.50	0.58	0.44	11	2603	18	2	12	4	8
SPR_00153	tRNA links to Rfam database...	0.73	0.81	0.65	17	2900	14	2	7	5	4
SPR_00155	tRNA links to Rfam database...	0.47	0.57	0.40	12	2896	19	4	14	1	9
SPR_00156	tRNA links to Rfam database...	0.48	0.57	0.41	12	2897	20	6	11	3	9
SPR_00163	tRNA links to Rfam database...	0.47	0.57	0.40	12	2820	21	6	12	3	9
SPR_00164	tRNA links to Rfam database...	0.47	0.57	0.40	12	2896	20	4	14	2	9
SPR_00166	-	0.35	0.42	0.30	8	2529	22	5	14	3	11
SPR_00167	tRNA links to Rfam database...	-0.01	0.00	0.00	0	2527	31	3	26	2	20
SPR_00176	tRNA links to Rfam database...	0.50	0.60	0.43	12	2822	18	4	12	2	8
SPR_00177	tRNA links to Rfam database...	0.15	0.19	0.13	4	2820	27	9	17	1	17
SPR_00178	tRNA links to Rfam database...	0.26	0.33	0.21	7	2817	26	7	19	0	14
SPR_00183	-	0.28	0.35	0.23	7	2820	24	5	18	1	13
SPR_00191	tRNA links to Rfam database...	0.48	0.52	0.44	11	2825	19	3	11	5	10
SPR_00209	tRNA links to Rfam database...	0.51	0.63	0.41	12	3541	22	7	10	5	7
SPR_00215	tRNA links to Rfam database...	0.49	0.60	0.40	12	3540	25	6	12	7	8
SPR_00218	tRNA links to Rfam database...	0.45	0.60	0.34	12	3706	25	13	10	2	8
SPR_00219	tRNA links to Rfam database...	0.93	0.95	0.90	19	3720	16	0	2	14	1
SPR_00220	tRNA links to Rfam database...	0.21	0.25	0.19	5	3714	31	5	17	9	15
SPR_00223	tRNA links to Rfam database...	0.41	0.50	0.34	10	3541	26	6	13	7	10
SPR_00224	tRNA links to Rfam database...	0.51	0.60	0.44	12	3714	22	7	8	7	8
SPR_00225	tRNA links to Rfam database...	0.64	0.81	0.52	17	3708	19	9	7	3	4
SPR_00227	tRNA links to Rfam database...	0.26	0.33	0.21	7	3452	29	3	24	2	14
SPR_00228	tRNA links to Rfam database...	0.44	0.60	0.33	12	3792	27	13	11	3	8
SPR_00229	tRNA links to Rfam database...	0.88	0.90	0.86	19	3381	13	0	3	10	2
SPR_00230	tRNA links to Rfam database...	0.26	0.33	0.21	7	3536	29	3	24	2	14
SPR_00235	tRNA links to Rfam database...	0.25	0.33	0.19	7	3705	31	12	17	2	14
SPR_00236	tRNA links to Rfam database...	0.25	0.35	0.18	7	3532	31	15	16	0	13
SPR_00246	tRNA links to Rfam database...	0.48	0.55	0.42	11	2675	21	5	10	6	9
SPR_00271	tRNA links to Rfam database...	0.19	0.24	0.17	5	2820	28	4	21	3	16
SPR_00273	tRNA links to Rfam database...	0.73	0.81	0.65	17	2824	13	2	7	4	4
SPR_00276	tRNA links to Rfam database...	0.68	0.76	0.62	16	2900	15	0	10	5	5
SPR_00279	tRNA links to Rfam database...	0.43	0.52	0.37	11	2896	22	3	16	3	10
SPR_00281	-	0.31	0.41	0.25	7	1988	21	7	14	0	10
SPR_00289	tRNA links to Rfam database...	0.95	0.95	0.95	19	2906	9	0	1	8	1
SPR_00294	tRNA links to Rfam database...	0.47	0.57	0.40	12	2820	19	4	14	1	9
SPR_00295	tRNA links to Rfam database...	0.71	0.76	0.67	16	2751	13	0	8	5	5
SPR_00297	tRNA links to Rfam database...	0.19	0.24	0.16	5	2744	28	5	21	2	16
