CompaRNA - on-line benchmarks of RNA structure prediction methods

Laboratory of Structural Bioinformatics @ Adam Mickiewicz University in Poznan

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Overview

Metric	RNASampler(20)		Afold
MCC	0.620	>	0.613
Average MCC ± 95% Confidence Intervals	0.627 ± 0.039	<	0.646 ± 0.040
Sensitivity	0.433	<	0.606
Positive Predictive Value	0.889	>	0.622
Total TP	3258	<	4556
Total TN	2420671	>	2417011
Total FP	619	<	3293
Total FP CONTRA	57	<	341
Total FP INCONS	351	<	2429
Total FP COMP	211	<	523
Total FN	4265	>	2967
P-value	3.09925167801e-06

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Performance plots

Comparison of performance of RNASampler(20) and Afold. Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data (individual counts for RNASampler(20) and Afold).
Average Matthews Correlation Coefficients (MCC) with 95% confidence intervals (CIs) were plotted for different RNA families, for which at least 3 members were present in the benchmarking dataset. 'n' denotes the number of MCCs used to calculate the average and CI. See tables below for raw data (individual counts for RNASampler(20) and Afold).
Comparison of average Matthews Correlation Coefficients (MCCs) for RNASampler(20) and Afold. The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data (individual counts for RNASampler(20) and Afold).

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Performance of RNASampler(20) - scored higher in this pairwise comparison

1. Total counts & total scores for RNASampler(20)

Total Base Pair Counts
Total TP	3258
Total TN	2420671
Total FP	619
Total FP CONTRA	57
Total FP INCONS	351
Total FP COMP	211
Total FN	4265

Total Scores
MCC	0.620
Average MCC ± 95% Confidence Intervals	0.627 ± 0.039
Sensitivity	0.433
Positive Predictive Value	0.889
Nr of predictions	195

