CompaRNA - on-line benchmarks of RNA structure prediction methods

Laboratory of Structural Bioinformatics @ Adam Mickiewicz University in Poznan

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Overview

Metric	ProbKnot		RSpredict(seed)
MCC	0.544	>	0.369
Average MCC ± 95% Confidence Intervals	0.601 ± 0.017	>	0.246 ± 0.022
Sensitivity	0.533	>	0.229
Positive Predictive Value	0.555	<	0.597
Total TP	39944	>	17152
Total TN	96983139	<	97026395
Total FP	38076	>	13582
Total FP CONTRA	5037	>	1581
Total FP INCONS	27006	>	9998
Total FP COMP	6033	>	2003
Total FN	34987	<	57779
P-value	3.56938820447e-08

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Performance plots

Comparison of performance of ProbKnot and RSpredict(seed). Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data (individual counts for ProbKnot and RSpredict(seed)).
Average Matthews Correlation Coefficients (MCC) with 95% confidence intervals (CIs) were plotted for different RNA families, for which at least 3 members were present in the benchmarking dataset. 'n' denotes the number of MCCs used to calculate the average and CI. See tables below for raw data (individual counts for ProbKnot and RSpredict(seed)).
Comparison of average Matthews Correlation Coefficients (MCCs) for ProbKnot and RSpredict(seed). The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data (individual counts for ProbKnot and RSpredict(seed)).

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Performance of ProbKnot - scored higher in this pairwise comparison

1. Total counts & total scores for ProbKnot

Total Base Pair Counts
Total TP	39944
Total TN	96983139
Total FP	38076
Total FP CONTRA	5037
Total FP INCONS	27006
Total FP COMP	6033
Total FN	34987

Total Scores
MCC	0.544
Average MCC ± 95% Confidence Intervals	0.601 ± 0.017
Sensitivity	0.533
Positive Predictive Value	0.555
Nr of predictions	702

