CompaRNA - on-line benchmarks of RNA structure prediction methods

Laboratory of Structural Bioinformatics @ Adam Mickiewicz University in Poznan

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Overview

Metric	RNASampler(seed)		McQFold
MCC	0.629	>	0.524
Average MCC ± 95% Confidence Intervals	0.470 ± 0.066	<	0.512 ± 0.067
Sensitivity	0.468	<	0.496
Positive Predictive Value	0.847	>	0.557
Total TP	1072	<	1135
Total TN	696315	>	695542
Total FP	320	<	1129
Total FP CONTRA	57	<	166
Total FP INCONS	137	<	738
Total FP COMP	126	<	225
Total FN	1217	>	1154
P-value	3.56938820447e-08

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Performance plots

Comparison of performance of RNASampler(seed) and McQFold. Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data (individual counts for RNASampler(seed) and McQFold).
Average Matthews Correlation Coefficients (MCC) with 95% confidence intervals (CIs) were plotted for different RNA families, for which at least 3 members were present in the benchmarking dataset. 'n' denotes the number of MCCs used to calculate the average and CI. See tables below for raw data (individual counts for RNASampler(seed) and McQFold).
Comparison of average Matthews Correlation Coefficients (MCCs) for RNASampler(seed) and McQFold. The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data (individual counts for RNASampler(seed) and McQFold).

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Performance of RNASampler(seed) - scored higher in this pairwise comparison

1. Total counts & total scores for RNASampler(seed)

Total Base Pair Counts
Total TP	1072
Total TN	696315
Total FP	320
Total FP CONTRA	57
Total FP INCONS	137
Total FP COMP	126
Total FN	1217

Total Scores
MCC	0.629
Average MCC ± 95% Confidence Intervals	0.470 ± 0.066
Sensitivity	0.468
Positive Predictive Value	0.847
Nr of predictions	98