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2. Individual counts for RNASampler(20) [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00064	RNaseP_bact_a links to Rfam database...	0.44	0.34	0.58	30	45399	23	1	21	1	59
ASE_00090	RNaseP_bact_a links to Rfam database...	0.54	0.40	0.74	40	55557	14	0	14	0	61
ASE_00135	RNaseP_bact_a links to Rfam database...	0.54	0.36	0.83	39	63143	16	0	8	8	70
ASE_00153	RNaseP_nuc links to Rfam database...	0.38	0.33	0.44	24	57576	38	7	23	8	49
ASE_00215	RNaseP_bact_a links to Rfam database...	0.38	0.23	0.62	23	48479	16	0	14	2	76
ASE_00305	RNaseP_bact_b links to Rfam database...	0.78	0.71	0.86	60	54545	14	1	9	4	25
ASE_00328	RNaseP_bact_b links to Rfam database...	0.70	0.57	0.85	64	72696	14	5	6	3	48
ASE_00361	RNaseP_bact_a links to Rfam database...	0.34	0.21	0.55	27	75417	26	3	19	4	100
ASE_00427	RNaseP_nuc links to Rfam database...	0.57	0.46	0.72	21	40726	18	1	7	10	25
ASE_00441	RNaseP_bact_a links to Rfam database...	0.46	0.31	0.69	35	64210	16	0	16	0	77
CRW_00548	5S_rRNA links to Rfam database...	0.64	0.47	0.86	18	7360	3	0	3	0	20
CRW_00552	5S_rRNA links to Rfam database...	0.75	0.56	1.00	22	7118	1	0	0	1	17
CRW_00555	5S_rRNA links to Rfam database...	0.69	0.55	0.88	22	7601	3	0	3	0	18
CRW_00567	5S_rRNA links to Rfam database...	0.81	0.65	1.00	26	7477	1	0	0	1	14
CRW_00570	5S_rRNA links to Rfam database...	0.91	0.84	1.00	31	6872	1	0	0	1	6
CRW_01484	5S_rRNA links to Rfam database...	0.77	0.59	1.00	23	7480	0	0	0	0	16
CRW_01485	5S_rRNA links to Rfam database...	0.65	0.49	0.86	19	7481	3	0	3	0	20
CRW_01487	5S_rRNA links to Rfam database...	0.53	0.41	0.68	17	7478	8	2	6	0	24
CRW_01489	5S_rRNA links to Rfam database...	0.65	0.49	0.86	19	7481	3	0	3	0	20
CRW_01491	5S_rRNA links to Rfam database...	0.65	0.44	0.95	19	8365	1	0	1	0	24
CRW_01497	5S_rRNA links to Rfam database...	0.53	0.43	0.65	17	7114	9	0	9	0	23
CRW_01498	5S_rRNA links to Rfam database...	0.73	0.53	1.00	23	8105	0	0	0	0	20
CRW_01499	5S_rRNA links to Rfam database...	0.76	0.59	1.00	24	7977	1	0	0	1	17
CRW_01500	5S_rRNA links to Rfam database...	0.64	0.47	0.86	18	7729	3	0	3	0	20
CRW_01508	5S_rRNA links to Rfam database...	0.71	0.55	0.92	23	7976	2	0	2	0	19
CRW_01536	5S_rRNA links to Rfam database...	0.82	0.68	1.00	25	6996	1	0	0	1	12
CRW_01537	5S_rRNA links to Rfam database...	0.66	0.54	0.80	20	7115	7	0	5	2	17
CRW_01539	5S_rRNA links to Rfam database...	0.84	0.70	1.00	26	7114	2	0	0	2	11
CRW_01541	5S_rRNA links to Rfam database...	0.87	0.76	1.00	28	7112	1	0	0	1	9
CRW_01548	5S_rRNA links to Rfam database...	0.73	0.65	0.83	24	6992	6	0	5	1	13
CRW_01559	5S_rRNA links to Rfam database...	0.93	0.86	1.00	32	7228	2	0	0	2	5
CRW_01562	5S_rRNA links to Rfam database...	0.75	0.57	1.00	21	7119	1	0	0	1	16
CRW_01563	5S_rRNA links to Rfam database...	0.77	0.62	0.96	23	6879	2	0	1	1	14
CRW_01566	5S_rRNA links to Rfam database...	0.66	0.49	0.90	18	7120	3	0	2	1	19
CRW_01570	5S_rRNA links to Rfam database...	0.85	0.73	1.00	27	7113	2	0	0	2	10
CRW_01572	5S_rRNA links to Rfam database...	0.75	0.59	0.96	22	6998	5	0	1	4	15
CRW_01578	5S_rRNA links to Rfam database...	0.85	0.73	1.00	27	7113	2	0	0	2	10
CRW_01580	5S_rRNA links to Rfam database...	0.80	0.65	1.00	24	7116	2	0	0	2	13
CRW_01581	5S_rRNA links to Rfam database...	0.53	0.38	0.74	14	7121	6	0	5	1	23
CRW_01583	5S_rRNA links to Rfam database...	0.77	0.62	0.96	23	7116	2	0	1	1	14
CRW_01590	5S_rRNA links to Rfam database...	0.59	0.35	1.00	13	7127	1	0	0	1	24
CRW_01603	5S_rRNA links to Rfam database...	0.75	0.57	1.00	21	7119	1	0	0	1	16
CRW_01605	5S_rRNA links to Rfam database...	0.73	0.54	1.00	20	7120	2	0	0	2	17
CRW_01608	5S_rRNA links to Rfam database...	0.82	0.68	1.00	25	8360	1	0	0	1	12
CRW_01620	5S_rRNA links to Rfam database...	0.85	0.73	1.00	27	6994	1	0	0	1	10
CRW_01621	5S_rRNA links to Rfam database...	0.82	0.68	1.00	25	7115	1	0	0	1	12
CRW_01623	5S_rRNA links to Rfam database...	0.77	0.59	1.00	22	7118	1	0	0	1	15
PDB_00012	mir-TAR links to Rfam database...	1.00	1.00	1.00	7	399	2	0	0	2	0
PDB_00213	Gammaretro_CES links to Rfam database...	0.75	0.56	1.00	23	5027	0	0	0	0	18
PDB_00402	tRNA links to Rfam database...	0.96	0.91	1.00	21	2754	0	0	0	0	2
PDB_00431	tRNA links to Rfam database...	0.97	0.95	1.00	19	2192	1	0	0	1	1
PDB_00553	mir-TAR links to Rfam database...	1.00	1.00	1.00	11	454	0	0	0	0	0
PDB_00571	tRNA links to Rfam database...	0.87	0.80	0.95	20	3300	1	1	0	0	5
PDB_00741	Entero_5_CRE links to Rfam database...	0.72	0.53	1.00	9	694	0	0	0	0	8
PDB_00810	s2m links to Rfam database...	0.59	0.35	1.00	6	1075	0	0	0	0	11
PDB_00828	Purine links to Rfam database...	0.86	0.74	1.00	20	2465	0	0	0	0	7
PDB_00829	Purine links to Rfam database...	0.86	0.75	1.00	18	2260	0	0	0	0	6
PDB_00876	HIV_FE links to Rfam database...	0.92	0.90	0.95	18	971	1	0	1	0	2
PDB_01050	UnaL2 links to Rfam database...	0.92	0.85	1.00	11	619	2	0	0	2	2
PDB_01053	tRNA links to Rfam database...	0.77	0.75	0.80	12	1363	3	3	0	0	4
PDB_01152	HIV_FS2 links to Rfam database...	0.84	0.71	1.00	10	551	0	0	0	0	4
RFA_00389	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00390	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00391	Hammerhead_3 links to Rfam database...	0.93	0.87	1.00	13	1418	2	0	0	2	2
RFA_00396	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	2	0	0	2	1