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2. Individual counts for ProbKnot [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00001	RNaseP_arch links to Rfam database...	0.63	0.61	0.65	46	34120	32	4	21	7	29
ASE_00002	RNaseP_arch links to Rfam database...	0.69	0.67	0.71	49	35442	28	4	16	8	24
ASE_00004	RNaseP_bact_a links to Rfam database...	0.70	0.69	0.72	67	47802	28	9	17	2	30
ASE_00005	RNaseP_bact_a links to Rfam database...	0.62	0.56	0.69	65	57876	33	4	25	4	52
ASE_00006	RNaseP_bact_a links to Rfam database...	0.54	0.53	0.55	49	47497	45	10	30	5	44
ASE_00007	RNaseP_bact_a links to Rfam database...	0.72	0.64	0.80	70	59598	25	0	17	8	40
ASE_00009	RNaseP_arch links to Rfam database...	0.38	0.37	0.40	25	26043	38	5	33	0	42
ASE_00010	RNaseP_bact_b links to Rfam database...	0.80	0.78	0.82	64	49692	33	1	13	19	18
ASE_00012	RNaseP_bact_a links to Rfam database...	0.50	0.46	0.56	56	73820	50	3	41	6	67
ASE_00014	RNaseP_arch links to Rfam database...	0.44	0.42	0.46	44	54190	57	2	49	6	62
ASE_00017	RNaseP_nuc links to Rfam database...	0.17	0.20	0.15	13	50951	92	28	48	16	51
ASE_00018	RNaseP_bact_a links to Rfam database...	0.55	0.52	0.59	70	80482	51	1	48	2	64
ASE_00020	RNaseP_bact_a links to Rfam database...	0.59	0.57	0.62	72	73803	51	6	39	6	54
ASE_00021	RNaseP_bact_a links to Rfam database...	0.62	0.56	0.69	90	104066	49	4	36	9	70
ASE_00022	RNaseP_bact_b links to Rfam database...	0.51	0.46	0.56	57	82927	51	5	39	7	67
ASE_00023	RNaseP_bact_a links to Rfam database...	0.67	0.66	0.68	84	84131	45	6	34	5	43
ASE_00025	RNaseP_nuc links to Rfam database...	0.29	0.31	0.27	22	78525	111	9	50	52	49
ASE_00026	RNaseP_bact_a links to Rfam database...	0.55	0.53	0.58	58	59585	47	3	39	5	52
ASE_00028	RNaseP_bact_b links to Rfam database...	0.73	0.70	0.76	88	84550	36	6	22	8	38
ASE_00029	RNaseP_bact_a links to Rfam database...	0.60	0.58	0.61	71	82912	48	13	32	3	51
ASE_00030	RNaseP_bact_a links to Rfam database...	0.66	0.61	0.72	88	85369	38	0	34	4	57
ASE_00031	RNaseP_bact_a links to Rfam database...	0.69	0.67	0.72	84	86619	42	2	31	9	42
ASE_00032	RNaseP_bact_a links to Rfam database...	0.55	0.55	0.56	65	80083	53	12	40	1	53
ASE_00033	RNaseP_bact_a links to Rfam database...	0.37	0.32	0.43	39	64890	53	4	47	2	82
ASE_00035	RNaseP_bact_a links to Rfam database...	0.39	0.37	0.40	44	70391	70	9	56	5	74
ASE_00036	RNaseP_bact_a links to Rfam database...	0.49	0.48	0.49	64	75725	69	9	57	3	68
ASE_00037	RNaseP_bact_a links to Rfam database...	0.41	0.36	0.47	40	59254	50	1	45	4	70
ASE_00038	RNaseP_bact_a links to Rfam database...	0.79	0.75	0.83	76	53536	22	1	15	6	25
ASE_00040	RNaseP_bact_a links to Rfam database...	0.46	0.40	0.53	53	78903	52	4	43	5	80
ASE_00041	RNaseP_bact_a links to Rfam database...	0.44	0.41	0.48	44	57538	53	5	43	5	64
ASE_00042	RNaseP_bact_a links to Rfam database...	0.50	0.46	0.54	66	89978	62	2	54	6	79
ASE_00044	RNaseP_bact_a links to Rfam database...	0.74	0.74	0.74	78	54509	34	6	22	6	27
ASE_00045	RNaseP_bact_b links to Rfam database...	0.67	0.68	0.68	54	47198	34	7	19	8	26
ASE_00046	RNaseP_bact_a links to Rfam database...	0.68	0.64	0.73	66	50313	26	3	21	2	37
ASE_00047	RNaseP_bact_a links to Rfam database...	0.58	0.56	0.61	73	74185	48	2	45	1	57
ASE_00052	RNaseP_bact_a links to Rfam database...	0.60	0.57	0.63	64	61324	43	9	28	6	48
ASE_00053	RNaseP_bact_a links to Rfam database...	0.61	0.59	0.63	78	79278	52	5	40	7	55
ASE_00057	RNaseP_bact_a links to Rfam database...	0.60	0.59	0.62	79	82088	54	8	40	6	55
ASE_00064	RNaseP_bact_a links to Rfam database...	0.38	0.39	0.38	35	45358	67	6	52	9	54
ASE_00066	RNaseP_bact_a links to Rfam database...	0.55	0.51	0.60	66	72280	46	1	43	2	64
ASE_00068	RNaseP_bact_a links to Rfam database...	0.57	0.52	0.64	44	37606	30	2	23	5	41
ASE_00069	RNaseP_bact_a links to Rfam database...	0.65	0.62	0.67	87	82899	46	5	37	4	53
ASE_00074	RNaseP_bact_a links to Rfam database...	0.53	0.51	0.55	61	67785	53	4	46	3	58
ASE_00075	RNaseP_bact_a links to Rfam database...	0.67	0.62	0.72	100	108673	51	3	35	13	62
ASE_00076	RNaseP_bact_a links to Rfam database...	0.51	0.49	0.53	58	68155	57	2	50	5	60
ASE_00077	RNaseP_bact_a links to Rfam database...	0.55	0.53	0.57	46	45069	41	4	31	6	40
ASE_00078	RNaseP_bact_a links to Rfam database...	0.66	0.61	0.71	51	42999	27	2	19	6	32
ASE_00079	RNaseP_bact_a links to Rfam database...	0.51	0.51	0.52	51	55513	49	2	45	2	49
ASE_00080	RNaseP_bact_a links to Rfam database...	0.59	0.54	0.63	67	71525	45	6	33	6	56
ASE_00081	RNaseP_bact_a links to Rfam database...	0.76	0.69	0.84	67	49690	15	4	9	2	30
ASE_00082	RNaseP_bact_a links to Rfam database...	0.79	0.70	0.90	81	70410	24	1	8	15	35
ASE_00083	RNaseP_bact_a links to Rfam database...	0.68	0.66	0.70	73	62377	38	8	23	7	37
ASE_00084	RNaseP_bact_a links to Rfam database...	0.79	0.76	0.82	75	53536	19	4	13	2	24
ASE_00087	RNaseP_bact_a links to Rfam database...	0.71	0.64	0.78	92	88292	33	4	22	7	52
ASE_00090	RNaseP_bact_a links to Rfam database...	0.67	0.67	0.66	68	55508	43	4	31	8	33
ASE_00092	RNaseP_bact_a links to Rfam database...	0.79	0.75	0.83	85	63443	26	3	15	8	28
ASE_00096	RNaseP_bact_a links to Rfam database...	0.48	0.46	0.50	53	63440	55	5	48	2	62
ASE_00099	RNaseP_bact_a links to Rfam database...	0.81	0.72	0.91	86	64525	15	0	9	6	34
ASE_00100	RNaseP_nuc links to Rfam database...	0.31	0.32	0.31	24	82137	109	5	49	55	52
ASE_00102	RNaseP_bact_a links to Rfam database...	0.57	0.50	0.64	83	117726	49	6	40	3	83
ASE_00104	RNaseP_bact_a links to Rfam database...	0.70	0.66	0.76	78	64158	29	2	23	4	41
ASE_00105	RNaseP_bact_a links to Rfam database...	0.44	0.41	0.47	45	64166	59	7	43	9	66
ASE_00107	RNaseP_bact_a links to Rfam database...	0.73	0.71	0.76	90	73035	29	1	27	1	37
ASE_00108	RNaseP_nuc links to Rfam database...	0.47	0.49	0.44	31	46901	67	5	34	28	32
ASE_00111	RNaseP_nuc links to Rfam database...	0.28	0.32	0.25	18	50015	71	21	32	18	39
ASE_00112	RNaseP_bact_a links to Rfam database...	0.78	0.74	0.83	86	75362	25	2	16	7	30
ASE_00114	RNaseP_bact_b links to Rfam database...	0.50	0.44	0.57	34	45391	40	0	26	14	43
ASE_00115	RNaseP_bact_a links to Rfam database...	0.67	0.68	0.66	69	54510	47	7	29	11	32
ASE_00116	RNaseP_arch links to Rfam database...	0.39	0.36	0.43	24	31570	35	4	28	3	42
ASE_00118	RNaseP_bact_a links to Rfam database...	0.47	0.47	0.47	48	60624	58	4	50	4	54
ASE_00119	RNaseP_bact_a links to Rfam database...	0.84	0.81	0.87	87	62735	16	2	11	3	21
ASE_00120	RNaseP_arch links to Rfam database...	0.57	0.55	0.60	52	46884	35	7	28	0	42
ASE_00121	RNaseP_arch links to Rfam database...	0.25	0.25	0.26	23	45061	68	5	61	2	69
ASE_00122	RNaseP_bact_a links to Rfam database...	0.69	0.64	0.76	56	43291	18	0	18	0	32
ASE_00123	RNaseP_bact_a links to Rfam database...	0.53	0.52	0.55	44	38423	42	2	34	6	41
ASE_00125	RNaseP_bact_a links to Rfam database...	0.68	0.64	0.73	56	39263	29	4	17	8	32
ASE_00126	RNaseP_bact_a links to Rfam database...	0.78	0.77	0.80	63	40391	23	1	15	7	19
ASE_00128	RNaseP_bact_a links to Rfam database...	0.73	0.70	0.75	70	53208	31	3	20	8	30
ASE_00129	RNaseP_bact_a links to Rfam database...	0.73	0.70	0.76	78	62733	31	2	22	7	33
ASE_00131	RNaseP_bact_a links to Rfam database...	0.61	0.59	0.63	50	39261	39	1	28	10	35
ASE_00132	RNaseP_bact_a links to Rfam database...	0.66	0.64	0.67	61	50312	32	8	22	2	34
ASE_00134	RNaseP_bact_a links to Rfam database...	0.42	0.41	0.42	39	50311	58	8	45	5	56
ASE_00135	RNaseP_bact_a links to Rfam database...	0.65	0.64	0.66	70	63084	43	1	35	7	39
ASE_00136	RNaseP_bact_a links to Rfam database...	0.80	0.76	0.84	70	48122	22	0	13	9	22
ASE_00137	RNaseP_bact_a links to Rfam database...	0.69	0.67	0.70	66	48422	33	2	26	5	32
ASE_00138	RNaseP_bact_a links to Rfam database...	0.62	0.60	0.64	49	40393	33	10	18	5	32
ASE_00139	RNaseP_bact_a links to Rfam database...	0.66	0.61	0.72	63	54197	31	1	24	6	41
ASE_00140	RNaseP_bact_a links to Rfam database...	0.67	0.64	0.71	80	70763	36	4	29	3	45
ASE_00142	RNaseP_bact_a links to Rfam database...	0.71	0.66	0.76	80	67056	31	5	20	6	42
ASE_00145	RNaseP_arch links to Rfam database...	0.55	0.54	0.57	60	70019	51	7	39	5	51
ASE_00146	RNaseP_bact_a links to Rfam database...	0.61	0.56	0.66	69	70772	39	6	29	4	55
ASE_00148	RNaseP_arch links to Rfam database...	0.69	0.66	0.73	101	112437	39	4	33	2	53
ASE_00151	RNaseP_bact_a links to Rfam database...	0.73	0.68	0.77	67	51916	27	7	13	7	31
ASE_00153	RNaseP_nuc links to Rfam database...	0.62	0.67	0.58	49	57545	73	9	27	37	24
ASE_00154	RNaseP_arch links to Rfam database...	0.58	0.57	0.59	61	65237	46	4	39	3	46
ASE_00155	RNaseP_arch links to Rfam database...	0.54	0.52	0.56	74	93395	62	10	49	3	68
ASE_00161	RNaseP_bact_b links to Rfam database...	0.34	0.34	0.34	30	53540	61	10	48	3	57
ASE_00163	RNaseP_bact_a links to Rfam database...	0.32	0.31	0.33	29	53214	69	5	53	11	64
ASE_00165	RNaseP_bact_a links to Rfam database...	0.46	0.45	0.47	45	52879	53	3	48	2	56
ASE_00168	RNaseP_nuc links to Rfam database...	0.17	0.22	0.14	14	60624	105	27	61	17	50
ASE_00169	RNaseP_bact_a links to Rfam database...	0.46	0.41	0.52	44	57206	49	4	37	8	63
ASE_00170	RNaseP_bact_a links to Rfam database...	0.71	0.69	0.74	64	48741	31	3	20	8	29
ASE_00171	RNaseP_bact_a links to Rfam database...	0.73	0.70	0.77	66	48430	22	6	14	2	28
ASE_00172	RNaseP_bact_a links to Rfam database...	0.78	0.72	0.84	76	58906	20	2	12	6	30
ASE_00174	RNaseP_bact_a links to Rfam database...	0.50	0.50	0.51	54	60970	54	8	43	3	55
ASE_00175	RNaseP_bact_a links to Rfam database...	0.67	0.61	0.73	65	59942	31	2	22	7	42
ASE_00176	RNaseP_bact_a links to Rfam database...	0.60	0.54	0.66	59	59942	36	4	26	6	51
ASE_00179	RNaseP_bact_a links to Rfam database...	0.57	0.55	0.59	46	44175	33	5	27	1	38
ASE_00180	RNaseP_bact_a links to Rfam database...	0.70	0.66	0.73	66	51270	30	8	16	6	34
ASE_00181	RNaseP_bact_a links to Rfam database...	0.71	0.65	0.78	69	57541	26	4	16	6	37
ASE_00182	RNaseP_bact_a links to Rfam database...	0.59	0.57	0.61	77	84129	53	5	44	4	59
ASE_00184	RNaseP_bact_a links to Rfam database...	0.70	0.70	0.70	71	54513	37	5	26	6	31
ASE_00185	RNaseP_bact_a links to Rfam database...	0.76	0.72	0.81	92	73422	29	1	21	7	36
ASE_00186	RNaseP_bact_a links to Rfam database...	0.70	0.68	0.72	90	78878	44	3	32	9	42
ASE_00187	RNaseP_arch links to Rfam database...	0.41	0.39	0.43	45	68531	66	7	52	7	70
ASE_00189	RNaseP_bact_b links to Rfam database...	0.66	0.65	0.67	66	63091	37	7	26	4	36
ASE_00190	RNaseP_bact_b links to Rfam database...	0.62	0.61	0.63	55	45364	35	4	28	3	35
ASE_00191	RNaseP_arch links to Rfam database...	0.53	0.51	0.56	31	29591	30	2	22	6	30
ASE_00192	RNaseP_bact_b links to Rfam database...	0.51	0.50	0.52	67	84538	67	10	51	6	66
ASE_00194	RNaseP_bact_b links to Rfam database...	0.49	0.46	0.53	55	73432	55	6	43	6	64
ASE_00196	RNaseP_arch links to Rfam database...	0.79	0.79	0.79	59	31551	23	2	14	7	16
ASE_00197	RNaseP_bact_a links to Rfam database...	0.59	0.56	0.63	81	89125	55	3	44	8	64
ASE_00198	RNaseP_bact_a links to Rfam database...	0.81	0.75	0.87	77	52561	19	3	9	7	25
ASE_00203	RNaseP_bact_a links to Rfam database...	0.76	0.71	0.82	68	46582	21	4	11	6	28
ASE_00204	RNaseP_bact_b links to Rfam database...	0.69	0.66	0.73	74	67794	36	5	23	8	38
ASE_00205	RNaseP_arch links to Rfam database...	0.62	0.62	0.62	56	45965	39	6	29	4	34
ASE_00209	RNaseP_arch links to Rfam database...	0.43	0.40	0.46	35	42995	41	6	35	0	53
ASE_00210	RNaseP_arch links to Rfam database...	0.64	0.66	0.62	43	27192	28	6	20	2	22
ASE_00212	RNaseP_bact_a links to Rfam database...	0.64	0.61	0.68	90	93828	49	5	38	6	58
ASE_00213	RNaseP_arch links to Rfam database...	0.71	0.70	0.73	46	27198	19	3	14	2	20
ASE_00214	RNaseP_bact_a links to Rfam database...	0.79	0.79	0.79	81	56178	31	4	17	10	22
ASE_00215	RNaseP_bact_a links to Rfam database...	0.60	0.58	0.63	57	48426	35	5	28	2	42
ASE_00216	RNaseP_bact_a links to Rfam database...	0.48	0.45	0.52	37	39269	35	12	22	1	45
ASE_00217	RNaseP_bact_a links to Rfam database...	0.35	0.32	0.38	29	40394	53	5	42	6	61
ASE_00221	RNaseP_bact_a links to Rfam database...	0.65	0.56	0.75	66	64532	28	0	22	6	51
ASE_00222	RNaseP_arch links to Rfam database...	0.55	0.51	0.59	80	111965	58	5	51	2	77
ASE_00227	RNaseP_bact_a links to Rfam database...	0.55	0.54	0.56	72	78875	56	7	49	0	61
ASE_00228	RNaseP_bact_a links to Rfam database...	0.57	0.55	0.59	47	46892	33	9	23	1	39
ASE_00229	RNaseP_bact_a links to Rfam database...	0.69	0.66	0.72	57	42407	29	4	18	7	30
ASE_00231	RNaseP_bact_a links to Rfam database...	0.62	0.60	0.63	58	47803	38	6	28	4	38
ASE_00232	RNaseP_bact_a links to Rfam database...	0.66	0.65	0.67	55	38421	31	8	19	4	29
ASE_00234	RNaseP_bact_a links to Rfam database...	0.59	0.55	0.63	71	75354	48	3	38	7	58
ASE_00237	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	45678	92	28	47	17	56
ASE_00238	RNaseP_bact_a links to Rfam database...	0.72	0.65	0.80	74	64168	26	2	17	7	40
ASE_00240	RNaseP_bact_a links to Rfam database...	0.63	0.60	0.66	56	46580	37	1	28	8	37
ASE_00241	RNaseP_bact_a links to Rfam database...	0.63	0.60	0.68	52	43879	32	1	24	7	35
ASE_00242	RNaseP_bact_a links to Rfam database...	0.64	0.60	0.69	67	60978	32	3	27	2	45
ASE_00245	RNaseP_nuc links to Rfam database...	0.89	0.83	0.94	65	55209	43	0	4	39	13
ASE_00246	RNaseP_nuc links to Rfam database...	0.39	0.40	0.37	27	48132	68	12	34	22	40
ASE_00247	RNaseP_nuc links to Rfam database...	0.63	0.63	0.63	40	54222	66	7	16	43	24
ASE_00248	RNaseP_bact_a links to Rfam database...	0.40	0.37	0.44	42	62386	55	4	49	2	72
ASE_00250	RNaseP_bact_a links to Rfam database...	0.62	0.59	0.66	77	78887	44	8	31	5	54
ASE_00251	RNaseP_nuc links to Rfam database...	1.00	1.00	1.00	43	17723	24	0	0	24	0
ASE_00252	RNaseP_bact_a links to Rfam database...	0.60	0.58	0.62	97	115283	69	2	58	9	71
ASE_00254	RNaseP_bact_a links to Rfam database...	0.37	0.33	0.42	27	36792	44	3	34	7	55
ASE_00255	RNaseP_bact_a links to Rfam database...	0.55	0.54	0.56	70	74565	59	5	51	3	60
ASE_00257	RNaseP_bact_a links to Rfam database...	0.66	0.63	0.70	61	50953	33	1	25	7	36
ASE_00258	RNaseP_nuc links to Rfam database...	0.80	0.85	0.75	46	26735	23	9	6	8	8
ASE_00259	RNaseP_bact_a links to Rfam database...	0.51	0.47	0.55	57	73049	52	6	41	5	64
ASE_00263	RNaseP_bact_a links to Rfam database...	0.70	0.69	0.71	83	70383	40	4	30	6	37
ASE_00264	RNaseP_nuc links to Rfam database...	0.62	0.59	0.66	59	49051	49	1	30	18	41
ASE_00267	RNaseP_bact_a links to Rfam database...	0.64	0.59	0.69	52	45075	34	4	19	11	36
ASE_00270	RNaseP_bact_a links to Rfam database...	0.80	0.79	0.82	101	72267	29	1	21	7	27
ASE_00274	RNaseP_bact_a links to Rfam database...	0.64	0.56	0.73	58	55531	25	5	17	3	45
ASE_00277	RNaseP_bact_a links to Rfam database...	0.44	0.44	0.44	40	48114	53	9	42	2	51
ASE_00279	RNaseP_bact_a links to Rfam database...	0.50	0.49	0.52	49	53206	50	6	40	4	52
ASE_00280	RNaseP_bact_a links to Rfam database...	0.50	0.47	0.53	46	51917	45	10	30	5	52
ASE_00281	RNaseP_bact_a links to Rfam database...	0.73	0.67	0.80	59	44477	22	0	15	7	29
ASE_00282	RNaseP_bact_a links to Rfam database...	0.45	0.44	0.47	56	77695	67	5	59	3	71
ASE_00283	RNaseP_bact_a links to Rfam database...	0.76	0.74	0.79	79	61676	28	4	17	7	28
ASE_00284	RNaseP_bact_a links to Rfam database...	0.68	0.67	0.70	72	58208	36	5	26	5	36
ASE_00285	RNaseP_bact_a links to Rfam database...	0.78	0.71	0.85	87	68904	26	4	11	11	35
ASE_00286	RNaseP_bact_a links to Rfam database...	0.40	0.39	0.40	36	46576	62	3	50	9	56
