CompaRNA - on-line benchmarks of RNA structure prediction methods

Laboratory of Structural Bioinformatics @ Adam Mickiewicz University in Poznan

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Overview

Metric	RNAalifold(20)		Contrafold
MCC	0.687	>	0.554
Average MCC ± 95% Confidence Intervals	0.732 ± 0.016	>	0.657 ± 0.018
Sensitivity	0.600	>	0.536
Positive Predictive Value	0.787	>	0.572
Total TP	42122	>	37666
Total TN	119788148	>	119775853
Total FP	13654	<	33163
Total FP CONTRA	2054	<	4192
Total FP INCONS	9359	<	23972
Total FP COMP	2241	<	4999
Total FN	28112	<	32568
P-value	3.56938820447e-08

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Performance plots

Comparison of performance of RNAalifold(20) and Contrafold. Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data (individual counts for RNAalifold(20) and Contrafold).
Average Matthews Correlation Coefficients (MCC) with 95% confidence intervals (CIs) were plotted for different RNA families, for which at least 3 members were present in the benchmarking dataset. 'n' denotes the number of MCCs used to calculate the average and CI. See tables below for raw data (individual counts for RNAalifold(20) and Contrafold).
Comparison of average Matthews Correlation Coefficients (MCCs) for RNAalifold(20) and Contrafold. The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data (individual counts for RNAalifold(20) and Contrafold).

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Performance of RNAalifold(20) - scored higher in this pairwise comparison

1. Total counts & total scores for RNAalifold(20)

Total Base Pair Counts
Total TP	42122
Total TN	119788148
Total FP	13654
Total FP CONTRA	2054
Total FP INCONS	9359
Total FP COMP	2241
Total FN	28112

Total Scores
MCC	0.687
Average MCC ± 95% Confidence Intervals	0.732 ± 0.016
Sensitivity	0.600
Positive Predictive Value	0.787
Nr of predictions	642