RFA_00402	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	0	0	0	0	0
RFA_00409	Hammerhead_3 links to Rfam database...	0.93	0.87	1.00	13	1418	1	0	0	1	2
RFA_00416	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1470	2	0	0	2	0
RFA_00433	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00434	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00436	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00440	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1470	2	0	0	2	0
RFA_00442	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00444	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1525	0	0	0	0	0
RFA_00583	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4935	10	0	0	10	0
RFA_00585	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4836	8	0	0	8	0
RFA_00587	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4836	8	0	0	8	0
RFA_00588	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4545	8	0	0	8	0
RFA_00589	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4356	7	0	0	7	0
RFA_00594	Y_RNA links to Rfam database...	0.93	0.87	1.00	13	2762	5	0	0	5	2
RFA_00596	Y_RNA links to Rfam database...	0.82	0.67	1.00	10	5985	13	0	0	13	5
RFA_00658	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	1125	5	0	3	2	14
RFA_00664	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	990	0	0	0	0	14
RFA_00667	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	986	5	0	4	1	14
RFA_00668	Hammerhead_1 links to Rfam database...	0.53	0.29	1.00	4	986	0	0	0	0	10
RFA_00672	Hammerhead_1 links to Rfam database...	0.41	0.31	0.57	4	896	3	0	3	0	9
RFA_00673	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	1125	4	0	3	1	14
RFA_00674	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	1128	0	0	0	0	14
RFA_00675	Hammerhead_1 links to Rfam database...	0.53	0.29	1.00	4	986	0	0	0	0	10
RFA_00677	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	990	0	0	0	0	14
RFA_00678	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	943	3	0	3	0	14
RFA_00680	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	1128	0	0	0	0	14
RFA_00704	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	987	4	0	3	1	14
RFA_00707	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	1035	0	0	0	0	14
RFA_00717	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	903	0	0	0	0	14
RFA_00730	s2m links to Rfam database...	0.81	0.67	1.00	8	895	1	0	0	1	4
RFA_00731	s2m links to Rfam database...	0.81	0.67	1.00	8	895	1	0	0	1	4
RFA_00733	s2m links to Rfam database...	0.64	0.42	1.00	5	898	1	0	0	1	7
RFA_00734	s2m links to Rfam database...	0.64	0.42	1.00	5	898	0	0	0	0	7
RFA_00736	s2m links to Rfam database...	0.50	0.25	1.00	3	900	0	0	0	0	9
RFA_00737	s2m links to Rfam database...	0.81	0.67	1.00	8	895	1	0	0	1	4
RFA_00745	s2m links to Rfam database...	0.50	0.25	1.00	3	943	0	0	0	0	9
RFA_00749	s2m links to Rfam database...	0.50	0.25	1.00	3	900	0	0	0	0	9
RFA_00758	s2m links to Rfam database...	0.76	0.58	1.00	7	896	0	0	0	0	5
RFA_00762	s2m links to Rfam database...	0.50	0.25	1.00	3	900	0	0	0	0	9
RFA_00763	s2m links to Rfam database...	0.81	0.67	1.00	8	895	1	0	0	1	4
RFA_00764	s2m links to Rfam database...	0.81	0.67	1.00	8	895	1	0	0	1	4
RFA_00765	s2m links to Rfam database...	0.81	0.67	1.00	8	895	1	0	0	1	4
RFA_00786	Gammaretro_CES links to Rfam database...	0.72	0.63	0.83	20	5026	4	2	2	0	12
RFA_00791	Gammaretro_CES links to Rfam database...	0.71	0.56	0.90	18	5131	2	0	2	0	14
RFA_00792	Gammaretro_CES links to Rfam database...	0.81	0.72	0.92	23	5025	2	0	2	0	9
RFA_00801	Gammaretro_CES links to Rfam database...	0.74	0.63	0.87	20	5027	3	0	3	0	12
SPR_00074	tRNA links to Rfam database...	0.97	0.95	1.00	19	2831	0	0	0	0	1
SPR_00079	tRNA links to Rfam database...	0.92	0.84	1.00	16	2469	1	0	0	1	3
SPR_00191	tRNA links to Rfam database...	0.90	0.81	1.00	17	2833	0	0	0	0	4
SPR_00333	tRNA links to Rfam database...	0.86	0.86	0.86	18	2754	3	0	3	0	3
SPR_00504	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	0	0	0	0	0
SPR_00505	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00506	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00509	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00512	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00513	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00518	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00610	tRNA links to Rfam database...	0.82	0.76	0.89	16	2538	3	0	2	1	5
SRP_00006	Metazoa_SRP links to Rfam database...	0.87	0.76	0.99	77	45675	4	0	1	3	24
SRP_00008	Bacteria_small_SRP links to Rfam database...	0.66	0.44	1.00	11	2915	0	0	0	0	14
SRP_00011	Plant_SRP links to Rfam database...	0.55	0.42	0.71	44	46298	18	4	14	0	60
SRP_00015	Plant_SRP links to Rfam database...	0.74	0.59	0.94	58	46298	5	3	1	1	41
SRP_00024	Bacteria_large_SRP links to Rfam database...	0.28	0.08	1.00	7	37668	0	0	0	0	80
SRP_00026	Bacteria_large_SRP links to Rfam database...	0.51	0.27	0.96	24	36831	1	0	1	0	64
SRP_00030	Bacteria_large_SRP links to Rfam database...	0.28	0.08	1.00	7	36849	0	0	0	0	81
SRP_00031	Bacteria_large_SRP links to Rfam database...	0.35	0.12	1.00	11	36304	0	0	0	0	78
SRP_00037	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	36585	0	0	0	0	87
SRP_00038	Bacteria_small_SRP links to Rfam database...	0.46	0.21	1.00	7	5043	0	0	0	0	26
SRP_00042	Bacteria_small_SRP links to Rfam database...	0.64	0.48	0.86	12	3991	3	1	1	1	13