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2. Individual counts for RNASampler(seed) [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
PDB_00005	Tymo_tRNA-like links to Rfam database...	0.88	0.79	1.00	11	935	0	0	0	0	3
PDB_00012	mir-TAR links to Rfam database...	1.00	1.00	1.00	7	399	3	0	0	3	0
PDB_00213	Gammaretro_CES links to Rfam database...	0.76	0.59	1.00	24	5026	0	0	0	0	17
PDB_00553	mir-TAR links to Rfam database...	1.00	1.00	1.00	11	454	0	0	0	0	0
PDB_00716	HDV_ribozyme links to Rfam database...	0.50	0.39	0.64	9	2687	6	0	5	1	14
PDB_00810	s2m links to Rfam database...	0.42	0.18	1.00	3	1078	0	0	0	0	14
PDB_01050	UnaL2 links to Rfam database...	0.92	0.85	1.00	11	619	2	0	0	2	2
PDB_01051	Telomerase-cil links to Rfam database...	0.45	0.31	0.67	4	897	6	0	2	4	9
PDB_01092	glmS links to Rfam database...	0.72	0.62	0.84	32	10115	8	0	6	2	20
PDB_01152	HIV_FS2 links to Rfam database...	0.84	0.71	1.00	10	551	0	0	0	0	4
RFA_00390	Hammerhead_3 links to Rfam database...	0.00	0.00	0.00	0	1431	0	0	0	0	15
RFA_00416	Hammerhead_3 links to Rfam database...	0.63	0.40	1.00	6	1479	1	0	0	1	9
RFA_00433	Hammerhead_3 links to Rfam database...	0.63	0.40	1.00	6	1425	1	0	0	1	9
RFA_00587	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4836	5	0	0	5	0
RFA_00603	Telomerase-cil links to Rfam database...	0.63	0.51	0.78	18	13507	8	3	2	3	17
RFA_00604	Telomerase-cil links to Rfam database...	0.73	0.66	0.82	23	13502	14	4	1	9	12
RFA_00605	Telomerase-cil links to Rfam database...	0.41	0.31	0.55	11	15205	11	1	8	2	24
RFA_00606	Telomerase-cil links to Rfam database...	0.44	0.36	0.54	14	21295	18	7	5	6	25
RFA_00607	Telomerase-cil links to Rfam database...	0.71	0.56	0.91	20	17744	9	0	2	7	16
RFA_00609	Telomerase-cil links to Rfam database...	0.82	0.68	1.00	25	17930	6	0	0	6	12
RFA_00610	Telomerase-cil links to Rfam database...	0.81	0.70	0.93	26	17177	9	0	2	7	11
RFA_00611	Telomerase-cil links to Rfam database...	0.68	0.57	0.80	20	13016	8	3	2	3	15
RFA_00613	Telomerase-cil links to Rfam database...	0.58	0.46	0.73	16	12858	6	4	2	0	19
RFA_00615	Telomerase-cil links to Rfam database...	0.63	0.51	0.78	18	13343	5	3	2	0	17
RFA_00620	Telomerase-cil links to Rfam database...	0.52	0.44	0.63	17	21918	15	2	8	5	22
RFA_00626	rne5 links to Rfam database...	0.80	0.64	1.00	56	56560	5	0	0	5	31
RFA_00627	rne5 links to Rfam database...	0.77	0.63	0.93	55	56894	8	0	4	4	32
RFA_00628	rne5 links to Rfam database...	0.78	0.64	0.95	55	57233	12	0	3	9	31
RFA_00630	rne5 links to Rfam database...	0.77	0.66	0.90	57	56890	15	0	6	9	30
RFA_00632	HDV_ribozyme links to Rfam database...	0.78	0.68	0.90	19	4074	2	1	1	0	9
RFA_00636	HDV_ribozyme links to Rfam database...	0.85	0.75	0.95	21	3983	1	1	0	0	7
RFA_00642	Vimentin3 links to Rfam database...	0.58	0.39	0.88	7	2918	1	0	1	0	11
RFA_00643	Vimentin3 links to Rfam database...	0.21	0.17	0.27	3	2200	8	0	8	0	15
RFA_00644	Vimentin3 links to Rfam database...	0.44	0.33	0.60	6	2691	4	1	3	0	12
RFA_00645	Vimentin3 links to Rfam database...	-0.01	0.00	0.00	0	2403	12	3	9	0	18
RFA_00649	Vimentin3 links to Rfam database...	0.44	0.33	0.60	6	2135	4	1	3	0	12
RFA_00651	Vimentin3 links to Rfam database...	0.33	0.22	0.50	4	2072	4	1	3	0	14
RFA_00653	Vimentin3 links to Rfam database...	-0.01	0.00	0.00	0	2133	12	3	9	0	18
RFA_00654	Vimentin3 links to Rfam database...	0.39	0.28	0.56	5	2406	4	1	3	0	13
RFA_00658	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	1128	0	0	0	0	14
RFA_00659	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	1128	0	0	0	0	14
RFA_00664	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	990	0	0	0	0	14
RFA_00667	Hammerhead_1 links to Rfam database...	0.53	0.29	1.00	4	986	0	0	0	0	10
RFA_00668	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	990	0	0	0	0	14
RFA_00672	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	903	0	0	0	0	13
RFA_00673	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	1128	0	0	0	0	14
RFA_00674	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	1128	0	0	0	0	14