SPR_00298	tRNA links to Rfam database...	0.19	0.25	0.16	5	2743	29	4	23	2	15
SPR_00309	tRNA links to Rfam database...	0.73	0.81	0.65	17	2900	14	2	7	5	4
SPR_00314	tRNA links to Rfam database...	0.74	0.81	0.68	17	2901	13	0	8	5	4
SPR_00315	tRNA links to Rfam database...	0.45	0.52	0.39	11	2898	21	7	10	4	10
SPR_00316	tRNA links to Rfam database...	0.68	0.76	0.62	16	2900	15	2	8	5	5
SPR_00320	tRNA links to Rfam database...	0.47	0.58	0.39	11	2747	19	4	13	2	8
SPR_00321	tRNA links to Rfam database...	0.37	0.43	0.33	9	2976	24	3	15	6	12
SPR_00329	tRNA links to Rfam database...	0.39	0.48	0.33	10	2820	21	3	17	1	11
SPR_00331	tRNA links to Rfam database...	0.47	0.55	0.41	11	2748	19	4	12	3	9
SPR_00333	tRNA links to Rfam database...	0.53	0.62	0.46	13	2747	18	4	11	3	8
SPR_00339	tRNA links to Rfam database...	0.47	0.57	0.40	12	2745	21	4	14	3	9
SPR_00352	tRNA links to Rfam database...	0.26	0.33	0.22	7	2894	25	8	17	0	14
SPR_00353	tRNA links to Rfam database...	0.73	0.81	0.65	17	2824	13	2	7	4	4
SPR_00356	tRNA links to Rfam database...	0.70	0.71	0.68	15	2753	14	0	7	7	6
SPR_00358	tRNA links to Rfam database...	0.71	0.80	0.64	16	2901	13	3	6	4	4
SPR_00359	tRNA links to Rfam database...	0.23	0.27	0.21	6	2897	26	4	19	3	16
SPR_00360	tRNA links to Rfam database...	0.26	0.32	0.23	7	2670	25	7	17	1	15
SPR_00362	-	0.51	0.54	0.50	7	1417	15	0	7	8	6
SPR_00363	-	-0.01	0.00	0.00	0	1572	24	4	20	0	15
SPR_00364	-	0.47	0.55	0.41	11	2184	18	3	13	2	9
SPR_00365	-	0.54	0.59	0.50	13	2530	17	1	12	4	9
SPR_00366	-	0.41	0.45	0.38	9	2532	21	1	14	6	11
SPR_00367	-	0.45	0.50	0.41	11	2458	21	0	16	5	11
SPR_00373	tRNA links to Rfam database...	0.64	0.71	0.58	15	2824	16	2	9	5	6
SPR_00388	tRNA links to Rfam database...	0.27	0.33	0.23	7	4156	31	8	15	8	14
SPR_00393	tRNA links to Rfam database...	0.51	0.60	0.44	12	3801	22	6	9	7	8
SPR_00394	tRNA links to Rfam database...	0.58	0.62	0.54	13	3631	21	0	11	10	8
SPR_00395	tRNA links to Rfam database...	0.19	0.24	0.16	5	3973	35	6	21	8	16
SPR_00398	-	-0.01	0.00	0.00	0	2187	28	5	19	4	13
SPR_00399	-	0.23	0.31	0.18	5	2457	25	8	15	2	11
SPR_00402	tRNA links to Rfam database...	-0.01	0.00	0.00	0	2525	32	3	28	1	21
SPR_00412	tRNA links to Rfam database...	0.47	0.57	0.40	12	3625	23	7	11	5	9
SPR_00414	tRNA links to Rfam database...	0.27	0.33	0.23	7	3540	27	8	15	4	14
SPR_00415	tRNA links to Rfam database...	0.45	0.57	0.36	12	3537	23	5	16	2	9
SPR_00416	tRNA links to Rfam database...	0.39	0.48	0.32	10	3539	25	5	16	4	11
SPR_00417	tRNA links to Rfam database...	0.42	0.50	0.37	11	3540	25	7	12	6	11
SPR_00418	tRNA links to Rfam database...	0.42	0.50	0.37	11	3540	25	7	12	6	11
SPR_00426	tRNA links to Rfam database...	0.61	0.67	0.56	14	2978	19	0	11	8	7
