CompaRNA - on-line benchmarks of RNA structure prediction methods

Laboratory of Structural Bioinformatics @ Adam Mickiewicz University in Poznan

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Overview

Metric	RNASLOpt		NanoFolder
MCC	0.479	>	0.205
Average MCC ± 95% Confidence Intervals	0.523 ± 0.035	>	0.280 ± 0.032
Sensitivity	0.446	>	0.239
Positive Predictive Value	0.517	>	0.178
Total TP	6277	>	3369
Total TN	6773793	>	6767045
Total FP	6411	<	16042
Total FP CONTRA	727	<	2726
Total FP INCONS	5147	<	12804
Total FP COMP	537	>	512
Total FN	7803	<	10711
P-value	3.56938820447e-08

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Performance plots

Comparison of performance of RNASLOpt and NanoFolder. Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data (individual counts for RNASLOpt and NanoFolder).
Average Matthews Correlation Coefficients (MCC) with 95% confidence intervals (CIs) were plotted for different RNA families, for which at least 3 members were present in the benchmarking dataset. 'n' denotes the number of MCCs used to calculate the average and CI. See tables below for raw data (individual counts for RNASLOpt and NanoFolder).
Comparison of average Matthews Correlation Coefficients (MCCs) for RNASLOpt and NanoFolder. The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data (individual counts for RNASLOpt and NanoFolder).

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Performance of RNASLOpt - scored higher in this pairwise comparison

1. Total counts & total scores for RNASLOpt

Total Base Pair Counts
Total TP	6277
Total TN	6773793
Total FP	6411
Total FP CONTRA	727
Total FP INCONS	5147
Total FP COMP	537
Total FN	7803

Total Scores
MCC	0.479
Average MCC ± 95% Confidence Intervals	0.523 ± 0.035
Sensitivity	0.446
Positive Predictive Value	0.517
Nr of predictions	233