RFA_00675	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	990	0	0	0	0	14
RFA_00677	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	990	0	0	0	0	14
RFA_00678	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	946	0	0	0	0	14
RFA_00680	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	1128	0	0	0	0	14
RFA_00684	Hammerhead_1 links to Rfam database...	0.53	0.29	1.00	4	986	0	0	0	0	10
RFA_00685	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	990	0	0	0	0	14
RFA_00695	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	7021	0	0	0	0	14
RFA_00703	Hammerhead_1 links to Rfam database...	0.46	0.21	1.00	3	4275	0	0	0	0	11
RFA_00704	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	987	3	0	3	0	14
RFA_00705	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	1035	0	0	0	0	14
RFA_00706	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	1035	0	0	0	0	14
RFA_00707	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	1035	0	0	0	0	14
RFA_00708	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	1035	0	0	0	0	14
RFA_00709	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	990	0	0	0	0	14
RFA_00710	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	990	0	0	0	0	14
RFA_00711	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	1035	0	0	0	0	14
RFA_00715	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	946	0	0	0	0	14
RFA_00716	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	943	3	0	3	0	14
RFA_00717	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	903	0	0	0	0	14
RFA_00730	s2m links to Rfam database...	0.50	0.25	1.00	3	900	0	0	0	0	9
RFA_00731	s2m links to Rfam database...	0.64	0.42	1.00	5	898	1	0	0	1	7
RFA_00733	s2m links to Rfam database...	0.50	0.25	1.00	3	900	0	0	0	0	9
RFA_00734	s2m links to Rfam database...	0.64	0.42	1.00	5	898	0	0	0	0	7
RFA_00736	s2m links to Rfam database...	0.50	0.25	1.00	3	900	0	0	0	0	9
RFA_00737	s2m links to Rfam database...	0.64	0.42	1.00	5	898	1	0	0	1	7
RFA_00745	s2m links to Rfam database...	0.50	0.25	1.00	3	943	0	0	0	0	9
RFA_00749	s2m links to Rfam database...	0.50	0.25	1.00	3	900	0	0	0	0	9
RFA_00758	s2m links to Rfam database...	0.50	0.25	1.00	3	900	0	0	0	0	9
RFA_00762	s2m links to Rfam database...	0.64	0.42	1.00	5	898	0	0	0	0	7
RFA_00763	s2m links to Rfam database...	0.50	0.25	1.00	3	900	0	0	0	0	9
RFA_00764	s2m links to Rfam database...	0.50	0.25	1.00	3	900	0	0	0	0	9
RFA_00765	s2m links to Rfam database...	0.50	0.25	1.00	3	900	0	0	0	0	9
RFA_00767	Corona_pk3 links to Rfam database...	0.65	0.56	0.77	10	1878	3	3	0	0	8
RFA_00768	Corona_pk3 links to Rfam database...	0.65	0.56	0.77	10	1878	3	3	0	0	8
RFA_00769	Corona_pk3 links to Rfam database...	0.59	0.56	0.63	10	1937	6	1	5	0	8
RFA_00770	Corona_pk3 links to Rfam database...	0.52	0.39	0.70	7	2006	3	3	0	0	11
RFA_00773	Corona_pk3 links to Rfam database...	0.59	0.50	0.69	9	1940	4	4	0	0	9
RFA_00779	Corona_pk3 links to Rfam database...	0.65	0.56	0.77	10	1940	3	3	0	0	8
RFA_00781	Gammaretro_CES links to Rfam database...	0.85	0.72	1.00	23	5027	0	0	0	0	9
RFA_00786	Gammaretro_CES links to Rfam database...	0.79	0.63	1.00	20	5030	0	0	0	0	12
RFA_00791	Gammaretro_CES links to Rfam database...	0.71	0.56	0.90	18	5131	2	0	2	0	14
RFA_00792	Gammaretro_CES links to Rfam database...	0.81	0.72	0.92	23	5025	2	0	2	0	9
RFA_00801	Gammaretro_CES links to Rfam database...	0.74	0.63	0.87	20	5027	4	0	3	1	12
RFA_00808	RydC links to Rfam database...	0.58	0.56	0.60	9	2001	6	0	6	0	7
RFA_00809	RydC links to Rfam database...	0.36	0.38	0.35	6	2128	11	1	10	0	10
RFA_00814	R2_retro_el links to Rfam database...	0.87	0.78	0.97	32	25167	6	0	1	5	9
RFA_00815	R2_retro_el links to Rfam database...	0.88	0.78	1.00	32	24499	8	0	0	8	9
RFA_00816	R2_retro_el links to Rfam database...	0.86	0.76	0.97	31	23188	6	0	1	5	10
RFA_00817	R2_retro_el links to Rfam database...	0.86	0.76	0.97	31	21913	1	0	1	0	10
RFA_00818	R2_retro_el links to Rfam database...	0.86	0.73	1.00	30	20271	6	0	0	6	11
RFA_00819	R2_retro_el links to Rfam database...	0.88	0.78	1.00	32	27934	5	0	0	5	9