ASE_00287	RNaseP_bact_a links to Rfam database...	0.73	0.70	0.76	72	54851	26	3	20	3	31
ASE_00288	RNaseP_bact_a links to Rfam database...	0.30	0.29	0.30	27	45967	65	8	54	3	66
ASE_00289	RNaseP_bact_a links to Rfam database...	0.63	0.57	0.70	89	100898	43	7	31	5	68
ASE_00292	RNaseP_bact_a links to Rfam database...	0.48	0.43	0.54	60	81699	54	2	49	3	78
ASE_00294	RNaseP_bact_a links to Rfam database...	0.75	0.67	0.85	115	114345	27	2	19	6	56
ASE_00295	RNaseP_bact_a links to Rfam database...	0.61	0.60	0.62	78	73795	50	7	40	3	53
ASE_00296	RNaseP_bact_a links to Rfam database...	0.43	0.39	0.46	57	91683	70	6	60	4	88
ASE_00297	RNaseP_bact_a links to Rfam database...	0.76	0.72	0.79	71	52885	20	3	16	1	27
ASE_00298	RNaseP_bact_a links to Rfam database...	0.50	0.48	0.52	54	67424	55	2	48	5	59
ASE_00299	RNaseP_bact_a links to Rfam database...	0.53	0.54	0.53	54	49353	54	6	42	6	46
ASE_00303	RNaseP_nuc links to Rfam database...	0.61	0.63	0.59	60	67794	52	13	29	10	35
ASE_00305	RNaseP_bact_b links to Rfam database...	0.66	0.65	0.68	55	54534	36	5	21	10	30
ASE_00313	RNaseP_nuc links to Rfam database...	0.65	0.65	0.64	58	62391	51	10	22	19	31
ASE_00316	RNaseP_nuc links to Rfam database...	0.57	0.54	0.60	53	107791	73	12	24	37	45
ASE_00318	RNaseP_bact_b links to Rfam database...	0.63	0.64	0.63	75	80081	49	15	29	5	43
ASE_00321	RNaseP_bact_b links to Rfam database...	0.72	0.68	0.76	60	54536	24	4	15	5	28
ASE_00327	RNaseP_nuc links to Rfam database...	0.81	0.79	0.83	70	57207	35	4	10	21	19
ASE_00328	RNaseP_bact_b links to Rfam database...	0.68	0.66	0.70	74	72665	43	7	25	11	38
ASE_00329	RNaseP_nuc links to Rfam database...	0.63	0.70	0.57	44	40678	60	11	22	27	19
ASE_00330	RNaseP_nuc links to Rfam database...	0.65	0.69	0.62	62	56180	55	9	29	17	28
ASE_00332	RNaseP_bact_a links to Rfam database...	0.51	0.49	0.53	68	81681	65	6	55	4	70
ASE_00335	RNaseP_bact_b links to Rfam database...	0.60	0.59	0.61	69	75353	49	8	36	5	47
ASE_00337	RNaseP_nuc links to Rfam database...	0.38	0.41	0.36	29	39260	66	5	46	15	42
ASE_00338	RNaseP_nuc links to Rfam database...	0.64	0.60	0.68	59	66343	49	3	25	21	39
ASE_00339	RNaseP_bact_a links to Rfam database...	0.67	0.61	0.74	72	80103	34	1	24	9	47
ASE_00340	RNaseP_bact_a links to Rfam database...	0.72	0.72	0.72	61	45971	30	7	17	6	24
ASE_00342	RNaseP_bact_a links to Rfam database...	0.62	0.57	0.68	65	62385	34	2	29	3	50
ASE_00343	RNaseP_bact_a links to Rfam database...	0.70	0.69	0.71	78	83326	45	7	25	13	35
ASE_00346	RNaseP_arch links to Rfam database...	0.46	0.44	0.48	43	48115	54	4	43	7	54
ASE_00353	RNaseP_bact_a links to Rfam database...	0.60	0.58	0.63	62	57871	41	4	33	4	45
ASE_00359	RNaseP_arch links to Rfam database...	0.24	0.24	0.24	19	42698	61	7	54	0	61
ASE_00360	RNaseP_arch links to Rfam database...	0.32	0.31	0.33	20	29343	40	8	32	0	45
ASE_00361	RNaseP_bact_a links to Rfam database...	0.54	0.54	0.54	69	75338	62	13	46	3	58
ASE_00362	RNaseP_bact_a links to Rfam database...	0.58	0.58	0.58	53	48113	41	2	37	2	38
ASE_00363	RNaseP_bact_a links to Rfam database...	0.57	0.55	0.60	52	51273	44	2	33	9	42
ASE_00364	RNaseP_bact_a links to Rfam database...	0.73	0.70	0.76	74	54188	28	2	21	5	31
ASE_00366	RNaseP_bact_a links to Rfam database...	0.40	0.42	0.39	41	58547	67	11	54	2	57
ASE_00367	RNaseP_bact_a links to Rfam database...	0.57	0.55	0.60	47	42993	40	5	26	9	39
ASE_00369	RNaseP_bact_a links to Rfam database...	0.64	0.59	0.69	63	55854	30	1	27	2	44
ASE_00370	RNaseP_bact_a links to Rfam database...	0.73	0.70	0.77	59	41828	26	1	17	8	25
ASE_00372	RNaseP_bact_a links to Rfam database...	0.67	0.65	0.68	65	51908	37	7	23	7	35
ASE_00374	RNaseP_bact_a links to Rfam database...	0.72	0.72	0.72	63	44762	28	3	22	3	25
ASE_00375	RNaseP_bact_a links to Rfam database...	0.82	0.77	0.87	85	60280	22	1	12	9	25
ASE_00376	RNaseP_bact_a links to Rfam database...	0.65	0.65	0.65	68	56849	41	5	31	5	37
ASE_00377	RNaseP_bact_a links to Rfam database...	0.75	0.74	0.76	79	57526	35	4	21	10	28
ASE_00379	RNaseP_bact_a links to Rfam database...	0.60	0.57	0.63	51	45975	41	4	26	11	38
ASE_00380	RNaseP_bact_a links to Rfam database...	0.68	0.67	0.70	66	54852	32	6	22	4	33
ASE_00382	RNaseP_bact_a links to Rfam database...	0.69	0.67	0.71	56	41826	29	6	17	6	28
ASE_00383	RNaseP_bact_a links to Rfam database...	0.51	0.46	0.57	48	54531	43	5	31	7	57
ASE_00384	RNaseP_bact_a links to Rfam database...	0.61	0.59	0.63	54	48430	38	2	30	6	38
ASE_00385	RNaseP_bact_a links to Rfam database...	0.51	0.52	0.51	42	41822	46	13	28	5	39
ASE_00386	RNaseP_bact_a links to Rfam database...	0.54	0.54	0.54	52	50307	48	7	37	4	44
ASE_00387	RNaseP_bact_a links to Rfam database...	0.68	0.65	0.72	68	55850	33	1	26	6	36
ASE_00388	RNaseP_bact_a links to Rfam database...	0.63	0.58	0.68	52	45676	37	1	24	12	37
ASE_00390	RNaseP_bact_a links to Rfam database...	0.61	0.60	0.63	51	42114	41	0	30	11	34
ASE_00393	RNaseP_bact_a links to Rfam database...	0.47	0.42	0.53	39	47821	43	2	33	8	54
ASE_00394	RNaseP_bact_a links to Rfam database...	0.80	0.77	0.82	72	46883	20	3	13	4	21
ASE_00395	RNaseP_bact_a links to Rfam database...	0.70	0.65	0.74	55	41542	30	1	18	11	29
ASE_00396	RNaseP_bact_a links to Rfam database...	0.54	0.52	0.57	43	41540	38	2	31	5	40
ASE_00397	RNaseP_bact_a links to Rfam database...	0.59	0.58	0.61	61	54515	47	6	33	8	44
ASE_00398	RNaseP_bact_a links to Rfam database...	0.61	0.56	0.66	58	55857	39	1	29	9	46
ASE_00400	RNaseP_bact_a links to Rfam database...	0.66	0.64	0.68	68	57870	38	1	31	6	38
ASE_00401	RNaseP_bact_a links to Rfam database...	0.64	0.63	0.65	80	76904	46	6	38	2	46
ASE_00402	RNaseP_bact_a links to Rfam database...	0.73	0.67	0.79	57	42414	18	2	13	3	28
ASE_00403	RNaseP_bact_a links to Rfam database...	0.45	0.42	0.47	45	55850	57	5	45	7	62
ASE_00404	RNaseP_bact_a links to Rfam database...	0.53	0.52	0.54	44	42990	46	6	31	9	41
ASE_00406	RNaseP_bact_a links to Rfam database...	0.80	0.77	0.83	72	48741	26	3	12	11	22
ASE_00411	RNaseP_bact_a links to Rfam database...	0.46	0.46	0.47	41	49367	54	6	41	7	48
ASE_00412	RNaseP_bact_a links to Rfam database...	0.49	0.48	0.52	50	58214	51	8	39	4	55
ASE_00413	RNaseP_bact_a links to Rfam database...	0.64	0.67	0.62	54	44464	34	11	22	1	27
ASE_00414	RNaseP_bact_a links to Rfam database...	0.47	0.45	0.49	43	46273	51	2	42	7	52
ASE_00415	RNaseP_bact_a links to Rfam database...	0.68	0.66	0.69	68	54848	33	5	25	3	35
ASE_00416	RNaseP_bact_a links to Rfam database...	0.70	0.67	0.73	85	77305	41	2	29	10	42
ASE_00417	RNaseP_arch links to Rfam database...	0.36	0.37	0.35	37	54509	72	11	58	3	63
ASE_00418	RNaseP_arch links to Rfam database...	0.19	0.20	0.19	15	38700	70	8	58	4	60
ASE_00419	RNaseP_bact_a links to Rfam database...	0.84	0.81	0.88	83	54852	14	3	8	3	20
ASE_00420	RNaseP_nuc links to Rfam database...	0.79	0.81	0.77	51	43299	44	6	9	29	12
ASE_00422	RNaseP_bact_a links to Rfam database...	0.79	0.77	0.81	72	46882	24	3	14	7	22
ASE_00423	RNaseP_bact_a links to Rfam database...	0.61	0.61	0.60	67	56841	46	10	35	1	42
ASE_00426	RNaseP_bact_a links to Rfam database...	0.44	0.42	0.47	45	60979	51	3	48	0	63
ASE_00427	RNaseP_nuc links to Rfam database...	0.13	0.17	0.10	8	40677	84	26	44	14	38
ASE_00428	RNaseP_bact_a links to Rfam database...	0.78	0.75	0.82	94	76521	29	4	17	8	31
ASE_00430	RNaseP_bact_a links to Rfam database...	0.77	0.74	0.81	72	46882	24	3	14	7	25
ASE_00431	RNaseP_bact_a links to Rfam database...	0.64	0.58	0.71	55	46282	32	2	21	9	40
ASE_00434	RNaseP_bact_b links to Rfam database...	0.62	0.61	0.64	67	68160	49	5	33	11	43
ASE_00437	RNaseP_bact_a links to Rfam database...	0.43	0.41	0.47	55	79283	69	1	62	6	80
ASE_00438	RNaseP_bact_a links to Rfam database...	0.48	0.45	0.53	52	65967	47	3	44	0	64
ASE_00441	RNaseP_bact_a links to Rfam database...	0.78	0.74	0.82	83	64160	27	2	16	9	29
ASE_00443	RNaseP_nuc links to Rfam database...	0.98	0.98	0.98	49	26746	33	0	1	32	1
ASE_00447	RNaseP_bact_a links to Rfam database...	0.77	0.72	0.82	84	60275	24	2	17	5	32
ASE_00448	RNaseP_bact_a links to Rfam database...	0.22	0.23	0.22	26	64143	99	8	84	7	86
ASE_00451	RNaseP_bact_a links to Rfam database...	0.62	0.60	0.65	75	70760	48	3	38	7	50
ASE_00454	RNaseP_nuc links to Rfam database...	0.56	0.56	0.57	35	43304	54	1	25	28	28
CRW_00013	Intron_gpI links to Rfam database...	0.39	0.37	0.42	43	103637	84	9	51	24	72
CRW_00016	Intron_gpI links to Rfam database...	0.48	0.45	0.50	54	77314	68	6	47	15	66
CRW_00024	SSU_rRNA_archaea links to Rfam database...	0.69	0.68	0.70	312	1085154	184	22	113	49	146
CRW_00048	SSU_rRNA_bacteria links to Rfam database...	0.48	0.46	0.51	215	1170796	225	31	173	21	255
CRW_00054	SSU_rRNA_bacteria links to Rfam database...	0.42	0.41	0.43	186	1107383	267	27	220	20	270
CRW_00059	SSU_rRNA_bacteria links to Rfam database...	0.50	0.48	0.52	225	1172311	230	27	183	20	248
CRW_00061	SSU_rRNA_bacteria links to Rfam database...	0.43	0.42	0.44	201	1181493	284	39	220	25	275
CRW_00068	SSU_rRNA_bacteria links to Rfam database...	0.45	0.43	0.47	198	1108880	243	33	194	16	259
CRW_00096	SSU_rRNA_bacteria links to Rfam database...	0.49	0.48	0.50	222	1178435	246	25	198	23	243
CRW_00140	SSU_rRNA_bacteria links to Rfam database...	0.41	0.40	0.41	185	1135829	286	31	233	22	278
CRW_00141	SSU_rRNA_bacteria links to Rfam database...	0.54	0.52	0.55	248	1201576	229	30	171	28	228
CRW_00150	SSU_rRNA_bacteria links to Rfam database...	0.44	0.42	0.45	198	1152481	263	27	215	21	268
CRW_00152	SSU_rRNA_bacteria links to Rfam database...	0.58	0.56	0.60	265	1179971	202	39	141	22	206
CRW_00166	SSU_rRNA_bacteria links to Rfam database...	0.42	0.41	0.44	190	1190764	263	30	212	21	278
CRW_00173	SSU_rRNA_bacteria links to Rfam database...	0.27	0.26	0.27	115	1082237	320	30	274	16	330
CRW_00177	SSU_rRNA_bacteria links to Rfam database...	0.48	0.46	0.51	219	1178447	241	25	189	27	254
CRW_00196	SSU_rRNA_bacteria links to Rfam database...	0.49	0.48	0.50	229	1207778	250	33	195	22	246
CRW_00230	SSU_rRNA_bacteria links to Rfam database...	0.56	0.53	0.59	255	1198497	206	24	150	32	223
CRW_00245	SSU_rRNA_bacteria links to Rfam database...	0.40	0.40	0.41	179	1105891	278	32	226	20	274
CRW_00248	SSU_rRNA_bacteria links to Rfam database...	0.52	0.52	0.53	250	1218666	257	31	194	32	234
CRW_00250	SSU_rRNA_bacteria links to Rfam database...	0.50	0.50	0.50	238	1198447	265	46	195	24	240
CRW_00256	SSU_rRNA_bacteria links to Rfam database...	0.40	0.40	0.41	185	1192284	296	39	232	25	283
CRW_00270	SSU_rRNA_bacteria links to Rfam database...	0.53	0.53	0.54	241	1111840	228	28	177	23	214
CRW_00271	SSU_rRNA_bacteria links to Rfam database...	0.35	0.33	0.36	154	1122325	292	38	234	20	308
CRW_00273	SSU_rRNA_bacteria links to Rfam database...	0.43	0.41	0.45	183	1085197	235	32	189	14	263
CRW_00275	SSU_rRNA_bacteria links to Rfam database...	0.60	0.58	0.61	266	1114835	193	26	144	23	191
CRW_00277	SSU_rRNA_bacteria links to Rfam database...	0.36	0.35	0.37	157	1110374	282	40	224	18	296
CRW_00280	SSU_rRNA_bacteria links to Rfam database...	0.36	0.35	0.38	158	1117841	277	40	221	16	295
CRW_00281	SSU_rRNA_bacteria links to Rfam database...	0.58	0.56	0.59	260	1144904	208	25	152	31	204
CRW_00283	SSU_rRNA_bacteria links to Rfam database...	0.37	0.38	0.37	162	1015591	302	49	223	30	270
CRW_00289	SSU_rRNA_bacteria links to Rfam database...	0.49	0.48	0.50	228	1189195	264	43	187	34	248
CRW_00292	SSU_rRNA_bacteria links to Rfam database...	0.35	0.34	0.36	157	1123815	302	48	230	24	304
CRW_00306	SSU_rRNA_eukarya links to Rfam database...	0.18	0.19	0.18	86	1445359	473	69	336	68	376
CRW_00366	SSU_rRNA_eukarya links to Rfam database...	0.26	0.27	0.25	130	1579227	438	85	311	42	352
CRW_00371	SSU_rRNA_eukarya links to Rfam database...	0.39	0.39	0.40	191	1611430	345	53	236	56	305
CRW_00379	SSU_rRNA_eukarya links to Rfam database...	0.42	0.43	0.41	229	2126396	414	75	253	86	305
CRW_00411	SSU_rRNA_eukarya links to Rfam database...	0.34	0.35	0.33	172	1614983	394	81	267	46	324
CRW_00414	SSU_rRNA_eukarya links to Rfam database...	0.29	0.30	0.29	149	1665709	429	66	301	62	346
CRW_00466	SSU_rRNA_bacteria links to Rfam database...	0.60	0.59	0.60	272	1116312	211	33	148	30	186
CRW_00589	SSU_rRNA_bacteria links to Rfam database...	0.31	0.30	0.32	135	1094033	316	46	246	24	310
CRW_00590	SSU_rRNA_bacteria links to Rfam database...	0.41	0.39	0.43	176	1119350	259	29	201	29	276
CRW_00591	SSU_rRNA_bacteria links to Rfam database...	0.44	0.44	0.44	198	1098453	275	46	206	23	248
CRW_00610	Intron_gpI links to Rfam database...	0.44	0.44	0.43	36	36232	49	8	39	2	45
CRW_00613	Intron_gpI links to Rfam database...	0.84	0.82	0.86	64	34906	18	0	10	8	14
CRW_00614	Intron_gpI links to Rfam database...	0.14	0.16	0.12	9	121698	120	17	47	56	48
CRW_00618	Intron_gpI links to Rfam database...	0.18	0.20	0.16	12	56207	83	15	46	22	49
CRW_00619	Intron_gpI links to Rfam database...	0.35	0.37	0.33	27	164943	151	8	47	96	46
CRW_00620	Intron_gpI links to Rfam database...	0.18	0.21	0.15	13	150891	156	19	52	85	50
CRW_00621	Intron_gpI links to Rfam database...	0.35	0.34	0.36	24	153114	139	8	35	96	47
CRW_00623	Intron_gpI links to Rfam database...	0.31	0.29	0.32	24	129721	122	7	43	72	59
CRW_00633	Intron_gpI links to Rfam database...	0.62	0.59	0.65	63	63449	38	9	25	4	43
CRW_00634	Intron_gpI links to Rfam database...	0.50	0.49	0.52	46	64531	48	10	33	5	48
CRW_00670	Intron_gpI links to Rfam database...	0.57	0.58	0.56	70	70001	57	11	43	3	50
CRW_00671	Intron_gpI links to Rfam database...	0.79	0.77	0.80	90	62723	28	6	16	6	27
CRW_00672	Intron_gpI links to Rfam database...	0.76	0.78	0.74	87	72272	41	10	21	10	24
CRW_00674	Intron_gpI links to Rfam database...	0.68	0.67	0.70	83	83317	41	8	28	5	41
CRW_00676	Intron_gpI links to Rfam database...	0.59	0.58	0.60	67	93416	63	8	37	18	48
CRW_00692	Intron_gpI links to Rfam database...	0.33	0.34	0.32	31	68537	84	18	49	17	59
CRW_00759	SSU_rRNA_eukarya links to Rfam database...	0.31	0.31	0.30	151	1636639	423	69	286	68	330
CRW_00763	SSU_rRNA_bacteria links to Rfam database...	0.20	0.20	0.20	90	1215575	395	47	308	40	356
CRW_00778	SSU_rRNA_bacteria links to Rfam database...	0.29	0.29	0.28	112	1201627	335	46	240	49	272
CRW_00789	SSU_rRNA_bacteria links to Rfam database...	0.36	0.36	0.37	163	1137340	312	43	240	29	284
CRW_00795	SSU_rRNA_bacteria links to Rfam database...	0.34	0.34	0.33	135	1152513	326	45	228	53	259
CRW_00849	SSU_rRNA_bacteria links to Rfam database...	0.57	0.56	0.58	263	1117810	226	18	169	39	207
CRW_00997	SSU_rRNA_bacteria links to Rfam database...	0.44	0.42	0.46	197	1135851	249	39	191	19	267
CRW_01153	SSU_rRNA_eukarya links to Rfam database...	0.29	0.30	0.28	150	1605991	434	63	324	47	353
CRW_01171	SSU_rRNA_eukarya links to Rfam database...	0.33	0.33	0.33	168	1593497	395	62	278	55	338
CRW_01343	SSU_rRNA_archaea links to Rfam database...	0.37	0.36	0.38	158	977480	279	40	223	16	276
PDB_00005	Tymo_tRNA-like links to Rfam database...	0.78	0.79	0.79	11	932	3	0	3	0	3
PDB_00012	mir-TAR links to Rfam database...	1.00	1.00	1.00	7	399	4	0	0	4	0
PDB_00213	Gammaretro_CES links to Rfam database...	0.94	0.88	1.00	36	5014	0	0	0	0	5
PDB_00553	mir-TAR links to Rfam database...	1.00	1.00	1.00	11	454	1	0	0	1	0
PDB_00703	SSU_rRNA_bacteria links to Rfam database...	0.56	0.51	0.61	253	1073430	187	22	140	25	242
PDB_00716	HDV_ribozyme links to Rfam database...	-0.01	0.00	0.00	0	2680	22	0	21	1	23
PDB_00741	Entero_5_CRE links to Rfam database...	0.87	0.76	1.00	13	690	0	0	0	0	4