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2. Individual counts for RNASLOpt [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00017	RNaseP_nuc links to Rfam database...	0.24	0.25	0.24	16	50973	67	12	39	16	48
ASE_00083	RNaseP_bact_a links to Rfam database...	0.52	0.47	0.58	52	62392	43	5	32	6	58
ASE_00122	RNaseP_bact_a links to Rfam database...	0.58	0.53	0.63	47	43290	28	1	27	0	41
ASE_00185	RNaseP_bact_a links to Rfam database...	0.65	0.59	0.71	76	73429	31	0	31	0	52
ASE_00190	RNaseP_bact_b links to Rfam database...	0.52	0.48	0.57	43	45375	39	1	32	6	47
ASE_00191	RNaseP_arch links to Rfam database...	0.58	0.56	0.61	34	29590	26	1	21	4	27
ASE_00196	RNaseP_arch links to Rfam database...	0.41	0.37	0.46	28	31565	36	2	31	3	47
ASE_00221	RNaseP_bact_a links to Rfam database...	0.31	0.26	0.36	31	64535	54	1	53	0	86
ASE_00227	RNaseP_bact_a links to Rfam database...	0.33	0.29	0.38	38	78903	62	6	56	0	95
ASE_00228	RNaseP_bact_a links to Rfam database...	0.42	0.40	0.45	34	46895	44	8	34	2	52
ASE_00229	RNaseP_bact_a links to Rfam database...	0.67	0.62	0.73	54	42412	22	2	18	2	33
ASE_00231	RNaseP_bact_a links to Rfam database...	0.71	0.66	0.76	63	47812	21	1	19	1	33
ASE_00234	RNaseP_bact_a links to Rfam database...	0.43	0.37	0.49	48	75368	52	1	49	2	81
ASE_00238	RNaseP_bact_a links to Rfam database...	0.39	0.38	0.41	43	64155	65	4	59	2	71
ASE_00248	RNaseP_bact_a links to Rfam database...	0.31	0.28	0.34	32	62388	62	1	60	1	82
ASE_00250	RNaseP_bact_a links to Rfam database...	0.64	0.59	0.70	77	78893	36	5	28	3	54
ASE_00254	RNaseP_bact_a links to Rfam database...	0.26	0.24	0.29	20	36787	54	3	46	5	62
ASE_00255	RNaseP_bact_a links to Rfam database...	0.51	0.47	0.56	61	74583	47	5	42	0	69
ASE_00257	RNaseP_bact_a links to Rfam database...	0.52	0.45	0.59	44	50965	31	3	28	0	53
ASE_00267	RNaseP_bact_a links to Rfam database...	0.24	0.22	0.27	19	45080	57	5	46	6	69
ASE_00270	RNaseP_bact_a links to Rfam database...	0.43	0.40	0.46	51	72280	59	7	52	0	77
ASE_00274	RNaseP_bact_a links to Rfam database...	0.25	0.22	0.28	23	55528	60	4	56	0	80
ASE_00277	RNaseP_bact_a links to Rfam database...	0.28	0.25	0.32	23	48132	50	8	42	0	68
ASE_00279	RNaseP_bact_a links to Rfam database...	0.18	0.16	0.21	16	53226	60	3	56	1	85
ASE_00285	RNaseP_bact_a links to Rfam database...	0.62	0.54	0.71	66	68913	33	0	27	6	56
ASE_00287	RNaseP_bact_a links to Rfam database...	0.28	0.23	0.33	24	54873	49	3	46	0	79
ASE_00295	RNaseP_bact_a links to Rfam database...	0.52	0.46	0.58	60	73817	45	9	34	2	71
ASE_00298	RNaseP_bact_a links to Rfam database...	0.39	0.35	0.42	40	67433	56	5	50	1	73
ASE_00321	RNaseP_bact_b links to Rfam database...	0.59	0.59	0.60	52	54528	39	3	32	4	36
ASE_00335	RNaseP_bact_b links to Rfam database...	0.55	0.51	0.59	59	75366	48	3	38	7	57
ASE_00340	RNaseP_bact_a links to Rfam database...	0.39	0.35	0.44	30	45988	38	7	31	0	55
ASE_00344	-	0.67	0.66	0.67	37	27206	30	1	17	12	19
ASE_00350	-	0.64	0.63	0.65	33	29595	39	1	17	21	19
ASE_00367	RNaseP_bact_a links to Rfam database...	0.46	0.42	0.50	36	42999	41	4	32	5	50
ASE_00370	RNaseP_bact_a links to Rfam database...	0.57	0.51	0.63	43	41837	26	1	24	1	41
ASE_00372	RNaseP_bact_a links to Rfam database...	0.46	0.44	0.47	44	51910	53	5	44	4	56
ASE_00375	RNaseP_bact_a links to Rfam database...	0.65	0.58	0.72	64	60289	26	2	23	1	46
ASE_00376	RNaseP_bact_a links to Rfam database...	0.54	0.49	0.59	51	56867	38	4	31	3	54
ASE_00377	RNaseP_bact_a links to Rfam database...	0.55	0.50	0.59	54	57539	42	1	36	5	53
ASE_00386	RNaseP_bact_a links to Rfam database...	0.51	0.48	0.55	46	50319	43	6	32	5	50
ASE_00393	RNaseP_bact_a links to Rfam database...	0.48	0.43	0.54	40	47821	41	3	31	7	53
ASE_00412	RNaseP_bact_a links to Rfam database...	0.36	0.33	0.38	35	58220	56	10	46	0	70
ASE_00413	RNaseP_bact_a links to Rfam database...	0.51	0.48	0.55	39	44480	36	2	30	4	42
ASE_00416	RNaseP_bact_a links to Rfam database...	0.49	0.45	0.54	57	77315	53	4	45	4	70
ASE_00417	RNaseP_arch links to Rfam database...	0.43	0.41	0.45	41	54523	53	4	47	2	59
ASE_00422	RNaseP_bact_a links to Rfam database...	0.79	0.72	0.86	68	46892	16	0	11	5	26
ASE_00427	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	40690	69	32	33	4	46
ASE_00428	RNaseP_bact_a links to Rfam database...	0.51	0.47	0.55	59	76529	51	3	45	3	66
ASE_00429	-	0.54	0.52	0.58	34	28144	26	3	22	1	32
ASE_00430	RNaseP_bact_a links to Rfam database...	0.78	0.70	0.87	68	46893	15	0	10	5	29
ASE_00434	RNaseP_bact_b links to Rfam database...	0.64	0.61	0.68	67	68167	39	9	22	8	43
ASE_00437	RNaseP_bact_a links to Rfam database...	0.40	0.36	0.45	48	79294	60	3	56	1	87
ASE_00451	RNaseP_bact_a links to Rfam database...	0.44	0.40	0.48	50	70772	55	3	51	1	75
ASE_00454	RNaseP_nuc links to Rfam database...	0.51	0.52	0.50	33	43299	51	3	30	18	30
CRW_00654	-	0.84	0.79	0.90	98	78101	14	1	10	3	26
CRW_00658	-	0.39	0.37	0.40	38	74597	58	9	47	2	64
CRW_00663	-	0.16	0.16	0.17	10	26046	55	4	46	5	51
CRW_00664	-	0.17	0.17	0.17	13	53551	71	8	56	7	65
CRW_00671	Intron_gpI links to Rfam database...	0.60	0.53	0.68	62	62744	32	2	27	3	55
CRW_00672	Intron_gpI links to Rfam database...	0.43	0.41	0.45	45	72291	57	6	48	3	66
CRW_00688	-	0.74	0.70	0.78	40	21894	12	1	10	1	17
CRW_00721	-	0.65	0.66	0.64	45	58583	51	7	18	26	23
CRW_01535	5S_rRNA links to Rfam database...	0.23	0.22	0.24	8	7107	25	3	22	0	29
CRW_01539	5S_rRNA links to Rfam database...	0.71	0.62	0.82	23	7112	7	0	5	2	14
CRW_01563	5S_rRNA links to Rfam database...	0.33	0.27	0.40	10	6878	15	3	12	0	27
CRW_01583	5S_rRNA links to Rfam database...	0.15	0.14	0.19	5	7113	22	4	18	0	32
CRW_01590	5S_rRNA links to Rfam database...	0.25	0.24	0.26	9	7105	26	3	23	0	28
CRW_01593	5S_rRNA links to Rfam database...	0.73	0.65	0.83	24	7111	6	0	5	1	13
CRW_01595	5S_rRNA links to Rfam database...	0.00	0.00	0.00	0	8485	31	5	25	1	37
CRW_01603	5S_rRNA links to Rfam database...	0.36	0.32	0.41	12	7111	17	2	15	0	25