SRP_00044	Bacteria_small_SRP links to Rfam database...	0.47	0.22	1.00	7	6098	0	0	0	0	25
SRP_00051	Bacteria_small_SRP links to Rfam database...	0.48	0.23	1.00	7	5453	0	0	0	0	23
SRP_00054	Bacteria_small_SRP links to Rfam database...	0.47	0.22	1.00	7	5558	0	0	0	0	25
SRP_00074	Bacteria_small_SRP links to Rfam database...	0.49	0.24	1.00	7	6548	0	0	0	0	22
SRP_00075	Bacteria_small_SRP links to Rfam database...	0.45	0.21	1.00	7	5558	0	0	0	0	27
SRP_00077	Bacteria_small_SRP links to Rfam database...	0.43	0.19	1.00	7	6663	0	0	0	0	30
SRP_00084	Bacteria_small_SRP links to Rfam database...	0.45	0.21	1.00	7	5453	0	0	0	0	27
SRP_00086	Metazoa_SRP links to Rfam database...	0.87	0.77	0.99	77	44175	3	0	1	2	23
SRP_00088	Bacteria_large_SRP links to Rfam database...	0.40	0.16	1.00	14	34177	0	0	0	0	75
SRP_00089	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	35778	0	0	0	0	90
SRP_00090	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	35511	0	0	0	0	90
SRP_00094	Bacteria_small_SRP links to Rfam database...	0.52	0.42	0.67	10	4080	5	1	4	0	14
SRP_00095	Bacteria_small_SRP links to Rfam database...	0.51	0.40	0.67	10	3990	5	1	4	0	15
SRP_00098	Bacteria_small_SRP links to Rfam database...	0.30	0.16	0.55	6	6430	6	0	5	1	31
SRP_00105	Bacteria_small_SRP links to Rfam database...	0.19	0.09	0.43	3	5558	4	0	4	0	31
SRP_00107	Bacteria_small_SRP links to Rfam database...	0.24	0.16	0.38	3	3647	5	0	5	0	16
SRP_00128	Bacteria_small_SRP links to Rfam database...	0.44	0.19	1.00	7	6779	0	0	0	0	29
SRP_00141	Bacteria_small_SRP links to Rfam database...	0.41	0.17	1.00	7	6321	0	0	0	0	34
SRP_00152	Plant_SRP links to Rfam database...	0.52	0.27	1.00	28	45725	0	0	0	0	75
SRP_00161	Bacteria_small_SRP links to Rfam database...	0.56	0.32	1.00	7	2843	0	0	0	0	15
SRP_00162	Bacteria_small_SRP links to Rfam database...	0.55	0.30	1.00	7	2919	0	0	0	0	16
SRP_00164	Bacteria_small_SRP links to Rfam database...	0.45	0.20	1.00	7	6896	0	0	0	0	28
SRP_00171	Metazoa_SRP links to Rfam database...	0.74	0.61	0.89	54	45390	7	2	5	0	34
SRP_00178	Plant_SRP links to Rfam database...	0.36	0.13	1.00	13	45740	0	0	0	0	89
SRP_00181	Plant_SRP links to Rfam database...	0.41	0.17	1.00	17	46039	0	0	0	0	85
SRP_00182	Plant_SRP links to Rfam database...	0.78	0.66	0.92	67	45983	6	0	6	0	34
SRP_00200	Bacteria_small_SRP links to Rfam database...	0.44	0.19	1.00	7	6896	0	0	0	0	29
SRP_00209	Bacteria_small_SRP links to Rfam database...	0.30	0.19	0.50	5	4646	5	0	5	0	22
SRP_00227	Bacteria_small_SRP links to Rfam database...	0.59	0.35	1.00	11	5140	0	0	0	0	20
SRP_00231	Bacteria_small_SRP links to Rfam database...	0.45	0.21	1.00	7	5453	0	0	0	0	27
SRP_00233	Bacteria_small_SRP links to Rfam database...	0.35	0.12	1.00	4	5147	0	0	0	0	29
SRP_00234	Bacteria_large_SRP links to Rfam database...	0.47	0.23	0.95	20	36294	1	0	1	0	66
SRP_00243	Bacteria_small_SRP links to Rfam database...	0.47	0.23	1.00	7	5144	0	0	0	0	24
SRP_00250	Bacteria_small_SRP links to Rfam database...	0.44	0.19	1.00	7	6779	0	0	0	0	29
SRP_00251	Bacteria_small_SRP links to Rfam database...	0.44	0.19	1.00	7	7014	0	0	0	0	29
SRP_00271	Bacteria_small_SRP links to Rfam database...	0.54	0.29	1.00	7	3233	0	0	0	0	17
SRP_00273	Bacteria_small_SRP links to Rfam database...	0.52	0.28	1.00	11	6775	0	0	0	0	29
SRP_00274	Bacteria_small_SRP links to Rfam database...	0.43	0.18	1.00	7	6896	0	0	0	0	31
SRP_00295	Bacteria_small_SRP links to Rfam database...	0.40	0.16	1.00	6	6897	0	0	0	0	32
SRP_00303	Bacteria_small_SRP links to Rfam database...	0.19	0.09	0.38	3	6662	5	0	5	0	29
SRP_00308	Bacteria_large_SRP links to Rfam database...	0.28	0.08	1.00	7	36308	0	0	0	0	81
SRP_00312	Bacteria_small_SRP links to Rfam database...	0.49	0.37	0.67	10	4171	5	1	4	0	17
SRP_00315	Bacteria_small_SRP links to Rfam database...	0.55	0.30	1.00	7	2919	0	0	0	0	16
SRP_00317	Metazoa_SRP links to Rfam database...	0.76	0.61	0.95	60	45087	8	0	3	5	38
SRP_00318	Bacteria_small_SRP links to Rfam database...	0.55	0.30	1.00	7	2996	0	0	0	0	16
SRP_00325	Bacteria_small_SRP links to Rfam database...	0.46	0.21	1.00	7	4364	0	0	0	0	26
SRP_00335	Bacteria_large_SRP links to Rfam database...	0.42	0.18	1.00	7	35238	0	0	0	0	32
SRP_00337	Bacteria_large_SRP links to Rfam database...	0.38	0.14	1.00	13	35498	0	0	0	0	78
SRP_00338	Bacteria_small_SRP links to Rfam database...	0.44	0.19	1.00	7	5453	0	0	0	0	29
SRP_00347	Metazoa_SRP links to Rfam database...	0.80	0.66	0.98	63	46601	5	0	1	4	33
SRP_00350	Bacteria_small_SRP links to Rfam database...	0.62	0.44	0.86	12	3902	2	1	1	0	15
SRP_00356	Bacteria_small_SRP links to Rfam database...	0.48	0.23	1.00	7	5043	0	0	0	0	23
SRP_00357	Bacteria_small_SRP links to Rfam database...	0.55	0.31	1.00	11	5345	0	0	0	0	25
SRP_00367	Bacteria_small_SRP links to Rfam database...	0.45	0.20	1.00	7	6779	0	0	0	0	28
SRP_00369	Bacteria_small_SRP links to Rfam database...	0.45	0.20	1.00	7	5771	0	0	0	0	28
SRP_00383	Bacteria_small_SRP links to Rfam database...	0.54	0.29	1.00	7	3233	0	0	0	0	17
TMR_00046	tmRNA links to Rfam database...	0.48	0.40	0.58	38	62769	34	5	23	6	58
TMR_00048	tmRNA links to Rfam database...	0.61	0.46	0.80	44	64925	16	3	8	5	51
TMR_00458	tmRNA links to Rfam database...	0.55	0.42	0.72	39	63492	15	7	8	0	54
TMR_00568	tmRNA links to Rfam database...	0.72	0.66	0.78	65	60643	26	2	16	8	34