PDB_00810	s2m links to Rfam database...	0.76	0.59	1.00	10	1071	0	0	0	0	7
PDB_00827	Intron_gpI links to Rfam database...	0.76	0.67	0.86	54	26965	11	1	8	2	27
PDB_00828	Purine links to Rfam database...	0.86	0.78	0.95	21	2463	1	0	1	0	6
PDB_00829	Purine links to Rfam database...	0.86	0.75	1.00	18	2260	0	0	0	0	6
PDB_00854	SSU_rRNA_bacteria links to Rfam database...	0.56	0.54	0.58	288	1500280	260	33	177	50	247
PDB_00876	HIV_FE links to Rfam database...	0.97	0.95	1.00	19	971	0	0	0	0	1
PDB_00919	RNaseP_bact_a links to Rfam database...	0.52	0.48	0.57	49	44167	39	5	32	2	54
PDB_01001	tRNA links to Rfam database...	0.52	0.56	0.50	10	2125	10	3	7	0	8
PDB_01020	Purine links to Rfam database...	0.86	0.74	1.00	17	2261	1	0	0	1	6
PDB_01050	UnaL2 links to Rfam database...	0.88	0.85	0.92	11	618	3	0	1	2	2
PDB_01051	Telomerase-cil links to Rfam database...	0.88	0.85	0.92	11	891	5	0	1	4	2
PDB_01073	SAM links to Rfam database...	0.86	0.74	1.00	25	4346	1	0	0	1	9
PDB_01088	SSU_rRNA_bacteria links to Rfam database...	0.33	0.32	0.34	175	1470956	367	49	290	28	372
PDB_01092	glmS links to Rfam database...	0.73	0.63	0.85	33	10114	8	1	5	2	19
PDB_01103	SSU_rRNA_bacteria links to Rfam database...	0.61	0.58	0.64	324	1606022	220	26	156	38	238
PDB_01105	SSU_rRNA_bacteria links to Rfam database...	0.57	0.53	0.62	286	1433506	213	32	147	34	254
PDB_01114	TPP links to Rfam database...	0.50	0.41	0.61	11	2832	7	0	7	0	16
PDB_01120	SSU_rRNA_bacteria links to Rfam database...	0.43	0.40	0.47	211	1204677	265	29	211	25	316
PDB_01152	HIV_FS2 links to Rfam database...	0.88	0.79	1.00	11	550	0	0	0	0	3
PDB_01236	ykoK links to Rfam database...	0.74	0.70	0.78	38	11579	14	0	11	3	16
PDB_01273	SSU_rRNA_bacteria links to Rfam database...	0.43	0.41	0.45	200	1117813	276	33	214	29	291
RFA_00389	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	3	0	0	3	0
RFA_00390	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	3	0	0	3	0
RFA_00391	Hammerhead_3 links to Rfam database...	0.93	0.87	1.00	13	1418	2	0	0	2	2
RFA_00396	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	2	0	0	2	1
RFA_00402	Hammerhead_3 links to Rfam database...	0.33	0.33	0.33	5	1416	11	0	10	1	10
RFA_00409	Hammerhead_3 links to Rfam database...	0.67	0.60	0.75	9	1419	5	1	2	2	6
RFA_00416	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1470	3	0	0	3	0
RFA_00425	Hammerhead_3 links to Rfam database...	0.93	0.87	1.00	13	1640	4	0	0	4	2
RFA_00427	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1471	2	0	0	2	1
RFA_00433	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	3	0	0	3	0
RFA_00434	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00436	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00440	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1470	3	0	0	3	0
RFA_00442	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	3	0	0	3	0
RFA_00444	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1525	2	0	0	2	0
RFA_00446	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1471	2	0	0	2	1
RFA_00449	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1471	2	0	0	2	1
RFA_00582	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	5980	21	0	0	21	0
RFA_00583	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4935	14	0	0	14	0
RFA_00584	Y_RNA links to Rfam database...	0.87	0.87	0.87	13	2911	14	0	2	12	2
RFA_00585	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4836	14	0	0	14	0
RFA_00586	Y_RNA links to Rfam database...	0.97	0.93	1.00	14	3902	16	0	0	16	1
RFA_00587	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4836	12	0	0	12	0
RFA_00588	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4545	16	0	0	16	0
RFA_00589	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4356	15	0	0	15	0
RFA_00594	Y_RNA links to Rfam database...	0.90	0.87	0.93	13	2761	10	0	1	9	2
RFA_00596	Y_RNA links to Rfam database...	0.00	0.00	0.00	0	5976	32	5	14	13	15
RFA_00597	Telomerase-vert links to Rfam database...	0.24	0.26	0.23	28	97782	111	22	71	18	81
RFA_00598	Telomerase-vert links to Rfam database...	0.62	0.58	0.66	59	84577	56	4	26	26	42
RFA_00599	Telomerase-vert links to Rfam database...	0.73	0.72	0.73	80	101366	58	10	19	29	31
RFA_00600	Telomerase-vert links to Rfam database...	0.62	0.70	0.55	70	120168	100	31	26	43	30
RFA_00601	Telomerase-vert links to Rfam database...	0.49	0.51	0.46	58	99110	84	27	40	17	56
RFA_00602	Telomerase-vert links to Rfam database...	0.66	0.68	0.65	79	101353	63	21	22	20	37
RFA_00603	Telomerase-cil links to Rfam database...	0.67	0.74	0.60	26	13487	22	4	13	5	9
RFA_00604	Telomerase-cil links to Rfam database...	0.71	0.74	0.68	26	13492	23	2	10	11	9
RFA_00605	Telomerase-cil links to Rfam database...	0.30	0.34	0.27	12	15180	46	3	30	13	23
RFA_00606	Telomerase-cil links to Rfam database...	0.60	0.62	0.59	24	21280	33	7	10	16	15
RFA_00607	Telomerase-cil links to Rfam database...	0.83	0.83	0.83	30	17730	17	4	2	11	6
RFA_00609	Telomerase-cil links to Rfam database...	0.53	0.59	0.47	22	17908	35	6	19	10	15
RFA_00610	Telomerase-cil links to Rfam database...	0.88	0.86	0.89	32	17169	12	0	4	8	5
RFA_00611	Telomerase-cil links to Rfam database...	0.80	0.80	0.80	28	13006	18	3	4	11	7
RFA_00613	Telomerase-cil links to Rfam database...	0.71	0.69	0.73	24	12847	17	4	5	8	11
RFA_00615	Telomerase-cil links to Rfam database...	0.62	0.69	0.56	24	13323	21	8	11	2	11
RFA_00620	Telomerase-cil links to Rfam database...	0.43	0.49	0.38	19	21895	44	8	23	13	20
RFA_00621	RNase_MRP links to Rfam database...	0.40	0.41	0.40	31	46282	64	1	46	17	45
RFA_00623	RNase_MRP links to Rfam database...	0.39	0.42	0.35	33	43863	73	4	56	13	45
RFA_00624	RNase_MRP links to Rfam database...	0.43	0.48	0.39	29	30060	53	9	37	7	32
RFA_00626	rne5 links to Rfam database...	0.86	0.80	0.91	70	56539	32	1	6	25	17
RFA_00627	rne5 links to Rfam database...	0.69	0.69	0.68	60	56865	47	6	22	19	27
RFA_00628	rne5 links to Rfam database...	0.90	0.88	0.93	76	57209	31	1	5	25	10
RFA_00630	rne5 links to Rfam database...	0.69	0.66	0.72	57	56874	41	4	18	19	30
RFA_00632	HDV_ribozyme links to Rfam database...	0.40	0.39	0.41	11	4068	16	0	16	0	17
RFA_00636	HDV_ribozyme links to Rfam database...	0.44	0.46	0.43	13	3975	17	0	17	0	15
RFA_00639	7SK links to Rfam database...	0.57	0.57	0.57	50	54528	49	8	29	12	37
RFA_00642	Vimentin3 links to Rfam database...	0.39	0.33	0.46	6	2913	7	2	5	0	12
RFA_00643	Vimentin3 links to Rfam database...	0.30	0.28	0.33	5	2196	11	2	8	1	13
RFA_00644	Vimentin3 links to Rfam database...	-0.01	0.00	0.00	0	2685	16	5	11	0	18
RFA_00645	Vimentin3 links to Rfam database...	-0.01	0.00	0.00	0	2404	11	2	9	0	18
RFA_00649	Vimentin3 links to Rfam database...	0.75	0.78	0.74	14	2126	8	1	4	3	4
RFA_00651	Vimentin3 links to Rfam database...	0.25	0.22	0.29	4	2066	12	0	10	2	14
RFA_00653	Vimentin3 links to Rfam database...	0.34	0.33	0.35	6	2128	11	2	9	0	12
RFA_00654	Vimentin3 links to Rfam database...	0.23	0.22	0.25	4	2399	12	2	10	0	14
RFA_00658	Hammerhead_1 links to Rfam database...	0.59	0.50	0.70	7	1118	5	0	3	2	7
RFA_00659	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	1122	8	0	6	2	14
RFA_00664	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	980	11	0	10	1	14
RFA_00667	Hammerhead_1 links to Rfam database...	0.30	0.29	0.33	4	978	8	1	7	0	10
RFA_00668	Hammerhead_1 links to Rfam database...	0.41	0.43	0.40	6	975	9	0	9	0	8
RFA_00672	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	895	9	0	8	1	13
RFA_00673	Hammerhead_1 links to Rfam database...	0.44	0.36	0.56	5	1119	5	0	4	1	9
RFA_00674	Hammerhead_1 links to Rfam database...	0.42	0.36	0.50	5	1118	5	0	5	0	9
RFA_00675	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	980	11	0	10	1	14
RFA_00677	Hammerhead_1 links to Rfam database...	0.46	0.43	0.50	6	978	7	0	6	1	8
RFA_00678	Hammerhead_1 links to Rfam database...	0.37	0.29	0.50	4	938	4	0	4	0	10
RFA_00680	Hammerhead_1 links to Rfam database...	0.74	0.71	0.77	10	1115	7	0	3	4	4
RFA_00684	Hammerhead_1 links to Rfam database...	0.66	0.64	0.69	9	977	6	0	4	2	5
RFA_00685	Hammerhead_1 links to Rfam database...	0.42	0.36	0.50	5	980	6	0	5	1	9
RFA_00695	Hammerhead_1 links to Rfam database...	0.64	0.64	0.64	9	7007	24	1	4	19	5
RFA_00703	Hammerhead_1 links to Rfam database...	0.64	0.64	0.64	9	4264	17	1	4	12	5
RFA_00704	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	988	3	0	2	1	14
RFA_00705	Hammerhead_1 links to Rfam database...	0.69	0.71	0.67	10	1020	5	0	5	0	4
RFA_00706	Hammerhead_1 links to Rfam database...	0.25	0.21	0.30	3	1025	7	0	7	0	11
RFA_00707	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	1027	8	0	8	0	14
RFA_00708	Hammerhead_1 links to Rfam database...	0.33	0.29	0.40	4	1025	6	0	6	0	10
RFA_00709	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	982	8	0	8	0	14
RFA_00710	Hammerhead_1 links to Rfam database...	0.07	0.07	0.10	1	980	9	0	9	0	13
RFA_00711	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	1023	12	0	12	0	14
RFA_00715	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	933	13	0	13	0	14
RFA_00716	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	936	10	0	10	0	14
RFA_00717	Hammerhead_1 links to Rfam database...	0.64	0.64	0.64	9	889	5	0	5	0	5
RFA_00730	s2m links to Rfam database...	0.69	0.67	0.73	8	892	4	1	2	1	4
RFA_00731	s2m links to Rfam database...	0.81	0.67	1.00	8	895	1	0	0	1	4
RFA_00733	s2m links to Rfam database...	0.81	0.67	1.00	8	895	1	0	0	1	4
RFA_00734	s2m links to Rfam database...	0.73	0.67	0.80	8	893	3	0	2	1	4
RFA_00736	s2m links to Rfam database...	0.81	0.67	1.00	8	895	1	0	0	1	4
RFA_00737	s2m links to Rfam database...	0.81	0.67	1.00	8	895	1	0	0	1	4
RFA_00745	s2m links to Rfam database...	0.81	0.67	1.00	8	938	1	0	0	1	4
RFA_00749	s2m links to Rfam database...	0.81	0.67	1.00	8	895	1	0	0	1	4
RFA_00758	s2m links to Rfam database...	0.76	0.58	1.00	7	896	0	0	0	0	5
RFA_00762	s2m links to Rfam database...	0.64	0.67	0.62	8	890	5	1	4	0	4
RFA_00763	s2m links to Rfam database...	0.81	0.67	1.00	8	895	1	0	0	1	4
RFA_00764	s2m links to Rfam database...	0.81	0.67	1.00	8	895	1	0	0	1	4
RFA_00765	s2m links to Rfam database...	0.81	0.67	1.00	8	895	1	0	0	1	4
RFA_00767	Corona_pk3 links to Rfam database...	0.63	0.56	0.71	10	1877	4	0	4	0	8
RFA_00768	Corona_pk3 links to Rfam database...	0.44	0.44	0.44	8	1873	11	1	9	1	10
RFA_00769	Corona_pk3 links to Rfam database...	0.54	0.56	0.53	10	1934	9	4	5	0	8
RFA_00770	Corona_pk3 links to Rfam database...	0.59	0.56	0.63	10	2000	9	0	6	3	8
RFA_00773	Corona_pk3 links to Rfam database...	0.55	0.56	0.56	10	1935	8	3	5	0	8
RFA_00779	Corona_pk3 links to Rfam database...	0.63	0.56	0.71	10	1939	4	3	1	0	8
RFA_00781	Gammaretro_CES links to Rfam database...	0.73	0.75	0.71	24	5016	11	2	8	1	8
RFA_00786	Gammaretro_CES links to Rfam database...	0.64	0.66	0.64	21	5017	12	2	10	0	11
RFA_00791	Gammaretro_CES links to Rfam database...	0.86	0.84	0.87	27	5120	6	2	2	2	5
RFA_00792	Gammaretro_CES links to Rfam database...	0.95	0.94	0.97	30	5019	3	0	1	2	2
RFA_00801	Gammaretro_CES links to Rfam database...	0.76	0.78	0.74	25	5016	11	2	7	2	7
RFA_00805	RNAIII links to Rfam database...	0.73	0.72	0.73	108	133239	49	5	34	10	42
RFA_00808	RydC links to Rfam database...	0.65	0.56	0.75	9	2004	3	0	3	0	7
RFA_00809	RydC links to Rfam database...	0.35	0.38	0.33	6	2127	12	1	11	0	10
RFA_00814	R2_retro_el links to Rfam database...	0.32	0.37	0.28	15	25146	45	8	31	6	26
RFA_00815	R2_retro_el links to Rfam database...	0.57	0.61	0.54	25	24485	35	5	16	14	16
RFA_00816	R2_retro_el links to Rfam database...	0.80	0.88	0.73	36	23171	20	9	4	7	5
RFA_00817	R2_retro_el links to Rfam database...	0.10	0.12	0.08	5	21883	57	18	39	0	36
RFA_00818	R2_retro_el links to Rfam database...	0.48	0.54	0.43	22	20250	38	13	16	9	19
RFA_00819	R2_retro_el links to Rfam database...	0.96	0.95	0.98	39	27926	34	0	1	33	2
RFA_00820	bicoid_3 links to Rfam database...	0.83	0.83	0.82	133	151363	45	7	22	16	27
RFA_00830	bicoid_3 links to Rfam database...	0.48	0.45	0.51	70	152491	110	5	62	43	84
SPR_00020	tRNA links to Rfam database...	0.76	0.80	0.73	16	2679	9	2	4	3	4
SPR_00023	tRNA links to Rfam database...	0.50	0.52	0.48	11	2827	12	3	9	0	10
SPR_00137	tRNA links to Rfam database...	0.77	0.86	0.69	18	2900	14	4	4	6	3
SPR_00273	tRNA links to Rfam database...	0.29	0.33	0.27	7	2824	20	2	17	1	14
SPR_00277	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	1	0	0	1	0
SPR_00394	tRNA links to Rfam database...	0.50	0.52	0.48	11	3632	17	6	6	5	10
SPR_00402	tRNA links to Rfam database...	0.76	0.76	0.76	16	2535	9	0	5	4	5
SPR_00721	tRNA links to Rfam database...	0.93	0.90	0.95	19	2906	5	0	1	4	2
SPR_00816	tRNA links to Rfam database...	0.32	0.35	0.29	7	3462	20	5	12	3	13
SPR_01157	tRNA links to Rfam database...	0.81	0.81	0.81	17	2754	6	0	4	2	4
SRP_00001	Bacteria_large_SRP links to Rfam database...	0.87	0.88	0.88	35	6746	6	1	4	1	5
SRP_00002	Metazoa_SRP links to Rfam database...	0.90	0.91	0.89	93	45045	15	4	8	3	9
SRP_00006	Metazoa_SRP links to Rfam database...	0.87	0.86	0.87	87	45653	16	1	12	3	14
SRP_00008	Bacteria_small_SRP links to Rfam database...	0.60	0.60	0.60	15	2901	11	0	10	1	10
SRP_00009	Plant_SRP links to Rfam database...	0.47	0.45	0.50	46	46573	46	6	40	0	56
SRP_00011	Plant_SRP links to Rfam database...	0.58	0.56	0.61	58	46265	39	2	35	2	46
SRP_00012	Plant_SRP links to Rfam database...	0.64	0.60	0.69	61	46271	29	1	27	1	40
SRP_00015	Plant_SRP links to Rfam database...	0.83	0.81	0.86	80	46267	23	0	13	10	19
SRP_00016	Archaea_SRP links to Rfam database...	0.79	0.78	0.80	85	47789	22	5	16	1	24
SRP_00018	Fungi_SRP links to Rfam database...	0.56	0.57	0.56	46	38421	46	7	29	10	35
SRP_00019	Fungi_SRP links to Rfam database...	0.90	0.89	0.91	81	35957	15	4	4	7	10
SRP_00020	Bacteria_small_SRP links to Rfam database...	0.86	0.88	0.85	29	5531	6	1	4	1	4
SRP_00024	Bacteria_large_SRP links to Rfam database...	0.38	0.39	0.37	34	37582	59	8	51	0	53
SRP_00026	Bacteria_large_SRP links to Rfam database...	0.68	0.69	0.66	61	36764	37	3	28	6	27
SRP_00027	Bacteria_large_SRP links to Rfam database...	0.77	0.76	0.78	66	37043	24	0	19	5	21
SRP_00030	Bacteria_large_SRP links to Rfam database...	0.80	0.82	0.79	72	36765	24	3	16	5	16
SRP_00031	Bacteria_large_SRP links to Rfam database...	0.72	0.73	0.71	65	36224	31	4	22	5	24
SRP_00037	Bacteria_large_SRP links to Rfam database...	0.44	0.45	0.44	39	36496	51	9	41	1	48
SRP_00038	Bacteria_small_SRP links to Rfam database...	0.19	0.18	0.21	6	5021	23	2	21	0	27
SRP_00040	Bacteria_small_SRP links to Rfam database...	0.70	0.74	0.66	23	5530	14	1	11	2	8
SRP_00042	Bacteria_small_SRP links to Rfam database...	0.45	0.48	0.43	12	3977	18	0	16	2	13
SRP_00043	Bacteria_small_SRP links to Rfam database...	0.44	0.48	0.41	14	5016	23	4	16	3	15
SRP_00044	Bacteria_small_SRP links to Rfam database...	0.89	0.88	0.90	28	6074	4	1	2	1	4
SRP_00046	Bacteria_small_SRP links to Rfam database...	0.97	0.97	0.97	31	4721	2	0	1	1	1
SRP_00050	Metazoa_SRP links to Rfam database...	0.95	0.93	0.98	92	44756	7	0	2	5	7
SRP_00051	Bacteria_small_SRP links to Rfam database...	0.30	0.30	0.31	9	5431	22	2	18	2	21
SRP_00053	Metazoa_SRP links to Rfam database...	0.89	0.87	0.91	82	45060	18	0	8	10	12
SRP_00054	Bacteria_small_SRP links to Rfam database...	0.22	0.22	0.23	7	5534	24	3	21	0	25
SRP_00056	Bacteria_small_SRP links to Rfam database...	0.81	0.81	0.81	30	6404	8	1	6	1	7
SRP_00057	Bacteria_small_SRP links to Rfam database...	0.73	0.74	0.72	26	6292	12	1	9	2	9
SRP_00058	Bacteria_small_SRP links to Rfam database...	0.90	0.91	0.89	31	5743	6	1	3	2	3