CRW_01617	5S_rRNA links to Rfam database...	0.22	0.22	0.23	8	7105	27	3	24	0	29
CRW_01625	5S_rRNA links to Rfam database...	0.80	0.73	0.87	27	7109	5	0	4	1	10
PDB_00011	-	0.91	0.83	1.00	10	266	0	0	0	0	2
PDB_00017	-	0.77	0.60	1.00	9	694	0	0	0	0	6
PDB_00036	-	-0.01	0.00	0.00	0	3466	26	0	20	6	27
PDB_00070	tRNA links to Rfam database...	0.41	0.38	0.45	9	2830	12	0	11	1	15
PDB_00078	-	0.35	0.32	0.38	37	49673	60	6	54	0	78
PDB_00113	-	0.74	0.56	1.00	5	226	0	0	0	0	4
PDB_00119	-	0.95	0.90	1.00	9	244	0	0	0	0	1
PDB_00136	-	0.71	0.58	0.88	15	2398	2	0	2	0	11
PDB_00137	-	0.87	0.77	1.00	10	396	0	0	0	0	3
PDB_00160	-	0.94	0.89	1.00	8	268	0	0	0	0	1
PDB_00178	-	0.39	0.36	0.44	4	519	5	1	4	0	7
PDB_00221	-	0.66	0.44	1.00	4	249	0	0	0	0	5
PDB_00278	-	0.38	0.36	0.41	26	24912	38	3	35	0	46
PDB_00312	-	0.46	0.44	0.50	4	427	4	0	4	0	5
PDB_00326	-	0.74	0.61	0.89	17	3722	2	0	2	0	11
PDB_00341	-	0.52	0.44	0.64	7	692	4	0	4	0	9
PDB_00349	-	-0.01	0.00	0.00	0	936	10	0	10	0	14
PDB_00417	-	0.12	0.11	0.14	6	14154	38	4	32	2	50
PDB_00430	tRNA links to Rfam database...	0.58	0.52	0.65	13	3220	7	3	4	0	12
PDB_00527	-	-0.01	0.00	0.00	0	296	4	1	3	0	5
PDB_00565	-	0.54	0.48	0.62	24	8089	16	1	14	1	26
PDB_00570	-	0.90	0.82	1.00	18	2260	0	0	0	0	4
PDB_00571	tRNA links to Rfam database...	0.87	0.80	0.95	20	3300	1	1	0	0	5
PDB_00573	-	0.63	0.53	0.75	18	6646	10	0	6	4	16
PDB_00584	-	0.23	0.24	0.25	4	1469	12	0	12	0	13
PDB_00698	-	0.94	0.89	1.00	17	844	0	0	0	0	2
PDB_00701	-	0.32	0.30	0.33	33	45352	67	6	60	1	76
PDB_00725	-	0.89	0.80	1.00	12	583	0	0	0	0	3
PDB_00734	-	0.62	0.40	1.00	4	227	0	0	0	0	6
PDB_00823	-	-0.03	0.00	0.00	0	186	4	0	4	0	9
PDB_00828	Purine links to Rfam database...	0.88	0.78	1.00	21	2464	0	0	0	0	6
PDB_00851	-	0.45	0.39	0.53	16	4723	14	0	14	0	25
PDB_00890	-	-0.02	0.00	0.00	0	694	9	2	7	0	14
PDB_00917	-	0.44	0.42	0.47	40	35160	48	7	38	3	55
PDB_00923	-	1.00	1.00	1.00	6	184	0	0	0	0	0
PDB_00994	-	0.11	0.12	0.11	5	10541	40	5	34	1	37
PDB_01009	tRNA links to Rfam database...	0.90	0.90	0.90	19	2464	5	0	2	3	2
PDB_01051	Telomerase-cil links to Rfam database...	0.79	0.69	0.90	9	893	2	0	1	1	4
PDB_01074	-	-0.01	0.00	0.00	0	2746	29	3	26	0	25
PDB_01076	-	0.58	0.47	0.71	37	23384	22	1	14	7	42
PDB_01130	-	-0.01	0.00	0.00	0	1752	18	4	14	0	20
PDB_01199	-	-0.01	0.00	0.00	0	2133	12	2	10	0	24
PDB_01236	ykoK links to Rfam database...	0.62	0.52	0.74	28	11590	11	0	10	1	26
PDB_01275	-	0.35	0.31	0.40	22	18281	34	3	30	1	49
RFA_00416	Hammerhead_3 links to Rfam database...	0.77	0.60	1.00	9	1476	1	0	0	1	6
RFA_00434	Hammerhead_3 links to Rfam database...	0.77	0.60	1.00	9	1422	1	0	0	1	6
RFA_00436	Hammerhead_3 links to Rfam database...	0.77	0.60	1.00	9	1422	1	0	0	1	6
RFA_00442	Hammerhead_3 links to Rfam database...	0.77	0.60	1.00	9	1422	1	0	0	1	6
RFA_00446	Hammerhead_3 links to Rfam database...	0.77	0.60	1.00	9	1476	2	0	0	2	6
RFA_00604	Telomerase-cil links to Rfam database...	0.73	0.66	0.82	23	13502	12	4	1	7	12
RFA_00620	Telomerase-cil links to Rfam database...	0.66	0.64	0.68	25	21908	22	2	10	10	14
RFA_00664	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	980	11	0	10	1	14
RFA_00674	Hammerhead_1 links to Rfam database...	0.74	0.71	0.77	10	1115	4	0	3	1	4
RFA_00675	Hammerhead_1 links to Rfam database...	0.29	0.29	0.31	4	977	9	1	8	0	10
RFA_00677	Hammerhead_1 links to Rfam database...	0.74	0.71	0.77	10	977	5	0	3	2	4
RFA_00684	Hammerhead_1 links to Rfam database...	0.84	0.71	1.00	10	980	1	0	0	1	4
RFA_00703	Hammerhead_1 links to Rfam database...	0.41	0.43	0.40	6	4263	20	3	6	11	8
RFA_00716	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	939	7	0	7	0	14
RFA_00717	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	894	9	0	9	0	14
RFA_00730	s2m links to Rfam database...	0.64	0.42	1.00	5	898	1	0	0	1	7
RFA_00763	s2m links to Rfam database...	0.64	0.42	1.00	5	898	1	0	0	1	7
RFA_00765	s2m links to Rfam database...	0.64	0.42	1.00	5	898	1	0	0	1	7
RFA_00770	Corona_pk3 links to Rfam database...	0.47	0.39	0.58	7	2004	5	1	4	0	11
RFA_00773	Corona_pk3 links to Rfam database...	0.59	0.56	0.63	10	1937	6	1	5	0	8
RFA_00808	RydC links to Rfam database...	0.75	0.56	1.00	9	2007	0	0	0	0	7
RFA_00816	R2_retro_el links to Rfam database...	0.58	0.63	0.53	26	23171	26	13	10	3	15
SPR_00030	-	0.49	0.43	0.56	9	2469	8	0	7	1	12
SPR_00066	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00228	tRNA links to Rfam database...	0.47	0.50	0.45	10	3806	13	5	7	1	10
SPR_00314	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	2	0	0	2	0
SPR_00331	tRNA links to Rfam database...	0.92	0.85	1.00	17	2758	0	0	0	0	3
SPR_00333	tRNA links to Rfam database...	0.93	0.86	1.00	18	2757	0	0	0	0	3
SPR_00353	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00398	-	-0.01	0.00	0.00	0	2193	20	4	14	2	13
SPR_00452	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00456	tRNA links to Rfam database...	0.55	0.57	0.55	12	2828	12	2	8	2	9
SPR_00462	tRNA links to Rfam database...	0.89	0.79	1.00	15	2400	1	0	0	1	4
SPR_00476	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	0	0	0	0	0
SPR_00496	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	0	0	0	0	0
SPR_00497	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	0	0	0	0	0
SPR_00502	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00509	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00512	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00542	tRNA links to Rfam database...	0.31	0.33	0.29	7	3546	17	2	15	0	14
SPR_00557	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00832	-	0.64	0.67	0.63	10	1637	6	2	4	0	5
SPR_00868	tRNA links to Rfam database...	0.87	0.81	0.94	17	2908	2	0	1	1	4
SPR_00932	tRNA links to Rfam database...	0.87	0.81	0.94	17	2832	2	0	1	1	4
SPR_00957	tRNA links to Rfam database...	0.60	0.57	0.63	12	2984	9	0	7	2	9
SPR_01040	tRNA links to Rfam database...	0.87	0.81	0.94	17	2757	2	0	1	1	4