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2. Individual counts for RNAalifold(20) [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00004	RNaseP_bact_a links to Rfam database...	0.58	0.45	0.75	44	47836	15	1	14	0	53
ASE_00005	RNaseP_bact_a links to Rfam database...	0.64	0.49	0.85	57	57903	10	1	9	0	60
ASE_00006	RNaseP_bact_a links to Rfam database...	0.68	0.56	0.83	52	47523	12	0	11	1	41
ASE_00007	RNaseP_bact_a links to Rfam database...	0.75	0.63	0.90	69	59608	8	1	7	0	41
ASE_00012	RNaseP_bact_a links to Rfam database...	0.55	0.45	0.68	55	73839	30	1	25	4	68
ASE_00018	RNaseP_bact_a links to Rfam database...	0.74	0.60	0.91	80	80513	8	3	5	0	54
ASE_00020	RNaseP_bact_a links to Rfam database...	0.49	0.35	0.70	44	73857	20	7	12	1	82
ASE_00021	RNaseP_bact_a links to Rfam database...	0.54	0.41	0.73	65	104107	28	4	20	4	95
ASE_00022	RNaseP_bact_b links to Rfam database...	0.74	0.62	0.89	77	82941	16	0	10	6	47
ASE_00028	RNaseP_bact_b links to Rfam database...	0.76	0.62	0.93	78	84582	10	1	5	4	48
ASE_00035	RNaseP_bact_a links to Rfam database...	0.67	0.54	0.83	64	70423	19	2	11	6	54
ASE_00037	RNaseP_bact_a links to Rfam database...	0.72	0.62	0.83	68	59258	18	0	14	4	42
ASE_00038	RNaseP_bact_a links to Rfam database...	0.65	0.51	0.81	52	53564	12	1	11	0	49
ASE_00040	RNaseP_bact_a links to Rfam database...	0.69	0.55	0.86	73	78918	13	1	11	1	60
ASE_00041	RNaseP_bact_a links to Rfam database...	0.73	0.65	0.82	70	57545	15	0	15	0	38
ASE_00042	RNaseP_bact_a links to Rfam database...	0.52	0.39	0.70	57	90018	25	1	24	0	88
ASE_00044	RNaseP_bact_a links to Rfam database...	0.74	0.63	0.88	66	54540	9	1	8	0	39
ASE_00045	RNaseP_bact_b links to Rfam database...	0.73	0.69	0.77	55	47207	21	2	14	5	25
ASE_00064	RNaseP_bact_a links to Rfam database...	0.72	0.61	0.84	54	45387	13	0	10	3	35
ASE_00068	RNaseP_bact_a links to Rfam database...	0.73	0.55	0.96	47	37626	2	2	0	0	38
ASE_00074	RNaseP_bact_a links to Rfam database...	0.72	0.61	0.86	72	67812	14	0	12	2	47
ASE_00075	RNaseP_bact_a links to Rfam database...	0.55	0.40	0.76	65	108725	27	3	18	6	97
ASE_00077	RNaseP_bact_a links to Rfam database...	0.79	0.65	0.97	56	45092	5	1	1	3	30
ASE_00078	RNaseP_bact_a links to Rfam database...	0.77	0.70	0.84	58	43002	11	3	8	0	25
ASE_00080	RNaseP_bact_a links to Rfam database...	0.43	0.32	0.59	39	71565	27	3	24	0	84
ASE_00081	RNaseP_bact_a links to Rfam database...	0.72	0.56	0.93	54	49712	4	0	4	0	43
ASE_00082	RNaseP_bact_a links to Rfam database...	0.49	0.34	0.72	39	70446	21	1	14	6	77
ASE_00083	RNaseP_bact_a links to Rfam database...	0.77	0.62	0.96	68	62410	4	2	1	1	42
ASE_00084	RNaseP_bact_a links to Rfam database...	0.61	0.51	0.75	50	53561	17	4	13	0	49
ASE_00087	RNaseP_bact_a links to Rfam database...	0.64	0.44	0.93	64	88341	5	0	5	0	80
ASE_00090	RNaseP_bact_a links to Rfam database...	0.72	0.55	0.93	56	55551	4	0	4	0	45
ASE_00092	RNaseP_bact_a links to Rfam database...	0.73	0.58	0.93	65	63476	6	1	4	1	48
ASE_00099	RNaseP_bact_a links to Rfam database...	0.76	0.64	0.90	77	64534	11	0	9	2	43
ASE_00104	RNaseP_bact_a links to Rfam database...	0.66	0.54	0.81	64	64182	15	2	13	0	55
ASE_00105	RNaseP_bact_a links to Rfam database...	0.62	0.49	0.78	54	64192	18	2	13	3	57
ASE_00107	RNaseP_bact_a links to Rfam database...	0.72	0.58	0.90	74	73071	8	0	8	0	53
ASE_00114	RNaseP_bact_b links to Rfam database...	0.68	0.65	0.70	50	45380	31	0	21	10	27
ASE_00115	RNaseP_bact_a links to Rfam database...	0.73	0.60	0.88	61	54546	12	1	7	4	40
ASE_00118	RNaseP_bact_a links to Rfam database...	0.58	0.44	0.78	45	60668	14	4	9	1	57
ASE_00119	RNaseP_bact_a links to Rfam database...	0.57	0.41	0.80	44	62780	11	3	8	0	64
ASE_00123	RNaseP_bact_a links to Rfam database...	0.67	0.54	0.84	46	38448	9	2	7	0	39
ASE_00125	RNaseP_bact_a links to Rfam database...	0.70	0.55	0.89	48	39286	6	0	6	0	40
ASE_00126	RNaseP_bact_a links to Rfam database...	0.81	0.71	0.94	58	40408	4	0	4	0	24
ASE_00128	RNaseP_bact_a links to Rfam database...	0.74	0.60	0.91	60	53235	6	0	6	0	40
ASE_00129	RNaseP_bact_a links to Rfam database...	0.65	0.49	0.86	54	62772	9	3	6	0	57
ASE_00131	RNaseP_bact_a links to Rfam database...	0.62	0.48	0.80	41	39289	10	3	7	0	44
ASE_00134	RNaseP_bact_a links to Rfam database...	0.64	0.52	0.80	49	50342	12	3	9	0	46
ASE_00135	RNaseP_bact_a links to Rfam database...	0.49	0.38	0.63	41	63125	24	1	23	0	68
ASE_00136	RNaseP_bact_a links to Rfam database...	0.80	0.67	0.95	62	48140	3	2	1	0	30
ASE_00137	RNaseP_bact_a links to Rfam database...	0.62	0.45	0.85	44	48464	9	2	6	1	54
ASE_00138	RNaseP_bact_a links to Rfam database...	0.71	0.62	0.81	50	40408	15	0	12	3	31
ASE_00140	RNaseP_bact_a links to Rfam database...	0.69	0.51	0.93	64	70807	5	1	4	0	61
ASE_00142	RNaseP_bact_a links to Rfam database...	0.70	0.58	0.84	71	67076	16	0	14	2	51
ASE_00146	RNaseP_bact_a links to Rfam database...	0.78	0.67	0.91	83	70785	11	1	7	3	41
ASE_00153	RNaseP_nuc links to Rfam database...	0.41	0.34	0.50	25	57580	28	1	24	3	48
ASE_00161	RNaseP_bact_b links to Rfam database...	0.83	0.80	0.86	70	53547	17	0	11	6	17
ASE_00163	RNaseP_bact_a links to Rfam database...	0.64	0.52	0.79	48	53240	13	4	9	0	45
ASE_00165	RNaseP_bact_a links to Rfam database...	0.66	0.48	0.91	48	52922	6	1	4	1	53
ASE_00170	RNaseP_bact_a links to Rfam database...	0.62	0.53	0.74	49	48762	18	4	13	1	44
ASE_00171	RNaseP_bact_a links to Rfam database...	0.60	0.46	0.80	43	48462	11	4	7	0	51
ASE_00172	RNaseP_bact_a links to Rfam database...	0.80	0.67	0.95	71	58921	7	3	1	3	35
ASE_00174	RNaseP_bact_a links to Rfam database...	0.56	0.41	0.75	45	61015	15	2	13	0	64
ASE_00175	RNaseP_bact_a links to Rfam database...	0.61	0.50	0.74	54	59958	19	3	16	0	53
ASE_00179	RNaseP_bact_a links to Rfam database...	0.78	0.68	0.90	57	44190	6	2	4	0	27
ASE_00180	RNaseP_bact_a links to Rfam database...	0.66	0.53	0.82	53	51295	12	4	8	0	47
ASE_00181	RNaseP_bact_a links to Rfam database...	0.58	0.42	0.80	45	57574	12	3	8	1	61
ASE_00182	RNaseP_bact_a links to Rfam database...	0.44	0.29	0.68	39	84198	18	4	14	0	97
ASE_00183	RNaseP_bact_a links to Rfam database...	0.55	0.39	0.79	44	61369	12	4	8	0	69
ASE_00184	RNaseP_bact_a links to Rfam database...	0.65	0.50	0.84	51	54554	10	3	7	0	51
ASE_00185	RNaseP_bact_a links to Rfam database...	0.70	0.51	0.97	65	73469	2	1	1	0	63
ASE_00186	RNaseP_bact_a links to Rfam database...	0.62	0.49	0.79	65	78921	19	2	15	2	67
ASE_00190	RNaseP_bact_b links to Rfam database...	0.64	0.52	0.78	47	45391	17	0	13	4	43
ASE_00197	RNaseP_bact_a links to Rfam database...	0.50	0.37	0.69	53	89176	24	0	24	0	92
ASE_00198	RNaseP_bact_a links to Rfam database...	0.68	0.54	0.86	55	52586	9	1	8	0	47
ASE_00203	RNaseP_bact_a links to Rfam database...	0.65	0.51	0.83	49	46606	10	2	8	0	47
ASE_00212	RNaseP_bact_a links to Rfam database...	0.64	0.49	0.84	73	93874	17	0	14	3	75
ASE_00214	RNaseP_bact_a links to Rfam database...	0.69	0.51	0.93	53	56223	5	0	4	1	50
ASE_00215	RNaseP_bact_a links to Rfam database...	0.69	0.49	0.96	49	48465	2	2	0	0	50
ASE_00216	RNaseP_bact_a links to Rfam database...	0.77	0.61	0.96	50	39288	3	0	2	1	32
ASE_00217	RNaseP_bact_a links to Rfam database...	0.78	0.67	0.91	60	40404	7	2	4	1	30
ASE_00221	RNaseP_bact_a links to Rfam database...	0.78	0.68	0.89	80	64530	10	1	9	0	37
ASE_00228	RNaseP_bact_a links to Rfam database...	0.70	0.62	0.79	53	46904	15	5	9	1	33
ASE_00229	RNaseP_bact_a links to Rfam database...	0.74	0.61	0.90	53	42427	8	0	6	2	34
ASE_00231	RNaseP_bact_a links to Rfam database...	0.59	0.46	0.76	44	47837	18	0	14	4	52
ASE_00232	RNaseP_bact_a links to Rfam database...	0.78	0.65	0.93	55	38444	4	0	4	0	29
ASE_00234	RNaseP_bact_a links to Rfam database...	0.50	0.32	0.77	41	75413	12	3	9	0	88
ASE_00238	RNaseP_bact_a links to Rfam database...	0.59	0.46	0.78	52	64194	16	0	15	1	62
ASE_00241	RNaseP_bact_a links to Rfam database...	0.70	0.60	0.83	52	43893	14	3	8	3	35
ASE_00242	RNaseP_bact_a links to Rfam database...	0.73	0.62	0.87	69	60996	11	1	9	1	43
ASE_00248	RNaseP_bact_a links to Rfam database...	0.73	0.62	0.87	71	62399	11	3	8	0	43
ASE_00254	RNaseP_bact_a links to Rfam database...	0.79	0.68	0.92	56	36795	6	0	5	1	26
ASE_00255	RNaseP_bact_a links to Rfam database...	0.49	0.40	0.60	52	74605	35	1	33	1	78
ASE_00257	RNaseP_bact_a links to Rfam database...	0.62	0.52	0.75	50	50973	17	3	14	0	47
ASE_00263	RNaseP_bact_a links to Rfam database...	0.61	0.44	0.85	53	70438	9	1	8	0	67
ASE_00267	RNaseP_bact_a links to Rfam database...	0.82	0.75	0.89	66	45076	9	3	5	1	22
ASE_00270	RNaseP_bact_a links to Rfam database...	0.30	0.18	0.50	23	72344	25	1	22	2	105
ASE_00274	RNaseP_bact_a links to Rfam database...	0.50	0.36	0.69	37	55557	17	5	12	0	66
ASE_00277	RNaseP_bact_a links to Rfam database...	0.48	0.37	0.62	34	48150	21	4	17	0	57
ASE_00279	RNaseP_bact_a links to Rfam database...	0.74	0.60	0.91	61	53234	6	0	6	0	40
ASE_00280	RNaseP_bact_a links to Rfam database...	0.68	0.55	0.84	54	51939	10	1	9	0	44
ASE_00281	RNaseP_bact_a links to Rfam database...	0.87	0.76	0.99	67	44483	1	0	1	0	21
ASE_00282	RNaseP_bact_a links to Rfam database...	0.59	0.43	0.82	54	77749	12	3	9	0	73
ASE_00283	RNaseP_bact_a links to Rfam database...	0.65	0.51	0.83	55	61710	11	2	9	0	52
ASE_00284	RNaseP_bact_a links to Rfam database...	0.70	0.53	0.92	57	58249	5	0	5	0	51
ASE_00285	RNaseP_bact_a links to Rfam database...	0.63	0.48	0.84	58	68937	11	2	9	0	64
ASE_00286	RNaseP_bact_a links to Rfam database...	0.79	0.66	0.94	61	46600	4	0	4	0	31
ASE_00287	RNaseP_bact_a links to Rfam database...	0.63	0.48	0.84	49	54888	9	1	8	0	54
ASE_00292	RNaseP_bact_a links to Rfam database...	0.69	0.56	0.85	77	81719	14	3	11	0	61
ASE_00294	RNaseP_bact_a links to Rfam database...	0.64	0.47	0.87	81	114388	14	2	10	2	90
ASE_00296	RNaseP_bact_a links to Rfam database...	0.62	0.47	0.81	68	91722	16	3	13	0	77
ASE_00297	RNaseP_bact_a links to Rfam database...	0.69	0.52	0.93	51	52920	7	0	4	3	47
ASE_00298	RNaseP_bact_a links to Rfam database...	0.65	0.51	0.83	58	67458	12	5	7	0	55
ASE_00305	RNaseP_bact_b links to Rfam database...	0.70	0.62	0.79	53	54548	24	1	13	10	32
ASE_00318	RNaseP_bact_b links to Rfam database...	0.74	0.60	0.91	71	80122	17	2	5	10	47
ASE_00321	RNaseP_bact_b links to Rfam database...	0.81	0.74	0.88	65	54541	20	1	8	11	23
ASE_00328	RNaseP_bact_b links to Rfam database...	0.71	0.64	0.77	72	72678	27	5	16	6	40
ASE_00332	RNaseP_bact_a links to Rfam database...	0.76	0.63	0.92	87	81715	8	0	8	0	51
ASE_00335	RNaseP_bact_b links to Rfam database...	0.70	0.62	0.80	72	75376	24	5	13	6	44
ASE_00340	RNaseP_bact_a links to Rfam database...	0.65	0.55	0.76	47	45994	15	7	8	0	38
ASE_00342	RNaseP_bact_a links to Rfam database...	0.72	0.61	0.86	70	62400	14	3	8	3	45
ASE_00353	RNaseP_bact_a links to Rfam database...	0.65	0.50	0.84	53	57907	10	1	9	0	54