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Performance of McQFold - scored lower in this pairwise comparison

1. Total counts & total scores for McQFold

Total Base Pair Counts
Total TP	1135
Total TN	695542
Total FP	1129
Total FP CONTRA	166
Total FP INCONS	738
Total FP COMP	225
Total FN	1154

Total Scores
MCC	0.524
Average MCC ± 95% Confidence Intervals	0.512 ± 0.067
Sensitivity	0.496
Positive Predictive Value	0.557
Nr of predictions	98

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2. Individual counts for McQFold [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
PDB_00005	Tymo_tRNA-like links to Rfam database...	0.88	0.79	1.00	11	935	0	0	0	0	3
PDB_00012	mir-TAR links to Rfam database...	1.00	1.00	1.00	7	399	3	0	0	3	0
PDB_00213	Gammaretro_CES links to Rfam database...	0.72	0.68	0.76	28	5013	9	0	9	0	13
PDB_00553	mir-TAR links to Rfam database...	1.00	1.00	1.00	11	454	0	0	0	0	0
PDB_00716	HDV_ribozyme links to Rfam database...	0.68	0.70	0.67	16	2677	9	0	8	1	7
PDB_00810	s2m links to Rfam database...	0.51	0.41	0.64	7	1070	4	2	2	0	10
PDB_01050	UnaL2 links to Rfam database...	0.92	0.85	1.00	11	619	2	0	0	2	2
PDB_01051	Telomerase-cil links to Rfam database...	0.79	0.69	0.90	9	893	2	0	1	1	4
PDB_01092	glmS links to Rfam database...	0.81	0.75	0.89	39	10109	6	1	4	1	13
PDB_01152	HIV_FS2 links to Rfam database...	0.88	0.79	1.00	11	550	0	0	0	0	3
RFA_00390	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00416	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1470	4	0	0	4	0
RFA_00433	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00587	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4836	8	0	0	8	0
RFA_00603	Telomerase-cil links to Rfam database...	0.34	0.29	0.42	10	13506	15	4	10	1	25
RFA_00604	Telomerase-cil links to Rfam database...	0.71	0.66	0.77	23	13500	14	2	5	7	12
RFA_00605	Telomerase-cil links to Rfam database...	0.36	0.34	0.38	12	15193	31	3	17	11	23
RFA_00606	Telomerase-cil links to Rfam database...	0.32	0.33	0.32	13	21280	34	12	16	6	26
RFA_00607	Telomerase-cil links to Rfam database...	0.65	0.61	0.69	22	17734	17	3	7	7	14
RFA_00609	Telomerase-cil links to Rfam database...	0.77	0.76	0.78	28	17919	18	2	6	10	9
RFA_00610	Telomerase-cil links to Rfam database...	0.56	0.57	0.55	21	17167	25	2	15	8	16
RFA_00611	Telomerase-cil links to Rfam database...	0.58	0.54	0.61	19	13010	12	3	9	0	16
RFA_00613	Telomerase-cil links to Rfam database...	0.15	0.14	0.16	5	12848	27	6	21	0	30
RFA_00615	Telomerase-cil links to Rfam database...	0.32	0.29	0.37	10	13339	18	4	13	1	25
RFA_00620	Telomerase-cil links to Rfam database...	0.36	0.38	0.34	15	21901	37	4	25	8	24
RFA_00626	rne5 links to Rfam database...	0.21	0.22	0.21	19	56526	76	15	56	5	68
RFA_00627	rne5 links to Rfam database...	0.42	0.40	0.44	35	56873	47	13	32	2	52
RFA_00628	rne5 links to Rfam database...	0.42	0.41	0.43	35	57209	50	7	40	3	51
RFA_00630	rne5 links to Rfam database...	0.63	0.63	0.63	55	56865	41	6	27	8	32