SPR_01143	tRNA links to Rfam database...	0.74	0.76	0.73	16	2534	6	3	3	0	5
SRP_00005	-	0.17	0.17	0.18	4	3983	19	1	17	1	20
SRP_00038	Bacteria_small_SRP links to Rfam database...	0.30	0.27	0.33	9	5023	18	0	18	0	24
SRP_00046	Bacteria_small_SRP links to Rfam database...	0.95	0.91	1.00	29	4724	1	0	0	1	3
SRP_00103	Metazoa_SRP links to Rfam database...	0.78	0.74	0.82	75	45360	16	1	15	0	27
SRP_00117	Metazoa_SRP links to Rfam database...	0.14	0.13	0.16	13	45369	70	3	66	1	89
SRP_00138	-	0.54	0.52	0.56	14	3980	13	2	9	2	13
SRP_00144	Archaea_SRP links to Rfam database...	0.04	0.04	0.05	4	46578	83	17	66	0	90
SRP_00170	Bacteria_small_SRP links to Rfam database...	0.53	0.52	0.54	13	4071	12	2	9	1	12
SRP_00173	Bacteria_large_SRP links to Rfam database...	0.64	0.59	0.70	53	38150	25	4	19	2	37
SRP_00193	-	0.19	0.19	0.20	7	6868	29	2	26	1	29
SRP_00194	Bacteria_small_SRP links to Rfam database...	0.35	0.33	0.37	7	3221	12	0	12	0	14
SRP_00197	Archaea_SRP links to Rfam database...	0.23	0.21	0.25	21	49370	64	9	55	0	80
SRP_00198	Archaea_SRP links to Rfam database...	0.41	0.38	0.45	39	50954	47	5	42	0	64
SRP_00200	Bacteria_small_SRP links to Rfam database...	0.83	0.72	0.96	26	6876	1	0	1	0	10
SRP_00216	Bacteria_small_SRP links to Rfam database...	0.88	0.85	0.92	23	3378	3	1	1	1	4
SRP_00229	Bacteria_small_SRP links to Rfam database...	0.37	0.37	0.37	10	5226	17	5	12	0	17
SRP_00233	Bacteria_small_SRP links to Rfam database...	0.46	0.42	0.50	14	5123	14	0	14	0	19
SRP_00234	Bacteria_large_SRP links to Rfam database...	0.66	0.60	0.71	52	36242	23	0	21	2	34
SRP_00243	Bacteria_small_SRP links to Rfam database...	0.90	0.81	1.00	25	5126	0	0	0	0	6
SRP_00244	Bacteria_small_SRP links to Rfam database...	0.56	0.51	0.63	20	6871	12	2	10	0	19
SRP_00266	Bacteria_small_SRP links to Rfam database...	0.42	0.34	0.53	10	4637	9	1	8	0	19
SRP_00267	Metazoa_SRP links to Rfam database...	0.54	0.49	0.59	47	44471	35	3	30	2	49
SRP_00269	Bacteria_small_SRP links to Rfam database...	0.43	0.42	0.44	14	5018	18	2	16	0	19
SRP_00273	Bacteria_small_SRP links to Rfam database...	0.95	0.90	1.00	36	6750	1	0	0	1	4
SRP_00276	Archaea_SRP links to Rfam database...	0.66	0.63	0.70	69	50622	31	7	23	1	41
SRP_00278	Archaea_SRP links to Rfam database...	0.68	0.65	0.72	68	45961	29	4	23	2	37
SRP_00285	Bacteria_small_SRP links to Rfam database...	0.87	0.77	1.00	23	3718	0	0	0	0	7
SRP_00303	Bacteria_small_SRP links to Rfam database...	0.63	0.59	0.68	19	6642	9	1	8	0	13
SRP_00308	Bacteria_large_SRP links to Rfam database...	0.14	0.14	0.15	12	36233	70	11	59	0	76
SRP_00317	Metazoa_SRP links to Rfam database...	0.20	0.19	0.21	19	45061	72	7	63	2	79
SRP_00321	Archaea_SRP links to Rfam database...	0.48	0.45	0.50	49	47488	51	5	44	2	59
SRP_00322	Archaea_SRP links to Rfam database...	0.57	0.54	0.61	59	48419	38	1	37	0	50
SRP_00332	Archaea_SRP links to Rfam database...	0.10	0.09	0.10	10	50305	88	5	83	0	96
SRP_00333	Bacteria_small_SRP links to Rfam database...	0.74	0.65	0.85	22	5125	4	1	3	0	12
SRP_00337	Bacteria_large_SRP links to Rfam database...	0.76	0.71	0.80	65	35430	17	2	14	1	26
SRP_00338	Bacteria_small_SRP links to Rfam database...	0.93	0.86	1.00	31	5429	0	0	0	0	5
SRP_00342	Bacteria_small_SRP links to Rfam database...	0.48	0.40	0.59	10	3988	7	1	6	0	15
SRP_00354	-	0.23	0.23	0.24	21	38693	68	5	62	1	72
SRP_00355	-	0.29	0.27	0.32	26	41824	56	7	48	1	70
SRP_00358	Bacteria_small_SRP links to Rfam database...	0.68	0.63	0.73	22	6298	8	2	6	0	13
SRP_00383	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	3223	17	1	16	0	24
TMR_00123	tmRNA links to Rfam database...	0.43	0.39	0.47	39	66347	49	5	39	5	62
TMR_00180	tmRNA links to Rfam database...	0.52	0.51	0.54	50	67069	50	9	33	8	49
TMR_00240	tmRNA links to Rfam database...	0.47	0.47	0.48	40	63106	50	7	37	6	45
TMR_00384	tmRNA links to Rfam database...	0.32	0.30	0.34	32	65609	67	2	60	5	76
TMR_00395	tmRNA links to Rfam database...	0.60	0.54	0.67	59	64532	34	4	25	5	50
TMR_00398	tmRNA links to Rfam database...	0.68	0.62	0.73	66	65251	29	2	22	5	40
TMR_00399	tmRNA links to Rfam database...	0.31	0.30	0.32	28	64892	65	13	47	5	66
TMR_00431	tmRNA links to Rfam database...	0.68	0.62	0.76	34	51958	47	5	6	36	21
TMR_00443	tmRNA links to Rfam database...	0.32	0.28	0.36	29	67080	58	5	47	6	75
TMR_00457	tmRNA links to Rfam database...	0.29	0.28	0.30	29	78508	73	14	55	4	73
TMR_00469	tmRNA links to Rfam database...	0.34	0.33	0.35	33	64525	62	10	52	0	67
TMR_00502	tmRNA links to Rfam database...	0.30	0.30	0.31	28	75375	71	12	51	8	65
TMR_00503	tmRNA links to Rfam database...	0.47	0.45	0.50	50	67795	58	0	51	7	61
TMR_00519	tmRNA links to Rfam database...	0.24	0.24	0.24	23	63095	82	13	59	10	72
TMR_00528	tmRNA links to Rfam database...	0.13	0.12	0.14	12	63102	86	8	68	10	85
TMR_00541	tmRNA links to Rfam database...	0.49	0.47	0.51	49	61680	49	3	44	2	56
TMR_00547	tmRNA links to Rfam database...	0.46	0.43	0.49	43	65253	45	1	44	0	57
TMR_00562	tmRNA links to Rfam database...	0.39	0.36	0.42	37	72683	58	9	42	7	65
TMR_00566	tmRNA links to Rfam database...	0.46	0.46	0.46	46	60626	54	7	47	0	54
TMR_00571	tmRNA links to Rfam database...	0.35	0.33	0.38	33	60639	62	8	46	8	66
TMR_00584	tmRNA links to Rfam database...	0.46	0.43	0.48	42	60988	52	5	40	7	55
TMR_00594	tmRNA links to Rfam database...	0.48	0.48	0.49	50	79299	57	10	42	5	54
TMR_00605	tmRNA links to Rfam database...	0.50	0.48	0.52	52	74205	51	12	36	3	56
TMR_00609	tmRNA links to Rfam database...	0.71	0.68	0.75	77	63443	26	6	20	0	36
TMR_00624	tmRNA links to Rfam database...	0.69	0.67	0.71	72	62379	32	10	20	2	36
TMR_00698	tmRNA links to Rfam database...	0.49	0.49	0.50	51	63088	51	16	35	0	53
TMR_00703	tmRNA links to Rfam database...	0.26	0.24	0.29	24	67444	64	5	55	4	75
TMR_00706	tmRNA links to Rfam database...	0.37	0.34	0.40	35	66342	54	11	42	1	68
TMR_00711	tmRNA links to Rfam database...	0.47	0.45	0.49	44	67807	52	15	30	7	54