SRP_00060	Metazoa_SRP links to Rfam database...	0.88	0.86	0.91	86	44456	17	0	9	8	14
SRP_00061	Metazoa_SRP links to Rfam database...	0.92	0.92	0.93	92	44751	17	0	7	10	8
SRP_00066	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	45353	98	11	87	0	100
SRP_00067	Bacteria_small_SRP links to Rfam database...	0.68	0.66	0.71	25	5743	10	1	9	0	13
SRP_00069	Fungi_SRP links to Rfam database...	0.72	0.74	0.69	63	34362	31	4	24	3	22
SRP_00070	Fungi_SRP links to Rfam database...	0.28	0.32	0.24	39	126592	133	37	88	8	82
SRP_00072	Bacteria_small_SRP links to Rfam database...	0.30	0.31	0.30	9	6298	27	1	20	6	20
SRP_00073	Fungi_SRP links to Rfam database...	0.64	0.66	0.62	47	38984	42	8	21	13	24
SRP_00074	Bacteria_small_SRP links to Rfam database...	0.16	0.17	0.16	5	6523	31	4	23	4	24
SRP_00075	Bacteria_small_SRP links to Rfam database...	0.59	0.59	0.59	20	5531	16	1	13	2	14
SRP_00077	Bacteria_small_SRP links to Rfam database...	0.24	0.24	0.24	9	6632	29	4	25	0	28
SRP_00079	Plant_SRP links to Rfam database...	0.77	0.80	0.75	70	41812	33	5	18	10	18
SRP_00081	Bacteria_small_SRP links to Rfam database...	0.69	0.74	0.64	23	5529	13	1	12	0	8
SRP_00084	Bacteria_small_SRP links to Rfam database...	0.87	0.88	0.86	30	5425	5	1	4	0	4
SRP_00085	Plant_SRP links to Rfam database...	0.65	0.63	0.67	64	45355	38	7	25	6	37
SRP_00086	Metazoa_SRP links to Rfam database...	0.59	0.61	0.58	61	44147	46	4	41	1	39
SRP_00087	Fungi_SRP links to Rfam database...	0.07	0.09	0.06	5	37317	86	24	55	7	53
SRP_00088	Bacteria_large_SRP links to Rfam database...	0.67	0.71	0.64	63	34093	38	4	31	3	26
SRP_00089	Bacteria_large_SRP links to Rfam database...	0.74	0.76	0.73	68	35685	26	3	22	1	22
SRP_00090	Bacteria_large_SRP links to Rfam database...	0.30	0.30	0.30	27	35420	65	5	59	1	63
SRP_00091	Fungi_SRP links to Rfam database...	0.80	0.82	0.78	78	52875	33	4	18	11	17
SRP_00094	Bacteria_small_SRP links to Rfam database...	0.84	0.88	0.81	21	4069	7	1	4	2	3
SRP_00095	Bacteria_small_SRP links to Rfam database...	0.85	0.88	0.81	22	3978	7	1	4	2	3
SRP_00098	Bacteria_small_SRP links to Rfam database...	0.69	0.70	0.68	26	6403	14	1	11	2	11
SRP_00099	Plant_SRP links to Rfam database...	0.60	0.62	0.58	59	44749	44	6	36	2	36
SRP_00102	Metazoa_SRP links to Rfam database...	0.76	0.74	0.78	75	44455	25	1	20	4	26
SRP_00103	Metazoa_SRP links to Rfam database...	0.80	0.78	0.81	80	45352	23	2	17	4	22
SRP_00104	Fungi_SRP links to Rfam database...	0.40	0.43	0.36	30	34370	60	7	46	7	39
SRP_00105	Bacteria_small_SRP links to Rfam database...	0.29	0.29	0.29	10	5531	24	1	23	0	24
SRP_00106	Bacteria_large_SRP links to Rfam database...	0.67	0.76	0.59	19	5221	16	5	8	3	6
SRP_00107	Bacteria_small_SRP links to Rfam database...	0.13	0.16	0.12	3	3629	25	5	18	2	16
SRP_00117	Metazoa_SRP links to Rfam database...	0.74	0.73	0.75	74	45352	27	2	23	2	28
SRP_00121	Bacteria_small_SRP links to Rfam database...	0.77	0.72	0.82	18	4256	7	0	4	3	7
SRP_00123	Metazoa_SRP links to Rfam database...	0.87	0.88	0.86	80	36492	17	3	10	4	11
SRP_00124	Metazoa_SRP links to Rfam database...	0.65	0.64	0.68	54	37048	33	1	25	7	31
SRP_00127	Fungi_SRP links to Rfam database...	0.71	0.71	0.70	85	72269	43	7	29	7	34
SRP_00128	Bacteria_small_SRP links to Rfam database...	0.76	0.81	0.73	29	6746	13	1	10	2	7
SRP_00130	Archaea_SRP links to Rfam database...	0.50	0.51	0.49	49	49670	54	9	42	3	48
SRP_00132	Bacteria_small_SRP links to Rfam database...	0.69	0.72	0.66	21	4819	14	0	11	3	8
SRP_00134	Bacteria_large_SRP links to Rfam database...	0.55	0.55	0.55	16	5966	17	3	10	4	13
SRP_00136	Fungi_SRP links to Rfam database...	0.35	0.38	0.33	27	44171	61	13	42	6	44
SRP_00137	Bacteria_small_SRP links to Rfam database...	0.74	0.84	0.66	21	4154	11	4	7	0	4
SRP_00141	Bacteria_small_SRP links to Rfam database...	0.94	0.95	0.93	39	6286	4	1	2	1	2
SRP_00142	Archaea_SRP links to Rfam database...	0.33	0.32	0.34	30	45967	61	8	51	2	63
SRP_00143	Archaea_SRP links to Rfam database...	0.37	0.38	0.36	38	49664	70	7	61	2	63
SRP_00144	Archaea_SRP links to Rfam database...	0.38	0.39	0.38	37	46567	65	9	52	4	57
SRP_00145	Bacteria_small_SRP links to Rfam database...	0.96	0.98	0.95	39	6287	3	1	1	1	1
SRP_00146	Bacteria_small_SRP links to Rfam database...	0.93	0.94	0.92	34	5216	3	1	2	0	2
SRP_00148	Fungi_SRP links to Rfam database...	0.55	0.57	0.53	50	49992	56	3	41	12	37
SRP_00152	Plant_SRP links to Rfam database...	0.69	0.66	0.72	68	45658	33	1	26	6	35
SRP_00153	Plant_SRP links to Rfam database...	0.77	0.77	0.77	82	46864	27	6	19	2	25
SRP_00157	Fungi_SRP links to Rfam database...	0.38	0.42	0.34	30	44165	66	15	43	8	42
SRP_00158	Fungi_SRP links to Rfam database...	0.32	0.38	0.26	44	124083	130	48	76	6	71
SRP_00160	Fungi_SRP links to Rfam database...	0.44	0.44	0.44	57	86190	78	7	66	5	73
SRP_00161	Bacteria_small_SRP links to Rfam database...	0.36	0.41	0.33	9	2823	18	5	13	0	13
SRP_00162	Bacteria_small_SRP links to Rfam database...	0.87	0.87	0.87	20	2903	4	0	3	1	3
SRP_00163	Bacteria_small_SRP links to Rfam database...	0.39	0.42	0.37	11	3456	19	4	15	0	15
SRP_00164	Bacteria_small_SRP links to Rfam database...	0.93	0.94	0.92	33	6867	5	1	2	2	2
SRP_00170	Bacteria_small_SRP links to Rfam database...	0.55	0.56	0.54	14	4069	13	0	12	1	11
SRP_00171	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	45354	97	15	82	0	88
SRP_00173	Bacteria_large_SRP links to Rfam database...	0.79	0.81	0.78	73	38132	28	1	20	7	17
SRP_00174	Bacteria_large_SRP links to Rfam database...	0.79	0.81	0.76	70	38689	28	7	15	6	16
SRP_00175	Fungi_SRP links to Rfam database...	0.17	0.18	0.17	15	44462	76	13	61	2	69
SRP_00178	Plant_SRP links to Rfam database...	0.30	0.29	0.30	30	45653	72	4	66	2	72
SRP_00179	Plant_SRP links to Rfam database...	0.72	0.70	0.75	73	45959	28	6	18	4	32
SRP_00181	Plant_SRP links to Rfam database...	0.30	0.29	0.32	30	45961	67	2	63	2	72
SRP_00182	Plant_SRP links to Rfam database...	0.74	0.73	0.76	74	45958	27	3	21	3	27
SRP_00184	Plant_SRP links to Rfam database...	0.31	0.30	0.32	30	45961	68	5	60	3	70
SRP_00188	Plant_SRP links to Rfam database...	0.21	0.20	0.22	16	31051	58	3	55	0	63
SRP_00194	Bacteria_small_SRP links to Rfam database...	0.77	0.81	0.74	17	3217	11	0	6	5	4
SRP_00197	Archaea_SRP links to Rfam database...	0.22	0.21	0.24	21	49368	66	5	61	0	80
SRP_00198	Archaea_SRP links to Rfam database...	0.25	0.24	0.26	25	50945	71	5	65	1	78
SRP_00199	Archaea_SRP links to Rfam database...	0.63	0.63	0.63	66	50936	41	3	35	3	39
SRP_00200	Bacteria_small_SRP links to Rfam database...	0.80	0.78	0.82	28	6869	7	1	5	1	8
SRP_00201	Archaea_SRP links to Rfam database...	0.71	0.70	0.72	78	47786	33	3	28	2	33
SRP_00202	Archaea_SRP links to Rfam database...	0.88	0.87	0.89	102	54170	16	2	11	3	15
SRP_00203	Archaea_SRP links to Rfam database...	0.72	0.74	0.70	78	48717	41	2	31	8	27
SRP_00204	Archaea_SRP links to Rfam database...	0.67	0.67	0.67	68	49040	33	7	26	0	34
SRP_00206	Archaea_SRP links to Rfam database...	0.86	0.88	0.83	95	47781	21	5	14	2	13
SRP_00208	Archaea_SRP links to Rfam database...	0.65	0.64	0.65	65	46565	37	9	26	2	36
SRP_00209	Bacteria_small_SRP links to Rfam database...	0.63	0.59	0.67	16	4632	9	1	7	1	11
SRP_00213	Bacteria_small_SRP links to Rfam database...	0.65	0.64	0.67	16	4162	10	1	7	2	9
SRP_00215	Bacteria_small_SRP links to Rfam database...	0.82	0.80	0.83	20	3216	4	0	4	0	5
SRP_00216	Bacteria_small_SRP links to Rfam database...	0.95	0.96	0.93	26	3375	3	1	1	1	1
SRP_00217	Bacteria_small_SRP links to Rfam database...	0.94	0.96	0.92	23	3296	5	0	2	3	1
SRP_00219	Bacteria_small_SRP links to Rfam database...	0.89	0.87	0.91	20	3299	4	0	2	2	3
SRP_00222	Bacteria_small_SRP links to Rfam database...	0.94	0.96	0.92	24	3055	3	1	1	1	1
SRP_00227	Bacteria_small_SRP links to Rfam database...	0.88	0.87	0.90	27	5121	3	1	2	0	4
SRP_00228	Metazoa_SRP links to Rfam database...	0.96	0.95	0.97	90	45358	12	0	3	9	5
SRP_00229	Bacteria_small_SRP links to Rfam database...	0.32	0.33	0.31	9	5224	20	5	15	0	18
SRP_00230	Fungi_SRP links to Rfam database...	0.75	0.76	0.75	68	39530	31	2	21	8	22
SRP_00231	Bacteria_small_SRP links to Rfam database...	0.87	0.88	0.86	30	5425	6	1	4	1	4
SRP_00233	Bacteria_small_SRP links to Rfam database...	1.00	1.00	1.00	33	5118	0	0	0	0	0
SRP_00234	Bacteria_large_SRP links to Rfam database...	0.80	0.79	0.81	68	36231	24	1	15	8	18
SRP_00239	Plant_SRP links to Rfam database...	0.29	0.31	0.28	29	50300	75	16	58	1	64
SRP_00240	Plant_SRP links to Rfam database...	0.65	0.66	0.64	67	48101	45	2	35	8	35
SRP_00241	Plant_SRP links to Rfam database...	0.44	0.48	0.41	39	45960	60	17	40	3	43
SRP_00243	Bacteria_small_SRP links to Rfam database...	0.95	0.90	1.00	28	5123	0	0	0	0	3
SRP_00244	Bacteria_small_SRP links to Rfam database...	0.51	0.51	0.51	20	6864	19	3	16	0	19
SRP_00247	Metazoa_SRP links to Rfam database...	0.38	0.40	0.36	35	47182	65	11	50	4	52
SRP_00250	Bacteria_small_SRP links to Rfam database...	0.78	0.81	0.76	29	6748	12	1	8	3	7
SRP_00251	Bacteria_small_SRP links to Rfam database...	0.75	0.78	0.72	28	6982	14	1	10	3	8
SRP_00252	Metazoa_SRP links to Rfam database...	0.50	0.54	0.46	48	49037	59	12	44	3	41
SRP_00253	Metazoa_SRP links to Rfam database...	0.51	0.54	0.47	49	49351	61	9	46	6	41
SRP_00254	Fungi_SRP links to Rfam database...	0.48	0.54	0.43	33	32309	51	12	31	8	28
SRP_00255	Archaea_SRP links to Rfam database...	0.62	0.62	0.62	58	47492	41	3	33	5	36
SRP_00257	Metazoa_SRP links to Rfam database...	0.86	0.86	0.86	93	50932	18	5	10	3	15
SRP_00260	Metazoa_SRP links to Rfam database...	0.62	0.66	0.58	66	47782	50	7	40	3	34
SRP_00265	Fungi_SRP links to Rfam database...	0.58	0.62	0.55	45	41246	50	10	27	13	28
SRP_00266	Bacteria_small_SRP links to Rfam database...	0.72	0.72	0.72	21	4627	9	1	7	1	8
SRP_00267	Metazoa_SRP links to Rfam database...	0.83	0.81	0.85	78	44459	21	0	14	7	18
SRP_00268	Bacteria_small_SRP links to Rfam database...	0.56	0.59	0.53	16	4156	15	4	10	1	11
SRP_00269	Bacteria_small_SRP links to Rfam database...	0.59	0.61	0.59	20	5016	14	3	11	0	13
SRP_00270	Bacteria_small_SRP links to Rfam database...	0.44	0.45	0.44	14	4624	18	2	16	0	17
SRP_00271	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	3213	27	1	26	0	24
SRP_00273	Bacteria_small_SRP links to Rfam database...	0.89	0.90	0.88	36	6745	7	1	4	2	4
SRP_00274	Bacteria_small_SRP links to Rfam database...	0.93	0.95	0.92	36	6864	5	1	2	2	2
SRP_00276	Archaea_SRP links to Rfam database...	0.85	0.84	0.87	92	50615	17	5	9	3	18
SRP_00278	Archaea_SRP links to Rfam database...	0.67	0.67	0.67	70	45951	38	3	32	3	35
SRP_00282	Metazoa_SRP links to Rfam database...	0.30	0.38	0.24	24	43266	83	25	50	8	39
SRP_00285	Bacteria_small_SRP links to Rfam database...	0.98	0.97	1.00	29	3712	0	0	0	0	1
SRP_00286	Fungi_SRP links to Rfam database...	0.62	0.62	0.63	108	136854	73	3	61	9	66
SRP_00287	Fungi_SRP links to Rfam database...	0.59	0.60	0.59	97	141614	77	12	55	10	65
SRP_00290	Fungi_SRP links to Rfam database...	0.67	0.68	0.66	92	100436	63	3	45	15	43
SRP_00292	Fungi_SRP links to Rfam database...	0.55	0.52	0.58	90	137394	73	3	63	7	83
SRP_00294	Fungi_SRP links to Rfam database...	0.59	0.59	0.60	98	129122	70	7	59	4	69
SRP_00295	Bacteria_small_SRP links to Rfam database...	0.96	0.97	0.95	37	6864	5	1	1	3	1
SRP_00299	Metazoa_SRP links to Rfam database...	0.90	0.83	0.98	82	44169	9	0	2	7	17
SRP_00300	Metazoa_SRP links to Rfam database...	0.90	0.87	0.92	82	44164	16	0	7	9	12
SRP_00301	Fungi_SRP links to Rfam database...	0.85	0.84	0.87	72	32557	19	1	10	8	14
SRP_00302	Fungi_SRP links to Rfam database...	0.38	0.40	0.38	32	41531	62	10	43	9	49
SRP_00303	Bacteria_small_SRP links to Rfam database...	0.81	0.84	0.77	27	6635	10	1	7	2	5
SRP_00308	Bacteria_large_SRP links to Rfam database...	0.73	0.75	0.71	66	36222	30	4	23	3	22
SRP_00310	Bacteria_small_SRP links to Rfam database...	0.87	0.87	0.87	20	2903	5	0	3	2	3
SRP_00312	Bacteria_small_SRP links to Rfam database...	0.41	0.37	0.45	10	4164	12	1	11	0	17
SRP_00315	Bacteria_small_SRP links to Rfam database...	0.87	0.87	0.87	20	2903	3	0	3	0	3
SRP_00317	Metazoa_SRP links to Rfam database...	0.93	0.90	0.96	88	45058	14	0	4	10	10
SRP_00318	Bacteria_small_SRP links to Rfam database...	0.87	0.87	0.87	20	2980	4	0	3	1	3
SRP_00321	Archaea_SRP links to Rfam database...	0.58	0.58	0.58	63	47477	48	11	35	2	45
SRP_00322	Archaea_SRP links to Rfam database...	0.66	0.64	0.68	70	48413	34	2	31	1	39
SRP_00323	Archaea_SRP links to Rfam database...	0.82	0.80	0.83	86	47175	20	0	17	3	21
SRP_00324	Bacteria_small_SRP links to Rfam database...	0.57	0.62	0.53	18	5322	16	5	11	0	11
SRP_00325	Bacteria_small_SRP links to Rfam database...	1.00	1.00	1.00	33	4338	0	0	0	0	0
SRP_00326	Bacteria_small_SRP links to Rfam database...	0.56	0.55	0.59	17	5021	12	3	9	0	14
SRP_00328	Metazoa_SRP links to Rfam database...	0.62	0.65	0.59	55	39528	43	10	28	5	30
SRP_00329	Metazoa_SRP links to Rfam database...	0.57	0.58	0.56	49	39816	43	8	30	5	36
SRP_00330	Archaea_SRP links to Rfam database...	0.42	0.39	0.46	37	50006	44	3	40	1	58
SRP_00331	Metazoa_SRP links to Rfam database...	0.54	0.54	0.55	47	37589	42	7	32	3	40
SRP_00332	Archaea_SRP links to Rfam database...	0.69	0.70	0.69	74	50296	35	7	26	2	32
SRP_00333	Bacteria_small_SRP links to Rfam database...	0.89	0.85	0.94	29	5120	2	0	2	0	5
SRP_00335	Bacteria_large_SRP links to Rfam database...	0.32	0.44	0.23	17	35171	78	26	31	21	22
SRP_00337	Bacteria_large_SRP links to Rfam database...	0.75	0.76	0.75	69	35419	25	2	21	2	22
SRP_00338	Bacteria_small_SRP links to Rfam database...	0.97	0.97	0.97	35	5424	1	0	1	0	1
SRP_00339	Archaea_SRP links to Rfam database...	0.70	0.67	0.73	63	44465	27	4	19	4	31
SRP_00340	Metazoa_SRP links to Rfam database...	0.51	0.55	0.47	45	41232	53	10	41	2	37
SRP_00341	Bacteria_small_SRP links to Rfam database...	0.40	0.42	0.38	13	4719	21	3	18	0	18
SRP_00342	Bacteria_small_SRP links to Rfam database...	0.59	0.60	0.58	15	3979	16	1	10	5	10
SRP_00347	Metazoa_SRP links to Rfam database...	0.77	0.77	0.77	74	46569	29	5	17	7	22
SRP_00350	Bacteria_small_SRP links to Rfam database...	0.85	0.85	0.85	23	3889	5	1	3	1	4
SRP_00356	Bacteria_small_SRP links to Rfam database...	0.83	0.80	0.86	24	5022	4	0	4	0	6
SRP_00357	Bacteria_small_SRP links to Rfam database...	0.96	0.97	0.95	35	5319	4	1	1	2	1
SRP_00358	Bacteria_small_SRP links to Rfam database...	0.93	0.91	0.94	32	6294	4	1	1	2	3
SRP_00361	Plant_SRP links to Rfam database...	0.75	0.78	0.72	70	41808	37	5	22	10	20
SRP_00363	Bacteria_small_SRP links to Rfam database...	0.95	0.97	0.94	29	4722	5	0	2	3	1
SRP_00365	Bacteria_small_SRP links to Rfam database...	0.96	0.96	0.96	26	3376	1	0	1	0	1
SRP_00367	Bacteria_small_SRP links to Rfam database...	0.96	0.97	0.94	34	6750	3	1	1	1	1
SRP_00368	Metazoa_SRP links to Rfam database...	0.87	0.83	0.91	81	43867	15	0	8	7	17
SRP_00369	Bacteria_small_SRP links to Rfam database...	0.89	0.89	0.89	31	5743	5	1	3	1	4
SRP_00371	Fungi_SRP links to Rfam database...	0.78	0.80	0.75	66	36227	32	3	19	10	16
SRP_00382	Fungi_SRP links to Rfam database...	0.56	0.56	0.55	96	141605	88	8	69	11	74
SRP_00383	Bacteria_small_SRP links to Rfam database...	0.13	0.13	0.15	3	3220	17	4	13	0	21
TMR_00173	tmRNA links to Rfam database...	0.31	0.36	0.27	15	42139	69	15	26	28	27
TMR_00357	tmRNA links to Rfam database...	0.38	0.37	0.38	34	82939	75	16	39	20	58
TMR_00601	tmRNA links to Rfam database...	0.31	0.33	0.30	14	58949	90	13	20	57	28
TMR_00696	tmRNA links to Rfam database...	0.17	0.18	0.17	21	84953	116	18	86	12	93