RFA_00632	HDV_ribozyme links to Rfam database...	0.88	0.89	0.86	25	4066	4	3	1	0	3
RFA_00636	HDV_ribozyme links to Rfam database...	0.73	0.71	0.74	20	3978	7	5	2	0	8
RFA_00642	Vimentin3 links to Rfam database...	-0.01	0.00	0.00	0	2913	13	1	12	0	18
RFA_00643	Vimentin3 links to Rfam database...	-0.01	0.00	0.00	0	2196	15	1	14	0	18
RFA_00644	Vimentin3 links to Rfam database...	-0.01	0.00	0.00	0	2684	17	3	14	0	18
RFA_00645	Vimentin3 links to Rfam database...	-0.01	0.00	0.00	0	2403	12	3	9	0	18
RFA_00649	Vimentin3 links to Rfam database...	0.78	0.67	0.92	12	2132	1	0	1	0	6
RFA_00651	Vimentin3 links to Rfam database...	0.40	0.33	0.50	6	2068	6	0	6	0	12
RFA_00653	Vimentin3 links to Rfam database...	0.33	0.33	0.33	6	2127	12	3	9	0	12
RFA_00654	Vimentin3 links to Rfam database...	-0.01	0.00	0.00	0	2403	12	2	10	0	18
RFA_00658	Hammerhead_1 links to Rfam database...	0.59	0.50	0.70	7	1118	5	0	3	2	7
RFA_00659	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	1125	5	0	3	2	14
RFA_00664	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	980	11	0	10	1	14
RFA_00667	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	981	10	1	8	1	14
RFA_00668	Hammerhead_1 links to Rfam database...	0.50	0.43	0.60	6	980	4	0	4	0	8
RFA_00672	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	895	10	0	8	2	13
RFA_00673	Hammerhead_1 links to Rfam database...	0.47	0.36	0.63	5	1120	4	0	3	1	9
RFA_00674	Hammerhead_1 links to Rfam database...	0.96	0.93	1.00	13	1115	1	0	0	1	1
RFA_00675	Hammerhead_1 links to Rfam database...	0.28	0.29	0.29	4	976	10	1	9	0	10
RFA_00677	Hammerhead_1 links to Rfam database...	0.74	0.71	0.77	10	977	6	0	3	3	4
RFA_00678	Hammerhead_1 links to Rfam database...	0.53	0.29	1.00	4	942	0	0	0	0	10
RFA_00680	Hammerhead_1 links to Rfam database...	0.74	0.71	0.77	10	1115	6	0	3	3	4
RFA_00684	Hammerhead_1 links to Rfam database...	0.84	0.71	1.00	10	980	1	0	0	1	4
RFA_00685	Hammerhead_1 links to Rfam database...	0.47	0.36	0.63	5	982	4	0	3	1	9
RFA_00695	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	7007	29	4	10	15	14
RFA_00703	Hammerhead_1 links to Rfam database...	0.44	0.43	0.46	6	4265	19	1	6	12	8
RFA_00704	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	983	8	0	7	1	14
RFA_00705	Hammerhead_1 links to Rfam database...	0.74	0.71	0.77	10	1022	4	0	3	1	4
RFA_00706	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	1030	5	0	5	0	14
RFA_00707	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	1030	5	0	5	0	14
RFA_00708	Hammerhead_1 links to Rfam database...	0.40	0.29	0.57	4	1028	4	0	3	1	10
RFA_00709	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	984	7	0	6	1	14
RFA_00710	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	980	10	0	10	0	14
RFA_00711	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	1023	12	0	12	0	14
RFA_00715	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	936	10	0	10	0	14
RFA_00716	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	936	10	0	10	0	14
RFA_00717	Hammerhead_1 links to Rfam database...	0.69	0.64	0.75	9	891	3	0	3	0	5