ASE_00361	RNaseP_bact_a links to Rfam database...	0.69	0.51	0.93	65	75396	5	1	4	0	62
ASE_00362	RNaseP_bact_a links to Rfam database...	0.75	0.63	0.90	57	48142	6	2	4	0	34
ASE_00363	RNaseP_bact_a links to Rfam database...	0.72	0.63	0.83	59	51289	12	2	10	0	35
ASE_00364	RNaseP_bact_a links to Rfam database...	0.55	0.39	0.77	41	54232	12	1	11	0	64
ASE_00366	RNaseP_bact_a links to Rfam database...	0.51	0.37	0.71	36	58602	16	1	14	1	62
ASE_00367	RNaseP_bact_a links to Rfam database...	0.78	0.65	0.93	56	43011	4	0	4	0	30
ASE_00369	RNaseP_bact_a links to Rfam database...	0.69	0.57	0.84	61	55872	12	3	9	0	46
ASE_00370	RNaseP_bact_a links to Rfam database...	0.66	0.51	0.84	43	41854	8	0	8	0	41
ASE_00372	RNaseP_bact_a links to Rfam database...	0.74	0.62	0.87	62	51932	9	0	9	0	38
ASE_00374	RNaseP_bact_a links to Rfam database...	0.74	0.59	0.93	52	44794	4	0	4	0	36
ASE_00376	RNaseP_bact_a links to Rfam database...	0.73	0.58	0.92	61	56887	6	0	5	1	44
ASE_00377	RNaseP_bact_a links to Rfam database...	0.73	0.59	0.90	63	57560	7	0	7	0	44
ASE_00379	RNaseP_bact_a links to Rfam database...	0.75	0.62	0.90	55	45995	6	2	4	0	34
ASE_00382	RNaseP_bact_a links to Rfam database...	0.70	0.60	0.82	50	41844	11	2	9	0	34
ASE_00383	RNaseP_bact_a links to Rfam database...	0.77	0.66	0.90	69	54538	11	3	5	3	36
ASE_00384	RNaseP_bact_a links to Rfam database...	0.74	0.59	0.93	54	48458	4	0	4	0	38
ASE_00386	RNaseP_bact_a links to Rfam database...	0.75	0.64	0.90	61	50335	7	2	5	0	35
ASE_00387	RNaseP_bact_a links to Rfam database...	0.74	0.61	0.90	63	55875	7	0	7	0	41
ASE_00388	RNaseP_bact_a links to Rfam database...	0.73	0.61	0.87	54	45691	10	1	7	2	35
ASE_00390	RNaseP_bact_a links to Rfam database...	0.73	0.60	0.88	51	42137	7	0	7	0	34
ASE_00393	RNaseP_bact_a links to Rfam database...	0.67	0.58	0.78	54	47826	16	2	13	1	39
ASE_00394	RNaseP_bact_a links to Rfam database...	0.68	0.56	0.83	52	46908	11	3	8	0	41
ASE_00395	RNaseP_bact_a links to Rfam database...	0.87	0.79	0.97	66	41548	2	0	2	0	18
ASE_00396	RNaseP_bact_a links to Rfam database...	0.74	0.63	0.88	52	41557	7	0	7	0	31
ASE_00397	RNaseP_bact_a links to Rfam database...	0.78	0.64	0.96	67	54545	5	3	0	2	38
ASE_00398	RNaseP_bact_a links to Rfam database...	0.63	0.48	0.82	50	55884	12	3	8	1	54
ASE_00400	RNaseP_bact_a links to Rfam database...	0.78	0.66	0.92	70	57894	11	3	3	5	36
ASE_00401	RNaseP_bact_a links to Rfam database...	0.54	0.37	0.81	46	76971	11	3	8	0	80
ASE_00402	RNaseP_bact_a links to Rfam database...	0.78	0.66	0.93	56	42426	4	0	4	0	29
ASE_00403	RNaseP_bact_a links to Rfam database...	0.69	0.51	0.93	55	55886	4	0	4	0	52
ASE_00404	RNaseP_bact_a links to Rfam database...	0.77	0.64	0.93	54	43013	5	1	3	1	31
ASE_00406	RNaseP_bact_a links to Rfam database...	0.69	0.56	0.84	53	48765	10	1	9	0	41
ASE_00411	RNaseP_bact_a links to Rfam database...	0.64	0.52	0.79	46	49397	12	7	5	0	43
ASE_00412	RNaseP_bact_a links to Rfam database...	0.61	0.49	0.76	51	58244	20	0	16	4	54
ASE_00413	RNaseP_bact_a links to Rfam database...	0.60	0.52	0.70	42	44491	21	4	14	3	39
ASE_00415	RNaseP_bact_a links to Rfam database...	0.55	0.40	0.76	41	54892	14	0	13	1	62
ASE_00416	RNaseP_bact_a links to Rfam database...	0.70	0.60	0.83	76	77329	16	2	14	0	51
ASE_00419	RNaseP_bact_a links to Rfam database...	0.56	0.40	0.79	41	54894	11	2	9	0	62
ASE_00422	RNaseP_bact_a links to Rfam database...	0.69	0.59	0.82	55	46904	13	0	12	1	39
ASE_00423	RNaseP_bact_a links to Rfam database...	0.70	0.61	0.80	67	56869	18	3	14	1	42
ASE_00427	RNaseP_nuc links to Rfam database...	0.69	0.65	0.73	30	40714	23	4	7	12	16
ASE_00428	RNaseP_bact_a links to Rfam database...	0.66	0.54	0.80	68	76551	17	1	16	0	57
ASE_00430	RNaseP_bact_a links to Rfam database...	0.69	0.57	0.83	55	46905	12	0	11	1	42
ASE_00437	RNaseP_bact_a links to Rfam database...	0.45	0.36	0.58	48	79318	35	2	33	0	87
ASE_00441	RNaseP_bact_a links to Rfam database...	0.55	0.38	0.80	43	64207	15	0	11	4	69
ASE_00448	RNaseP_bact_a links to Rfam database...	0.77	0.70	0.86	78	64170	13	1	12	0	34
ASE_00451	RNaseP_bact_a links to Rfam database...	0.70	0.56	0.86	70	70795	11	3	8	0	55
CRW_00024	SSU_rRNA_archaea links to Rfam database...	0.87	0.84	0.90	385	1085172	61	7	37	17	73
CRW_00034	SSU_rRNA_bacteria links to Rfam database...	0.83	0.78	0.87	371	1141890	74	12	43	19	103
CRW_00048	SSU_rRNA_bacteria links to Rfam database...	0.83	0.80	0.86	374	1170779	75	11	51	13	96
CRW_00054	SSU_rRNA_bacteria links to Rfam database...	0.84	0.82	0.87	372	1107390	68	12	42	14	84
CRW_00059	SSU_rRNA_bacteria links to Rfam database...	0.81	0.76	0.86	361	1172324	71	11	50	10	112
CRW_00061	SSU_rRNA_bacteria links to Rfam database...	0.85	0.80	0.90	382	1181529	55	14	28	13	94
CRW_00068	SSU_rRNA_bacteria links to Rfam database...	0.86	0.83	0.89	381	1108875	61	12	37	12	76
CRW_00096	SSU_rRNA_bacteria links to Rfam database...	0.85	0.81	0.90	376	1178461	63	6	37	20	89
CRW_00140	SSU_rRNA_bacteria links to Rfam database...	0.84	0.82	0.87	380	1135841	71	13	44	14	83
CRW_00141	SSU_rRNA_bacteria links to Rfam database...	0.82	0.78	0.87	371	1201597	71	12	45	14	105
CRW_00150	SSU_rRNA_bacteria links to Rfam database...	0.84	0.80	0.88	372	1152500	62	12	37	13	94
CRW_00152	SSU_rRNA_bacteria links to Rfam database...	0.79	0.75	0.82	355	1179984	91	17	60	14	116
CRW_00166	SSU_rRNA_bacteria links to Rfam database...	0.83	0.79	0.88	368	1190777	71	7	44	20	100
CRW_00173	SSU_rRNA_bacteria links to Rfam database...	0.77	0.75	0.80	332	1082242	94	12	70	12	113
CRW_00177	SSU_rRNA_bacteria links to Rfam database...	0.80	0.76	0.84	358	1178455	78	13	54	11	115
CRW_00196	SSU_rRNA_bacteria links to Rfam database...	0.82	0.79	0.86	373	1207803	68	15	44	9	102
CRW_00230	SSU_rRNA_bacteria links to Rfam database...	0.83	0.79	0.88	378	1198495	67	12	41	14	100
CRW_00245	SSU_rRNA_bacteria links to Rfam database...	0.86	0.83	0.89	378	1105903	56	14	33	9	75
CRW_00248	SSU_rRNA_bacteria links to Rfam database...	0.79	0.75	0.83	364	1218705	87	17	55	15	120
CRW_00250	SSU_rRNA_bacteria links to Rfam database...	0.83	0.78	0.88	373	1198502	61	12	39	10	105
CRW_00256	SSU_rRNA_bacteria links to Rfam database...	0.82	0.78	0.87	363	1192322	68	14	41	13	105
CRW_00270	SSU_rRNA_bacteria links to Rfam database...	0.85	0.83	0.88	376	1111859	66	12	39	15	79
CRW_00271	SSU_rRNA_bacteria links to Rfam database...	0.82	0.79	0.87	363	1122332	69	11	45	13	99
CRW_00273	SSU_rRNA_bacteria links to Rfam database...	0.84	0.81	0.87	360	1085185	68	13	43	12	86
CRW_00275	SSU_rRNA_bacteria links to Rfam database...	0.84	0.81	0.87	368	1114849	68	12	42	14	89
CRW_00277	SSU_rRNA_bacteria links to Rfam database...	0.82	0.79	0.85	359	1110374	76	14	48	14	94
CRW_00278	SSU_rRNA_bacteria links to Rfam database...	0.82	0.78	0.86	349	1129851	72	10	46	16	101
CRW_00279	SSU_rRNA_bacteria links to Rfam database...	0.81	0.78	0.85	360	1179994	80	12	50	18	104
CRW_00280	SSU_rRNA_bacteria links to Rfam database...	0.83	0.79	0.87	360	1117845	71	12	43	16	93
CRW_00281	SSU_rRNA_bacteria links to Rfam database...	0.82	0.78	0.85	363	1144916	75	12	50	13	101
CRW_00284	SSU_rRNA_bacteria links to Rfam database...	0.84	0.80	0.89	363	1131350	62	12	35	15	93
CRW_00285	SSU_rRNA_bacteria links to Rfam database...	0.83	0.79	0.88	364	1117844	66	13	39	14	94
CRW_00289	SSU_rRNA_bacteria links to Rfam database...	0.81	0.76	0.86	361	1189232	70	13	47	10	115
CRW_00298	SSU_rRNA_eukarya links to Rfam database...	0.43	0.38	0.49	187	1620517	224	43	153	28	307
CRW_00301	SSU_rRNA_eukarya links to Rfam database...	0.42	0.37	0.48	192	1762101	229	37	173	19	327
CRW_00306	SSU_rRNA_eukarya links to Rfam database...	0.42	0.38	0.46	176	1445467	237	39	168	30	286
CRW_00310	SSU_rRNA_eukarya links to Rfam database...	0.46	0.39	0.55	204	1805579	190	29	138	23	317
CRW_00326	SSU_rRNA_eukarya links to Rfam database...	0.41	0.35	0.47	178	1627730	219	36	166	17	324
CRW_00330	SSU_rRNA_eukarya links to Rfam database...	0.40	0.35	0.47	182	1988624	243	35	174	34	335
CRW_00332	SSU_rRNA_eukarya links to Rfam database...	0.39	0.34	0.43	164	1769642	239	35	180	24	313
CRW_00333	SSU_rRNA_eukarya links to Rfam database...	0.34	0.29	0.40	150	1892114	241	34	187	20	364
CRW_00345	SSU_rRNA_eukarya links to Rfam database...	0.43	0.38	0.48	189	1586477	222	39	166	17	309
CRW_00346	SSU_rRNA_eukarya links to Rfam database...	0.45	0.40	0.50	202	1584688	230	32	168	30	299
CRW_00348	SSU_rRNA_eukarya links to Rfam database...	0.43	0.38	0.48	190	1615106	228	41	166	21	313
CRW_00358	SSU_rRNA_eukarya links to Rfam database...	0.43	0.38	0.49	192	1674972	227	34	167	26	315
CRW_00366	SSU_rRNA_eukarya links to Rfam database...	0.39	0.34	0.45	166	1579381	248	30	176	42	316
CRW_00370	SSU_rRNA_eukarya links to Rfam database...	0.52	0.47	0.57	240	1640342	204	34	150	20	266
CRW_00371	SSU_rRNA_eukarya links to Rfam database...	0.43	0.38	0.49	187	1611527	222	27	169	26	309
CRW_00372	SSU_rRNA_eukarya links to Rfam database...	0.40	0.35	0.46	174	1625925	228	37	170	21	324
CRW_00379	SSU_rRNA_eukarya links to Rfam database...	0.40	0.34	0.47	179	2126574	228	31	169	28	355
CRW_00386	SSU_rRNA_eukarya links to Rfam database...	0.44	0.37	0.51	193	1750879	199	35	149	15	322
CRW_00403	SSU_rRNA_eukarya links to Rfam database...	0.39	0.37	0.42	170	1606127	272	38	193	41	294
CRW_00411	SSU_rRNA_eukarya links to Rfam database...	0.43	0.39	0.48	191	1615105	227	43	164	20	305
CRW_00414	SSU_rRNA_eukarya links to Rfam database...	0.38	0.35	0.41	171	1665811	266	36	207	23	324
CRW_00466	SSU_rRNA_bacteria links to Rfam database...	0.84	0.81	0.86	373	1116333	74	11	48	15	85
CRW_00548	5S_rRNA links to Rfam database...	0.89	0.79	1.00	30	7351	2	0	0	2	8
CRW_00552	5S_rRNA links to Rfam database...	0.82	0.67	1.00	26	7114	1	0	0	1	13
CRW_00555	5S_rRNA links to Rfam database...	0.77	0.60	1.00	24	7602	1	0	0	1	16
CRW_00567	5S_rRNA links to Rfam database...	0.84	0.70	1.00	28	7475	1	0	0	1	12
CRW_00570	5S_rRNA links to Rfam database...	0.90	0.86	0.94	32	6869	5	0	2	3	5
CRW_00573	5S_rRNA links to Rfam database...	0.82	0.68	1.00	27	7113	1	0	0	1	13
CRW_00589	SSU_rRNA_bacteria links to Rfam database...	0.86	0.81	0.91	361	1094062	61	7	30	24	84
CRW_00590	SSU_rRNA_bacteria links to Rfam database...	0.84	0.79	0.89	358	1119354	70	6	38	26	94
CRW_00591	SSU_rRNA_bacteria links to Rfam database...	0.87	0.83	0.91	368	1098500	61	9	26	26	78
CRW_00598	SSU_rRNA_eukarya links to Rfam database...	0.42	0.38	0.47	187	1665825	229	39	174	16	304
CRW_00758	SSU_rRNA_eukarya links to Rfam database...	0.48	0.43	0.53	210	1640373	205	34	149	22	273
CRW_00759	SSU_rRNA_eukarya links to Rfam database...	0.42	0.38	0.48	182	1636762	232	39	162	31	299
CRW_00760	SSU_rRNA_eukarya links to Rfam database...	0.43	0.37	0.50	179	1638594	209	38	144	27	307