^top

Performance of NanoFolder - scored lower in this pairwise comparison

1. Total counts & total scores for NanoFolder

Total Base Pair Counts
Total TP	3369
Total TN	6767045
Total FP	16042
Total FP CONTRA	2726
Total FP INCONS	12804
Total FP COMP	512
Total FN	10711

Total Scores
MCC	0.205
Average MCC ± 95% Confidence Intervals	0.280 ± 0.032
Sensitivity	0.239
Positive Predictive Value	0.178
Nr of predictions	233

^top

2. Individual counts for NanoFolder [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00017	RNaseP_nuc links to Rfam database...	0.02	0.03	0.02	2	50914	131	38	86	7	62
ASE_00083	RNaseP_bact_a links to Rfam database...	0.22	0.25	0.20	27	62347	108	12	95	1	83
ASE_00122	RNaseP_bact_a links to Rfam database...	0.27	0.30	0.24	26	43258	84	13	68	3	62
ASE_00185	RNaseP_bact_a links to Rfam database...	0.17	0.19	0.16	24	73382	134	14	116	4	104
ASE_00190	RNaseP_bact_b links to Rfam database...	0.24	0.28	0.21	25	45334	93	14	78	1	65
ASE_00191	RNaseP_arch links to Rfam database...	0.36	0.43	0.30	26	29559	67	15	46	6	35
ASE_00196	RNaseP_arch links to Rfam database...	0.49	0.57	0.42	43	31524	62	16	43	3	32
ASE_00221	RNaseP_bact_a links to Rfam database...	0.20	0.21	0.18	25	64484	112	10	101	1	92
ASE_00227	RNaseP_bact_a links to Rfam database...	0.28	0.31	0.25	41	78840	122	20	102	0	92
ASE_00228	RNaseP_bact_a links to Rfam database...	0.05	0.06	0.04	5	46858	109	17	91	1	81
ASE_00229	RNaseP_bact_a links to Rfam database...	0.12	0.14	0.11	12	42380	97	12	82	3	75
ASE_00231	RNaseP_bact_a links to Rfam database...	0.37	0.42	0.33	40	47773	84	17	65	2	56
ASE_00234	RNaseP_bact_a links to Rfam database...	0.25	0.27	0.23	35	75315	117	10	106	1	94
ASE_00238	RNaseP_bact_a links to Rfam database...	0.26	0.30	0.23	34	64111	119	18	98	3	80
ASE_00248	RNaseP_bact_a links to Rfam database...	0.13	0.15	0.12	17	62340	124	9	115	0	97
ASE_00250	RNaseP_bact_a links to Rfam database...	0.25	0.29	0.23	38	78835	135	17	113	5	93
ASE_00254	RNaseP_bact_a links to Rfam database...	0.15	0.16	0.14	13	36761	88	3	79	6	69
ASE_00255	RNaseP_bact_a links to Rfam database...	0.11	0.12	0.10	16	74530	146	16	129	1	114
ASE_00257	RNaseP_bact_a links to Rfam database...	0.37	0.42	0.33	41	50917	85	15	67	3	56
ASE_00267	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	45036	115	9	105	1	88
ASE_00270	RNaseP_bact_a links to Rfam database...	0.19	0.21	0.17	27	72232	132	14	117	1	101
ASE_00274	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	55487	126	12	112	2	103
ASE_00277	RNaseP_bact_a links to Rfam database...	0.10	0.12	0.08	11	48071	123	23	100	0	80
ASE_00279	RNaseP_bact_a links to Rfam database...	0.14	0.16	0.13	16	53177	109	16	92	1	85
ASE_00285	RNaseP_bact_a links to Rfam database...	0.34	0.36	0.31	44	68866	98	14	82	2	78
ASE_00287	RNaseP_bact_a links to Rfam database...	0.15	0.17	0.14	17	54824	107	14	91	2	86
ASE_00295	RNaseP_bact_a links to Rfam database...	0.14	0.16	0.13	21	73761	140	19	119	2	110
ASE_00298	RNaseP_bact_a links to Rfam database...	0.09	0.10	0.08	11	67389	129	8	120	1	102
ASE_00321	RNaseP_bact_b links to Rfam database...	0.11	0.14	0.09	12	54484	122	22	97	3	76
ASE_00335	RNaseP_bact_b links to Rfam database...	0.10	0.12	0.09	14	75304	151	22	126	3	102
ASE_00340	RNaseP_bact_a links to Rfam database...	0.06	0.07	0.05	6	45943	110	13	94	3	79
ASE_00344	-	0.30	0.38	0.24	21	27175	84	18	47	19	35
ASE_00350	-	0.00	0.00	0.00	0	29557	101	20	69	12	52
ASE_00367	RNaseP_bact_a links to Rfam database...	0.08	0.09	0.07	8	42960	110	10	93	7	78
ASE_00370	RNaseP_bact_a links to Rfam database...	0.03	0.04	0.03	3	41796	109	18	88	3	81
ASE_00372	RNaseP_bact_a links to Rfam database...	0.17	0.20	0.15	20	51871	113	19	93	1	80
ASE_00375	RNaseP_bact_a links to Rfam database...	0.12	0.14	0.11	15	60246	120	10	107	3	95
ASE_00376	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	56822	136	9	122	5	105
ASE_00377	RNaseP_bact_a links to Rfam database...	0.25	0.27	0.23	29	57505	98	10	86	2	78
ASE_00386	RNaseP_bact_a links to Rfam database...	0.14	0.16	0.13	15	50284	106	9	95	2	81
ASE_00393	RNaseP_bact_a links to Rfam database...	0.31	0.35	0.27	33	47773	90	18	71	1	60
ASE_00412	RNaseP_bact_a links to Rfam database...	0.15	0.17	0.14	18	58183	111	14	96	1	87
ASE_00413	RNaseP_bact_a links to Rfam database...	0.08	0.10	0.07	8	44438	108	19	86	3	73
ASE_00416	RNaseP_bact_a links to Rfam database...	0.39	0.43	0.35	54	77267	103	18	82	3	73
ASE_00417	RNaseP_arch links to Rfam database...	0.32	0.36	0.28	36	54486	98	18	75	5	64
ASE_00422	RNaseP_bact_a links to Rfam database...	0.28	0.31	0.25	29	46856	87	9	77	1	65
ASE_00427	RNaseP_nuc links to Rfam database...	0.06	0.09	0.04	4	40651	105	35	65	5	42
ASE_00428	RNaseP_bact_a links to Rfam database...	0.24	0.26	0.22	33	76483	121	13	107	1	92