RFA_00730	s2m links to Rfam database...	0.43	0.42	0.45	5	892	7	1	5	1	7
RFA_00731	s2m links to Rfam database...	0.48	0.42	0.56	5	894	5	1	3	1	7
RFA_00733	s2m links to Rfam database...	0.43	0.42	0.45	5	892	7	1	5	1	7
RFA_00734	s2m links to Rfam database...	0.67	0.58	0.78	7	894	3	0	2	1	5
RFA_00736	s2m links to Rfam database...	0.48	0.42	0.56	5	894	5	1	3	1	7
RFA_00737	s2m links to Rfam database...	0.43	0.42	0.45	5	892	7	0	6	1	7
RFA_00745	s2m links to Rfam database...	0.43	0.42	0.45	5	935	7	1	5	1	7
RFA_00749	s2m links to Rfam database...	0.48	0.42	0.56	5	894	5	1	3	1	7
RFA_00758	s2m links to Rfam database...	0.40	0.33	0.50	4	895	4	2	2	0	8
RFA_00762	s2m links to Rfam database...	0.31	0.33	0.31	4	890	9	2	7	0	8
RFA_00763	s2m links to Rfam database...	0.43	0.42	0.45	5	892	7	1	5	1	7
RFA_00764	s2m links to Rfam database...	0.43	0.42	0.45	5	892	7	1	5	1	7
RFA_00765	s2m links to Rfam database...	0.51	0.42	0.63	5	895	4	0	3	1	7
RFA_00767	Corona_pk3 links to Rfam database...	1.00	1.00	1.00	18	1873	0	0	0	0	0
RFA_00768	Corona_pk3 links to Rfam database...	1.00	1.00	1.00	18	1873	0	0	0	0	0
RFA_00769	Corona_pk3 links to Rfam database...	0.85	0.94	0.77	17	1931	5	4	1	0	1
RFA_00770	Corona_pk3 links to Rfam database...	0.88	0.78	1.00	14	2002	4	0	0	4	4
RFA_00773	Corona_pk3 links to Rfam database...	0.97	1.00	0.95	18	1934	5	1	0	4	0
RFA_00779	Corona_pk3 links to Rfam database...	0.97	0.94	1.00	17	1936	0	0	0	0	1
RFA_00781	Gammaretro_CES links to Rfam database...	0.97	0.94	1.00	30	5020	1	0	0	1	2
RFA_00786	Gammaretro_CES links to Rfam database...	0.21	0.19	0.25	6	5026	19	2	16	1	26
RFA_00791	Gammaretro_CES links to Rfam database...	0.60	0.56	0.64	18	5123	11	0	10	1	14
RFA_00792	Gammaretro_CES links to Rfam database...	0.97	0.94	1.00	30	5020	1	0	0	1	2
RFA_00801	Gammaretro_CES links to Rfam database...	0.69	0.63	0.77	20	5024	8	0	6	2	12
RFA_00808	RydC links to Rfam database...	1.00	1.00	1.00	16	2000	0	0	0	0	0
RFA_00809	RydC links to Rfam database...	0.79	0.81	0.76	13	2128	4	0	4	0	3
RFA_00814	R2_retro_el links to Rfam database...	0.79	0.80	0.77	33	25157	21	0	10	11	8
RFA_00815	R2_retro_el links to Rfam database...	0.56	0.59	0.53	24	24486	27	1	20	6	17
RFA_00816	R2_retro_el links to Rfam database...	0.82	0.85	0.80	35	23176	12	4	5	3	6
RFA_00817	R2_retro_el links to Rfam database...	0.35	0.39	0.31	16	21894	39	9	26	4	25
RFA_00818	R2_retro_el links to Rfam database...	0.28	0.27	0.29	11	20263	30	12	15	3	30
RFA_00819	R2_retro_el links to Rfam database...	0.30	0.29	0.31	12	27927	50	4	23	23	29

^top

Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.

Table of contents:

Overview

Performance plots

Performance of RNASampler(seed) - scored higher in this pairwise comparison

1. Total counts & total scores for RNASampler(seed)

2. Individual counts for RNASampler(seed) [ download as .csv ]

Performance of McQFold - scored lower in this pairwise comparison

1. Total counts & total scores for McQFold

2. Individual counts for McQFold [ download as .csv ]