CRW_00772	SSU_rRNA_bacteria links to Rfam database...	0.78	0.74	0.83	298	945642	94	6	54	34	106
CRW_00789	SSU_rRNA_bacteria links to Rfam database...	0.82	0.78	0.87	348	1137388	80	6	44	30	99
CRW_00795	SSU_rRNA_bacteria links to Rfam database...	0.74	0.70	0.79	276	1152572	131	10	63	58	118
CRW_00849	SSU_rRNA_bacteria links to Rfam database...	0.78	0.74	0.82	350	1117832	97	13	65	19	120
CRW_00997	SSU_rRNA_bacteria links to Rfam database...	0.84	0.81	0.88	374	1135854	61	12	38	11	90
CRW_01153	SSU_rRNA_eukarya links to Rfam database...	0.47	0.42	0.53	210	1606133	216	27	158	31	293
CRW_01171	SSU_rRNA_eukarya links to Rfam database...	0.44	0.38	0.50	193	1593619	210	32	161	17	313
CRW_01300	SSU_rRNA_eukarya links to Rfam database...	0.52	0.45	0.59	231	1693331	174	31	127	16	284
CRW_01484	5S_rRNA links to Rfam database...	0.82	0.67	1.00	26	7477	1	0	0	1	13
CRW_01485	5S_rRNA links to Rfam database...	0.89	0.79	1.00	31	7472	2	0	0	2	8
CRW_01487	5S_rRNA links to Rfam database...	0.81	0.68	0.97	28	7474	1	0	1	0	13
CRW_01489	5S_rRNA links to Rfam database...	0.80	0.64	1.00	25	7478	0	0	0	0	14
CRW_01491	5S_rRNA links to Rfam database...	0.79	0.63	1.00	27	8358	0	0	0	0	16
CRW_01492	5S_rRNA links to Rfam database...	0.74	0.60	0.93	25	7599	2	0	2	0	17
CRW_01494	5S_rRNA links to Rfam database...	0.74	0.55	1.00	22	7118	0	0	0	0	18
CRW_01497	5S_rRNA links to Rfam database...	0.72	0.55	0.96	22	7117	1	0	1	0	18
CRW_01498	5S_rRNA links to Rfam database...	0.79	0.63	1.00	27	8101	0	0	0	0	16
CRW_01499	5S_rRNA links to Rfam database...	0.73	0.56	0.96	23	7977	1	0	1	0	18
CRW_01500	5S_rRNA links to Rfam database...	0.79	0.63	1.00	24	7726	0	0	0	0	14
CRW_01501	5S_rRNA links to Rfam database...	0.73	0.58	0.93	26	8487	2	0	2	0	19
CRW_01508	5S_rRNA links to Rfam database...	0.83	0.69	1.00	29	7972	0	0	0	0	13
CRW_01532	5S_rRNA links to Rfam database...	0.94	0.89	1.00	33	7107	2	0	0	2	4
CRW_01533	5S_rRNA links to Rfam database...	0.82	0.70	0.96	26	7113	2	0	1	1	11
CRW_01534	5S_rRNA links to Rfam database...	0.86	0.78	0.94	29	7109	5	0	2	3	8
CRW_01535	5S_rRNA links to Rfam database...	0.89	0.81	0.97	30	7109	4	0	1	3	7
CRW_01536	5S_rRNA links to Rfam database...	0.94	0.89	1.00	33	6988	1	0	0	1	4
CRW_01537	5S_rRNA links to Rfam database...	0.90	0.86	0.94	32	7106	3	0	2	1	5
CRW_01539	5S_rRNA links to Rfam database...	0.92	0.89	0.94	33	7105	5	0	2	3	4
CRW_01540	5S_rRNA links to Rfam database...	0.92	0.89	0.94	33	7105	5	0	2	3	4
CRW_01541	5S_rRNA links to Rfam database...	0.74	0.59	0.92	22	7116	5	0	2	3	15
CRW_01542	5S_rRNA links to Rfam database...	0.90	0.86	0.94	32	7106	4	0	2	2	5
CRW_01544	5S_rRNA links to Rfam database...	0.87	0.81	0.94	30	7108	3	0	2	1	7
CRW_01548	5S_rRNA links to Rfam database...	0.90	0.86	0.94	32	6987	5	0	2	3	5
CRW_01555	5S_rRNA links to Rfam database...	0.92	0.89	0.94	33	9010	2	0	2	0	4
CRW_01556	5S_rRNA links to Rfam database...	0.66	0.54	0.80	20	7115	7	0	5	2	17
CRW_01557	5S_rRNA links to Rfam database...	0.89	0.84	0.94	31	7107	5	0	2	3	6
CRW_01559	5S_rRNA links to Rfam database...	0.94	0.89	1.00	33	7227	0	0	0	0	4
CRW_01562	5S_rRNA links to Rfam database...	0.82	0.70	0.96	26	7113	2	0	1	1	11
CRW_01563	5S_rRNA links to Rfam database...	0.73	0.70	0.76	26	6869	10	0	8	2	11
CRW_01566	5S_rRNA links to Rfam database...	0.66	0.43	1.00	16	7124	0	0	0	0	21
CRW_01568	5S_rRNA links to Rfam database...	0.89	0.84	0.94	31	7107	3	0	2	1	6
CRW_01569	5S_rRNA links to Rfam database...	0.87	0.81	0.94	30	7108	2	0	2	0	7
CRW_01570	5S_rRNA links to Rfam database...	0.91	0.84	1.00	31	7109	1	0	0	1	6
CRW_01572	5S_rRNA links to Rfam database...	0.82	0.78	0.85	29	6987	8	0	5	3	8
CRW_01573	5S_rRNA links to Rfam database...	0.89	0.84	0.94	31	7227	3	0	2	1	6
CRW_01578	5S_rRNA links to Rfam database...	0.90	0.86	0.94	32	7106	4	0	2	2	5
CRW_01580	5S_rRNA links to Rfam database...	0.90	0.86	0.94	32	7106	2	0	2	0	5
CRW_01581	5S_rRNA links to Rfam database...	0.90	0.81	1.00	30	7110	1	0	0	1	7
CRW_01583	5S_rRNA links to Rfam database...	0.92	0.89	0.94	33	7105	5	0	2	3	4
CRW_01584	5S_rRNA links to Rfam database...	0.87	0.81	0.94	30	7108	3	0	2	1	7
CRW_01590	5S_rRNA links to Rfam database...	0.82	0.73	0.93	27	7111	5	0	2	3	10
CRW_01593	5S_rRNA links to Rfam database...	0.89	0.84	0.94	31	7107	3	0	2	1	6
CRW_01595	5S_rRNA links to Rfam database...	0.89	0.84	0.94	31	8482	5	0	2	3	6
CRW_01599	5S_rRNA links to Rfam database...	0.87	0.81	0.94	30	7108	5	0	2	3	7
CRW_01603	5S_rRNA links to Rfam database...	0.74	0.59	0.92	22	7116	5	0	2	3	15
CRW_01605	5S_rRNA links to Rfam database...	0.90	0.86	0.94	32	7106	4	0	2	2	5
CRW_01606	5S_rRNA links to Rfam database...	0.85	0.76	0.97	28	7111	4	0	1	3	9
CRW_01608	5S_rRNA links to Rfam database...	0.90	0.86	0.94	32	8351	3	0	2	1	5
CRW_01616	5S_rRNA links to Rfam database...	0.94	0.89	1.00	33	7107	1	0	0	1	4
CRW_01617	5S_rRNA links to Rfam database...	0.90	0.86	0.94	32	7106	4	0	2	2	5
CRW_01620	5S_rRNA links to Rfam database...	0.97	0.95	1.00	35	6986	3	0	0	3	2
CRW_01621	5S_rRNA links to Rfam database...	0.74	0.59	0.92	22	7116	4	0	2	2	15
CRW_01623	5S_rRNA links to Rfam database...	0.89	0.84	0.94	31	7107	3	0	2	1	6
CRW_01625	5S_rRNA links to Rfam database...	0.68	0.59	0.79	22	7112	9	0	6	3	15
PDB_00012	mir-TAR links to Rfam database...	1.00	1.00	1.00	7	399	2	0	0	2	0
PDB_00070	tRNA links to Rfam database...	0.93	0.88	1.00	21	2829	0	0	0	0	3
PDB_00213	Gammaretro_CES links to Rfam database...	0.77	0.63	0.93	26	5022	2	0	2	0	15
PDB_00229	tRNA links to Rfam database...	0.93	0.87	1.00	20	2755	0	0	0	0	3
PDB_00327	tRNA links to Rfam database...	0.96	0.91	1.00	21	3060	0	0	0	0	2
PDB_00362	tRNA links to Rfam database...	0.98	0.95	1.00	21	2829	0	0	0	0	1
PDB_00402	tRNA links to Rfam database...	0.96	0.91	1.00	21	2754	0	0	0	0	2
PDB_00431	tRNA links to Rfam database...	0.95	0.90	1.00	18	2193	0	0	0	0	2
PDB_00474	tRNA links to Rfam database...	0.96	0.91	1.00	21	2680	0	0	0	0	2
PDB_00553	mir-TAR links to Rfam database...	0.53	0.36	0.80	4	460	1	0	1	0	7
PDB_00571	tRNA links to Rfam database...	0.87	0.80	0.95	20	3300	1	1	0	0	5
PDB_00667	tRNA links to Rfam database...	0.98	0.95	1.00	21	2829	0	0	0	0	1
PDB_00703	SSU_rRNA_bacteria links to Rfam database...	0.78	0.71	0.86	353	1073436	80	10	46	24	142
PDB_00741	Entero_5_CRE links to Rfam database...	0.72	0.53	1.00	9	694	0	0	0	0	8
PDB_00810	s2m links to Rfam database...	0.63	0.53	0.75	9	1069	4	0	3	1	8
PDB_00828	Purine links to Rfam database...	0.84	0.70	1.00	19	2466	0	0	0	0	8
PDB_00829	Purine links to Rfam database...	0.86	0.75	1.00	18	2260	0	0	0	0	6
PDB_00854	SSU_rRNA_bacteria links to Rfam database...	0.75	0.65	0.86	347	1500373	97	7	51	39	188
PDB_00876	HIV_FE links to Rfam database...	0.45	0.40	0.53	8	975	7	0	7	0	12
PDB_01002	tRNA links to Rfam database...	0.93	0.86	1.00	18	2757	2	0	0	2	3
PDB_01020	Purine links to Rfam database...	0.86	0.74	1.00	17	2261	1	0	0	1	6
PDB_01050	UnaL2 links to Rfam database...	0.68	0.46	1.00	6	624	2	0	0	2	7
PDB_01053	tRNA links to Rfam database...	1.00	1.00	1.00	16	1362	0	0	0	0	0
PDB_01073	SAM links to Rfam database...	0.80	0.65	1.00	22	4349	1	0	0	1	12
PDB_01088	SSU_rRNA_bacteria links to Rfam database...	0.73	0.62	0.86	341	1471072	93	2	55	36	206
PDB_01103	SSU_rRNA_bacteria links to Rfam database...	0.75	0.65	0.87	364	1606111	77	8	45	24	198
PDB_01105	SSU_rRNA_bacteria links to Rfam database...	0.76	0.67	0.87	360	1433555	85	3	53	29	180
PDB_01114	TPP links to Rfam database...	0.86	0.74	1.00	20	2830	0	0	0	0	7
PDB_01120	SSU_rRNA_bacteria links to Rfam database...	0.72	0.65	0.80	341	1204702	101	13	72	16	186
PDB_01152	HIV_FS2 links to Rfam database...	0.76	0.64	0.90	9	551	1	0	1	0	5
PDB_01236	ykoK links to Rfam database...	0.87	0.78	0.98	42	11585	4	0	1	3	12
PDB_01273	SSU_rRNA_bacteria links to Rfam database...	0.78	0.71	0.86	347	1117857	83	8	48	27	144
RFA_00389	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	2	0	0	2	1
RFA_00390	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	3	0	0	3	1
RFA_00391	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	2	0	0	2	1
RFA_00396	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	2	0	0	2	1
RFA_00402	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	2	0	0	2	1
RFA_00409	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	2	0	0	2	1
RFA_00416	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1471	2	0	0	2	1
RFA_00433	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00434	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	2	0	0	2	1
RFA_00436	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	1	0	0	1	1
RFA_00440	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1471	3	0	0	3	1
RFA_00442	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	2	0	0	2	1
RFA_00444	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1526	2	0	0	2	1
RFA_00583	Y_RNA links to Rfam database...	0.97	0.93	1.00	14	4936	0	0	0	0	1
RFA_00584	Y_RNA links to Rfam database...	0.93	0.87	1.00	13	2913	1	0	0	1	2
RFA_00585	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4836	0	0	0	0	0
RFA_00586	Y_RNA links to Rfam database...	0.97	0.93	1.00	14	3902	1	0	0	1	1
RFA_00587	Y_RNA links to Rfam database...	0.97	0.93	1.00	14	4837	0	0	0	0	1
RFA_00588	Y_RNA links to Rfam database...	0.97	0.93	1.00	14	4546	0	0	0	0	1
RFA_00589	Y_RNA links to Rfam database...	0.97	0.93	1.00	14	4357	3	0	0	3	1
RFA_00594	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	2760	1	0	0	1	0
RFA_00596	Y_RNA links to Rfam database...	0.93	0.87	1.00	13	5982	4	0	0	4	2
RFA_00599	Telomerase-vert links to Rfam database...	0.75	0.65	0.87	72	101392	18	0	11	7	39
RFA_00601	Telomerase-vert links to Rfam database...	0.75	0.66	0.85	75	99147	17	0	13	4	39
RFA_00602	Telomerase-vert links to Rfam database...	0.65	0.54	0.78	63	101394	21	0	18	3	53
RFA_00658	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	1128	0	0	0	0	14
RFA_00664	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	990	0	0	0	0	14
RFA_00667	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	990	0	0	0	0	14
RFA_00668	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	990	0	0	0	0	14
RFA_00672	Hammerhead_1 links to Rfam database...	0.55	0.31	1.00	4	899	0	0	0	0	9
RFA_00673	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	1128	0	0	0	0	14
RFA_00674	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	1128	0	0	0	0	14
RFA_00675	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	990	0	0	0	0	14
RFA_00677	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	990	0	0	0	0	14
RFA_00678	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	946	0	0	0	0	14
RFA_00680	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	1128	0	0	0	0	14
RFA_00704	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	990	0	0	0	0	14