^top

Performance of Afold - scored lower in this pairwise comparison

1. Total counts & total scores for Afold

Total Base Pair Counts
Total TP	4556
Total TN	2417011
Total FP	3293
Total FP CONTRA	341
Total FP INCONS	2429
Total FP COMP	523
Total FN	2967

Total Scores
MCC	0.613
Average MCC ± 95% Confidence Intervals	0.646 ± 0.040
Sensitivity	0.606
Positive Predictive Value	0.622
Nr of predictions	195

^top

2. Individual counts for Afold [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00064	RNaseP_bact_a links to Rfam database...	0.43	0.43	0.44	38	45364	54	5	44	5	51
ASE_00090	RNaseP_bact_a links to Rfam database...	0.46	0.47	0.47	47	55510	59	6	48	5	54
ASE_00135	RNaseP_bact_a links to Rfam database...	0.45	0.44	0.45	48	63084	63	8	50	5	61
ASE_00153	RNaseP_nuc links to Rfam database...	0.66	0.67	0.65	49	57555	68	2	24	42	24
ASE_00215	RNaseP_bact_a links to Rfam database...	0.54	0.51	0.57	50	48429	39	4	33	2	49
ASE_00305	RNaseP_bact_b links to Rfam database...	0.47	0.47	0.47	40	54529	56	10	36	10	45
ASE_00328	RNaseP_bact_b links to Rfam database...	0.40	0.41	0.40	46	72656	75	3	66	6	66
ASE_00361	RNaseP_bact_a links to Rfam database...	0.51	0.49	0.53	62	75349	59	7	48	4	65
ASE_00427	RNaseP_nuc links to Rfam database...	0.15	0.20	0.12	9	40678	81	17	51	13	37
ASE_00441	RNaseP_bact_a links to Rfam database...	0.77	0.72	0.83	81	64163	30	1	16	13	31
CRW_00548	5S_rRNA links to Rfam database...	0.83	0.76	0.91	29	7349	6	0	3	3	9
CRW_00552	5S_rRNA links to Rfam database...	0.32	0.31	0.34	12	7105	26	2	21	3	27
CRW_00555	5S_rRNA links to Rfam database...	0.71	0.65	0.79	26	7593	8	0	7	1	14
CRW_00567	5S_rRNA links to Rfam database...	0.69	0.63	0.76	25	7470	10	2	6	2	15
CRW_00570	5S_rRNA links to Rfam database...	0.83	0.84	0.82	31	6865	10	0	7	3	6
CRW_01484	5S_rRNA links to Rfam database...	0.18	0.18	0.18	7	7464	34	4	28	2	32
CRW_01485	5S_rRNA links to Rfam database...	0.18	0.18	0.19	7	7467	30	2	27	1	32
CRW_01487	5S_rRNA links to Rfam database...	0.21	0.20	0.24	8	7469	26	3	23	0	33
CRW_01489	5S_rRNA links to Rfam database...	0.82	0.74	0.91	29	7471	6	0	3	3	10
CRW_01491	5S_rRNA links to Rfam database...	0.70	0.63	0.79	27	8351	11	0	7	4	16
CRW_01497	5S_rRNA links to Rfam database...	0.54	0.45	0.64	18	7112	14	0	10	4	22
CRW_01498	5S_rRNA links to Rfam database...	0.88	0.81	0.95	35	8091	4	0	2	2	8
CRW_01499	5S_rRNA links to Rfam database...	0.45	0.44	0.47	18	7963	21	3	17	1	23
CRW_01500	5S_rRNA links to Rfam database...	0.86	0.79	0.94	30	7718	6	0	2	4	8
CRW_01508	5S_rRNA links to Rfam database...	0.83	0.79	0.87	33	7963	11	0	5	6	9
CRW_01536	5S_rRNA links to Rfam database...	0.88	0.86	0.89	32	6985	4	0	4	0	5
CRW_01537	5S_rRNA links to Rfam database...	0.70	0.65	0.75	24	7108	14	0	8	6	13
CRW_01539	5S_rRNA links to Rfam database...	0.81	0.76	0.88	28	7108	10	0	4	6	9
CRW_01541	5S_rRNA links to Rfam database...	0.29	0.30	0.29	11	7102	28	6	21	1	26
CRW_01548	5S_rRNA links to Rfam database...	0.74	0.70	0.79	26	6988	12	0	7	5	11
CRW_01559	5S_rRNA links to Rfam database...	0.76	0.73	0.79	27	7226	13	0	7	6	10
CRW_01562	5S_rRNA links to Rfam database...	0.70	0.68	0.74	25	7106	12	1	8	3	12
CRW_01563	5S_rRNA links to Rfam database...	0.57	0.51	0.63	19	6873	12	2	9	1	18
CRW_01566	5S_rRNA links to Rfam database...	0.66	0.65	0.67	24	7104	15	0	12	3	13
CRW_01570	5S_rRNA links to Rfam database...	0.75	0.70	0.81	26	7108	12	0	6	6	11
CRW_01572	5S_rRNA links to Rfam database...	0.31	0.30	0.33	11	6988	22	4	18	0	26
CRW_01578	5S_rRNA links to Rfam database...	0.78	0.73	0.84	27	7108	10	0	5	5	10
CRW_01580	5S_rRNA links to Rfam database...	0.56	0.49	0.64	18	7112	16	0	10	6	19
CRW_01581	5S_rRNA links to Rfam database...	0.17	0.16	0.19	6	7109	25	2	23	0	31
CRW_01583	5S_rRNA links to Rfam database...	0.79	0.76	0.82	28	7106	10	0	6	4	9
CRW_01590	5S_rRNA links to Rfam database...	0.21	0.22	0.21	8	7102	30	6	24	0	29
CRW_01603	5S_rRNA links to Rfam database...	0.82	0.78	0.85	29	7106	8	0	5	3	8
CRW_01605	5S_rRNA links to Rfam database...	0.73	0.70	0.76	26	7106	13	0	8	5	11
CRW_01608	5S_rRNA links to Rfam database...	0.27	0.27	0.28	10	8349	27	1	25	1	27
CRW_01620	5S_rRNA links to Rfam database...	0.86	0.86	0.86	32	6984	8	0	5	3	5
CRW_01621	5S_rRNA links to Rfam database...	0.64	0.62	0.66	23	7105	16	0	12	4	14