SPR_00434	tRNA links to Rfam database...	0.65	0.71	0.60	15	2825	16	2	8	6	6
SPR_00435	tRNA links to Rfam database...	0.38	0.43	0.35	9	2824	22	2	15	5	12
SPR_00436	tRNA links to Rfam database...	0.74	0.81	0.68	17	2825	12	2	6	4	4
SPR_00437	tRNA links to Rfam database...	0.49	0.57	0.43	12	2747	19	2	14	3	9
SPR_00438	tRNA links to Rfam database...	0.48	0.57	0.41	12	2746	18	3	14	1	9
SPR_00439	tRNA links to Rfam database...	0.71	0.80	0.64	16	2676	15	1	8	6	4
SPR_00445	tRNA links to Rfam database...	0.49	0.60	0.40	12	2973	20	5	13	2	8
SPR_00452	tRNA links to Rfam database...	0.19	0.24	0.16	5	2819	27	5	21	1	16
SPR_00456	tRNA links to Rfam database...	0.48	0.57	0.41	12	2821	20	2	15	3	9
SPR_00458	tRNA links to Rfam database...	0.20	0.25	0.17	5	2820	27	5	20	2	15
SPR_00459	tRNA links to Rfam database...	0.27	0.35	0.22	7	2743	25	9	16	0	13
SPR_00461	tRNA links to Rfam database...	0.42	0.47	0.38	9	2532	20	2	13	5	10
SPR_00462	tRNA links to Rfam database...	0.28	0.37	0.23	7	2384	24	7	17	0	12
SPR_00467	tRNA links to Rfam database...	-0.01	0.00	0.00	0	2817	33	6	27	0	20
SPR_00476	tRNA links to Rfam database...	0.34	0.38	0.31	8	2749	22	3	15	4	13
SPR_00478	tRNA links to Rfam database...	0.35	0.43	0.29	9	2744	23	6	16	1	12
SPR_00479	tRNA links to Rfam database...	0.68	0.76	0.62	16	2824	16	2	8	6	5
SPR_00481	tRNA links to Rfam database...	0.26	0.33	0.22	7	2743	25	6	19	0	14
SPR_00482	tRNA links to Rfam database...	0.27	0.33	0.23	7	2670	24	7	17	0	14
SPR_00483	tRNA links to Rfam database...	0.45	0.52	0.39	11	2822	20	4	13	3	10
SPR_00489	tRNA links to Rfam database...	0.36	0.43	0.31	9	2672	21	5	15	1	12
SPR_00493	tRNA links to Rfam database...	0.46	0.50	0.42	11	2749	18	4	11	3	11
SPR_00496	tRNA links to Rfam database...	0.37	0.43	0.33	9	2748	21	0	18	3	12
SPR_00497	tRNA links to Rfam database...	0.34	0.38	0.31	8	2749	22	3	15	4	13
SPR_00498	tRNA links to Rfam database...	0.83	0.85	0.81	17	2982	12	0	4	8	3
SPR_00502	tRNA links to Rfam database...	0.45	0.52	0.39	11	2898	21	6	11	4	10
SPR_00504	tRNA links to Rfam database...	0.43	0.50	0.37	10	2823	20	6	11	3	10
SPR_00506	tRNA links to Rfam database...	0.64	0.70	0.58	14	2902	17	1	9	7	6
SPR_00509	tRNA links to Rfam database...	0.20	0.25	0.18	5	2898	28	0	23	5	15
SPR_00512	tRNA links to Rfam database...	0.64	0.70	0.58	14	2902	17	0	10	7	6
SPR_00513	tRNA links to Rfam database...	0.73	0.75	0.71	15	2905	12	0	6	6	5
SPR_00517	tRNA links to Rfam database...	0.36	0.45	0.30	9	2820	23	5	16	2	11
SPR_00518	tRNA links to Rfam database...	0.45	0.55	0.38	11	2897	20	5	13	2	9
SPR_00519	tRNA links to Rfam database...	0.55	0.57	0.55	12	2534	15	1	9	5	9
SPR_00520	tRNA links to Rfam database...	0.25	0.33	0.20	6	2526	25	7	17	1	12