RFA_00707	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	1035	0	0	0	0	14
RFA_00715	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	946	0	0	0	0	14
RFA_00717	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	903	0	0	0	0	14
RFA_00730	s2m links to Rfam database...	0.75	0.75	0.75	9	891	4	0	3	1	3
RFA_00731	s2m links to Rfam database...	0.91	0.83	1.00	10	893	0	0	0	0	2
RFA_00733	s2m links to Rfam database...	1.00	1.00	1.00	12	891	0	0	0	0	0
RFA_00734	s2m links to Rfam database...	0.75	0.75	0.75	9	891	4	0	3	1	3
RFA_00736	s2m links to Rfam database...	1.00	1.00	1.00	12	891	0	0	0	0	0
RFA_00737	s2m links to Rfam database...	0.75	0.75	0.75	9	891	4	0	3	1	3
RFA_00745	s2m links to Rfam database...	0.75	0.75	0.75	9	934	4	0	3	1	3
RFA_00749	s2m links to Rfam database...	0.75	0.75	0.75	9	891	4	0	3	1	3
RFA_00758	s2m links to Rfam database...	0.75	0.75	0.75	9	891	5	0	3	2	3
RFA_00762	s2m links to Rfam database...	1.00	1.00	1.00	12	891	0	0	0	0	0
RFA_00763	s2m links to Rfam database...	1.00	1.00	1.00	12	891	1	0	0	1	0
RFA_00764	s2m links to Rfam database...	1.00	1.00	1.00	12	891	0	0	0	0	0
RFA_00765	s2m links to Rfam database...	0.75	0.75	0.75	9	891	4	0	3	1	3
RFA_00786	Gammaretro_CES links to Rfam database...	0.68	0.63	0.74	20	5023	7	1	6	0	12
RFA_00791	Gammaretro_CES links to Rfam database...	0.68	0.63	0.74	20	5124	7	1	6	0	12
RFA_00792	Gammaretro_CES links to Rfam database...	0.68	0.63	0.74	20	5023	7	1	6	0	12
RFA_00801	Gammaretro_CES links to Rfam database...	0.68	0.63	0.74	20	5023	7	1	6	0	12
SPR_00007	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00009	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	1	0	0	1	0
SPR_00010	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00012	tRNA links to Rfam database...	0.97	0.95	1.00	19	2831	1	0	0	1	1
SPR_00013	tRNA links to Rfam database...	0.97	0.95	1.00	19	2831	1	0	0	1	1
SPR_00016	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00017	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00025	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	1	0	0	1	0
SPR_00026	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00027	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00036	tRNA links to Rfam database...	0.89	0.80	1.00	16	2759	1	0	0	1	4
SPR_00045	tRNA links to Rfam database...	0.88	0.86	0.90	19	2829	2	0	2	0	3
SPR_00064	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00065	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00066	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00068	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00070	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00074	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	1	0	0	1	0
SPR_00079	tRNA links to Rfam database...	0.89	0.79	1.00	15	2470	0	0	0	0	4
SPR_00086	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00087	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	1	0	0	1	0
SPR_00088	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	1	0	0	1	0
SPR_00089	tRNA links to Rfam database...	0.97	0.95	1.00	19	2831	1	0	0	1	1
SPR_00090	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	1	0	0	1	0
SPR_00091	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	1	0	0	1	0
SPR_00095	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00111	tRNA links to Rfam database...	1.00	1.00	1.00	21	2680	0	0	0	0	0
SPR_00112	tRNA links to Rfam database...	1.00	1.00	1.00	21	2680	0	0	0	0	0
SPR_00115	tRNA links to Rfam database...	1.00	1.00	1.00	21	2680	0	0	0	0	0
SPR_00117	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00139	tRNA links to Rfam database...	0.95	0.90	1.00	19	2907	0	0	0	0	2
SPR_00153	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00155	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00156	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00176	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	1	0	0	1	0
SPR_00177	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00178	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00191	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00200	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00224	tRNA links to Rfam database...	1.00	1.00	1.00	20	3721	0	0	0	0	0
SPR_00271	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00273	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00276	tRNA links to Rfam database...	0.98	0.95	1.00	20	2906	0	0	0	0	1
SPR_00277	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00294	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00295	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	0	0	0	0	0
SPR_00314	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00315	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00317	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	1	0	0	1	0
SPR_00318	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00321	tRNA links to Rfam database...	1.00	1.00	1.00	21	2982	0	0	0	0	0
SPR_00333	tRNA links to Rfam database...	0.98	0.95	1.00	20	2755	0	0	0	0	1
SPR_00352	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00353	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00357	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00358	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	1	0	0	1	0
SPR_00370	tRNA links to Rfam database...	0.95	0.90	1.00	19	2756	0	0	0	0	2
SPR_00386	tRNA links to Rfam database...	1.00	1.00	1.00	20	4166	0	0	0	0	0
SPR_00414	tRNA links to Rfam database...	1.00	1.00	1.00	21	3549	4	0	0	4	0
SPR_00415	tRNA links to Rfam database...	1.00	1.00	1.00	21	3549	4	0	0	4	0
SPR_00417	tRNA links to Rfam database...	0.95	0.91	1.00	20	3550	4	0	0	4	2
SPR_00418	tRNA links to Rfam database...	0.95	0.91	1.00	20	3550	4	0	0	4	2
SPR_00434	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00435	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00436	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00437	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	0	0	0	0	0
SPR_00438	tRNA links to Rfam database...	0.98	0.95	1.00	20	2755	0	0	0	0	1
SPR_00452	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00455	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00456	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00476	tRNA links to Rfam database...	0.98	0.95	1.00	20	2755	0	0	0	0	1
SPR_00479	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00482	tRNA links to Rfam database...	1.00	1.00	1.00	21	2680	0	0	0	0	0
SPR_00483	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00487	tRNA links to Rfam database...	0.88	0.86	0.90	19	2680	2	0	2	0	3
SPR_00493	tRNA links to Rfam database...	0.93	0.86	1.00	19	2756	0	0	0	0	3
SPR_00496	tRNA links to Rfam database...	0.98	0.95	1.00	20	2755	0	0	0	0	1
SPR_00497	tRNA links to Rfam database...	0.98	0.95	1.00	20	2755	0	0	0	0	1
SPR_00502	tRNA links to Rfam database...	0.98	0.95	1.00	20	2906	0	0	0	0	1
SPR_00504	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	0	0	0	0	0
SPR_00505	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00506	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00509	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00512	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00513	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00518	tRNA links to Rfam database...	0.97	0.95	1.00	19	2907	0	0	0	0	1
SPR_00548	tRNA links to Rfam database...	0.98	0.95	1.00	20	3383	0	0	0	0	1
SPR_00557	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00561	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00590	tRNA links to Rfam database...	1.00	1.00	1.00	20	2983	0	0	0	0	0
SPR_00593	tRNA links to Rfam database...	1.00	1.00	1.00	19	2756	2	0	0	2	0
SPR_00595	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	0	0	0	0	0
SPR_00598	tRNA links to Rfam database...	1.00	1.00	1.00	21	2982	0	0	0	0	0
SPR_00610	tRNA links to Rfam database...	0.90	0.81	1.00	17	2539	0	0	0	0	4
SPR_00620	tRNA links to Rfam database...	0.98	0.95	1.00	20	2983	0	0	0	0	1
SPR_00721	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00722	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	1	0	0	1	0
SPR_00758	tRNA links to Rfam database...	1.00	1.00	1.00	21	2982	0	0	0	0	0
SPR_00760	tRNA links to Rfam database...	1.00	1.00	1.00	21	3549	0	0	0	0	0
SPR_00777	tRNA links to Rfam database...	1.00	1.00	1.00	20	2608	1	0	0	1	0
SPR_00867	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00868	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00943	tRNA links to Rfam database...	1.00	1.00	1.00	20	2536	0	0	0	0	0
SPR_00957	tRNA links to Rfam database...	1.00	1.00	1.00	21	2982	0	0	0	0	0
SPR_01040	tRNA links to Rfam database...	0.98	0.95	1.00	20	2755	0	0	0	0	1
SPR_01088	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_01095	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_01106	tRNA links to Rfam database...	1.00	1.00	1.00	21	2535	0	0	0	0	0
SPR_01117	tRNA links to Rfam database...	0.98	0.95	1.00	20	2983	0	0	0	0	1
SPR_01157	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	0	0	0	0	0
SRP_00006	Metazoa_SRP links to Rfam database...	0.93	0.87	1.00	88	45665	3	0	0	3	13
SRP_00008	Bacteria_small_SRP links to Rfam database...	0.77	0.60	1.00	15	2911	0	0	0	0	10
SRP_00011	Plant_SRP links to Rfam database...	0.74	0.65	0.83	68	46278	17	0	14	3	36
SRP_00015	Plant_SRP links to Rfam database...	0.78	0.72	0.86	71	46277	20	0	12	8	28
SRP_00020	Bacteria_small_SRP links to Rfam database...	0.72	0.52	1.00	17	5548	0	0	0	0	16
SRP_00024	Bacteria_large_SRP links to Rfam database...	0.56	0.34	0.91	30	37642	3	0	3	0	57
SRP_00026	Bacteria_large_SRP links to Rfam database...	0.51	0.33	0.78	29	36819	9	4	4	1	59
SRP_00027	Bacteria_large_SRP links to Rfam database...	0.60	0.39	0.92	34	37091	3	0	3	0	53
SRP_00030	Bacteria_large_SRP links to Rfam database...	0.52	0.34	0.79	30	36818	8	4	4	0	58
SRP_00031	Bacteria_large_SRP links to Rfam database...	0.62	0.44	0.89	39	36271	6	0	5	1	50
SRP_00037	Bacteria_large_SRP links to Rfam database...	0.55	0.30	1.00	26	36559	0	0	0	0	61
SRP_00038	Bacteria_small_SRP links to Rfam database...	0.46	0.21	1.00	7	5043	0	0	0	0	26
SRP_00042	Bacteria_small_SRP links to Rfam database...	0.75	0.64	0.89	16	3987	3	1	1	1	9
SRP_00044	Bacteria_small_SRP links to Rfam database...	0.47	0.22	1.00	7	6098	0	0	0	0	25
SRP_00046	Bacteria_small_SRP links to Rfam database...	0.47	0.22	1.00	7	4746	0	0	0	0	25
SRP_00050	Metazoa_SRP links to Rfam database...	0.93	0.88	0.99	87	44762	4	0	1	3	12
SRP_00051	Bacteria_small_SRP links to Rfam database...	0.48	0.23	1.00	7	5453	0	0	0	0	23
SRP_00054	Bacteria_small_SRP links to Rfam database...	0.47	0.22	1.00	7	5558	0	0	0	0	25
SRP_00057	Bacteria_small_SRP links to Rfam database...	0.45	0.20	1.00	7	6321	0	0	0	0	28