CRW_01623	5S_rRNA links to Rfam database...	0.78	0.73	0.84	27	7108	6	0	5	1	10
PDB_00012	mir-TAR links to Rfam database...	1.00	1.00	1.00	7	399	3	0	0	3	0
PDB_00213	Gammaretro_CES links to Rfam database...	0.87	0.80	0.94	33	5015	2	0	2	0	8
PDB_00402	tRNA links to Rfam database...	0.15	0.17	0.15	4	2748	23	2	21	0	19
PDB_00431	tRNA links to Rfam database...	0.65	0.65	0.65	13	2191	9	0	7	2	7
PDB_00553	mir-TAR links to Rfam database...	1.00	1.00	1.00	11	454	0	0	0	0	0
PDB_00571	tRNA links to Rfam database...	-0.01	0.00	0.00	0	3302	20	5	14	1	25
PDB_00741	Entero_5_CRE links to Rfam database...	0.87	0.76	1.00	13	690	0	0	0	0	4
PDB_00810	s2m links to Rfam database...	0.77	0.71	0.86	12	1067	2	0	2	0	5
PDB_00828	Purine links to Rfam database...	0.88	0.78	1.00	21	2464	0	0	0	0	6
PDB_00829	Purine links to Rfam database...	0.82	0.71	0.94	17	2260	1	0	1	0	7
PDB_00876	HIV_FE links to Rfam database...	0.97	0.95	1.00	19	971	0	0	0	0	1
PDB_01050	UnaL2 links to Rfam database...	0.96	0.92	1.00	12	618	2	0	0	2	1
PDB_01053	tRNA links to Rfam database...	0.94	0.94	0.94	15	1362	1	0	1	0	1
PDB_01152	HIV_FS2 links to Rfam database...	0.96	0.93	1.00	13	548	0	0	0	0	1
RFA_00389	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00390	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00391	Hammerhead_3 links to Rfam database...	0.93	0.87	1.00	13	1418	2	0	0	2	2
RFA_00396	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	2	0	0	2	1
RFA_00402	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	1	0	0	1	0
RFA_00409	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	2	0	0	2	1
RFA_00416	Hammerhead_3 links to Rfam database...	0.93	0.93	0.93	14	1470	4	0	1	3	1
RFA_00433	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00434	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00436	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00440	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1470	2	0	0	2	0
RFA_00442	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00444	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1525	2	0	0	2	0
RFA_00583	Y_RNA links to Rfam database...	0.41	0.40	0.43	6	4936	22	0	8	14	9
RFA_00585	Y_RNA links to Rfam database...	0.87	0.87	0.87	13	4836	13	0	2	11	2
RFA_00587	Y_RNA links to Rfam database...	0.87	0.87	0.87	13	4836	14	0	2	12	2
RFA_00588	Y_RNA links to Rfam database...	0.79	0.73	0.85	11	4547	14	0	2	12	4
RFA_00589	Y_RNA links to Rfam database...	0.79	0.73	0.85	11	4358	18	0	2	16	4
RFA_00594	Y_RNA links to Rfam database...	0.83	0.80	0.86	12	2761	13	0	2	11	3
RFA_00596	Y_RNA links to Rfam database...	0.00	0.00	0.00	0	5980	24	4	11	9	15
RFA_00658	Hammerhead_1 links to Rfam database...	0.69	0.64	0.75	9	1116	5	0	3	2	5
RFA_00664	Hammerhead_1 links to Rfam database...	0.07	0.07	0.09	1	979	11	0	10	1	13
RFA_00667	Hammerhead_1 links to Rfam database...	0.30	0.29	0.33	4	978	8	1	7	0	10
RFA_00668	Hammerhead_1 links to Rfam database...	0.41	0.43	0.40	6	975	9	0	9	0	8
RFA_00672	Hammerhead_1 links to Rfam database...	0.17	0.15	0.20	2	893	9	0	8	1	11
RFA_00673	Hammerhead_1 links to Rfam database...	0.42	0.36	0.50	5	1118	6	0	5	1	9
RFA_00674	Hammerhead_1 links to Rfam database...	0.69	0.71	0.67	10	1113	6	0	5	1	4
RFA_00675	Hammerhead_1 links to Rfam database...	0.29	0.29	0.31	4	977	9	1	8	0	10
RFA_00677	Hammerhead_1 links to Rfam database...	0.42	0.43	0.43	6	976	9	0	8	1	8
RFA_00678	Hammerhead_1 links to Rfam database...	0.66	0.64	0.69	9	933	4	0	4	0	5
RFA_00680	Hammerhead_1 links to Rfam database...	0.74	0.71	0.77	10	1115	6	0	3	3	4
RFA_00704	Hammerhead_1 links to Rfam database...	0.48	0.43	0.55	6	979	7	0	5	2	8
RFA_00707	Hammerhead_1 links to Rfam database...	0.07	0.07	0.10	1	1025	9	3	6	0	13
RFA_00717	Hammerhead_1 links to Rfam database...	0.64	0.64	0.64	9	889	5	0	5	0	5
RFA_00730	s2m links to Rfam database...	0.69	0.67	0.73	8	892	4	1	2	1	4
RFA_00731	s2m links to Rfam database...	0.66	0.67	0.67	8	891	5	1	3	1	4
RFA_00733	s2m links to Rfam database...	0.66	0.67	0.67	8	891	5	1	3	1	4
RFA_00734	s2m links to Rfam database...	0.61	0.67	0.57	8	889	8	1	5	2	4
RFA_00736	s2m links to Rfam database...	0.66	0.67	0.67	8	891	5	1	3	1	4
RFA_00737	s2m links to Rfam database...	1.00	1.00	1.00	12	891	1	0	0	1	0
RFA_00745	s2m links to Rfam database...	0.66	0.67	0.67	8	934	5	1	3	1	4