SPR_00533	tRNA links to Rfam database...	0.45	0.52	0.39	11	2747	20	3	14	3	10
SPR_00541	tRNA links to Rfam database...	-0.01	0.00	0.00	0	3452	38	5	29	4	21
SPR_00542	tRNA links to Rfam database...	0.45	0.57	0.36	12	3537	23	4	17	2	9
SPR_00548	tRNA links to Rfam database...	0.49	0.57	0.43	12	3375	21	4	12	5	9
SPR_00550	tRNA links to Rfam database...	0.59	0.73	0.48	16	3795	20	9	8	3	6
SPR_00552	tRNA links to Rfam database...	-0.01	0.00	0.00	0	2669	32	6	26	0	19
SPR_00557	tRNA links to Rfam database...	0.16	0.19	0.15	4	2823	27	3	20	4	17
SPR_00561	tRNA links to Rfam database...	0.37	0.43	0.33	9	2823	24	1	17	6	12
SPR_00590	tRNA links to Rfam database...	0.49	0.60	0.41	12	2974	19	6	11	2	8
SPR_00593	tRNA links to Rfam database...	0.27	0.37	0.21	7	2741	27	7	20	0	12
SPR_00595	tRNA links to Rfam database...	0.49	0.57	0.43	12	2747	19	3	13	3	9
SPR_00598	tRNA links to Rfam database...	0.73	0.81	0.65	17	2977	14	2	7	5	4
SPR_00610	tRNA links to Rfam database...	0.51	0.57	0.46	12	2530	18	0	14	4	9
SPR_00620	tRNA links to Rfam database...	0.43	0.52	0.37	11	2973	20	7	12	1	10
SPR_00629	-	0.33	0.40	0.29	6	1870	20	1	14	5	9
SPR_00632	tRNA links to Rfam database...	0.27	0.35	0.22	7	2524	25	10	15	0	13
SPR_00633	tRNA links to Rfam database...	0.44	0.55	0.37	11	2526	20	5	14	1	9
SPR_00721	tRNA links to Rfam database...	0.19	0.24	0.16	5	2895	29	1	25	3	16
SPR_00722	tRNA links to Rfam database...	0.46	0.55	0.39	11	2898	21	5	12	4	9
SPR_00750	tRNA links to Rfam database...	0.21	0.26	0.19	5	2529	27	3	19	5	14
SPR_00760	tRNA links to Rfam database...	0.27	0.33	0.23	7	3540	28	6	17	5	14
SPR_00768	-	0.23	0.28	0.20	5	2055	23	2	18	3	13
SPR_00777	tRNA links to Rfam database...	0.45	0.55	0.38	11	2599	22	6	12	4	9
SPR_00810	tRNA links to Rfam database...	0.50	0.63	0.40	12	3540	25	7	11	7	7
SPR_00816	tRNA links to Rfam database...	0.27	0.35	0.22	7	3454	29	8	17	4	13
SPR_00832	-	-0.01	0.00	0.00	0	1627	26	5	21	0	15
SPR_00867	tRNA links to Rfam database...	0.45	0.52	0.39	11	2898	22	6	11	5	10
SPR_00868	tRNA links to Rfam database...	0.47	0.57	0.40	12	2896	19	5	13	1	9
SPR_00882	tRNA links to Rfam database...	0.20	0.25	0.17	5	2598	26	3	22	1	15
SPR_00913	tRNA links to Rfam database...	0.27	0.33	0.23	7	2972	27	4	20	3	14
SPR_00932	tRNA links to Rfam database...	0.21	0.24	0.19	5	2824	26	4	17	5	16
SPR_00938	-	-0.01	0.00	0.00	0	1628	26	5	20	1	15
SPR_00943	tRNA links to Rfam database...	0.76	0.85	0.68	17	2531	12	2	6	4	3
SPR_00957	tRNA links to Rfam database...	0.37	0.43	0.33	9	2976	24	1	17	6	12
SPR_01040	tRNA links to Rfam database...	0.76	0.81	0.71	17	2751	11	1	6	4	4
SPR_01051	tRNA links to Rfam database...	0.71	0.76	0.67	16	2532	12	0	8	4	5
SPR_01095	tRNA links to Rfam database...	0.45	0.52	0.39	11	2822	21	5	12	4	10