SRP_00058	Bacteria_small_SRP links to Rfam database...	0.66	0.44	1.00	15	5763	0	0	0	0	19
SRP_00066	Metazoa_SRP links to Rfam database...	0.77	0.71	0.85	71	45367	17	2	11	4	29
SRP_00072	Bacteria_small_SRP links to Rfam database...	0.49	0.24	1.00	7	6321	0	0	0	0	22
SRP_00074	Bacteria_small_SRP links to Rfam database...	0.49	0.24	1.00	7	6548	0	0	0	0	22
SRP_00075	Bacteria_small_SRP links to Rfam database...	0.45	0.21	1.00	7	5558	0	0	0	0	27
SRP_00077	Bacteria_small_SRP links to Rfam database...	0.43	0.19	1.00	7	6663	0	0	0	0	30
SRP_00081	Bacteria_small_SRP links to Rfam database...	0.47	0.23	1.00	7	5558	0	0	0	0	24
SRP_00084	Bacteria_small_SRP links to Rfam database...	0.45	0.21	1.00	7	5453	0	0	0	0	27
SRP_00086	Metazoa_SRP links to Rfam database...	0.80	0.74	0.86	74	44167	14	5	7	2	26
SRP_00088	Bacteria_large_SRP links to Rfam database...	0.57	0.37	0.87	33	34153	5	0	5	0	56
SRP_00089	Bacteria_large_SRP links to Rfam database...	0.50	0.31	0.80	28	35743	7	3	4	0	62
SRP_00090	Bacteria_large_SRP links to Rfam database...	0.55	0.32	0.94	29	35480	2	0	2	0	61
SRP_00094	Bacteria_small_SRP links to Rfam database...	0.84	0.71	1.00	17	4078	0	0	0	0	7
SRP_00095	Bacteria_small_SRP links to Rfam database...	0.62	0.48	0.80	12	3990	3	2	1	0	13
SRP_00098	Bacteria_small_SRP links to Rfam database...	0.62	0.43	0.89	16	6423	2	1	1	0	21
SRP_00102	Metazoa_SRP links to Rfam database...	0.77	0.68	0.87	69	44472	13	1	9	3	32
SRP_00103	Metazoa_SRP links to Rfam database...	0.76	0.66	0.87	67	45374	12	1	9	2	35
SRP_00105	Bacteria_small_SRP links to Rfam database...	0.45	0.21	1.00	7	5558	0	0	0	0	27
SRP_00107	Bacteria_small_SRP links to Rfam database...	0.56	0.32	1.00	6	3649	0	0	0	0	13
SRP_00121	Bacteria_small_SRP links to Rfam database...	0.53	0.28	1.00	7	4271	0	0	0	0	18
SRP_00128	Bacteria_small_SRP links to Rfam database...	0.44	0.19	1.00	7	6779	0	0	0	0	29
SRP_00132	Bacteria_small_SRP links to Rfam database...	0.49	0.24	1.00	7	4844	0	0	0	0	22
SRP_00134	Bacteria_large_SRP links to Rfam database...	0.67	0.66	0.68	19	5967	13	0	9	4	10
SRP_00141	Bacteria_small_SRP links to Rfam database...	0.38	0.15	1.00	6	6322	1	0	0	1	35
SRP_00152	Plant_SRP links to Rfam database...	0.73	0.64	0.84	66	45674	16	5	8	3	37
SRP_00161	Bacteria_small_SRP links to Rfam database...	0.56	0.32	1.00	7	2843	0	0	0	0	15
SRP_00162	Bacteria_small_SRP links to Rfam database...	0.55	0.30	1.00	7	2919	0	0	0	0	16
SRP_00163	Bacteria_small_SRP links to Rfam database...	0.52	0.27	1.00	7	3479	0	0	0	0	19
SRP_00164	Bacteria_small_SRP links to Rfam database...	0.41	0.17	1.00	6	6897	0	0	0	0	29
SRP_00170	Bacteria_small_SRP links to Rfam database...	0.71	0.60	0.83	15	4077	5	1	2	2	10
SRP_00171	Metazoa_SRP links to Rfam database...	0.65	0.65	0.66	57	45364	38	6	24	8	31
SRP_00173	Bacteria_large_SRP links to Rfam database...	0.55	0.36	0.86	32	38189	6	0	5	1	58
SRP_00174	Bacteria_large_SRP links to Rfam database...	0.55	0.30	1.00	26	38755	0	0	0	0	60
SRP_00178	Plant_SRP links to Rfam database...	0.76	0.60	0.97	61	45690	3	0	2	1	41
SRP_00179	Plant_SRP links to Rfam database...	0.74	0.58	0.94	61	45991	7	0	4	3	44
SRP_00181	Plant_SRP links to Rfam database...	0.66	0.50	0.88	51	45998	9	0	7	2	51
SRP_00182	Plant_SRP links to Rfam database...	0.89	0.83	0.94	84	45967	7	0	5	2	17
SRP_00184	Plant_SRP links to Rfam database...	0.82	0.74	0.90	74	45974	11	0	8	3	26
SRP_00188	Plant_SRP links to Rfam database...	0.78	0.71	0.86	56	31060	10	0	9	1	23
SRP_00194	Bacteria_small_SRP links to Rfam database...	0.53	0.29	1.00	6	3234	0	0	0	0	15
SRP_00200	Bacteria_small_SRP links to Rfam database...	0.41	0.17	1.00	6	6897	0	0	0	0	30
SRP_00209	Bacteria_small_SRP links to Rfam database...	0.70	0.56	0.88	15	4639	3	1	1	1	12
SRP_00213	Bacteria_small_SRP links to Rfam database...	0.69	0.52	0.93	13	4172	1	0	1	0	12
SRP_00215	Bacteria_small_SRP links to Rfam database...	0.53	0.28	1.00	7	3233	0	0	0	0	18
SRP_00227	Bacteria_small_SRP links to Rfam database...	0.86	0.81	0.93	25	5124	5	1	1	3	6
SRP_00228	Metazoa_SRP links to Rfam database...	0.80	0.72	0.89	68	45375	16	0	8	8	27
SRP_00231	Bacteria_small_SRP links to Rfam database...	0.59	0.35	1.00	12	5448	0	0	0	0	22
SRP_00233	Bacteria_small_SRP links to Rfam database...	0.46	0.21	1.00	7	5144	0	0	0	0	26
SRP_00234	Bacteria_large_SRP links to Rfam database...	0.54	0.33	0.90	28	36284	4	0	3	1	58
SRP_00243	Bacteria_small_SRP links to Rfam database...	0.47	0.23	1.00	7	5144	0	0	0	0	24
SRP_00244	Bacteria_small_SRP links to Rfam database...	0.39	0.15	1.00	6	6897	1	0	0	1	33
SRP_00250	Bacteria_small_SRP links to Rfam database...	0.44	0.19	1.00	7	6779	0	0	0	0	29
SRP_00251	Bacteria_small_SRP links to Rfam database...	0.41	0.17	1.00	6	7015	1	0	0	1	30
SRP_00266	Bacteria_small_SRP links to Rfam database...	0.49	0.24	1.00	7	4649	0	0	0	0	22
SRP_00268	Bacteria_small_SRP links to Rfam database...	0.73	0.63	0.85	17	4166	3	1	2	0	10
SRP_00269	Bacteria_small_SRP links to Rfam database...	0.46	0.21	1.00	7	5043	0	0	0	0	26
SRP_00270	Bacteria_small_SRP links to Rfam database...	0.44	0.19	1.00	6	4650	1	0	0	1	25
SRP_00271	Bacteria_small_SRP links to Rfam database...	0.54	0.29	1.00	7	3233	0	0	0	0	17
SRP_00273	Bacteria_small_SRP links to Rfam database...	0.84	0.70	1.00	28	6758	0	0	0	0	12
SRP_00274	Bacteria_small_SRP links to Rfam database...	0.54	0.29	1.00	11	6892	0	0	0	0	27
SRP_00295	Bacteria_small_SRP links to Rfam database...	0.51	0.26	1.00	10	6893	1	0	0	1	28
SRP_00303	Bacteria_small_SRP links to Rfam database...	0.43	0.19	1.00	6	6664	1	0	0	1	26
SRP_00308	Bacteria_large_SRP links to Rfam database...	0.48	0.32	0.74	28	36277	10	4	6	0	60
SRP_00310	Bacteria_small_SRP links to Rfam database...	0.55	0.30	1.00	7	2919	0	0	0	0	16
SRP_00312	Bacteria_small_SRP links to Rfam database...	0.77	0.67	0.90	18	4166	3	1	1	1	9
SRP_00315	Bacteria_small_SRP links to Rfam database...	0.74	0.65	0.83	15	2908	3	0	3	0	8
SRP_00317	Metazoa_SRP links to Rfam database...	0.91	0.85	0.98	83	45065	7	0	2	5	15
SRP_00318	Bacteria_small_SRP links to Rfam database...	0.55	0.30	1.00	7	2996	0	0	0	0	16
SRP_00325	Bacteria_small_SRP links to Rfam database...	0.46	0.21	1.00	7	4364	0	0	0	0	26
SRP_00326	Bacteria_small_SRP links to Rfam database...	0.44	0.19	1.00	6	5044	1	0	0	1	25
SRP_00333	Bacteria_small_SRP links to Rfam database...	0.45	0.21	1.00	7	5144	0	0	0	0	27
SRP_00335	Bacteria_large_SRP links to Rfam database...	0.53	0.28	1.00	11	35234	0	0	0	0	28
SRP_00337	Bacteria_large_SRP links to Rfam database...	0.70	0.53	0.94	48	35460	4	0	3	1	43
SRP_00338	Bacteria_small_SRP links to Rfam database...	0.44	0.19	1.00	7	5453	0	0	0	0	29
SRP_00341	Bacteria_small_SRP links to Rfam database...	0.47	0.23	1.00	7	4746	0	0	0	0	24
SRP_00342	Bacteria_small_SRP links to Rfam database...	0.49	0.24	1.00	6	3999	0	0	0	0	19
SRP_00347	Metazoa_SRP links to Rfam database...	0.79	0.71	0.87	68	46587	18	1	9	8	28
SRP_00350	Bacteria_small_SRP links to Rfam database...	0.73	0.63	0.85	17	3896	3	1	2	0	10
SRP_00356	Bacteria_small_SRP links to Rfam database...	0.48	0.23	1.00	7	5043	0	0	0	0	23
SRP_00357	Bacteria_small_SRP links to Rfam database...	0.44	0.19	1.00	7	5349	0	0	0	0	29
SRP_00358	Bacteria_small_SRP links to Rfam database...	0.41	0.17	1.00	6	6322	0	0	0	0	29
SRP_00367	Bacteria_small_SRP links to Rfam database...	0.41	0.17	1.00	6	6780	0	0	0	0	29
SRP_00368	Metazoa_SRP links to Rfam database...	0.80	0.73	0.88	72	43874	14	1	9	4	26
SRP_00369	Bacteria_small_SRP links to Rfam database...	0.41	0.17	1.00	6	5772	0	0	0	0	29
SRP_00383	Bacteria_small_SRP links to Rfam database...	0.54	0.29	1.00	7	3233	0	0	0	0	17
TMR_00017	tmRNA links to Rfam database...	0.68	0.54	0.85	55	67096	14	0	10	4	47
TMR_00018	tmRNA links to Rfam database...	0.62	0.53	0.72	49	64552	23	7	12	4	43
TMR_00038	tmRNA links to Rfam database...	0.65	0.53	0.81	58	71181	14	4	10	0	52
TMR_00042	tmRNA links to Rfam database...	0.68	0.53	0.87	52	62775	9	1	7	1	46
TMR_00046	tmRNA links to Rfam database...	0.56	0.49	0.64	47	62761	28	4	23	1	49
TMR_00048	tmRNA links to Rfam database...	0.64	0.52	0.80	49	64919	13	5	7	1	46
TMR_00080	tmRNA links to Rfam database...	0.57	0.50	0.64	48	70425	33	8	19	6	48
TMR_00082	tmRNA links to Rfam database...	0.59	0.50	0.69	48	67826	28	11	11	6	48
TMR_00123	tmRNA links to Rfam database...	0.70	0.55	0.89	56	66367	12	1	6	5	45
TMR_00137	tmRNA links to Rfam database...	0.56	0.48	0.66	43	61010	24	11	11	2	46
TMR_00142	tmRNA links to Rfam database...	0.63	0.52	0.77	53	70807	22	4	12	6	49
TMR_00207	tmRNA links to Rfam database...	0.66	0.54	0.81	56	72321	19	7	6	6	47
TMR_00257	tmRNA links to Rfam database...	0.75	0.63	0.89	62	67091	15	4	4	7	36
TMR_00271	tmRNA links to Rfam database...	0.48	0.37	0.63	34	64207	26	5	15	6	57
TMR_00332	tmRNA links to Rfam database...	0.64	0.52	0.78	51	67096	19	1	13	5	48
TMR_00366	tmRNA links to Rfam database...	0.55	0.48	0.62	48	67819	29	8	21	0	52
TMR_00378	tmRNA links to Rfam database...	0.49	0.41	0.59	40	67828	29	8	20	1	57
TMR_00399	tmRNA links to Rfam database...	0.63	0.56	0.70	53	64904	27	6	17	4	41
TMR_00404	tmRNA links to Rfam database...	0.56	0.47	0.68	43	67465	20	3	17	0	49
TMR_00427	tmRNA links to Rfam database...	0.50	0.36	0.69	35	67477	16	7	9	0	62
TMR_00443	tmRNA links to Rfam database...	0.73	0.63	0.86	65	67085	15	6	5	4	39
TMR_00451	tmRNA links to Rfam database...	0.57	0.51	0.65	45	63477	30	10	14	6	44
TMR_00458	tmRNA links to Rfam database...	0.54	0.46	0.64	43	63479	28	8	16	4	50
TMR_00469	tmRNA links to Rfam database...	0.70	0.60	0.81	60	64546	14	7	7	0	40
TMR_00472	tmRNA links to Rfam database...	0.65	0.56	0.75	54	64548	19	8	10	1	43
TMR_00519	tmRNA links to Rfam database...	0.57	0.48	0.67	46	63121	25	7	16	2	49
TMR_00520	tmRNA links to Rfam database...	0.53	0.43	0.65	43	63124	27	8	15	4	56
TMR_00522	tmRNA links to Rfam database...	0.52	0.42	0.64	41	63126	27	6	17	4	56
TMR_00528	tmRNA links to Rfam database...	0.54	0.47	0.62	46	63116	34	9	19	6	51
TMR_00540	tmRNA links to Rfam database...	0.66	0.54	0.81	56	73467	17	5	8	4	48
TMR_00568	tmRNA links to Rfam database...	0.73	0.67	0.80	66	60644	22	3	13	6	33
TMR_00571	tmRNA links to Rfam database...	0.75	0.69	0.83	68	60644	20	3	11	6	31
TMR_00580	tmRNA links to Rfam database...	0.74	0.65	0.83	65	60648	19	1	12	6	35
TMR_00584	tmRNA links to Rfam database...	0.75	0.68	0.83	66	60995	17	2	12	3	31
TMR_00586	tmRNA links to Rfam database...	0.69	0.64	0.76	62	60993	26	8	12	6	35
TMR_00616	tmRNA links to Rfam database...	0.64	0.55	0.76	54	67090	17	7	10	0	45
TMR_00699	tmRNA links to Rfam database...	0.68	0.54	0.85	55	67096	15	1	9	5	47
TMR_00702	tmRNA links to Rfam database...	0.54	0.43	0.68	43	67098	24	2	18	4	57
TMR_00703	tmRNA links to Rfam database...	0.67	0.54	0.83	53	67464	15	1	10	4	46