^top

Performance of RSpredict(seed) - scored lower in this pairwise comparison

1. Total counts & total scores for RSpredict(seed)

Total Base Pair Counts
Total TP	17152
Total TN	97026395
Total FP	13582
Total FP CONTRA	1581
Total FP INCONS	9998
Total FP COMP	2003
Total FN	57779

Total Scores
MCC	0.369
Average MCC ± 95% Confidence Intervals	0.246 ± 0.022
Sensitivity	0.229
Positive Predictive Value	0.597
Nr of predictions	702

^top

2. Individual counts for RSpredict(seed) [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00001	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	34191	0	0	0	0	75
ASE_00002	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	35511	0	0	0	0	73
ASE_00004	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	47894	2	0	1	1	97
ASE_00005	RNaseP_bact_a links to Rfam database...	0.14	0.03	0.57	4	57963	3	0	3	0	113
ASE_00006	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	47583	3	0	3	0	93
ASE_00007	RNaseP_bact_a links to Rfam database...	0.16	0.05	0.56	5	59676	4	0	4	0	105
ASE_00009	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	26106	0	0	0	0	67
ASE_00010	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	49754	16	4	12	0	82
ASE_00012	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	73914	6	0	6	0	123
ASE_00014	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	54285	0	0	0	0	106
ASE_00017	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	51038	2	0	2	0	64
ASE_00018	RNaseP_bact_a links to Rfam database...	0.13	0.04	0.35	6	80584	11	0	11	0	128
ASE_00020	RNaseP_bact_a links to Rfam database...	0.04	0.01	0.25	1	73916	3	0	3	0	125
ASE_00021	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	104189	7	1	6	0	160
ASE_00022	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	83008	21	3	17	1	124
ASE_00023	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	84246	9	0	9	0	127
ASE_00025	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	78605	1	0	1	0	71
ASE_00026	RNaseP_bact_a links to Rfam database...	0.07	0.02	0.25	2	59677	6	1	5	0	108
ASE_00028	RNaseP_bact_b links to Rfam database...	0.02	0.01	0.05	1	84646	22	5	14	3	125
ASE_00029	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	83024	4	0	4	0	122
ASE_00030	RNaseP_bact_a links to Rfam database...	0.11	0.03	0.44	4	85482	5	0	5	0	141
ASE_00031	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	86724	12	2	10	0	126
ASE_00032	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	80196	5	0	4	1	118
ASE_00033	RNaseP_bact_a links to Rfam database...	0.12	0.03	0.44	4	64971	5	0	5	0	117
ASE_00035	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	70496	6	0	4	2	118
ASE_00036	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	75845	10	0	10	0	132
ASE_00037	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	59335	5	0	5	0	110
ASE_00038	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	53623	5	0	5	0	101
ASE_00040	RNaseP_bact_a links to Rfam database...	0.02	0.01	0.07	1	78989	13	0	13	0	132
ASE_00041	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	57624	6	0	6	0	108
ASE_00042	RNaseP_bact_a links to Rfam database...	0.09	0.03	0.29	4	90086	10	0	10	0	141
ASE_00044	RNaseP_bact_a links to Rfam database...	0.03	0.01	0.10	1	54605	9	0	9	0	104
ASE_00045	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	47271	9	0	7	2	80
ASE_00046	RNaseP_bact_a links to Rfam database...	0.11	0.03	0.43	3	50396	4	0	4	0	100
ASE_00047	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	74303	2	0	2	0	130
ASE_00052	RNaseP_bact_a links to Rfam database...	0.18	0.04	0.71	5	61418	2	0	2	0	107
ASE_00053	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	79398	3	0	3	0	133
ASE_00057	RNaseP_bact_a links to Rfam database...	0.05	0.01	0.17	2	82203	11	0	10	1	132
ASE_00064	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	45448	3	0	3	0	89
ASE_00066	RNaseP_bact_a links to Rfam database...	0.16	0.03	0.80	4	72385	1	0	1	0	126
ASE_00068	RNaseP_bact_a links to Rfam database...	0.05	0.01	0.25	1	37671	3	0	3	0	84
ASE_00069	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	83022	6	1	5	0	140
ASE_00074	RNaseP_bact_a links to Rfam database...	0.21	0.07	0.67	8	67884	4	0	4	0	111
ASE_00075	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	108804	8	0	7	1	162
ASE_00076	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	68256	9	0	9	0	118
ASE_00077	RNaseP_bact_a links to Rfam database...	0.09	0.02	0.33	2	45144	4	1	3	0	84
ASE_00078	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	43071	0	0	0	0	83
ASE_00079	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	55606	5	0	5	0	100
ASE_00080	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	71623	9	2	6	1	123
ASE_00081	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	49768	2	0	2	0	97
ASE_00082	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	70494	6	0	6	0	116
ASE_00083	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	62477	5	0	4	1	110
ASE_00084	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	53625	4	0	3	1	99
ASE_00087	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	88406	4	0	4	0	144
ASE_00090	RNaseP_bact_a links to Rfam database...	0.04	0.01	0.17	1	55605	5	0	5	0	100
ASE_00092	RNaseP_bact_a links to Rfam database...	0.04	0.01	0.20	1	63541	4	0	4	0	112
ASE_00096	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	63542	4	0	4	0	115
ASE_00099	RNaseP_bact_a links to Rfam database...	0.20	0.07	0.62	8	64607	5	0	5	0	112
ASE_00100	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	82213	2	1	1	0	76
ASE_00102	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	117845	10	0	10	0	166
ASE_00104	RNaseP_bact_a links to Rfam database...	0.10	0.03	0.31	4	64248	9	0	9	0	115
ASE_00105	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	64254	7	0	7	0	111
ASE_00107	RNaseP_bact_a links to Rfam database...	0.13	0.03	0.50	4	73145	4	0	4	0	123
ASE_00108	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	46969	2	2	0	0	63
ASE_00111	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	50084	2	2	0	0	57
ASE_00112	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	75461	5	1	4	0	116
ASE_00114	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	45440	14	0	11	3	77
ASE_00115	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	54615	0	0	0	0	101
ASE_00116	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	31626	0	0	0	0	66
ASE_00118	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	60722	6	0	4	2	102
ASE_00119	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	62834	3	0	1	2	108
ASE_00120	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	46970	1	0	1	0	94
ASE_00121	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	45150	0	0	0	0	92
ASE_00122	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	43360	6	0	5	1	88
ASE_00123	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	38499	4	0	4	0	85
ASE_00125	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	39337	3	0	3	0	88
ASE_00126	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	40468	2	0	2	0	82
ASE_00128	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	53297	4	1	3	0	100
ASE_00129	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	62821	18	1	13	4	111
ASE_00131	RNaseP_bact_a links to Rfam database...	0.30	0.15	0.59	13	39318	15	0	9	6	72
ASE_00132	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	50401	3	0	2	1	95
ASE_00134	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	50397	6	0	6	0	95
ASE_00135	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	63187	3	0	3	0	109
ASE_00136	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	48202	4	0	3	1	92
ASE_00137	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	48512	4	0	4	0	98
ASE_00138	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	40467	3	0	3	0	81
ASE_00139	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	54280	5	0	5	0	104
ASE_00140	RNaseP_bact_a links to Rfam database...	0.04	0.01	0.20	1	70871	4	1	3	0	124
ASE_00142	RNaseP_bact_a links to Rfam database...	0.06	0.02	0.25	2	67153	6	0	6	0	120
ASE_00145	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	70125	0	0	0	0	111
ASE_00146	RNaseP_bact_a links to Rfam database...	0.09	0.02	0.38	3	70868	5	0	5	0	121
ASE_00148	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	112574	1	1	0	0	154
ASE_00151	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	52000	4	1	2	1	98
ASE_00153	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	57629	1	1	0	0	73
ASE_00154	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	65341	0	0	0	0	107
ASE_00155	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	93528	0	0	0	0	142
ASE_00161	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	53619	12	2	7	3	87
ASE_00163	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	53297	4	1	3	0	93
ASE_00165	RNaseP_bact_a links to Rfam database...	0.11	0.02	0.67	2	52972	1	0	1	0	99
ASE_00168	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	60725	1	1	0	0	64
ASE_00169	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	57287	4	0	4	0	107
ASE_00170	RNaseP_bact_a links to Rfam database...	0.04	0.01	0.17	1	48822	5	0	5	0	92
ASE_00171	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	48513	4	0	3	1	94
ASE_00172	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	58988	8	0	8	0	106
ASE_00174	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	61075	0	0	0	0	109
ASE_00175	RNaseP_bact_a links to Rfam database...	0.05	0.02	0.14	2	60017	14	0	12	2	105
ASE_00176	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	60020	11	3	8	0	110
ASE_00179	RNaseP_bact_a links to Rfam database...	0.09	0.04	0.23	3	44240	12	1	9	2	81
ASE_00180	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	51355	5	3	2	0	100
ASE_00181	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	57627	3	0	3	0	106
ASE_00182	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	84254	1	0	1	0	136
ASE_00184	RNaseP_bact_a links to Rfam database...	0.09	0.03	0.30	3	54605	7	0	7	0	99
ASE_00185	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	73531	5	0	5	0	128
ASE_00186	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	78994	9	1	8	0	132
ASE_00187	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	68630	5	3	2	0	115
ASE_00189	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	63180	13	1	9	3	102
ASE_00190	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	45437	15	3	11	1	90
ASE_00191	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	29646	0	0	0	0	61
ASE_00192	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	84653	14	3	10	1	133
ASE_00194	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	73523	15	0	13	2	119
ASE_00196	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	31626	0	0	0	0	75
ASE_00197	RNaseP_bact_a links to Rfam database...	0.03	0.01	0.13	1	89245	7	0	7	0	144
ASE_00198	RNaseP_bact_a links to Rfam database...	0.15	0.04	0.57	4	52643	3	0	3	0	98
ASE_00203	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46663	2	0	2	0	96
ASE_00204	RNaseP_bact_b links to Rfam database...	0.06	0.03	0.13	3	67873	20	6	14	0	109
ASE_00205	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	46056	0	0	0	0	90
ASE_00209	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	43071	0	0	0	0	88
ASE_00210	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	27261	0	0	0	0	65
ASE_00212	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	93956	5	0	5	0	148
ASE_00213	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	27261	0	0	0	0	66
ASE_00214	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	56271	9	0	9	0	103
ASE_00215	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	48513	3	0	3	0	99
ASE_00216	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	39338	2	0	2	0	82
ASE_00217	RNaseP_bact_a links to Rfam database...	0.16	0.04	0.57	4	40463	3	0	3	0	86
ASE_00221	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	64617	3	0	3	0	117
ASE_00222	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	112101	0	0	0	0	157
ASE_00227	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	78993	10	3	7	0	133
ASE_00228	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46967	4	0	4	0	86
ASE_00229	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	42482	4	1	3	0	87
ASE_00231	RNaseP_bact_a links to Rfam database...	0.07	0.02	0.22	2	47886	8	2	5	1	94
ASE_00232	RNaseP_bact_a links to Rfam database...	0.09	0.02	0.33	2	38497	4	0	4	0	82
ASE_00234	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	75463	3	1	2	0	129
ASE_00237	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	45751	2	0	2	0	56
ASE_00238	RNaseP_bact_a links to Rfam database...	0.07	0.01	0.50	1	64259	1	0	1	0	113
ASE_00240	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46660	5	0	5	0	93
ASE_00241	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	43954	2	0	2	0	87
ASE_00242	RNaseP_bact_a links to Rfam database...	0.12	0.04	0.40	4	61065	6	0	6	0	108
ASE_00245	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	55278	2	0	0	2	78
ASE_00246	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	48202	3	0	3	0	67
ASE_00247	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	54284	1	1	0	0	64
ASE_00248	RNaseP_bact_a links to Rfam database...	0.11	0.03	0.43	3	62474	4	0	4	0	111
ASE_00250	RNaseP_bact_a links to Rfam database...	0.08	0.02	0.30	3	78993	7	0	7	0	128
ASE_00251	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	17766	0	0	0	0	43
ASE_00252	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	115437	4	0	3	1	168
ASE_00254	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	36850	6	1	5	0	82
ASE_00255	RNaseP_bact_a links to Rfam database...	0.12	0.03	0.50	4	74683	4	0	4	0	126
ASE_00257	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	51035	5	0	5	0	97
ASE_00258	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	26796	0	0	0	0	54
ASE_00259	RNaseP_bact_a links to Rfam database...	0.11	0.02	0.50	3	73147	3	0	3	0	118
ASE_00263	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	70490	10	0	10	0	120
ASE_00264	RNaseP_nuc links to Rfam database...	0.12	0.02	0.67	2	49138	3	0	1	2	98
ASE_00267	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	45145	6	0	5	1	88
ASE_00270	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	72388	3	0	2	1	128
ASE_00274	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	55608	3	0	3	0	103
ASE_00277	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	48203	2	0	2	0	91
ASE_00279	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	53299	2	0	2	0	101
ASE_00280	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	52001	2	0	2	0	98
ASE_00281	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	44548	3	0	3	0	88
ASE_00282	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	77811	4	0	4	0	127
ASE_00283	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	61769	7	0	7	0	107
ASE_00284	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	58309	2	1	1	0	108
ASE_00285	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	69000	6	0	6	0	122
ASE_00286	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46659	6	0	6	0	92
ASE_00287	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	54939	7	0	7	0	103
ASE_00288	RNaseP_bact_a links to Rfam database...	0.10	0.02	0.50	2	46052	2	0	2	0	91
ASE_00289	RNaseP_bact_a links to Rfam database...	0.05	0.01	0.18	2	101014	10	1	8	1	155
ASE_00292	RNaseP_bact_a links to Rfam database...	0.15	0.04	0.50	6	81798	6	0	6	0	132
ASE_00294	RNaseP_bact_a links to Rfam database...	0.08	0.02	0.31	4	114468	9	0	9	0	167
ASE_00295	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	73909	11	0	11	0	131
ASE_00296	RNaseP_bact_a links to Rfam database...	0.09	0.03	0.29	4	91792	10	1	9	0	141
ASE_00297	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	52972	3	0	3	0	98
ASE_00298	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	67525	3	1	2	0	113
ASE_00299	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	49451	5	0	4	1	100
ASE_00303	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	67895	1	0	1	0	95
ASE_00305	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	54596	22	4	15	3	85
ASE_00313	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	62479	4	0	2	2	89
ASE_00316	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	107880	0	0	0	0	98
ASE_00318	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	80184	21	0	16	5	118
ASE_00321	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	54597	21	1	17	3	88
ASE_00327	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	57285	6	1	5	0	89
ASE_00328	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	72760	15	0	11	4	112
ASE_00329	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	40755	0	0	0	0	63
ASE_00330	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	56277	3	0	3	0	90
ASE_00332	RNaseP_bact_a links to Rfam database...	0.15	0.04	0.50	6	81798	6	0	6	0	132
ASE_00335	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	75451	19	1	14	4	116
ASE_00337	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	39340	2	0	0	2	71
ASE_00338	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	66427	3	0	3	0	98
ASE_00339	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	80192	8	0	8	0	119
ASE_00340	RNaseP_bact_a links to Rfam database...	0.04	0.01	0.14	1	46049	6	0	6	0	84
ASE_00342	RNaseP_bact_a links to Rfam database...	0.09	0.03	0.30	3	62471	7	0	7	0	112
ASE_00343	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	83429	8	1	6	1	113
ASE_00346	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	48205	0	0	0	0	97
ASE_00353	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	57968	2	0	2	0	107
ASE_00359	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	42778	0	0	0	0	80
ASE_00360	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	29403	0	0	0	0	65
ASE_00361	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	75463	3	0	3	0	127
ASE_00362	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	48200	5	0	5	0	91
ASE_00363	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	51354	6	0	6	0	94
ASE_00364	RNaseP_bact_a links to Rfam database...	0.11	0.02	0.67	2	54282	1	0	1	0	103
ASE_00366	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	58652	1	0	1	0	98
ASE_00367	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	43067	5	0	4	1	86
ASE_00369	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	55939	6	1	5	0	107
ASE_00370	RNaseP_bact_a links to Rfam database...	0.10	0.02	0.40	2	41900	3	0	3	0	82
ASE_00372	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	51997	6	0	6	0	100
ASE_00374	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	44843	7	0	7	0	88
ASE_00375	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	60373	5	0	5	0	110
ASE_00376	RNaseP_bact_a links to Rfam database...	0.04	0.01	0.17	1	56947	5	0	5	0	104
ASE_00377	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	57628	2	0	2	0	107
ASE_00379	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46050	7	0	6	1	89
ASE_00380	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	54942	4	2	2	0	99
ASE_00382	RNaseP_bact_a links to Rfam database...	0.06	0.01	0.33	1	41902	3	0	2	1	83
ASE_00383	RNaseP_bact_a links to Rfam database...	0.06	0.01	0.33	1	54612	2	0	2	0	104
ASE_00384	RNaseP_bact_a links to Rfam database...	0.05	0.01	0.20	1	48511	4	0	4	0	91
ASE_00385	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	41902	3	0	3	0	81
ASE_00386	RNaseP_bact_a links to Rfam database...	0.10	0.03	0.33	3	50394	7	0	6	1	93
ASE_00387	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	55940	5	0	5	0	104
ASE_00388	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	45749	5	0	4	1	89
ASE_00390	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	42192	4	0	3	1	85
ASE_00393	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	47891	4	0	4	0	93
ASE_00394	RNaseP_bact_a links to Rfam database...	0.03	0.01	0.07	1	46956	15	0	14	1	92
ASE_00395	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	41612	6	0	4	2	84
ASE_00396	RNaseP_bact_a links to Rfam database...	0.15	0.04	0.60	3	41611	2	0	2	0	80
ASE_00397	RNaseP_bact_a links to Rfam database...	0.04	0.01	0.17	1	54609	5	1	4	0	104
ASE_00398	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	55934	11	0	11	0	104
ASE_00400	RNaseP_bact_a links to Rfam database...	0.08	0.02	0.33	2	57964	4	3	1	0	104