ASE_00429	-	0.08	0.09	0.07	6	28114	84	14	69	1	60
ASE_00430	RNaseP_bact_a links to Rfam database...	0.16	0.18	0.14	17	46852	102	10	92	0	80
ASE_00434	RNaseP_bact_b links to Rfam database...	0.29	0.34	0.25	37	68116	122	20	92	10	73
ASE_00437	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	79238	164	12	151	1	135
ASE_00451	RNaseP_bact_a links to Rfam database...	0.20	0.22	0.19	27	70731	118	8	110	0	98
ASE_00454	RNaseP_nuc links to Rfam database...	0.24	0.32	0.19	20	43260	103	28	57	18	43
CRW_00654	-	0.41	0.47	0.36	58	78049	105	18	85	2	66
CRW_00658	-	0.21	0.26	0.16	27	74527	137	28	109	0	75
CRW_00663	-	0.08	0.10	0.07	6	26014	90	17	69	4	55
CRW_00664	-	0.14	0.19	0.11	15	53486	134	42	85	7	63
CRW_00671	Intron_gpI links to Rfam database...	0.18	0.21	0.16	24	62682	130	23	106	1	93
CRW_00672	Intron_gpI links to Rfam database...	0.36	0.43	0.31	48	72233	114	35	74	5	63
CRW_00688	-	0.33	0.40	0.27	23	21859	64	21	42	1	34
CRW_00721	-	0.22	0.31	0.15	21	58515	133	46	71	16	47
CRW_01535	5S_rRNA links to Rfam database...	0.20	0.24	0.17	9	7088	43	7	36	0	28
CRW_01539	5S_rRNA links to Rfam database...	0.10	0.11	0.10	4	7099	40	1	36	3	33
CRW_01563	5S_rRNA links to Rfam database...	0.11	0.14	0.11	5	6856	43	5	37	1	32
CRW_01583	5S_rRNA links to Rfam database...	0.36	0.41	0.33	15	7095	31	8	22	1	22
CRW_01590	5S_rRNA links to Rfam database...	-0.01	0.00	0.00	0	7093	50	7	40	3	37
CRW_01593	5S_rRNA links to Rfam database...	0.32	0.38	0.29	14	7091	36	5	30	1	23
CRW_01595	5S_rRNA links to Rfam database...	-0.01	0.00	0.00	0	8459	57	10	46	1	37
CRW_01603	5S_rRNA links to Rfam database...	0.41	0.46	0.38	17	7095	29	6	22	1	20
CRW_01617	5S_rRNA links to Rfam database...	0.20	0.24	0.17	9	7087	45	7	37	1	28
CRW_01625	5S_rRNA links to Rfam database...	0.43	0.49	0.38	18	7093	31	7	22	2	19
PDB_00011	-	0.96	0.92	1.00	11	265	0	0	0	0	1
PDB_00017	-	0.66	0.67	0.67	10	688	5	1	4	0	5
PDB_00036	-	-0.01	0.00	0.00	0	3457	29	1	28	0	27
PDB_00070	tRNA links to Rfam database...	0.25	0.29	0.23	7	2819	24	4	20	0	17
PDB_00078	-	0.00	0.00	0.00	0	49644	126	10	116	0	115
PDB_00113	-	0.94	0.89	1.00	8	223	0	0	0	0	1
PDB_00119	-	0.95	0.90	1.00	9	244	0	0	0	0	1
PDB_00136	-	0.70	0.73	0.68	19	2387	9	1	8	0	7
PDB_00137	-	0.87	0.77	1.00	10	396	0	0	0	0	3
PDB_00160	-	0.89	0.89	0.89	8	267	2	0	1	1	1
PDB_00178	-	-0.02	0.00	0.00	0	517	11	1	10	0	11
PDB_00221	-	0.94	0.89	1.00	8	245	0	0	0	0	1
PDB_00278	-	0.04	0.06	0.04	4	24875	98	13	84	1	68
PDB_00312	-	1.00	1.00	1.00	9	426	1	0	0	1	0
PDB_00326	-	0.58	0.64	0.53	18	3707	16	4	12	0	10
PDB_00341	-	0.47	0.44	0.54	7	690	6	0	6	0	9
PDB_00349	-	0.10	0.14	0.10	2	926	18	0	18	0	12
PDB_00417	-	0.00	0.00	0.00	0	14138	58	2	56	0	56
PDB_00430	tRNA links to Rfam database...	0.38	0.44	0.34	11	3208	21	6	15	0	14
PDB_00527	-	-0.02	0.00	0.00	0	292	8	2	6	0	5
PDB_00565	-	0.24	0.24	0.24	12	8079	37	1	36	0	38
PDB_00570	-	-0.01	0.00	0.00	0	2257	21	0	21	0	22
PDB_00571	tRNA links to Rfam database...	-0.01	0.00	0.00	0	3286	36	6	29	1	25
PDB_00573	-	-0.01	0.00	0.00	0	6622	48	5	43	0	34
PDB_00584	-	0.47	0.53	0.43	9	1464	12	1	11	0	8
PDB_00698	-	0.97	0.95	1.00	18	843	0	0	0	0	1
PDB_00701	-	0.04	0.05	0.04	5	45319	127	14	113	0	104
PDB_00725	-	0.82	0.80	0.86	12	581	2	0	2	0	3
PDB_00734	-	0.83	0.70	1.00	7	224	0	0	0	0	3
PDB_00823	-	-0.04	0.00	0.00	0	183	7	0	7	0	9
PDB_00828	Purine links to Rfam database...	0.30	0.33	0.28	9	2453	23	0	23	0	18
PDB_00851	-	0.16	0.17	0.17	7	4711	35	3	32	0	34
PDB_00890	-	-0.02	0.00	0.00	0	690	13	2	11	0	14
PDB_00917	-	0.31	0.34	0.29	32	35136	81	10	67	4	63
PDB_00923	-	1.00	1.00	1.00	6	184	2	0	0	2	0
PDB_00994	-	0.40	0.50	0.33	21	10521	44	13	30	1	21
PDB_01009	tRNA links to Rfam database...	0.27	0.33	0.23	7	2455	25	3	20	2	14
PDB_01051	Telomerase-cil links to Rfam database...	-0.02	0.00	0.00	0	885	18	1	17	0	13
PDB_01074	-	-0.01	0.00	0.00	0	2747	28	3	25	0	25
PDB_01076	-	0.00	0.00	0.00	0	23356	80	7	73	0	79
PDB_01130	-	-0.01	0.00	0.00	0	1742	28	5	23	0	20
PDB_01199	-	-0.01	0.00	0.00	0	2116	29	2	27	0	24
PDB_01236	ykoK links to Rfam database...	0.31	0.33	0.30	18	11568	43	3	39	1	36
PDB_01275	-	0.04	0.04	0.04	3	18258	75	6	69	0	68
RFA_00416	Hammerhead_3 links to Rfam database...	0.94	1.00	0.88	15	1468	6	2	0	4	0
RFA_00434	Hammerhead_3 links to Rfam database...	0.84	1.00	0.71	15	1410	8	6	0	2	0
RFA_00436	Hammerhead_3 links to Rfam database...	0.86	1.00	0.75	15	1411	7	5	0	2	0
RFA_00442	Hammerhead_3 links to Rfam database...	0.94	1.00	0.88	15	1414	4	2	0	2	0
RFA_00446	Hammerhead_3 links to Rfam database...	0.85	0.93	0.78	14	1467	7	3	1	3	1
RFA_00604	Telomerase-cil links to Rfam database...	0.42	0.54	0.33	19	13472	53	14	25	14	16
RFA_00620	Telomerase-cil links to Rfam database...	0.16	0.23	0.11	9	21864	80	29	43	8	30