^top

Performance of Contrafold - scored lower in this pairwise comparison

1. Total counts & total scores for Contrafold

Total Base Pair Counts
Total TP	37666
Total TN	119775853
Total FP	33163
Total FP CONTRA	4192
Total FP INCONS	23972
Total FP COMP	4999
Total FN	32568

Total Scores
MCC	0.554
Average MCC ± 95% Confidence Intervals	0.657 ± 0.018
Sensitivity	0.536
Positive Predictive Value	0.572
Nr of predictions	642

^top

2. Individual counts for Contrafold [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00004	RNaseP_bact_a links to Rfam database...	0.70	0.68	0.72	66	47803	28	5	21	2	31
ASE_00005	RNaseP_bact_a links to Rfam database...	0.62	0.56	0.69	65	57876	30	0	29	1	52
ASE_00006	RNaseP_bact_a links to Rfam database...	0.52	0.52	0.53	48	47495	47	7	36	4	45
ASE_00007	RNaseP_bact_a links to Rfam database...	0.53	0.49	0.57	54	59591	45	1	39	5	56
ASE_00012	RNaseP_bact_a links to Rfam database...	0.54	0.50	0.58	61	73815	53	2	42	9	62
ASE_00018	RNaseP_bact_a links to Rfam database...	0.62	0.59	0.66	79	80481	42	2	39	1	55
ASE_00020	RNaseP_bact_a links to Rfam database...	0.68	0.62	0.74	78	73815	31	1	26	4	48
ASE_00021	RNaseP_bact_a links to Rfam database...	0.65	0.61	0.69	97	104056	50	3	40	7	63
ASE_00022	RNaseP_bact_b links to Rfam database...	0.33	0.31	0.35	39	82918	77	2	69	6	85
ASE_00028	RNaseP_bact_b links to Rfam database...	0.69	0.66	0.72	83	84551	44	4	28	12	43
ASE_00035	RNaseP_bact_a links to Rfam database...	0.40	0.36	0.43	43	70401	62	4	52	6	75
ASE_00037	RNaseP_bact_a links to Rfam database...	0.60	0.53	0.69	58	59256	28	1	25	2	52
ASE_00038	RNaseP_bact_a links to Rfam database...	0.54	0.50	0.58	51	53540	41	6	31	4	50
ASE_00040	RNaseP_bact_a links to Rfam database...	0.14	0.14	0.15	19	78875	114	8	101	5	114
ASE_00041	RNaseP_bact_a links to Rfam database...	0.67	0.61	0.73	66	57539	29	2	23	4	42
ASE_00042	RNaseP_bact_a links to Rfam database...	0.57	0.54	0.60	79	89969	57	2	50	5	66
ASE_00044	RNaseP_bact_a links to Rfam database...	0.68	0.67	0.69	70	54513	37	5	27	5	35
ASE_00045	RNaseP_bact_b links to Rfam database...	0.57	0.54	0.61	43	47208	35	8	19	8	37
ASE_00064	RNaseP_bact_a links to Rfam database...	0.60	0.56	0.65	50	45374	37	2	25	10	39
ASE_00068	RNaseP_bact_a links to Rfam database...	0.69	0.61	0.79	52	37609	14	1	13	0	33
ASE_00074	RNaseP_bact_a links to Rfam database...	0.49	0.49	0.50	58	67781	59	7	50	2	61
ASE_00075	RNaseP_bact_a links to Rfam database...	0.74	0.69	0.80	111	108673	34	3	24	7	51
ASE_00077	RNaseP_bact_a links to Rfam database...	0.73	0.67	0.78	58	45076	22	3	13	6	28
ASE_00078	RNaseP_bact_a links to Rfam database...	0.73	0.66	0.81	55	43003	20	0	13	7	28
ASE_00080	RNaseP_bact_a links to Rfam database...	0.59	0.57	0.61	70	71517	49	6	38	5	53
ASE_00081	RNaseP_bact_a links to Rfam database...	0.61	0.58	0.64	56	49682	34	5	27	2	41
ASE_00082	RNaseP_bact_a links to Rfam database...	0.79	0.72	0.87	83	70405	24	1	11	12	33
ASE_00083	RNaseP_bact_a links to Rfam database...	0.76	0.71	0.81	78	62385	25	0	18	7	32
ASE_00084	RNaseP_bact_a links to Rfam database...	0.74	0.73	0.76	72	53533	30	2	21	7	27
ASE_00087	RNaseP_bact_a links to Rfam database...	0.74	0.72	0.76	103	88275	33	4	28	1	41
ASE_00090	RNaseP_bact_a links to Rfam database...	0.67	0.67	0.66	68	55508	43	4	31	8	33
ASE_00092	RNaseP_bact_a links to Rfam database...	0.82	0.80	0.85	90	63440	23	6	10	7	23
ASE_00099	RNaseP_bact_a links to Rfam database...	0.53	0.51	0.55	61	64510	51	5	44	2	59
ASE_00104	RNaseP_bact_a links to Rfam database...	0.71	0.69	0.73	82	64148	33	4	27	2	37
ASE_00105	RNaseP_bact_a links to Rfam database...	0.53	0.50	0.57	55	64165	49	7	34	8	56
ASE_00107	RNaseP_bact_a links to Rfam database...	0.69	0.68	0.70	86	73030	38	4	33	1	41
ASE_00114	RNaseP_bact_b links to Rfam database...	0.52	0.47	0.57	36	45388	40	0	27	13	41
ASE_00115	RNaseP_bact_a links to Rfam database...	0.69	0.69	0.69	70	54513	40	6	26	8	31
ASE_00118	RNaseP_bact_a links to Rfam database...	0.64	0.62	0.66	63	60631	35	4	28	3	39
ASE_00119	RNaseP_bact_a links to Rfam database...	0.73	0.72	0.74	78	62729	31	3	25	3	30
ASE_00123	RNaseP_bact_a links to Rfam database...	0.57	0.54	0.61	46	38427	34	4	26	4	39
ASE_00125	RNaseP_bact_a links to Rfam database...	0.76	0.70	0.82	62	39264	22	3	11	8	26
ASE_00126	RNaseP_bact_a links to Rfam database...	0.61	0.59	0.64	48	40395	34	2	25	7	34
ASE_00128	RNaseP_bact_a links to Rfam database...	0.79	0.72	0.88	72	53219	16	1	9	6	28
ASE_00129	RNaseP_bact_a links to Rfam database...	0.70	0.66	0.74	73	62737	30	1	24	5	38
ASE_00131	RNaseP_bact_a links to Rfam database...	0.71	0.65	0.79	55	39270	25	1	14	10	30
ASE_00134	RNaseP_bact_a links to Rfam database...	0.43	0.41	0.46	39	50318	50	3	43	4	56
ASE_00135	RNaseP_bact_a links to Rfam database...	0.63	0.57	0.69	62	63100	35	1	27	7	47
ASE_00136	RNaseP_bact_a links to Rfam database...	0.60	0.54	0.66	50	48129	37	1	25	11	42
ASE_00137	RNaseP_bact_a links to Rfam database...	0.79	0.76	0.82	74	48426	20	4	12	4	24
ASE_00138	RNaseP_bact_a links to Rfam database...	0.59	0.56	0.63	45	40399	27	7	19	1	36
ASE_00140	RNaseP_bact_a links to Rfam database...	0.76	0.70	0.83	88	70770	19	3	15	1	37
ASE_00142	RNaseP_bact_a links to Rfam database...	0.60	0.59	0.62	72	67045	50	5	39	6	50
ASE_00146	RNaseP_bact_a links to Rfam database...	0.50	0.48	0.53	60	70762	55	7	47	1	64
ASE_00153	RNaseP_nuc links to Rfam database...	0.41	0.42	0.40	31	57553	80	7	39	34	42
ASE_00161	RNaseP_bact_b links to Rfam database...	0.44	0.44	0.45	38	53544	50	9	37	4	49
ASE_00163	RNaseP_bact_a links to Rfam database...	0.34	0.32	0.37	30	53219	62	4	48	10	63
ASE_00165	RNaseP_bact_a links to Rfam database...	0.71	0.66	0.77	67	52888	21	4	16	1	34
ASE_00170	RNaseP_bact_a links to Rfam database...	0.65	0.61	0.70	57	48746	26	4	21	1	36
ASE_00171	RNaseP_bact_a links to Rfam database...	0.74	0.71	0.77	67	48429	24	5	15	4	27
ASE_00172	RNaseP_bact_a links to Rfam database...	0.83	0.77	0.88	82	58903	15	2	9	4	24
ASE_00174	RNaseP_bact_a links to Rfam database...	0.62	0.58	0.66	63	60979	34	7	26	1	46
ASE_00175	RNaseP_bact_a links to Rfam database...	0.35	0.34	0.36	36	59932	73	3	60	10	71
ASE_00179	RNaseP_bact_a links to Rfam database...	0.75	0.69	0.81	58	44181	21	3	11	7	26
ASE_00180	RNaseP_bact_a links to Rfam database...	0.77	0.71	0.85	71	51276	18	4	9	5	29
ASE_00181	RNaseP_bact_a links to Rfam database...	0.44	0.42	0.46	45	57532	55	5	48	2	61
ASE_00182	RNaseP_bact_a links to Rfam database...	0.66	0.63	0.70	86	84132	38	2	35	1	50
ASE_00183	RNaseP_bact_a links to Rfam database...	0.71	0.70	0.72	79	61315	40	2	29	9	34
ASE_00184	RNaseP_bact_a links to Rfam database...	0.76	0.77	0.75	79	54509	30	5	22	3	23
ASE_00185	RNaseP_bact_a links to Rfam database...	0.74	0.69	0.80	88	73426	28	2	20	6	40
ASE_00186	RNaseP_bact_a links to Rfam database...	0.75	0.72	0.79	95	78882	35	3	23	9	37
ASE_00190	RNaseP_bact_b links to Rfam database...	0.53	0.46	0.61	41	45384	33	3	23	7	49
ASE_00197	RNaseP_bact_a links to Rfam database...	0.62	0.59	0.66	85	89125	49	3	40	6	60
ASE_00198	RNaseP_bact_a links to Rfam database...	0.71	0.69	0.73	70	52554	30	4	22	4	32
ASE_00203	RNaseP_bact_a links to Rfam database...	0.78	0.74	0.82	71	46578	22	4	12	6	25
ASE_00212	RNaseP_bact_a links to Rfam database...	0.68	0.64	0.71	95	93828	46	3	35	8	53
ASE_00214	RNaseP_bact_a links to Rfam database...	0.80	0.78	0.82	80	56183	27	3	14	10	23
ASE_00215	RNaseP_bact_a links to Rfam database...	0.54	0.51	0.57	50	48429	39	4	33	2	49
ASE_00216	RNaseP_bact_a links to Rfam database...	0.58	0.59	0.58	48	39257	36	9	26	1	34
ASE_00217	RNaseP_bact_a links to Rfam database...	0.42	0.39	0.46	35	40394	47	2	39	6	55
ASE_00221	RNaseP_bact_a links to Rfam database...	0.66	0.60	0.72	70	64523	31	1	26	4	47
ASE_00228	RNaseP_bact_a links to Rfam database...	0.79	0.78	0.80	67	46887	20	8	9	3	19
ASE_00229	RNaseP_bact_a links to Rfam database...	0.67	0.64	0.71	56	42407	28	4	19	5	31
ASE_00231	RNaseP_bact_a links to Rfam database...	0.77	0.75	0.79	72	47804	20	3	16	1	24
ASE_00232	RNaseP_bact_a links to Rfam database...	0.64	0.64	0.64	54	38418	33	10	21	2	30
ASE_00234	RNaseP_bact_a links to Rfam database...	0.55	0.50	0.60	64	75360	47	3	39	5	65
ASE_00238	RNaseP_bact_a links to Rfam database...	0.68	0.62	0.75	71	64166	26	1	23	2	43
ASE_00241	RNaseP_bact_a links to Rfam database...	0.79	0.74	0.85	64	43881	17	2	9	6	23
ASE_00242	RNaseP_bact_a links to Rfam database...	0.76	0.72	0.79	81	60973	24	6	15	3	31
ASE_00248	RNaseP_bact_a links to Rfam database...	0.62	0.58	0.67	66	62383	36	1	31	4	48
ASE_00254	RNaseP_bact_a links to Rfam database...	0.77	0.73	0.81	60	36782	20	5	9	6	22
ASE_00255	RNaseP_bact_a links to Rfam database...	0.64	0.62	0.67	80	74571	46	4	36	6	50
ASE_00257	RNaseP_bact_a links to Rfam database...	0.77	0.74	0.81	72	50951	21	2	15	4	25
ASE_00263	RNaseP_bact_a links to Rfam database...	0.56	0.56	0.57	67	70383	50	4	46	0	53
ASE_00267	RNaseP_bact_a links to Rfam database...	0.49	0.47	0.52	41	45071	44	3	35	6	47
ASE_00270	RNaseP_bact_a links to Rfam database...	0.72	0.70	0.75	89	72271	33	3	27	3	39
ASE_00274	RNaseP_bact_a links to Rfam database...	0.48	0.47	0.51	48	55516	49	6	41	2	55
ASE_00277	RNaseP_bact_a links to Rfam database...	0.61	0.59	0.63	54	48119	35	5	27	3	37
ASE_00279	RNaseP_bact_a links to Rfam database...	0.52	0.51	0.53	52	53202	48	8	39	1	49
ASE_00280	RNaseP_bact_a links to Rfam database...	0.61	0.58	0.64	57	51914	35	4	28	3	41
ASE_00281	RNaseP_bact_a links to Rfam database...	0.70	0.65	0.75	57	44475	26	1	18	7	31
ASE_00282	RNaseP_bact_a links to Rfam database...	0.49	0.47	0.51	60	77698	59	9	48	2	67
ASE_00283	RNaseP_bact_a links to Rfam database...	0.64	0.63	0.66	67	61674	41	4	31	6	40
ASE_00284	RNaseP_bact_a links to Rfam database...	0.65	0.63	0.67	68	58209	40	6	28	6	40
ASE_00285	RNaseP_bact_a links to Rfam database...	0.83	0.79	0.87	96	68896	23	3	11	9	26
ASE_00286	RNaseP_bact_a links to Rfam database...	0.73	0.70	0.77	64	46582	24	1	18	5	28
ASE_00287	RNaseP_bact_a links to Rfam database...	0.68	0.65	0.72	67	54853	32	3	23	6	36
ASE_00292	RNaseP_bact_a links to Rfam database...	0.59	0.53	0.66	73	81699	43	2	36	5	65
ASE_00294	RNaseP_bact_a links to Rfam database...	0.73	0.68	0.78	116	114333	36	3	29	4	55
ASE_00296	RNaseP_bact_a links to Rfam database...	0.55	0.54	0.57	78	91670	61	5	53	3	67