SPR_01103	-	0.63	0.73	0.55	11	1750	14	1	8	5	4
SPR_01106	tRNA links to Rfam database...	0.27	0.33	0.23	7	2525	24	7	17	0	14
SPR_01117	tRNA links to Rfam database...	0.41	0.48	0.36	10	2975	20	3	15	2	11
SPR_01143	tRNA links to Rfam database...	0.48	0.57	0.41	12	2527	19	2	15	2	9
SPR_01157	tRNA links to Rfam database...	0.70	0.76	0.64	16	2750	13	2	7	4	5
SRP_00001	Bacteria_large_SRP links to Rfam database...	0.94	0.95	0.93	38	6745	11	1	2	8	2
SRP_00005	-	0.09	0.13	0.08	3	3967	36	7	28	1	21
SRP_00007	-	0.16	0.18	0.15	8	11880	50	4	43	3	37
SRP_00038	Bacteria_small_SRP links to Rfam database...	0.25	0.27	0.23	9	5011	33	1	29	3	24
SRP_00040	Bacteria_small_SRP links to Rfam database...	0.60	0.65	0.57	20	5530	26	1	14	11	11
SRP_00042	Bacteria_small_SRP links to Rfam database...	0.43	0.48	0.40	12	3975	25	1	17	7	13
SRP_00043	Bacteria_small_SRP links to Rfam database...	0.25	0.28	0.23	8	5015	34	4	23	7	21
SRP_00044	Bacteria_small_SRP links to Rfam database...	0.71	0.75	0.67	24	6069	23	0	12	11	8
SRP_00045	-	0.36	0.41	0.32	18	11878	42	10	29	3	26
SRP_00046	Bacteria_small_SRP links to Rfam database...	0.34	0.38	0.32	12	4715	29	0	26	3	20
SRP_00051	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	5411	49	2	47	0	30
SRP_00054	Bacteria_small_SRP links to Rfam database...	0.08	0.09	0.07	3	5523	43	1	38	4	29
SRP_00057	Bacteria_small_SRP links to Rfam database...	0.49	0.54	0.45	19	6286	29	2	21	6	16
SRP_00072	Bacteria_small_SRP links to Rfam database...	0.26	0.31	0.22	9	6287	37	4	28	5	20
SRP_00074	Bacteria_small_SRP links to Rfam database...	0.23	0.28	0.21	8	6516	42	4	27	11	21
SRP_00083	-	0.40	0.47	0.35	14	4811	28	5	21	2	16
SRP_00094	Bacteria_small_SRP links to Rfam database...	0.28	0.33	0.24	8	4062	27	4	21	2	16
SRP_00095	Bacteria_small_SRP links to Rfam database...	0.02	0.04	0.03	1	3967	37	4	33	0	24
SRP_00098	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	6391	50	6	44	0	37
SRP_00101	-	0.26	0.32	0.22	8	3533	29	8	21	0	17
SRP_00105	Bacteria_small_SRP links to Rfam database...	0.26	0.29	0.24	10	5524	32	3	28	1	24
SRP_00106	Bacteria_large_SRP links to Rfam database...	0.42	0.52	0.34	13	5215	31	8	17	6	12
SRP_00107	Bacteria_small_SRP links to Rfam database...	0.11	0.16	0.09	3	3622	34	8	22	4	16
SRP_00119	-	0.56	0.59	0.54	30	12985	40	0	26	14	21
SRP_00121	Bacteria_small_SRP links to Rfam database...	0.64	0.68	0.61	17	4250	21	0	11	10	8
SRP_00128	Bacteria_small_SRP links to Rfam database...	0.68	0.72	0.65	26	6746	23	1	13	9	10
SRP_00132	Bacteria_small_SRP links to Rfam database...	0.62	0.66	0.59	19	4819	24	0	13	11	10
SRP_00134	Bacteria_large_SRP links to Rfam database...	0.31	0.38	0.26	11	5953	35	8	23	4	18