RFA_00664	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	978	13	0	12	1	14
RFA_00674	Hammerhead_1 links to Rfam database...	0.12	0.14	0.13	2	1112	15	0	14	1	12
RFA_00675	Hammerhead_1 links to Rfam database...	0.28	0.29	0.29	4	976	10	1	9	0	10
RFA_00677	Hammerhead_1 links to Rfam database...	0.62	0.64	0.60	9	975	10	0	6	4	5
RFA_00684	Hammerhead_1 links to Rfam database...	0.74	0.71	0.77	10	977	5	2	1	2	4
RFA_00703	Hammerhead_1 links to Rfam database...	0.26	0.36	0.19	5	4252	32	5	16	11	9
RFA_00716	Hammerhead_1 links to Rfam database...	-0.02	0.00	0.00	0	929	17	0	17	0	14
RFA_00717	Hammerhead_1 links to Rfam database...	0.64	0.64	0.64	9	889	5	2	3	0	5
RFA_00730	s2m links to Rfam database...	0.38	0.42	0.36	5	889	10	3	6	1	7
RFA_00763	s2m links to Rfam database...	0.38	0.42	0.36	5	889	10	3	6	1	7
RFA_00765	s2m links to Rfam database...	0.39	0.42	0.38	5	890	9	2	6	1	7
RFA_00770	Corona_pk3 links to Rfam database...	-0.01	0.00	0.00	0	1996	24	0	20	4	18
RFA_00773	Corona_pk3 links to Rfam database...	0.93	1.00	0.86	18	1932	9	3	0	6	0
RFA_00808	RydC links to Rfam database...	0.83	1.00	0.70	16	1993	7	7	0	0	0
RFA_00816	R2_retro_el links to Rfam database...	0.00	0.00	0.00	0	23133	89	30	57	2	41
SPR_00030	-	0.47	0.52	0.42	11	2459	16	2	13	1	10
SPR_00066	tRNA links to Rfam database...	0.47	0.57	0.39	12	2819	20	4	15	1	9
SPR_00228	tRNA links to Rfam database...	0.44	0.60	0.32	12	3791	26	15	10	1	8
SPR_00314	tRNA links to Rfam database...	0.47	0.57	0.39	12	2895	21	9	10	2	9
SPR_00331	tRNA links to Rfam database...	0.48	0.60	0.39	12	2744	19	6	13	0	8
SPR_00333	tRNA links to Rfam database...	0.25	0.33	0.21	7	2741	27	10	17	0	14
SPR_00353	tRNA links to Rfam database...	0.64	0.81	0.52	17	2817	16	8	8	0	4
SPR_00398	-	-0.01	0.00	0.00	0	2185	28	10	16	2	13
SPR_00452	tRNA links to Rfam database...	0.27	0.33	0.23	7	2820	24	7	16	1	14
SPR_00456	tRNA links to Rfam database...	0.49	0.57	0.43	12	2822	19	5	11	3	9
SPR_00462	tRNA links to Rfam database...	0.65	0.74	0.58	14	2391	11	4	6	1	5
SPR_00476	tRNA links to Rfam database...	0.47	0.52	0.42	11	2749	17	4	11	2	10
SPR_00496	tRNA links to Rfam database...	0.47	0.57	0.40	12	2745	22	7	11	4	9
SPR_00497	tRNA links to Rfam database...	0.27	0.33	0.23	7	2745	23	5	18	0	14
SPR_00502	tRNA links to Rfam database...	0.27	0.33	0.23	7	2896	26	2	21	3	14
SPR_00509	tRNA links to Rfam database...	0.23	0.30	0.19	6	2895	25	8	17	0	14
SPR_00512	tRNA links to Rfam database...	0.61	0.75	0.50	15	2896	15	6	9	0	5
SPR_00542	tRNA links to Rfam database...	0.26	0.33	0.22	7	3538	28	4	21	3	14
SPR_00557	tRNA links to Rfam database...	0.42	0.52	0.34	11	2818	22	8	13	1	10
SPR_00832	-	0.53	0.67	0.43	10	1630	13	5	8	0	5
SPR_00868	tRNA links to Rfam database...	0.49	0.57	0.43	12	2898	19	5	11	3	9
SPR_00932	tRNA links to Rfam database...	0.43	0.52	0.35	11	2819	21	7	13	1	10
SPR_00957	tRNA links to Rfam database...	0.63	0.76	0.53	16	2973	15	7	7	1	5
SPR_01040	tRNA links to Rfam database...	0.15	0.19	0.13	4	2744	27	4	23	0	17
SPR_01143	tRNA links to Rfam database...	0.41	0.48	0.36	10	2528	18	8	10	0	11
SRP_00005	-	-0.01	0.00	0.00	0	3966	39	6	33	0	24
SRP_00038	Bacteria_small_SRP links to Rfam database...	0.23	0.27	0.20	9	5005	36	1	35	0	24
SRP_00046	Bacteria_small_SRP links to Rfam database...	0.33	0.38	0.29	12	4712	30	3	26	1	20
SRP_00103	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	45319	132	14	118	0	102
SRP_00117	Metazoa_SRP links to Rfam database...	0.20	0.23	0.18	23	45322	106	9	97	0	79
SRP_00138	-	0.44	0.52	0.39	14	3969	24	8	14	2	13
SRP_00144	Archaea_SRP links to Rfam database...	0.05	0.06	0.05	6	46538	122	17	104	1	88
SRP_00170	Bacteria_small_SRP links to Rfam database...	0.29	0.36	0.25	9	4059	28	4	23	1	16
SRP_00173	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	38104	124	13	109	2	90
SRP_00193	-	0.16	0.19	0.15	7	6855	43	4	37	2	29
SRP_00194	Bacteria_small_SRP links to Rfam database...	0.27	0.33	0.23	7	3209	27	5	19	3	14
SRP_00197	Archaea_SRP links to Rfam database...	0.12	0.14	0.11	14	49324	117	16	101	0	87
SRP_00198	Archaea_SRP links to Rfam database...	0.07	0.08	0.06	8	50903	129	15	114	0	95
SRP_00200	Bacteria_small_SRP links to Rfam database...	0.41	0.47	0.35	17	6855	31	4	27	0	19
SRP_00216	Bacteria_small_SRP links to Rfam database...	0.44	0.48	0.41	13	3371	19	4	15	0	14
SRP_00229	Bacteria_small_SRP links to Rfam database...	0.42	0.52	0.35	14	5213	26	8	18	0	13
SRP_00233	Bacteria_small_SRP links to Rfam database...	0.25	0.30	0.22	10	5106	35	4	31	0	23
SRP_00234	Bacteria_large_SRP links to Rfam database...	0.21	0.24	0.18	21	36200	97	19	75	3	65
SRP_00243	Bacteria_small_SRP links to Rfam database...	0.47	0.55	0.40	17	5109	25	7	18	0	14
SRP_00244	Bacteria_small_SRP links to Rfam database...	0.38	0.44	0.34	17	6853	33	2	31	0	22