RFA_00749	s2m links to Rfam database...	0.66	0.67	0.67	8	891	5	1	3	1	4
RFA_00758	s2m links to Rfam database...	0.96	0.92	1.00	11	892	1	0	0	1	1
RFA_00762	s2m links to Rfam database...	0.64	0.67	0.62	8	890	6	1	4	1	4
RFA_00763	s2m links to Rfam database...	1.00	1.00	1.00	12	891	1	0	0	1	0
RFA_00764	s2m links to Rfam database...	0.66	0.67	0.67	8	891	5	1	3	1	4
RFA_00765	s2m links to Rfam database...	1.00	1.00	1.00	12	891	1	0	0	1	0
RFA_00786	Gammaretro_CES links to Rfam database...	0.71	0.72	0.70	23	5017	12	2	8	2	9
RFA_00791	Gammaretro_CES links to Rfam database...	0.50	0.50	0.52	16	5120	16	3	12	1	16
RFA_00792	Gammaretro_CES links to Rfam database...	0.90	0.88	0.93	28	5020	3	0	2	1	4
RFA_00801	Gammaretro_CES links to Rfam database...	0.59	0.59	0.59	19	5018	14	0	13	1	13
SPR_00074	tRNA links to Rfam database...	0.50	0.50	0.50	10	2830	11	2	8	1	10
SPR_00079	tRNA links to Rfam database...	0.97	0.95	1.00	18	2467	3	0	0	3	1
SPR_00191	tRNA links to Rfam database...	0.18	0.19	0.18	4	2828	18	4	14	0	17
SPR_00333	tRNA links to Rfam database...	-0.01	0.00	0.00	0	2753	22	6	16	0	21
SPR_00504	tRNA links to Rfam database...	0.46	0.50	0.43	10	2827	14	5	8	1	10
SPR_00505	tRNA links to Rfam database...	0.97	0.95	1.00	19	2907	3	0	0	3	1
SPR_00506	tRNA links to Rfam database...	0.97	0.95	1.00	19	2907	1	0	0	1	1
SPR_00509	tRNA links to Rfam database...	0.97	0.95	1.00	19	2907	3	0	0	3	1
SPR_00512	tRNA links to Rfam database...	0.97	0.95	1.00	19	2907	3	0	0	3	1
SPR_00513	tRNA links to Rfam database...	0.97	0.95	1.00	19	2907	1	0	0	1	1
SPR_00518	tRNA links to Rfam database...	0.55	0.55	0.55	11	2906	10	1	8	1	9
SPR_00610	tRNA links to Rfam database...	0.77	0.71	0.83	15	2538	4	0	3	1	6
SRP_00006	Metazoa_SRP links to Rfam database...	0.82	0.81	0.84	82	45655	19	3	13	3	19
SRP_00008	Bacteria_small_SRP links to Rfam database...	0.70	0.72	0.69	18	2900	9	0	8	1	7
SRP_00011	Plant_SRP links to Rfam database...	0.43	0.42	0.45	44	46262	54	4	50	0	60
SRP_00015	Plant_SRP links to Rfam database...	0.54	0.53	0.55	52	46265	48	8	35	5	47
SRP_00024	Bacteria_large_SRP links to Rfam database...	0.68	0.70	0.67	61	37584	31	4	26	1	26
SRP_00026	Bacteria_large_SRP links to Rfam database...	0.58	0.59	0.58	52	36766	46	4	34	8	36
SRP_00030	Bacteria_large_SRP links to Rfam database...	0.74	0.75	0.73	66	36766	26	4	20	2	22
SRP_00031	Bacteria_large_SRP links to Rfam database...	0.64	0.64	0.63	57	36225	37	4	29	4	32
SRP_00037	Bacteria_large_SRP links to Rfam database...	0.60	0.60	0.60	52	36498	37	4	31	2	35
SRP_00038	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	5019	31	2	29	0	33
SRP_00042	Bacteria_small_SRP links to Rfam database...	0.38	0.40	0.37	10	3978	19	1	16	2	15
SRP_00044	Bacteria_small_SRP links to Rfam database...	0.77	0.75	0.80	24	6075	10	1	5	4	8
SRP_00051	Bacteria_small_SRP links to Rfam database...	0.09	0.10	0.09	3	5428	29	1	28	0	27
SRP_00054	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	5531	34	3	31	0	32
SRP_00074	Bacteria_small_SRP links to Rfam database...	0.39	0.41	0.38	12	6523	24	3	17	4	17
SRP_00075	Bacteria_small_SRP links to Rfam database...	0.82	0.79	0.84	27	5533	8	0	5	3	7
SRP_00077	Bacteria_small_SRP links to Rfam database...	0.15	0.16	0.15	6	6630	34	4	30	0	31
SRP_00084	Bacteria_small_SRP links to Rfam database...	0.81	0.82	0.80	28	5425	7	1	6	0	6
SRP_00086	Metazoa_SRP links to Rfam database...	0.71	0.71	0.70	71	44152	31	3	27	1	29
SRP_00088	Bacteria_large_SRP links to Rfam database...	0.67	0.69	0.66	61	34098	32	3	29	0	28
SRP_00089	Bacteria_large_SRP links to Rfam database...	0.82	0.81	0.84	73	35691	14	1	13	0	17
SRP_00090	Bacteria_large_SRP links to Rfam database...	0.69	0.66	0.72	59	35429	25	1	22	2	31
SRP_00094	Bacteria_small_SRP links to Rfam database...	0.86	0.88	0.84	21	4070	4	0	4	0	3
SRP_00095	Bacteria_small_SRP links to Rfam database...	0.81	0.84	0.78	21	3978	6	1	5	0	4
SRP_00098	Bacteria_small_SRP links to Rfam database...	0.66	0.68	0.66	25	6403	14	1	12	1	12
SRP_00105	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	5532	33	4	29	0	34
SRP_00107	Bacteria_small_SRP links to Rfam database...	0.13	0.16	0.12	3	3629	26	6	17	3	16
SRP_00128	Bacteria_small_SRP links to Rfam database...	0.77	0.81	0.74	29	6747	12	1	9	2	7