ASE_00401	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	77015	13	0	13	0	126
ASE_00402	RNaseP_bact_a links to Rfam database...	0.05	0.01	0.25	1	42482	3	0	3	0	84
ASE_00403	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	55941	4	0	4	0	107
ASE_00404	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	43065	9	0	6	3	85
ASE_00406	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	48823	6	0	5	1	94
ASE_00411	RNaseP_bact_a links to Rfam database...	0.11	0.02	0.50	2	49451	2	0	2	0	87
ASE_00412	RNaseP_bact_a links to Rfam database...	0.04	0.01	0.17	1	58305	5	1	4	0	104
ASE_00413	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	44546	5	0	5	0	81
ASE_00414	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46359	1	0	1	0	95
ASE_00415	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	54941	5	1	4	0	103
ASE_00416	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	77412	9	0	9	0	127
ASE_00417	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	54615	0	0	0	0	100
ASE_00418	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	38781	0	0	0	0	75
ASE_00419	RNaseP_bact_a links to Rfam database...	0.10	0.03	0.33	3	54937	6	0	6	0	100
ASE_00420	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	43365	0	0	0	0	63
ASE_00422	RNaseP_bact_a links to Rfam database...	0.05	0.02	0.12	2	46954	19	1	14	4	92
ASE_00423	RNaseP_bact_a links to Rfam database...	0.14	0.04	0.50	4	56945	4	0	4	0	105
ASE_00426	RNaseP_bact_a links to Rfam database...	0.11	0.04	0.31	4	61062	9	0	9	0	104
ASE_00427	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	40755	0	0	0	0	46
ASE_00428	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	76629	8	0	7	1	125
ASE_00430	RNaseP_bact_a links to Rfam database...	0.07	0.02	0.25	2	46963	6	0	6	0	95
ASE_00431	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46358	2	0	2	0	95
ASE_00434	RNaseP_bact_b links to Rfam database...	0.04	0.02	0.11	2	68246	20	1	16	3	108
ASE_00437	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	79395	7	0	6	1	135
ASE_00438	RNaseP_bact_a links to Rfam database...	0.02	0.01	0.07	1	66052	13	2	11	0	115
ASE_00441	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	64258	3	0	3	0	112
ASE_00443	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	26794	2	0	2	0	50
ASE_00447	RNaseP_bact_a links to Rfam database...	0.15	0.03	0.67	4	60372	2	0	2	0	112
ASE_00448	RNaseP_bact_a links to Rfam database...	0.04	0.01	0.14	1	64254	6	1	5	0	111
ASE_00451	RNaseP_bact_a links to Rfam database...	0.11	0.03	0.36	4	70865	7	0	7	0	121
ASE_00454	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	43365	0	0	0	0	63
CRW_00013	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	103737	3	0	3	0	115
CRW_00016	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	77418	3	0	3	0	120
CRW_00024	SSU_rRNA_archaea links to Rfam database...	0.78	0.76	0.80	346	1085169	116	15	71	30	112
CRW_00048	SSU_rRNA_bacteria links to Rfam database...	0.65	0.57	0.74	268	1170853	120	15	79	26	202
CRW_00054	SSU_rRNA_bacteria links to Rfam database...	0.66	0.59	0.75	269	1107457	114	15	75	24	187
CRW_00059	SSU_rRNA_bacteria links to Rfam database...	0.63	0.54	0.73	257	1172394	120	18	77	25	216
CRW_00061	SSU_rRNA_bacteria links to Rfam database...	0.62	0.54	0.72	258	1181594	124	19	82	23	218
CRW_00068	SSU_rRNA_bacteria links to Rfam database...	0.65	0.57	0.75	261	1108955	113	16	73	24	196
CRW_00096	SSU_rRNA_bacteria links to Rfam database...	0.66	0.57	0.75	267	1178524	119	14	75	30	198
CRW_00140	SSU_rRNA_bacteria links to Rfam database...	0.67	0.59	0.76	273	1135921	112	13	71	28	190
CRW_00141	SSU_rRNA_bacteria links to Rfam database...	0.63	0.55	0.72	260	1201662	126	16	87	23	216
CRW_00150	SSU_rRNA_bacteria links to Rfam database...	0.66	0.58	0.74	270	1152558	117	19	74	24	196
CRW_00152	SSU_rRNA_bacteria links to Rfam database...	0.63	0.54	0.74	252	1180075	110	15	74	21	219
CRW_00166	SSU_rRNA_bacteria links to Rfam database...	0.64	0.55	0.74	258	1190849	118	11	78	29	210
CRW_00173	SSU_rRNA_bacteria links to Rfam database...	0.62	0.55	0.71	243	1082316	119	17	80	22	202
CRW_00177	SSU_rRNA_bacteria links to Rfam database...	0.67	0.58	0.77	274	1178524	103	15	67	21	199
CRW_00196	SSU_rRNA_bacteria links to Rfam database...	0.63	0.54	0.73	257	1207883	117	16	79	22	218
CRW_00230	SSU_rRNA_bacteria links to Rfam database...	0.62	0.54	0.71	257	1198565	127	16	88	23	221
CRW_00245	SSU_rRNA_bacteria links to Rfam database...	0.63	0.55	0.72	248	1105984	121	17	79	25	205
CRW_00248	SSU_rRNA_bacteria links to Rfam database...	0.65	0.57	0.75	278	1218768	123	17	78	28	206
CRW_00250	SSU_rRNA_bacteria links to Rfam database...	0.67	0.60	0.74	285	1198543	124	18	80	26	193
CRW_00256	SSU_rRNA_bacteria links to Rfam database...	0.62	0.54	0.72	251	1192392	119	17	80	22	217
CRW_00270	SSU_rRNA_bacteria links to Rfam database...	0.64	0.56	0.74	255	1111941	113	15	75	23	200
CRW_00271	SSU_rRNA_bacteria links to Rfam database...	0.62	0.53	0.73	243	1122417	115	15	76	24	219
CRW_00273	SSU_rRNA_bacteria links to Rfam database...	0.64	0.56	0.73	250	1085260	113	15	76	22	196
CRW_00275	SSU_rRNA_bacteria links to Rfam database...	0.63	0.54	0.72	249	1114926	120	15	81	24	208
CRW_00277	SSU_rRNA_bacteria links to Rfam database...	0.61	0.52	0.72	235	1110468	113	17	75	21	218
CRW_00280	SSU_rRNA_bacteria links to Rfam database...	0.61	0.53	0.70	240	1117918	122	15	87	20	213
CRW_00281	SSU_rRNA_bacteria links to Rfam database...	0.65	0.56	0.74	260	1144991	117	12	78	27	204
CRW_00283	SSU_rRNA_bacteria links to Rfam database...	0.53	0.42	0.68	180	1015761	96	14	70	12	252
CRW_00289	SSU_rRNA_bacteria links to Rfam database...	0.60	0.50	0.70	240	1189312	122	16	85	21	236
CRW_00292	SSU_rRNA_bacteria links to Rfam database...	0.55	0.43	0.72	196	1123976	99	12	66	21	265
CRW_00306	SSU_rRNA_eukarya links to Rfam database...	0.00	0.00	0.00	0	1445558	306	53	239	14	462
CRW_00366	SSU_rRNA_eukarya links to Rfam database...	0.00	0.00	0.00	0	1579464	301	50	239	12	482
CRW_00371	SSU_rRNA_eukarya links to Rfam database...	0.00	0.00	0.00	0	1611598	319	50	262	7	496
CRW_00379	SSU_rRNA_eukarya links to Rfam database...	0.00	0.00	0.00	0	2126581	414	77	295	42	534
CRW_00411	SSU_rRNA_eukarya links to Rfam database...	0.00	0.00	0.00	0	1615206	309	45	252	12	496
CRW_00414	SSU_rRNA_eukarya links to Rfam database...	0.00	0.00	0.00	0	1665933	312	53	239	20	495
CRW_00466	SSU_rRNA_bacteria links to Rfam database...	0.64	0.55	0.74	252	1116423	114	13	77	24	206
CRW_00589	SSU_rRNA_bacteria links to Rfam database...	0.63	0.53	0.74	236	1094141	110	9	74	27	209
CRW_00590	SSU_rRNA_bacteria links to Rfam database...	0.64	0.54	0.76	245	1119432	103	8	71	24	207
CRW_00591	SSU_rRNA_bacteria links to Rfam database...	0.66	0.58	0.76	258	1098562	118	11	72	35	188
CRW_00610	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	36310	5	0	5	0	81
CRW_00613	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	34979	1	0	1	0	78
CRW_00614	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	121764	17	0	7	10	57
CRW_00618	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	56279	1	0	1	0	61
CRW_00619	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	165014	28	5	6	17	73
CRW_00620	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	150964	27	4	7	16	63
CRW_00621	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	153172	32	5	4	23	71
CRW_00623	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	129777	25	6	12	7	83
CRW_00633	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	63541	5	0	5	0	106
CRW_00634	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	64620	1	0	0	1	94
CRW_00670	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	70124	4	0	1	3	120
CRW_00671	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	62835	0	0	0	0	117
CRW_00672	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	72386	7	0	4	3	111
CRW_00674	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	83436	1	0	0	1	124
CRW_00676	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	93527	2	0	1	1	115
CRW_00692	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	68635	3	0	0	3	90
CRW_00759	SSU_rRNA_eukarya links to Rfam database...	0.00	0.00	0.00	1	1636859	310	50	235	25	480
CRW_00763	SSU_rRNA_bacteria links to Rfam database...	0.62	0.49	0.79	217	1215744	86	5	54	27	229
CRW_00778	SSU_rRNA_bacteria links to Rfam database...	0.59	0.48	0.73	185	1201773	99	7	60	32	199
CRW_00789	SSU_rRNA_bacteria links to Rfam database...	0.64	0.56	0.74	249	1137451	114	13	73	28	198
CRW_00795	SSU_rRNA_bacteria links to Rfam database...	0.58	0.47	0.72	184	1152666	117	7	64	46	210
CRW_00849	SSU_rRNA_bacteria links to Rfam database...	0.60	0.49	0.73	232	1117943	100	11	74	15	238
CRW_00997	SSU_rRNA_bacteria links to Rfam database...	0.63	0.55	0.72	256	1135921	123	14	87	22	208
CRW_01153	SSU_rRNA_eukarya links to Rfam database...	0.00	0.00	0.00	0	1606225	319	65	238	16	503
CRW_01171	SSU_rRNA_eukarya links to Rfam database...	0.00	0.00	0.00	0	1593701	318	50	254	14	506
CRW_01343	SSU_rRNA_archaea links to Rfam database...	0.52	0.41	0.68	177	977639	95	12	73	10	257
PDB_00005	Tymo_tRNA-like links to Rfam database...	0.71	0.57	0.89	8	937	1	0	1	0	6
PDB_00012	mir-TAR links to Rfam database...	1.00	1.00	1.00	7	399	1	0	0	1	0
PDB_00213	Gammaretro_CES links to Rfam database...	0.56	0.49	0.65	20	5019	11	0	11	0	21
PDB_00553	mir-TAR links to Rfam database...	0.90	0.82	1.00	9	456	0	0	0	0	2
PDB_00703	SSU_rRNA_bacteria links to Rfam database...	0.63	0.53	0.76	261	1073500	115	11	73	31	234
PDB_00716	HDV_ribozyme links to Rfam database...	0.59	0.48	0.73	11	2686	4	0	4	0	12
PDB_00741	Entero_5_CRE links to Rfam database...	0.00	0.00	0.00	0	703	0	0	0	0	17
PDB_00810	s2m links to Rfam database...	0.80	0.65	1.00	11	1070	0	0	0	0	6
PDB_00827	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	27026	2	0	2	0	81
PDB_00828	Purine links to Rfam database...	0.54	0.41	0.73	11	2470	4	2	2	0	16
PDB_00829	Purine links to Rfam database...	0.74	0.63	0.88	15	2261	2	2	0	0	9
PDB_00854	SSU_rRNA_bacteria links to Rfam database...	0.60	0.48	0.76	259	1500435	126	9	75	42	276
PDB_00876	HIV_FE links to Rfam database...	0.57	0.50	0.67	10	975	5	0	5	0	10
PDB_00919	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	44249	5	0	4	1	103
PDB_01001	tRNA links to Rfam database...	0.00	0.00	0.00	0	2144	1	0	1	0	18
PDB_01020	Purine links to Rfam database...	0.76	0.65	0.88	15	2261	2	2	0	0	8
PDB_01050	UnaL2 links to Rfam database...	0.62	0.46	0.86	6	623	2	0	1	1	7
PDB_01051	Telomerase-cil links to Rfam database...	-0.01	0.00	0.00	0	899	4	2	2	0	13
PDB_01073	SAM links to Rfam database...	0.39	0.18	0.86	6	4364	1	0	1	0	28
PDB_01088	SSU_rRNA_bacteria links to Rfam database...	0.60	0.47	0.76	259	1471129	122	8	74	40	288
PDB_01092	glmS links to Rfam database...	0.48	0.37	0.63	19	10123	13	1	10	2	33
PDB_01103	SSU_rRNA_bacteria links to Rfam database...	0.60	0.47	0.76	266	1606178	119	12	72	35	296
PDB_01105	SSU_rRNA_bacteria links to Rfam database...	0.61	0.50	0.76	268	1433617	119	7	79	33	272
PDB_01114	TPP links to Rfam database...	0.74	0.56	1.00	15	2835	0	0	0	0	12
PDB_01120	SSU_rRNA_bacteria links to Rfam database...	0.64	0.53	0.78	280	1204768	120	9	71	40	247
PDB_01152	HIV_FS2 links to Rfam database...	0.88	0.79	1.00	11	550	0	0	0	0	3
PDB_01236	ykoK links to Rfam database...	0.00	0.00	0.00	0	11621	7	0	7	0	54
PDB_01273	SSU_rRNA_bacteria links to Rfam database...	0.65	0.55	0.76	272	1117903	116	13	72	31	219
RFA_00389	Hammerhead_3 links to Rfam database...	0.63	0.40	1.00	6	1425	1	0	0	1	9
RFA_00390	Hammerhead_3 links to Rfam database...	0.63	0.40	1.00	6	1425	1	0	0	1	9
RFA_00391	Hammerhead_3 links to Rfam database...	0.63	0.40	1.00	6	1425	1	0	0	1	9
RFA_00396	Hammerhead_3 links to Rfam database...	0.63	0.40	1.00	6	1425	1	0	0	1	9
RFA_00402	Hammerhead_3 links to Rfam database...	0.63	0.40	1.00	6	1425	0	0	0	0	9
RFA_00409	Hammerhead_3 links to Rfam database...	0.58	0.33	1.00	5	1426	1	0	0	1	10
RFA_00416	Hammerhead_3 links to Rfam database...	0.63	0.40	1.00	6	1479	1	0	0	1	9
RFA_00425	Hammerhead_3 links to Rfam database...	0.63	0.40	1.00	6	1647	0	0	0	0	9
RFA_00427	Hammerhead_3 links to Rfam database...	0.00	0.00	0.00	0	1482	3	0	3	0	15
RFA_00433	Hammerhead_3 links to Rfam database...	0.63	0.40	1.00	6	1425	1	0	0	1	9
RFA_00434	Hammerhead_3 links to Rfam database...	0.63	0.40	1.00	6	1425	1	0	0	1	9
RFA_00436	Hammerhead_3 links to Rfam database...	0.63	0.40	1.00	6	1425	1	0	0	1	9
RFA_00440	Hammerhead_3 links to Rfam database...	0.63	0.40	1.00	6	1479	1	0	0	1	9
RFA_00442	Hammerhead_3 links to Rfam database...	0.63	0.40	1.00	6	1425	1	0	0	1	9
RFA_00444	Hammerhead_3 links to Rfam database...	0.00	0.00	0.00	0	1538	2	0	2	0	15
RFA_00446	Hammerhead_3 links to Rfam database...	-0.01	0.00	0.00	0	1481	4	0	4	0	15
RFA_00449	Hammerhead_3 links to Rfam database...	-0.01	0.00	0.00	0	1481	4	0	4	0	15
RFA_00582	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	5980	4	0	0	4	0
RFA_00583	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4935	7	0	0	7	0
RFA_00584	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	2911	2	0	0	2	0
RFA_00585	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4836	6	0	0	6	0
RFA_00586	Y_RNA links to Rfam database...	0.97	0.93	1.00	14	3902	2	0	0	2	1
RFA_00587	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4836	4	0	0	4	0
RFA_00588	Y_RNA links to Rfam database...	0.97	0.93	1.00	14	4546	4	0	0	4	1
RFA_00589	Y_RNA links to Rfam database...	0.93	0.87	1.00	13	4358	3	0	0	3	2
RFA_00594	Y_RNA links to Rfam database...	0.93	0.87	1.00	13	2762	2	0	0	2	2
RFA_00596	Y_RNA links to Rfam database...	0.82	0.67	1.00	10	5985	5	0	0	5	5
RFA_00597	Telomerase-vert links to Rfam database...	0.00	0.00	0.00	0	97889	17	4	10	3	109
RFA_00598	Telomerase-vert links to Rfam database...	0.00	0.00	0.00	0	84655	11	0	11	0	101
RFA_00599	Telomerase-vert links to Rfam database...	0.43	0.25	0.74	28	101437	25	0	10	15	83
RFA_00600	Telomerase-vert links to Rfam database...	0.00	0.00	0.00	0	120278	17	1	16	0	100
RFA_00601	Telomerase-vert links to Rfam database...	0.57	0.38	0.86	43	99185	16	1	6	9	71
RFA_00602	Telomerase-vert links to Rfam database...	0.09	0.02	0.50	2	101471	3	1	1	1	114
RFA_00603	Telomerase-cil links to Rfam database...	0.00	0.00	0.00	0	13520	11	2	8	1	35
RFA_00604	Telomerase-cil links to Rfam database...	0.00	0.00	0.00	0	13529	1	0	1	0	35
RFA_00605	Telomerase-cil links to Rfam database...	0.00	0.00	0.00	0	15215	11	2	8	1	35
RFA_00606	Telomerase-cil links to Rfam database...	0.00	0.00	0.00	0	21309	12	3	9	0	39
RFA_00607	Telomerase-cil links to Rfam database...	0.00	0.00	0.00	0	17752	15	0	14	1	36
RFA_00609	Telomerase-cil links to Rfam database...	0.00	0.00	0.00	0	17949	9	1	5	3	37
RFA_00610	Telomerase-cil links to Rfam database...	0.00	0.00	0.00	0	17195	10	3	7	0	37
RFA_00611	Telomerase-cil links to Rfam database...	0.00	0.00	0.00	0	13032	10	0	9	1	35
RFA_00613	Telomerase-cil links to Rfam database...	0.00	0.00	0.00	0	12879	1	0	1	0	35
RFA_00615	Telomerase-cil links to Rfam database...	0.00	0.00	0.00	0	13360	6	0	6	0	35
RFA_00620	Telomerase-cil links to Rfam database...	0.00	0.00	0.00	0	21941	4	0	4	0	39
RFA_00621	RNase_MRP links to Rfam database...	0.00	0.00	0.00	0	46359	1	0	1	0	76
RFA_00623	RNase_MRP links to Rfam database...	0.00	0.00	0.00	0	43955	1	0	1	0	78
RFA_00624	RNase_MRP links to Rfam database...	0.00	0.00	0.00	0	30135	0	0	0	0	61
RFA_00626	rne5 links to Rfam database...	0.90	0.80	1.00	70	56546	12	0	0	12	17
RFA_00627	rne5 links to Rfam database...	0.90	0.82	0.99	71	56881	11	0	1	10	16
RFA_00628	rne5 links to Rfam database...	0.89	0.81	0.97	70	57219	12	0	2	10	16
RFA_00630	rne5 links to Rfam database...	0.85	0.75	0.97	65	56886	11	0	2	9	22
RFA_00632	HDV_ribozyme links to Rfam database...	0.47	0.39	0.58	11	4076	8	3	5	0	17
RFA_00636	HDV_ribozyme links to Rfam database...	0.62	0.54	0.71	15	3984	6	3	3	0	13
RFA_00639	7SK links to Rfam database...	0.59	0.48	0.72	42	54557	30	3	13	14	45
RFA_00642	Vimentin3 links to Rfam database...	0.31	0.22	0.44	4	2917	5	0	5	0	14
RFA_00643	Vimentin3 links to Rfam database...	0.21	0.17	0.27	3	2200	8	0	8	0	15
RFA_00644	Vimentin3 links to Rfam database...	0.36	0.33	0.40	6	2686	9	1	8	0	12
RFA_00645	Vimentin3 links to Rfam database...	0.31	0.28	0.36	5	2401	9	1	8	0	13
RFA_00649	Vimentin3 links to Rfam database...	0.37	0.33	0.43	6	2131	8	0	8	0	12
RFA_00651	Vimentin3 links to Rfam database...	0.32	0.28	0.38	5	2067	8	0	8	0	13
RFA_00653	Vimentin3 links to Rfam database...	0.36	0.33	0.40	6	2130	9	1	8	0	12
RFA_00654	Vimentin3 links to Rfam database...	0.35	0.28	0.45	5	2404	6	0	6	0	13
RFA_00658	Hammerhead_1 links to Rfam database...	0.64	0.57	0.73	8	1117	4	0	3	1	6
RFA_00659	Hammerhead_1 links to Rfam database...	0.35	0.29	0.44	4	1119	6	0	5	1	10
RFA_00664	Hammerhead_1 links to Rfam database...	0.59	0.50	0.70	7	980	4	0	3	1	7
RFA_00667	Hammerhead_1 links to Rfam database...	0.64	0.57	0.73	8	979	4	0	3	1	6
RFA_00668	Hammerhead_1 links to Rfam database...	0.71	0.57	0.89	8	981	1	0	1	0	6
RFA_00672	Hammerhead_1 links to Rfam database...	0.61	0.54	0.70	7	893	3	0	3	0	6
RFA_00673	Hammerhead_1 links to Rfam database...	0.42	0.36	0.50	5	1118	6	0	5	1	9
RFA_00674	Hammerhead_1 links to Rfam database...	0.69	0.64	0.75	9	1116	4	0	3	1	5
RFA_00675	Hammerhead_1 links to Rfam database...	0.62	0.50	0.78	7	981	3	0	2	1	7
RFA_00677	Hammerhead_1 links to Rfam database...	0.72	0.64	0.82	9	979	2	0	2	0	5
RFA_00678	Hammerhead_1 links to Rfam database...	0.43	0.29	0.67	4	940	3	0	2	1	10
RFA_00680	Hammerhead_1 links to Rfam database...	0.69	0.64	0.75	9	1116	4	0	3	1	5
RFA_00684	Hammerhead_1 links to Rfam database...	0.80	0.64	1.00	9	981	1	0	0	1	5
RFA_00685	Hammerhead_1 links to Rfam database...	0.64	0.57	0.73	8	979	4	0	3	1	6
RFA_00695	Hammerhead_1 links to Rfam database...	0.31	0.14	0.67	2	7018	2	0	1	1	12
RFA_00703	Hammerhead_1 links to Rfam database...	0.54	0.36	0.83	5	4272	1	0	1	0	9
RFA_00704	Hammerhead_1 links to Rfam database...	0.35	0.29	0.44	4	981	6	0	5	1	10
RFA_00705	Hammerhead_1 links to Rfam database...	0.80	0.64	1.00	9	1026	1	0	0	1	5
RFA_00706	Hammerhead_1 links to Rfam database...	0.56	0.43	0.75	6	1027	3	0	2	1	8
RFA_00707	Hammerhead_1 links to Rfam database...	0.67	0.57	0.80	8	1025	3	0	2	1	6
RFA_00708	Hammerhead_1 links to Rfam database...	0.75	0.57	1.00	8	1027	1	0	0	1	6
RFA_00709	Hammerhead_1 links to Rfam database...	0.53	0.43	0.67	6	981	3	0	3	0	8
RFA_00710	Hammerhead_1 links to Rfam database...	0.43	0.29	0.67	4	984	2	0	2	0	10
RFA_00711	Hammerhead_1 links to Rfam database...	0.35	0.21	0.60	3	1030	3	0	2	1	11
RFA_00715	Hammerhead_1 links to Rfam database...	0.66	0.50	0.88	7	938	2	0	1	1	7
RFA_00716	Hammerhead_1 links to Rfam database...	0.56	0.43	0.75	6	938	3	0	2	1	8
RFA_00717	Hammerhead_1 links to Rfam database...	0.50	0.36	0.71	5	896	2	0	2	0	9
RFA_00730	s2m links to Rfam database...	0.91	0.83	1.00	10	893	1	0	0	1	2
RFA_00731	s2m links to Rfam database...	0.91	0.83	1.00	10	893	1	0	0	1	2
RFA_00733	s2m links to Rfam database...	0.91	0.83	1.00	10	893	1	0	0	1	2
RFA_00734	s2m links to Rfam database...	0.91	0.83	1.00	10	893	0	0	0	0	2
RFA_00736	s2m links to Rfam database...	0.91	0.83	1.00	10	893	1	0	0	1	2
RFA_00737	s2m links to Rfam database...	0.91	0.83	1.00	10	893	1	0	0	1	2
RFA_00745	s2m links to Rfam database...	0.91	0.83	1.00	10	936	1	0	0	1	2
RFA_00749	s2m links to Rfam database...	0.91	0.83	1.00	10	893	1	0	0	1	2
RFA_00758	s2m links to Rfam database...	0.86	0.75	1.00	9	894	0	0	0	0	3
RFA_00762	s2m links to Rfam database...	0.91	0.83	1.00	10	893	0	0	0	0	2
RFA_00763	s2m links to Rfam database...	0.91	0.83	1.00	10	893	1	0	0	1	2
RFA_00764	s2m links to Rfam database...	0.91	0.83	1.00	10	893	1	0	0	1	2
RFA_00765	s2m links to Rfam database...	0.91	0.83	1.00	10	893	1	0	0	1	2
RFA_00767	Corona_pk3 links to Rfam database...	0.19	0.17	0.23	3	1878	10	3	7	0	15
RFA_00768	Corona_pk3 links to Rfam database...	0.19	0.17	0.23	3	1878	10	3	7	0	15
RFA_00769	Corona_pk3 links to Rfam database...	0.59	0.56	0.63	10	1937	6	4	2	0	8
RFA_00770	Corona_pk3 links to Rfam database...	0.54	0.56	0.53	10	1997	9	6	3	0	8
RFA_00773	Corona_pk3 links to Rfam database...	0.50	0.50	0.50	9	1935	9	6	3	0	9
RFA_00779	Corona_pk3 links to Rfam database...	0.50	0.50	0.50	9	1935	9	6	3	0	9