SRP_00266	Bacteria_small_SRP links to Rfam database...	0.55	0.66	0.46	19	4615	22	8	14	0	10
SRP_00267	Metazoa_SRP links to Rfam database...	0.04	0.05	0.04	5	44424	122	15	107	0	91
SRP_00269	Bacteria_small_SRP links to Rfam database...	0.46	0.52	0.43	17	5010	24	6	17	1	16
SRP_00273	Bacteria_small_SRP links to Rfam database...	0.36	0.40	0.33	16	6737	34	6	27	1	24
SRP_00276	Archaea_SRP links to Rfam database...	0.19	0.22	0.18	24	50585	112	10	102	0	86
SRP_00278	Archaea_SRP links to Rfam database...	0.33	0.36	0.30	38	45928	90	14	76	0	67
SRP_00285	Bacteria_small_SRP links to Rfam database...	0.38	0.43	0.35	13	3704	24	6	18	0	17
SRP_00303	Bacteria_small_SRP links to Rfam database...	0.36	0.41	0.33	13	6630	27	3	24	0	19
SRP_00308	Bacteria_large_SRP links to Rfam database...	0.14	0.17	0.12	15	36189	112	18	93	1	73
SRP_00317	Metazoa_SRP links to Rfam database...	0.14	0.16	0.12	16	45018	116	16	100	0	82
SRP_00321	Archaea_SRP links to Rfam database...	0.44	0.49	0.40	53	47453	81	16	64	1	55
SRP_00322	Archaea_SRP links to Rfam database...	0.22	0.25	0.21	27	48385	105	8	96	1	82
SRP_00332	Archaea_SRP links to Rfam database...	0.12	0.14	0.11	15	50269	120	8	111	1	91
SRP_00333	Bacteria_small_SRP links to Rfam database...	0.20	0.24	0.19	8	5108	35	3	32	0	26
SRP_00337	Bacteria_large_SRP links to Rfam database...	0.42	0.46	0.38	42	35400	70	15	54	1	49
SRP_00338	Bacteria_small_SRP links to Rfam database...	0.52	0.56	0.49	20	5419	22	4	17	1	16
SRP_00342	Bacteria_small_SRP links to Rfam database...	0.20	0.24	0.17	6	3970	29	7	22	0	19
SRP_00354	-	0.06	0.08	0.06	7	38654	120	15	105	0	86
SRP_00355	-	0.09	0.10	0.08	10	41778	119	9	108	2	86
SRP_00358	Bacteria_small_SRP links to Rfam database...	0.32	0.37	0.28	13	6282	33	4	29	0	22
SRP_00383	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	3205	35	9	26	0	24
TMR_00123	tmRNA links to Rfam database...	0.19	0.23	0.16	23	66283	126	20	104	2	78
TMR_00180	tmRNA links to Rfam database...	0.12	0.16	0.10	16	66999	149	35	111	3	83
TMR_00240	tmRNA links to Rfam database...	0.23	0.31	0.17	26	63041	128	39	84	5	59
TMR_00384	tmRNA links to Rfam database...	0.17	0.20	0.14	22	65550	133	26	105	2	86
TMR_00395	tmRNA links to Rfam database...	0.27	0.31	0.24	34	64478	115	10	98	7	75
TMR_00398	tmRNA links to Rfam database...	0.05	0.07	0.05	7	65197	139	24	113	2	99
TMR_00399	tmRNA links to Rfam database...	0.20	0.26	0.16	24	64833	130	38	85	7	70
TMR_00431	tmRNA links to Rfam database...	0.24	0.33	0.17	18	51899	127	26	60	41	37
TMR_00443	tmRNA links to Rfam database...	0.17	0.20	0.15	21	67018	126	24	98	4	83
TMR_00457	tmRNA links to Rfam database...	0.19	0.25	0.15	25	78443	141	39	99	3	77
TMR_00469	tmRNA links to Rfam database...	0.10	0.12	0.08	12	64469	145	27	112	6	88
TMR_00502	tmRNA links to Rfam database...	0.14	0.19	0.11	18	75303	150	45	100	5	75
TMR_00503	tmRNA links to Rfam database...	0.11	0.14	0.10	15	67741	141	20	120	1	96
TMR_00519	tmRNA links to Rfam database...	0.04	0.05	0.03	5	63046	141	33	106	2	90
TMR_00528	tmRNA links to Rfam database...	0.13	0.15	0.11	15	63051	131	20	104	7	82
TMR_00541	tmRNA links to Rfam database...	0.12	0.14	0.10	15	61630	139	22	109	8	90
TMR_00547	tmRNA links to Rfam database...	0.28	0.35	0.23	35	65188	122	37	81	4	65
TMR_00562	tmRNA links to Rfam database...	0.09	0.12	0.08	12	72617	147	27	115	5	90
TMR_00566	tmRNA links to Rfam database...	0.13	0.16	0.11	16	60582	132	22	106	4	84
TMR_00571	tmRNA links to Rfam database...	0.05	0.06	0.04	6	60577	149	19	124	6	93
TMR_00584	tmRNA links to Rfam database...	0.01	0.01	0.01	1	60922	159	33	119	7	96
TMR_00594	tmRNA links to Rfam database...	0.08	0.10	0.06	10	79238	156	30	123	3	94
TMR_00605	tmRNA links to Rfam database...	0.28	0.35	0.23	38	74141	129	36	90	3	70
TMR_00609	tmRNA links to Rfam database...	0.53	0.62	0.45	70	63391	89	28	57	4	43
TMR_00624	tmRNA links to Rfam database...	0.36	0.44	0.30	47	62325	111	27	82	2	61
TMR_00698	tmRNA links to Rfam database...	0.20	0.24	0.17	25	63042	124	27	96	1	79
TMR_00703	tmRNA links to Rfam database...	0.10	0.12	0.08	12	67376	140	26	114	0	87
TMR_00706	tmRNA links to Rfam database...	0.14	0.17	0.11	17	66281	133	29	103	1	86
TMR_00711	tmRNA links to Rfam database...	0.18	0.22	0.14	22	67740	137	41	93	3	76

^top

Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.

Table of contents:

Overview

Performance plots

Performance of RNASLOpt - scored higher in this pairwise comparison

1. Total counts & total scores for RNASLOpt

2. Individual counts for RNASLOpt [ download as .csv ]

Performance of NanoFolder - scored lower in this pairwise comparison

1. Total counts & total scores for NanoFolder

2. Individual counts for NanoFolder [ download as .csv ]