SRP_00137	Bacteria_small_SRP links to Rfam database...	0.69	0.80	0.61	20	4153	20	5	8	7	5
SRP_00138	-	0.96	0.96	0.96	26	3978	12	0	1	11	1
SRP_00139	-	0.20	0.33	0.13	4	2114	27	11	16	0	8
SRP_00141	Bacteria_small_SRP links to Rfam database...	0.33	0.37	0.31	15	6280	35	2	31	2	26
SRP_00145	Bacteria_small_SRP links to Rfam database...	0.75	0.80	0.71	32	6283	18	1	12	5	8
SRP_00146	Bacteria_small_SRP links to Rfam database...	0.61	0.67	0.56	24	5210	24	1	18	5	12
SRP_00161	Bacteria_small_SRP links to Rfam database...	0.35	0.41	0.31	9	2821	21	4	16	1	13
SRP_00162	Bacteria_small_SRP links to Rfam database...	0.56	0.61	0.52	14	2899	19	3	10	6	9
SRP_00163	Bacteria_small_SRP links to Rfam database...	0.63	0.69	0.58	18	3455	17	2	11	4	8
SRP_00170	Bacteria_small_SRP links to Rfam database...	0.40	0.48	0.33	12	4059	26	8	16	2	13
SRP_00193	-	-0.01	0.00	0.00	0	6852	51	9	42	0	36
SRP_00194	Bacteria_small_SRP links to Rfam database...	0.68	0.71	0.65	15	3217	20	0	8	12	6
SRP_00200	Bacteria_small_SRP links to Rfam database...	0.89	0.92	0.87	33	6865	17	1	4	12	3
SRP_00209	Bacteria_small_SRP links to Rfam database...	0.19	0.22	0.17	6	4621	37	4	25	8	21
SRP_00213	Bacteria_small_SRP links to Rfam database...	0.32	0.40	0.27	10	4149	27	8	19	0	15
SRP_00214	-	0.90	0.92	0.88	22	3056	15	0	3	12	2
SRP_00215	Bacteria_small_SRP links to Rfam database...	0.45	0.52	0.39	13	3207	21	5	15	1	12
SRP_00216	Bacteria_small_SRP links to Rfam database...	0.76	0.81	0.71	22	3372	15	1	8	6	5
SRP_00217	Bacteria_small_SRP links to Rfam database...	0.58	0.67	0.52	16	3290	18	3	12	3	8
SRP_00219	Bacteria_small_SRP links to Rfam database...	0.61	0.70	0.53	16	3291	18	3	11	4	7
SRP_00221	-	0.70	0.76	0.64	16	3378	20	1	8	11	5
SRP_00223	-	0.50	0.60	0.43	12	3375	23	3	13	7	8
SRP_00231	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	5416	44	6	38	0	34
SRP_00233	Bacteria_small_SRP links to Rfam database...	0.28	0.30	0.26	10	5113	30	0	28	2	23
SRP_00235	-	0.97	0.97	0.97	32	5017	12	0	1	11	1
SRP_00243	Bacteria_small_SRP links to Rfam database...	0.97	0.97	0.97	30	5120	14	0	1	13	1
SRP_00244	Bacteria_small_SRP links to Rfam database...	0.47	0.51	0.43	20	6857	28	4	22	2	19
SRP_00250	Bacteria_small_SRP links to Rfam database...	0.72	0.75	0.69	27	6747	21	1	11	9	9
SRP_00251	Bacteria_small_SRP links to Rfam database...	0.71	0.75	0.68	27	6981	21	1	12	8	9
SRP_00256	-	-0.01	0.00	0.00	0	4240	39	8	30	1	22
SRP_00266	Bacteria_small_SRP links to Rfam database...	0.30	0.34	0.27	10	4619	30	3	24	3	19
SRP_00269	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	5008	43	3	39	1	33
SRP_00271	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	3204	36	5	31	0	24
SRP_00273	Bacteria_small_SRP links to Rfam database...	0.75	0.78	0.74	31	6744	18	1	10	7	9