RFA_00781	Gammaretro_CES links to Rfam database...	0.61	0.59	0.63	19	5020	12	2	9	1	13
RFA_00786	Gammaretro_CES links to Rfam database...	0.61	0.59	0.63	19	5020	12	2	9	1	13
RFA_00791	Gammaretro_CES links to Rfam database...	0.58	0.53	0.63	17	5124	11	2	8	1	15
RFA_00792	Gammaretro_CES links to Rfam database...	0.64	0.63	0.67	20	5020	11	2	8	1	12
RFA_00801	Gammaretro_CES links to Rfam database...	0.59	0.56	0.62	18	5021	12	2	9	1	14
RFA_00805	RNAIII links to Rfam database...	0.27	0.24	0.30	36	133267	84	12	71	1	114
RFA_00808	RydC links to Rfam database...	0.60	0.50	0.73	8	2005	4	0	3	1	8
RFA_00809	RydC links to Rfam database...	0.37	0.31	0.45	5	2134	7	0	6	1	11
RFA_00814	R2_retro_el links to Rfam database...	0.90	0.85	0.95	35	25163	11	0	2	9	6
RFA_00815	R2_retro_el links to Rfam database...	0.90	0.85	0.95	35	24494	10	0	2	8	6
RFA_00816	R2_retro_el links to Rfam database...	0.90	0.85	0.95	35	23183	8	0	2	6	6
RFA_00817	R2_retro_el links to Rfam database...	0.88	0.83	0.94	34	21909	7	0	2	5	7
RFA_00818	R2_retro_el links to Rfam database...	0.80	0.71	0.91	29	20269	10	0	3	7	12
RFA_00819	R2_retro_el links to Rfam database...	0.90	0.85	0.95	35	27929	13	0	2	11	6
RFA_00820	bicoid_3 links to Rfam database...	0.90	0.88	0.93	140	151374	29	1	10	18	20
RFA_00830	bicoid_3 links to Rfam database...	0.39	0.27	0.59	41	152558	37	3	26	8	113
SPR_00020	tRNA links to Rfam database...	0.00	0.00	0.00	0	2696	5	0	5	0	20
SPR_00023	tRNA links to Rfam database...	0.00	0.00	0.00	0	2846	5	0	4	1	21
SPR_00137	tRNA links to Rfam database...	0.00	0.00	0.00	0	2924	2	0	2	0	21
SPR_00273	tRNA links to Rfam database...	0.00	0.00	0.00	0	2846	4	0	4	0	21
SPR_00277	tRNA links to Rfam database...	0.00	0.00	0.00	0	2923	4	0	3	1	21
SPR_00394	tRNA links to Rfam database...	0.00	0.00	0.00	0	3649	7	0	6	1	21
SPR_00402	tRNA links to Rfam database...	0.00	0.00	0.00	0	2552	4	0	4	0	21
SPR_00721	tRNA links to Rfam database...	0.00	0.00	0.00	0	2923	3	0	3	0	21
SPR_00816	tRNA links to Rfam database...	0.00	0.00	0.00	0	3484	2	0	2	0	20
SPR_01157	tRNA links to Rfam database...	0.00	0.00	0.00	0	2774	1	0	1	0	21
SRP_00001	Bacteria_large_SRP links to Rfam database...	0.63	0.50	0.80	20	6761	5	1	4	0	20
SRP_00002	Metazoa_SRP links to Rfam database...	0.51	0.35	0.75	36	45102	13	0	12	1	66
SRP_00006	Metazoa_SRP links to Rfam database...	0.51	0.36	0.72	36	45703	15	0	14	1	65
SRP_00008	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	2921	5	1	4	0	25
SRP_00009	Plant_SRP links to Rfam database...	0.09	0.06	0.15	6	46626	34	1	32	1	96
SRP_00011	Plant_SRP links to Rfam database...	0.45	0.33	0.63	34	46306	21	1	19	1	70
SRP_00012	Plant_SRP links to Rfam database...	0.11	0.07	0.17	7	46319	35	2	32	1	94
SRP_00015	Plant_SRP links to Rfam database...	0.11	0.07	0.18	7	46320	34	1	32	1	92
SRP_00016	Archaea_SRP links to Rfam database...	0.58	0.41	0.82	45	47840	11	0	10	1	64
SRP_00018	Fungi_SRP links to Rfam database...	0.00	0.00	0.00	0	38497	6	1	5	0	81
SRP_00019	Fungi_SRP links to Rfam database...	0.00	0.00	0.00	0	36042	4	3	1	0	91
SRP_00020	Bacteria_small_SRP links to Rfam database...	0.38	0.24	0.62	8	5552	5	0	5	0	25
SRP_00024	Bacteria_large_SRP links to Rfam database...	0.53	0.45	0.64	39	37614	23	4	18	1	48
SRP_00026	Bacteria_large_SRP links to Rfam database...	0.60	0.55	0.67	48	36784	25	4	20	1	40
SRP_00027	Bacteria_large_SRP links to Rfam database...	0.59	0.53	0.66	46	37058	24	4	20	0	41
SRP_00030	Bacteria_large_SRP links to Rfam database...	0.64	0.58	0.71	51	36784	21	4	17	0	37
SRP_00031	Bacteria_large_SRP links to Rfam database...	0.63	0.57	0.70	51	36242	22	4	18	0	38
SRP_00037	Bacteria_large_SRP links to Rfam database...	0.66	0.60	0.73	52	36514	19	4	15	0	35
SRP_00038	Bacteria_small_SRP links to Rfam database...	0.35	0.21	0.58	7	5038	5	1	4	0	26
SRP_00040	Bacteria_small_SRP links to Rfam database...	0.24	0.16	0.36	5	5551	9	2	7	0	26
SRP_00042	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	3997	8	0	8	0	25
SRP_00043	Bacteria_small_SRP links to Rfam database...	0.53	0.38	0.73	11	5035	5	0	4	1	18
SRP_00044	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6095	11	1	9	1	32
SRP_00046	Bacteria_small_SRP links to Rfam database...	0.33	0.19	0.60	6	4743	4	1	3	0	26
SRP_00050	Metazoa_SRP links to Rfam database...	0.56	0.43	0.72	43	44790	17	0	17	0	56
SRP_00051	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	5448	12	1	11	0	30
SRP_00053	Metazoa_SRP links to Rfam database...	0.17	0.12	0.25	11	45106	33	2	31	0	83
SRP_00054	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	5555	10	1	9	0	32
SRP_00056	Bacteria_small_SRP links to Rfam database...	0.04	0.03	0.07	1	6426	14	3	11	0	36
SRP_00057	Bacteria_small_SRP links to Rfam database...	0.21	0.11	0.40	4	6318	6	0	6	0	31
SRP_00058	Bacteria_small_SRP links to Rfam database...	0.31	0.18	0.55	6	5767	6	0	5	1	28
SRP_00060	Metazoa_SRP links to Rfam database...	0.42	0.28	0.64	28	44507	16	0	16	0	72
SRP_00061	Metazoa_SRP links to Rfam database...	0.44	0.31	0.62	31	44800	19	1	18	0	69
SRP_00066	Metazoa_SRP links to Rfam database...	0.54	0.41	0.72	41	45394	16	0	16	0	59
SRP_00067	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	5768	10	0	10	0	38
SRP_00069	Fungi_SRP links to Rfam database...	0.10	0.04	0.30	3	34443	9	0	7	2	82
SRP_00070	Fungi_SRP links to Rfam database...	0.14	0.05	0.40	6	126741	11	5	4	2	115
SRP_00072	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6320	8	4	4	0	29
SRP_00073	Fungi_SRP links to Rfam database...	0.12	0.04	0.33	3	39051	8	2	4	2	68
SRP_00074	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6548	7	1	6	0	29
SRP_00075	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	5557	9	1	7	1	34
SRP_00077	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6660	10	1	9	0	37
SRP_00079	Plant_SRP links to Rfam database...	0.10	0.06	0.17	5	41875	26	2	23	1	83
SRP_00081	Bacteria_small_SRP links to Rfam database...	0.29	0.19	0.43	6	5551	8	1	7	0	25
SRP_00084	Bacteria_small_SRP links to Rfam database...	0.34	0.21	0.58	7	5448	5	1	4	0	27
SRP_00085	Plant_SRP links to Rfam database...	0.47	0.35	0.65	35	45397	21	2	17	2	66
SRP_00086	Metazoa_SRP links to Rfam database...	0.52	0.40	0.69	40	44195	18	0	18	0	60
SRP_00087	Fungi_SRP links to Rfam database...	0.25	0.10	0.60	6	37391	6	1	3	2	52
SRP_00088	Bacteria_large_SRP links to Rfam database...	0.56	0.47	0.67	42	34128	21	4	17	0	47
SRP_00089	Bacteria_large_SRP links to Rfam database...	0.61	0.50	0.74	45	35717	16	3	13	0	45
SRP_00090	Bacteria_large_SRP links to Rfam database...	0.65	0.58	0.73	52	35440	20	3	16	1	38
SRP_00091	Fungi_SRP links to Rfam database...	0.09	0.02	0.40	2	52970	5	0	3	2	93
SRP_00094	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	4089	6	1	5	0	24
SRP_00095	Bacteria_small_SRP links to Rfam database...	0.57	0.44	0.73	11	3990	4	3	1	0	14
SRP_00098	Bacteria_small_SRP links to Rfam database...	0.04	0.03	0.08	1	6429	11	0	11	0	36
SRP_00099	Plant_SRP links to Rfam database...	0.08	0.04	0.14	4	44821	26	1	24	1	91
SRP_00102	Metazoa_SRP links to Rfam database...	0.57	0.42	0.78	42	44497	12	0	12	0	59
SRP_00103	Metazoa_SRP links to Rfam database...	0.56	0.42	0.74	43	45393	15	0	15	0	59
SRP_00104	Fungi_SRP links to Rfam database...	0.09	0.04	0.20	3	34438	14	0	12	2	66
SRP_00105	Bacteria_small_SRP links to Rfam database...	0.34	0.21	0.58	7	5553	5	1	4	0	27
SRP_00106	Bacteria_large_SRP links to Rfam database...	0.61	0.60	0.63	15	5229	10	2	7	1	10
SRP_00107	Bacteria_small_SRP links to Rfam database...	0.43	0.32	0.60	6	3645	4	0	4	0	13
SRP_00117	Metazoa_SRP links to Rfam database...	0.57	0.39	0.83	40	45403	9	0	8	1	62
SRP_00121	Bacteria_small_SRP links to Rfam database...	0.60	0.36	1.00	9	4269	0	0	0	0	16
SRP_00123	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	36569	16	1	15	0	91
SRP_00124	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	37109	20	2	17	1	85
SRP_00127	Fungi_SRP links to Rfam database...	0.07	0.02	0.29	2	72383	7	0	5	2	117
SRP_00128	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6778	8	2	6	0	36
SRP_00130	Archaea_SRP links to Rfam database...	0.43	0.31	0.60	30	49720	22	2	18	2	67
SRP_00132	Bacteria_small_SRP links to Rfam database...	0.32	0.21	0.50	6	4839	6	2	4	0	23
SRP_00134	Bacteria_large_SRP links to Rfam database...	0.65	0.66	0.66	19	5966	11	0	10	1	10
SRP_00136	Fungi_SRP links to Rfam database...	0.10	0.04	0.25	3	44241	11	1	8	2	68
SRP_00137	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	4178	8	1	7	0	25
SRP_00141	Bacteria_small_SRP links to Rfam database...	0.26	0.15	0.46	6	6315	7	0	7	0	35
SRP_00142	Archaea_SRP links to Rfam database...	0.55	0.42	0.74	39	46003	17	0	14	3	54
SRP_00143	Archaea_SRP links to Rfam database...	0.56	0.45	0.70	45	49706	20	0	19	1	56
SRP_00144	Archaea_SRP links to Rfam database...	0.55	0.43	0.70	40	46608	20	1	16	3	54
SRP_00145	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6315	13	0	13	0	40
SRP_00146	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	5246	7	1	6	0	36
SRP_00148	Fungi_SRP links to Rfam database...	0.09	0.02	0.33	2	50080	6	1	3	2	85
SRP_00152	Plant_SRP links to Rfam database...	0.58	0.39	0.87	40	45707	7	0	6	1	63
SRP_00153	Plant_SRP links to Rfam database...	0.52	0.36	0.74	39	46918	16	0	14	2	68
SRP_00157	Fungi_SRP links to Rfam database...	0.10	0.04	0.25	3	44241	11	2	7	2	69
SRP_00158	Fungi_SRP links to Rfam database...	0.13	0.02	1.00	2	124249	1	0	0	1	113
SRP_00160	Fungi_SRP links to Rfam database...	0.08	0.02	0.25	3	86308	9	3	6	0	127
SRP_00161	Bacteria_small_SRP links to Rfam database...	0.41	0.32	0.54	7	2837	6	0	6	0	15
SRP_00162	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	2921	5	4	1	0	23
SRP_00163	Bacteria_small_SRP links to Rfam database...	0.43	0.27	0.70	7	3476	3	0	3	0	19
SRP_00164	Bacteria_small_SRP links to Rfam database...	0.72	0.60	0.88	21	6879	4	1	2	1	14
SRP_00170	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	4091	4	0	4	0	25
SRP_00171	Metazoa_SRP links to Rfam database...	0.53	0.40	0.70	35	45401	15	0	15	0	53
SRP_00173	Bacteria_large_SRP links to Rfam database...	0.53	0.44	0.63	40	38163	25	4	19	2	50
SRP_00174	Bacteria_large_SRP links to Rfam database...	0.44	0.31	0.63	27	38738	16	0	16	0	59
SRP_00175	Fungi_SRP links to Rfam database...	0.12	0.04	0.38	3	44543	7	2	3	2	81
SRP_00178	Plant_SRP links to Rfam database...	0.51	0.36	0.71	37	45701	16	0	15	1	65
SRP_00179	Plant_SRP links to Rfam database...	0.50	0.35	0.73	37	46005	15	0	14	1	68
SRP_00181	Plant_SRP links to Rfam database...	0.52	0.35	0.77	36	46009	12	0	11	1	66
SRP_00182	Plant_SRP links to Rfam database...	0.57	0.41	0.79	41	46004	12	1	10	1	60
SRP_00184	Plant_SRP links to Rfam database...	0.51	0.36	0.73	36	46007	14	0	13	1	64
SRP_00188	Plant_SRP links to Rfam database...	0.65	0.52	0.82	41	31075	10	0	9	1	38
SRP_00194	Bacteria_small_SRP links to Rfam database...	0.16	0.10	0.29	2	3233	5	2	3	0	19
SRP_00197	Archaea_SRP links to Rfam database...	0.51	0.37	0.73	37	49404	15	3	11	1	64
SRP_00198	Archaea_SRP links to Rfam database...	0.52	0.39	0.70	40	50983	20	2	15	3	63
SRP_00199	Archaea_SRP links to Rfam database...	0.48	0.37	0.63	39	50978	24	0	23	1	66
SRP_00200	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6888	15	1	14	0	36
SRP_00201	Archaea_SRP links to Rfam database...	0.51	0.39	0.68	43	47832	21	0	20	1	68
SRP_00202	Archaea_SRP links to Rfam database...	0.46	0.36	0.58	42	54213	31	2	28	1	75
SRP_00203	Archaea_SRP links to Rfam database...	0.41	0.31	0.54	33	48767	30	1	27	2	72
SRP_00204	Archaea_SRP links to Rfam database...	0.56	0.42	0.74	43	49083	17	1	14	2	59
SRP_00206	Archaea_SRP links to Rfam database...	0.55	0.41	0.73	44	47835	17	0	16	1	64
SRP_00208	Archaea_SRP links to Rfam database...	0.44	0.32	0.60	32	46612	21	2	19	0	69
SRP_00209	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	4649	7	1	6	0	27
SRP_00213	Bacteria_small_SRP links to Rfam database...	0.39	0.28	0.54	7	4173	6	1	5	0	18
SRP_00215	Bacteria_small_SRP links to Rfam database...	0.44	0.28	0.70	7	3230	3	1	2	0	18
SRP_00216	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	3396	7	1	6	0	27
SRP_00217	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	3312	9	1	8	0	24
SRP_00219	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	3315	6	1	5	0	23
SRP_00222	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	3074	7	1	6	0	25
SRP_00227	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	5143	8	0	8	0	31
SRP_00228	Metazoa_SRP links to Rfam database...	0.56	0.42	0.75	40	45398	14	1	12	1	55
SRP_00229	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	5246	7	2	5	0	27
SRP_00230	Fungi_SRP links to Rfam database...	0.08	0.03	0.18	3	39604	16	0	14	2	87
SRP_00231	Bacteria_small_SRP links to Rfam database...	0.46	0.29	0.71	10	5446	4	0	4	0	24
SRP_00233	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	5141	10	1	9	0	33
SRP_00234	Bacteria_large_SRP links to Rfam database...	0.59	0.53	0.66	46	36245	27	5	19	3	40
SRP_00239	Plant_SRP links to Rfam database...	0.39	0.31	0.50	29	50345	30	2	27	1	64
SRP_00240	Plant_SRP links to Rfam database...	0.47	0.37	0.60	38	48142	27	2	23	2	64
SRP_00241	Plant_SRP links to Rfam database...	0.00	0.00	0.00	0	46025	31	2	29	0	82
SRP_00243	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	5140	11	1	10	0	31
SRP_00244	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6891	12	1	11	0	39
SRP_00247	Metazoa_SRP links to Rfam database...	0.50	0.38	0.67	33	47229	19	2	14	3	54
SRP_00250	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6775	11	2	9	0	36
SRP_00251	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	7011	10	1	9	0	36
SRP_00252	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	49113	28	3	25	0	89
SRP_00253	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	49433	22	4	18	0	90
SRP_00254	Fungi_SRP links to Rfam database...	0.00	0.00	0.00	0	32382	3	3	0	0	61
SRP_00255	Archaea_SRP links to Rfam database...	0.52	0.38	0.71	36	47535	17	2	13	2	58
SRP_00257	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	51009	31	2	29	0	108
SRP_00260	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	47877	18	1	17	0	100
SRP_00265	Fungi_SRP links to Rfam database...	0.00	0.00	0.00	0	41319	9	1	8	0	73
SRP_00266	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	4647	9	1	8	0	29
SRP_00267	Metazoa_SRP links to Rfam database...	0.17	0.11	0.26	11	44509	32	0	31	1	85
SRP_00268	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	4180	6	1	5	0	27
SRP_00269	Bacteria_small_SRP links to Rfam database...	0.29	0.18	0.46	6	5037	7	0	7	0	27
SRP_00270	Bacteria_small_SRP links to Rfam database...	0.28	0.16	0.50	5	4646	5	0	5	0	26
SRP_00271	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	3235	5	0	5	0	24
SRP_00273	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6778	8	1	7	0	40
SRP_00274	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6892	11	1	10	0	38
SRP_00276	Archaea_SRP links to Rfam database...	0.62	0.48	0.79	53	50654	15	1	13	1	57
SRP_00278	Archaea_SRP links to Rfam database...	0.48	0.35	0.65	37	45999	21	1	19	1	68
SRP_00282	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	43345	20	3	17	0	63
SRP_00285	Bacteria_small_SRP links to Rfam database...	0.33	0.20	0.55	6	3730	5	0	5	0	24
SRP_00286	Fungi_SRP links to Rfam database...	0.07	0.02	0.21	4	137007	18	0	15	3	170
SRP_00287	Fungi_SRP links to Rfam database...	0.07	0.02	0.25	3	141766	11	1	8	2	159
SRP_00290	Fungi_SRP links to Rfam database...	0.00	0.00	0.00	0	100557	19	1	18	0	135
SRP_00292	Fungi_SRP links to Rfam database...	0.05	0.02	0.14	3	137529	20	1	17	2	170
SRP_00294	Fungi_SRP links to Rfam database...	0.05	0.02	0.13	3	129263	24	1	19	4	164
SRP_00295	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6894	9	1	8	0	38
SRP_00299	Metazoa_SRP links to Rfam database...	0.48	0.34	0.67	34	44202	17	0	17	0	65
SRP_00300	Metazoa_SRP links to Rfam database...	0.46	0.35	0.61	33	44199	21	0	21	0	61
SRP_00301	Fungi_SRP links to Rfam database...	0.10	0.02	0.40	2	32635	5	0	3	2	84
SRP_00302	Fungi_SRP links to Rfam database...	0.10	0.04	0.25	3	41604	11	3	6	2	78
SRP_00303	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6665	5	1	4	0	32
SRP_00308	Bacteria_large_SRP links to Rfam database...	0.62	0.55	0.72	48	36248	19	4	15	0	40
SRP_00310	Bacteria_small_SRP links to Rfam database...	0.60	0.43	0.83	10	2914	3	0	2	1	13
SRP_00312	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	4178	8	0	8	0	27
SRP_00315	Bacteria_small_SRP links to Rfam database...	0.63	0.43	0.91	10	2915	1	0	1	0	13
SRP_00317	Metazoa_SRP links to Rfam database...	0.47	0.36	0.63	35	45094	21	0	21	0	63
SRP_00318	Bacteria_small_SRP links to Rfam database...	0.69	0.48	1.00	11	2992	0	0	0	0	12
SRP_00321	Archaea_SRP links to Rfam database...	0.37	0.25	0.56	27	47538	22	1	20	1	81
SRP_00322	Archaea_SRP links to Rfam database...	0.47	0.34	0.66	37	48460	20	2	17	1	72
SRP_00323	Archaea_SRP links to Rfam database...	0.53	0.36	0.76	39	47227	13	0	12	1	68
SRP_00324	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	5344	12	2	10	0	29
SRP_00325	Bacteria_small_SRP links to Rfam database...	0.36	0.21	0.64	7	4360	4	0	4	0	26
SRP_00326	Bacteria_small_SRP links to Rfam database...	0.30	0.16	0.56	5	5041	4	0	4	0	26
SRP_00328	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	39594	27	2	25	0	85
SRP_00329	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	39885	18	1	17	0	85
SRP_00330	Archaea_SRP links to Rfam database...	0.38	0.25	0.57	24	50044	20	1	17	2	71
SRP_00331	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	37656	19	2	17	0	87
SRP_00332	Archaea_SRP links to Rfam database...	0.70	0.58	0.86	61	50332	11	0	10	1	45
SRP_00333	Bacteria_small_SRP links to Rfam database...	0.33	0.21	0.54	7	5138	6	0	6	0	27
SRP_00335	Bacteria_large_SRP links to Rfam database...	0.42	0.41	0.43	16	35208	34	11	10	13	23
SRP_00337	Bacteria_large_SRP links to Rfam database...	0.58	0.49	0.68	45	35445	21	4	17	0	46
SRP_00338	Bacteria_small_SRP links to Rfam database...	0.51	0.33	0.80	12	5445	4	0	3	1	24
SRP_00339	Archaea_SRP links to Rfam database...	0.36	0.26	0.50	24	44503	25	1	23	1	70
SRP_00340	Metazoa_SRP links to Rfam database...	0.21	0.13	0.34	11	41296	23	1	20	2	71
SRP_00341	Bacteria_small_SRP links to Rfam database...	0.35	0.23	0.54	7	4740	6	1	5	0	24
SRP_00342	Bacteria_small_SRP links to Rfam database...	0.38	0.24	0.60	6	3995	4	0	4	0	19
SRP_00347	Metazoa_SRP links to Rfam database...	0.40	0.28	0.57	27	46618	21	1	19	1	69
SRP_00350	Bacteria_small_SRP links to Rfam database...	0.19	0.07	0.50	2	3912	2	0	2	0	25
SRP_00356	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	5043	7	1	6	0	30
SRP_00357	Bacteria_small_SRP links to Rfam database...	0.46	0.31	0.69	11	5340	5	0	5	0	25
SRP_00358	Bacteria_small_SRP links to Rfam database...	0.49	0.29	0.83	10	6316	2	1	1	0	25
SRP_00361	Plant_SRP links to Rfam database...	0.09	0.04	0.19	4	41884	18	1	16	1	86
SRP_00363	Bacteria_small_SRP links to Rfam database...	0.52	0.37	0.73	11	4738	4	0	4	0	19
SRP_00365	Bacteria_small_SRP links to Rfam database...	0.45	0.26	0.78	7	3394	2	0	2	0	20
SRP_00367	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6774	12	0	12	0	35
SRP_00368	Metazoa_SRP links to Rfam database...	0.57	0.45	0.73	44	43896	16	0	16	0	54
SRP_00369	Bacteria_small_SRP links to Rfam database...	0.30	0.17	0.55	6	5767	5	0	5	0	29
SRP_00371	Fungi_SRP links to Rfam database...	0.00	0.00	0.00	0	36310	5	0	5	0	82
SRP_00382	Fungi_SRP links to Rfam database...	0.06	0.02	0.18	3	141761	16	0	14	2	167
SRP_00383	Bacteria_small_SRP links to Rfam database...	0.54	0.42	0.71	10	3226	4	0	4	0	14
TMR_00173	tmRNA links to Rfam database...	0.30	0.17	0.54	7	42182	6	2	4	0	35
TMR_00357	tmRNA links to Rfam database...	0.25	0.09	0.73	8	83017	3	0	3	0	84
TMR_00601	tmRNA links to Rfam database...	0.30	0.19	0.47	8	58979	9	2	7	0	34
TMR_00696	tmRNA links to Rfam database...	0.24	0.07	0.80	8	85068	2	0	2	0	106

^top

Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.

Table of contents:

Overview

Performance plots

Performance of ProbKnot - scored higher in this pairwise comparison

1. Total counts & total scores for ProbKnot

2. Individual counts for ProbKnot [ download as .csv ]

Performance of RSpredict(seed) - scored lower in this pairwise comparison

1. Total counts & total scores for RSpredict(seed)

2. Individual counts for RSpredict(seed) [ download as .csv ]