SRP_00141	Bacteria_small_SRP links to Rfam database...	0.86	0.85	0.88	35	6288	5	1	4	0	6
SRP_00152	Plant_SRP links to Rfam database...	0.56	0.56	0.57	58	45651	45	1	43	1	45
SRP_00161	Bacteria_small_SRP links to Rfam database...	0.80	0.82	0.78	18	2827	5	0	5	0	4
SRP_00162	Bacteria_small_SRP links to Rfam database...	0.81	0.83	0.79	19	2902	6	0	5	1	4
SRP_00164	Bacteria_small_SRP links to Rfam database...	0.87	0.89	0.86	31	6867	6	1	4	1	4
SRP_00171	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	45348	103	15	88	0	88
SRP_00178	Plant_SRP links to Rfam database...	0.83	0.78	0.87	80	45661	14	1	11	2	22
SRP_00181	Plant_SRP links to Rfam database...	0.33	0.31	0.35	32	45964	60	1	59	0	70
SRP_00182	Plant_SRP links to Rfam database...	0.76	0.73	0.79	74	45962	21	3	17	1	27
SRP_00200	Bacteria_small_SRP links to Rfam database...	0.44	0.44	0.43	16	6866	21	2	19	0	20
SRP_00209	Bacteria_small_SRP links to Rfam database...	0.73	0.74	0.71	20	4628	8	0	8	0	7
SRP_00227	Bacteria_small_SRP links to Rfam database...	0.89	0.90	0.88	28	5119	4	1	3	0	3
SRP_00231	Bacteria_small_SRP links to Rfam database...	0.46	0.47	0.46	16	5425	19	1	18	0	18
SRP_00233	Bacteria_small_SRP links to Rfam database...	0.91	0.88	0.94	29	5120	2	0	2	0	4
SRP_00234	Bacteria_large_SRP links to Rfam database...	0.77	0.77	0.78	66	36230	25	1	18	6	20
SRP_00243	Bacteria_small_SRP links to Rfam database...	0.90	0.87	0.93	27	5122	3	0	2	1	4
SRP_00250	Bacteria_small_SRP links to Rfam database...	0.74	0.75	0.73	27	6749	13	1	9	3	9
SRP_00251	Bacteria_small_SRP links to Rfam database...	0.70	0.72	0.68	26	6983	12	1	11	0	10
SRP_00271	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	3215	25	3	22	0	24
SRP_00273	Bacteria_small_SRP links to Rfam database...	0.86	0.88	0.85	35	6745	8	1	5	2	5
SRP_00274	Bacteria_small_SRP links to Rfam database...	0.91	0.92	0.90	35	6864	5	1	3	1	3
SRP_00295	Bacteria_small_SRP links to Rfam database...	0.88	0.87	0.89	33	6866	6	1	3	2	5
SRP_00303	Bacteria_small_SRP links to Rfam database...	0.60	0.63	0.59	20	6636	14	1	13	0	12
SRP_00308	Bacteria_large_SRP links to Rfam database...	0.55	0.55	0.56	48	36229	42	9	29	4	40
SRP_00312	Bacteria_small_SRP links to Rfam database...	0.29	0.30	0.29	8	4158	20	4	16	0	19
SRP_00315	Bacteria_small_SRP links to Rfam database...	0.78	0.78	0.78	18	2903	5	0	5	0	5
SRP_00317	Metazoa_SRP links to Rfam database...	0.93	0.89	0.98	87	45061	10	0	2	8	11
SRP_00318	Bacteria_small_SRP links to Rfam database...	0.78	0.78	0.78	18	2980	5	0	5	0	5
SRP_00325	Bacteria_small_SRP links to Rfam database...	1.00	1.00	1.00	33	4338	0	0	0	0	0
SRP_00335	Bacteria_large_SRP links to Rfam database...	0.32	0.44	0.24	17	35173	76	26	29	21	22
SRP_00337	Bacteria_large_SRP links to Rfam database...	0.73	0.71	0.76	65	35425	23	1	20	2	26
SRP_00338	Bacteria_small_SRP links to Rfam database...	0.92	0.92	0.92	33	5424	4	0	3	1	3
SRP_00347	Metazoa_SRP links to Rfam database...	0.82	0.80	0.84	77	46573	21	3	12	6	19
SRP_00350	Bacteria_small_SRP links to Rfam database...	0.26	0.26	0.27	7	3890	19	2	17	0	20
SRP_00356	Bacteria_small_SRP links to Rfam database...	0.65	0.67	0.65	20	5019	14	2	9	3	10
SRP_00357	Bacteria_small_SRP links to Rfam database...	0.93	0.92	0.94	33	5321	3	1	1	1	3
SRP_00367	Bacteria_small_SRP links to Rfam database...	0.83	0.86	0.81	30	6749	7	2	5	0	5
SRP_00369	Bacteria_small_SRP links to Rfam database...	0.93	0.91	0.94	32	5744	2	1	1	0	3
SRP_00383	Bacteria_small_SRP links to Rfam database...	0.12	0.13	0.13	3	3216	21	3	18	0	21
TMR_00046	tmRNA links to Rfam database...	0.47	0.48	0.46	46	62734	61	10	45	6	50
TMR_00048	tmRNA links to Rfam database...	0.35	0.37	0.34	35	64876	73	9	60	4	60
TMR_00458	tmRNA links to Rfam database...	0.22	0.22	0.23	20	63458	76	7	61	8	73
TMR_00568	tmRNA links to Rfam database...	0.57	0.57	0.58	56	60629	50	3	38	9	43

^top

Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.

Table of contents:

Overview

Performance plots

Performance of RNASampler(20) - scored higher in this pairwise comparison

1. Total counts & total scores for RNASampler(20)

2. Individual counts for RNASampler(20) [ download as .csv ]

Performance of Afold - scored lower in this pairwise comparison

1. Total counts & total scores for Afold

2. Individual counts for Afold [ download as .csv ]