SRP_00274	Bacteria_small_SRP links to Rfam database...	0.77	0.79	0.75	30	6863	18	1	9	8	8
SRP_00284	-	0.54	0.59	0.50	17	3707	20	1	16	3	12
SRP_00285	Bacteria_small_SRP links to Rfam database...	0.33	0.37	0.31	11	3705	27	2	23	2	19
SRP_00295	Bacteria_small_SRP links to Rfam database...	0.66	0.71	0.61	27	6859	22	3	14	5	11
SRP_00303	Bacteria_small_SRP links to Rfam database...	0.65	0.69	0.61	22	6634	26	1	13	12	10
SRP_00307	-	0.56	0.58	0.54	25	12834	28	8	13	7	18
SRP_00310	Bacteria_small_SRP links to Rfam database...	0.71	0.74	0.68	17	2901	15	0	8	7	6
SRP_00312	Bacteria_small_SRP links to Rfam database...	0.42	0.52	0.35	14	4146	26	6	20	0	13
SRP_00315	Bacteria_small_SRP links to Rfam database...	0.47	0.52	0.43	12	2898	20	2	14	4	11
SRP_00318	Bacteria_small_SRP links to Rfam database...	0.51	0.57	0.46	13	2975	22	0	15	7	10
SRP_00324	Bacteria_small_SRP links to Rfam database...	0.47	0.52	0.43	15	5321	25	5	15	5	14
SRP_00325	Bacteria_small_SRP links to Rfam database...	0.30	0.33	0.28	11	4332	33	1	27	5	22
SRP_00326	Bacteria_small_SRP links to Rfam database...	0.52	0.58	0.47	18	5012	23	4	16	3	13
SRP_00333	Bacteria_small_SRP links to Rfam database...	0.57	0.62	0.54	21	5112	19	5	13	1	13
SRP_00341	Bacteria_small_SRP links to Rfam database...	0.32	0.35	0.31	11	4717	31	0	25	6	20
SRP_00342	Bacteria_small_SRP links to Rfam database...	0.72	0.76	0.68	19	3977	21	1	8	12	6
SRP_00350	Bacteria_small_SRP links to Rfam database...	0.28	0.33	0.24	9	3879	29	3	25	1	18
SRP_00356	Bacteria_small_SRP links to Rfam database...	0.38	0.43	0.33	13	5011	31	4	22	5	17
SRP_00357	Bacteria_small_SRP links to Rfam database...	0.76	0.78	0.74	28	5318	17	1	9	7	8
SRP_00358	Bacteria_small_SRP links to Rfam database...	0.65	0.71	0.60	25	6286	24	3	14	7	10
SRP_00363	Bacteria_small_SRP links to Rfam database...	0.49	0.53	0.46	16	4718	29	1	18	10	14
SRP_00365	Bacteria_small_SRP links to Rfam database...	0.87	0.89	0.86	24	3375	11	0	4	7	3
SRP_00367	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	6736	50	6	44	0	35
SRP_00369	Bacteria_small_SRP links to Rfam database...	0.54	0.60	0.50	21	5736	31	2	19	10	14
SRP_00383	Bacteria_small_SRP links to Rfam database...	0.10	0.13	0.09	3	3208	33	3	26	4	21
TMR_00272	-	0.34	0.39	0.30	12	5111	32	2	26	4	19

^top

Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.

Table of contents:

Overview

Performance plots

Performance of ProbKnot - scored higher in this pairwise comparison

1. Total counts & total scores for ProbKnot

2. Individual counts for ProbKnot [ download as .csv ]

Performance of MCFold - scored lower in this pairwise comparison

1. Total counts & total scores for MCFold

2. Individual counts for MCFold [ download as .csv ]