ASE_00297	RNaseP_bact_a links to Rfam database...	0.68	0.67	0.68	66	52878	37	5	26	6	32
ASE_00298	RNaseP_bact_a links to Rfam database...	0.28	0.27	0.29	31	67422	79	7	68	4	82
ASE_00305	RNaseP_bact_b links to Rfam database...	0.70	0.61	0.80	52	54550	20	0	13	7	33
ASE_00318	RNaseP_bact_b links to Rfam database...	0.63	0.60	0.66	71	80093	40	12	24	4	47
ASE_00321	RNaseP_bact_b links to Rfam database...	0.73	0.65	0.81	57	54545	20	0	13	7	31
ASE_00328	RNaseP_bact_b links to Rfam database...	0.63	0.59	0.67	66	72673	41	5	27	9	46
ASE_00332	RNaseP_bact_a links to Rfam database...	0.56	0.55	0.58	76	81678	60	2	54	4	62
ASE_00335	RNaseP_bact_b links to Rfam database...	0.62	0.57	0.68	66	75369	44	2	29	13	50
ASE_00340	RNaseP_bact_a links to Rfam database...	0.47	0.45	0.49	38	45978	44	4	36	4	47
ASE_00342	RNaseP_bact_a links to Rfam database...	0.67	0.64	0.70	74	62376	33	4	27	2	41
ASE_00353	RNaseP_bact_a links to Rfam database...	0.77	0.75	0.78	80	57868	29	1	21	7	27
ASE_00361	RNaseP_bact_a links to Rfam database...	0.64	0.61	0.67	77	75351	42	8	30	4	50
ASE_00362	RNaseP_bact_a links to Rfam database...	0.60	0.59	0.60	54	48115	38	2	34	2	37
ASE_00363	RNaseP_bact_a links to Rfam database...	0.78	0.77	0.80	72	51270	25	1	17	7	22
ASE_00364	RNaseP_bact_a links to Rfam database...	0.74	0.71	0.77	75	54187	33	3	20	10	30
ASE_00366	RNaseP_bact_a links to Rfam database...	0.37	0.38	0.36	37	58550	68	7	59	2	61
ASE_00367	RNaseP_bact_a links to Rfam database...	0.50	0.50	0.50	43	42985	49	8	35	6	43
ASE_00369	RNaseP_bact_a links to Rfam database...	0.75	0.72	0.78	77	55846	28	1	21	6	30
ASE_00370	RNaseP_bact_a links to Rfam database...	0.63	0.63	0.62	53	41820	35	4	28	3	31
ASE_00372	RNaseP_bact_a links to Rfam database...	0.70	0.68	0.72	68	51908	33	4	23	6	32
ASE_00374	RNaseP_bact_a links to Rfam database...	0.74	0.73	0.74	64	44764	23	5	17	1	24
ASE_00376	RNaseP_bact_a links to Rfam database...	0.61	0.60	0.63	63	56853	41	4	33	4	42
ASE_00377	RNaseP_bact_a links to Rfam database...	0.77	0.76	0.78	81	57526	29	4	19	6	26
ASE_00379	RNaseP_bact_a links to Rfam database...	0.60	0.58	0.63	52	45973	39	4	27	8	37
ASE_00382	RNaseP_bact_a links to Rfam database...	0.58	0.56	0.59	47	41826	36	6	26	4	37
ASE_00383	RNaseP_bact_a links to Rfam database...	0.74	0.72	0.75	76	54514	32	3	22	7	29
ASE_00384	RNaseP_bact_a links to Rfam database...	0.78	0.76	0.80	70	48428	22	2	16	4	22
ASE_00386	RNaseP_bact_a links to Rfam database...	0.67	0.66	0.68	63	50310	36	1	29	6	33
ASE_00387	RNaseP_bact_a links to Rfam database...	0.69	0.65	0.73	68	55852	27	1	24	2	36
ASE_00388	RNaseP_bact_a links to Rfam database...	0.72	0.67	0.78	60	45676	22	1	16	5	29
ASE_00390	RNaseP_bact_a links to Rfam database...	0.65	0.64	0.67	54	42114	37	3	24	10	31
ASE_00393	RNaseP_bact_a links to Rfam database...	0.72	0.68	0.77	63	47813	26	2	17	7	30
ASE_00394	RNaseP_bact_a links to Rfam database...	0.80	0.80	0.81	74	46880	20	4	13	3	19
ASE_00395	RNaseP_bact_a links to Rfam database...	0.68	0.68	0.69	57	41533	29	5	21	3	27
ASE_00396	RNaseP_bact_a links to Rfam database...	0.56	0.54	0.58	45	41538	34	2	31	1	38
ASE_00397	RNaseP_bact_a links to Rfam database...	0.64	0.64	0.65	67	54512	41	6	30	5	38
ASE_00398	RNaseP_bact_a links to Rfam database...	0.68	0.63	0.74	65	55857	30	1	22	7	39
ASE_00400	RNaseP_bact_a links to Rfam database...	0.66	0.63	0.70	67	57874	31	1	28	2	39
ASE_00401	RNaseP_bact_a links to Rfam database...	0.63	0.63	0.64	79	76904	46	7	38	1	47
ASE_00402	RNaseP_bact_a links to Rfam database...	0.78	0.74	0.83	63	42410	18	1	12	5	22
ASE_00403	RNaseP_bact_a links to Rfam database...	0.39	0.36	0.41	39	55850	61	3	53	5	68
ASE_00404	RNaseP_bact_a links to Rfam database...	0.54	0.53	0.55	45	42989	38	2	35	1	40
ASE_00406	RNaseP_bact_a links to Rfam database...	0.72	0.71	0.74	67	48737	29	6	18	5	27
ASE_00411	RNaseP_bact_a links to Rfam database...	0.56	0.53	0.59	47	49376	34	7	25	2	42
ASE_00412	RNaseP_bact_a links to Rfam database...	0.63	0.59	0.67	62	58218	40	4	27	9	43
ASE_00413	RNaseP_bact_a links to Rfam database...	0.49	0.48	0.50	39	44473	43	10	29	4	42
ASE_00415	RNaseP_bact_a links to Rfam database...	0.54	0.52	0.56	54	54849	50	3	40	7	49
ASE_00416	RNaseP_bact_a links to Rfam database...	0.61	0.58	0.63	74	77304	51	5	38	8	53
ASE_00419	RNaseP_bact_a links to Rfam database...	0.77	0.77	0.78	79	54845	24	9	13	2	24
ASE_00422	RNaseP_bact_a links to Rfam database...	0.68	0.67	0.68	63	46879	34	5	24	5	31
ASE_00423	RNaseP_bact_a links to Rfam database...	0.67	0.66	0.68	72	56847	36	7	27	2	37
ASE_00427	RNaseP_nuc links to Rfam database...	0.14	0.17	0.11	8	40684	76	26	37	13	38
ASE_00428	RNaseP_bact_a links to Rfam database...	0.67	0.62	0.73	78	76529	38	2	27	9	47
ASE_00430	RNaseP_bact_a links to Rfam database...	0.69	0.68	0.70	66	46877	35	5	23	7	31
ASE_00437	RNaseP_bact_a links to Rfam database...	0.46	0.41	0.52	55	79296	53	1	49	3	80
ASE_00441	RNaseP_bact_a links to Rfam database...	0.82	0.76	0.89	85	64166	20	2	8	10	27
ASE_00448	RNaseP_bact_a links to Rfam database...	0.40	0.38	0.42	42	64162	65	8	49	8	70
ASE_00451	RNaseP_bact_a links to Rfam database...	0.74	0.69	0.79	86	70767	24	2	21	1	39
CRW_00024	SSU_rRNA_archaea links to Rfam database...	0.77	0.77	0.78	351	1085153	140	12	85	43	107
CRW_00034	SSU_rRNA_bacteria links to Rfam database...	0.68	0.68	0.68	320	1141844	188	22	130	36	154
CRW_00048	SSU_rRNA_bacteria links to Rfam database...	0.60	0.57	0.64	268	1170795	174	25	127	22	202
CRW_00054	SSU_rRNA_bacteria links to Rfam database...	0.54	0.52	0.56	237	1107395	202	25	159	18	219
CRW_00059	SSU_rRNA_bacteria links to Rfam database...	0.64	0.60	0.67	286	1172318	164	20	122	22	187
CRW_00061	SSU_rRNA_bacteria links to Rfam database...	0.59	0.58	0.61	274	1181504	188	29	146	13	202
CRW_00068	SSU_rRNA_bacteria links to Rfam database...	0.51	0.51	0.53	231	1108865	226	32	177	17	226
CRW_00096	SSU_rRNA_bacteria links to Rfam database...	0.55	0.53	0.57	245	1178450	213	19	166	28	220
CRW_00140	SSU_rRNA_bacteria links to Rfam database...	0.56	0.52	0.61	243	1135878	175	14	143	18	220
CRW_00141	SSU_rRNA_bacteria links to Rfam database...	0.62	0.60	0.64	287	1201577	192	19	142	31	189
CRW_00150	SSU_rRNA_bacteria links to Rfam database...	0.55	0.51	0.59	237	1152519	185	22	143	20	229
CRW_00152	SSU_rRNA_bacteria links to Rfam database...	0.53	0.49	0.57	233	1180006	196	22	155	19	238
CRW_00166	SSU_rRNA_bacteria links to Rfam database...	0.62	0.59	0.64	277	1190763	182	19	137	26	191
CRW_00173	SSU_rRNA_bacteria links to Rfam database...	0.34	0.34	0.35	150	1082228	288	32	246	10	295
CRW_00177	SSU_rRNA_bacteria links to Rfam database...	0.50	0.48	0.52	228	1178444	227	20	188	19	245
CRW_00196	SSU_rRNA_bacteria links to Rfam database...	0.57	0.55	0.59	259	1207798	197	27	151	19	216
CRW_00230	SSU_rRNA_bacteria links to Rfam database...	0.54	0.52	0.56	250	1198476	220	27	173	20	228
CRW_00245	SSU_rRNA_bacteria links to Rfam database...	0.53	0.51	0.55	229	1105912	212	23	164	25	224
CRW_00248	SSU_rRNA_bacteria links to Rfam database...	0.64	0.62	0.66	301	1218683	200	21	136	43	183
CRW_00250	SSU_rRNA_bacteria links to Rfam database...	0.58	0.56	0.61	267	1198490	184	24	145	15	211
CRW_00256	SSU_rRNA_bacteria links to Rfam database...	0.47	0.44	0.50	206	1192327	232	26	181	25	262
CRW_00270	SSU_rRNA_bacteria links to Rfam database...	0.66	0.63	0.69	286	1111874	157	20	106	31	169
CRW_00271	SSU_rRNA_bacteria links to Rfam database...	0.51	0.48	0.53	221	1122337	215	30	163	22	241
CRW_00273	SSU_rRNA_bacteria links to Rfam database...	0.47	0.46	0.49	203	1085190	233	20	188	25	243
CRW_00275	SSU_rRNA_bacteria links to Rfam database...	0.61	0.59	0.63	271	1114843	186	19	138	29	186
CRW_00277	SSU_rRNA_bacteria links to Rfam database...	0.44	0.40	0.49	182	1110423	203	23	167	13	271
CRW_00278	SSU_rRNA_bacteria links to Rfam database...	0.44	0.42	0.47	190	1129849	240	28	189	23	260
CRW_00279	SSU_rRNA_bacteria links to Rfam database...	0.60	0.56	0.64	262	1180004	173	25	125	23	202
CRW_00280	SSU_rRNA_bacteria links to Rfam database...	0.55	0.51	0.60	232	1117873	173	15	140	18	221
CRW_00281	SSU_rRNA_bacteria links to Rfam database...	0.64	0.62	0.65	288	1144901	182	17	135	30	176
CRW_00284	SSU_rRNA_bacteria links to Rfam database...	0.51	0.47	0.56	216	1131371	196	24	149	23	240
CRW_00285	SSU_rRNA_bacteria links to Rfam database...	0.66	0.63	0.68	289	1117836	159	19	116	24	169
CRW_00289	SSU_rRNA_bacteria links to Rfam database...	0.60	0.57	0.63	270	1189221	197	21	141	35	206
CRW_00298	SSU_rRNA_eukarya links to Rfam database...	0.25	0.25	0.25	122	1620403	431	72	303	56	372
CRW_00301	SSU_rRNA_eukarya links to Rfam database...	0.43	0.40	0.45	210	1762038	324	41	214	69	309
CRW_00306	SSU_rRNA_eukarya links to Rfam database...	0.28	0.28	0.29	129	1445402	388	63	256	69	333
CRW_00310	SSU_rRNA_eukarya links to Rfam database...	0.36	0.35	0.37	184	1805456	377	53	257	67	337
CRW_00326	SSU_rRNA_eukarya links to Rfam database...	0.50	0.49	0.51	246	1627630	284	52	182	50	256
CRW_00330	SSU_rRNA_eukarya links to Rfam database...	0.33	0.32	0.33	166	1988512	422	56	281	85	351
CRW_00332	SSU_rRNA_eukarya links to Rfam database...	0.26	0.26	0.26	122	1769544	429	70	285	74	355
CRW_00333	SSU_rRNA_eukarya links to Rfam database...	0.38	0.36	0.41	183	1892040	342	42	220	80	331
CRW_00345	SSU_rRNA_eukarya links to Rfam database...	0.39	0.40	0.39	197	1586366	355	58	250	47	301
CRW_00346	SSU_rRNA_eukarya links to Rfam database...	0.40	0.40	0.39	202	1584577	358	54	257	47	299
CRW_00348	SSU_rRNA_eukarya links to Rfam database...	0.35	0.34	0.36	170	1615029	355	51	253	51	333
CRW_00358	SSU_rRNA_eukarya links to Rfam database...	0.39	0.40	0.38	202	1674827	390	57	279	54	305
CRW_00366	SSU_rRNA_eukarya links to Rfam database...	0.33	0.33	0.33	157	1579284	361	57	255	49	325
CRW_00370	SSU_rRNA_eukarya links to Rfam database...	0.37	0.37	0.37	189	1640256	363	64	257	42	317
CRW_00371	SSU_rRNA_eukarya links to Rfam database...	0.44	0.41	0.46	205	1611467	295	42	196	57	291
CRW_00372	SSU_rRNA_eukarya links to Rfam database...	0.41	0.40	0.42	198	1625830	342	48	230	64	300
CRW_00379	SSU_rRNA_eukarya links to Rfam database...	0.43	0.42	0.44	223	2126443	372	38	249	85	311
CRW_00386	SSU_rRNA_eukarya links to Rfam database...	0.28	0.30	0.27	152	1750697	447	70	337	40	363
CRW_00403	SSU_rRNA_eukarya links to Rfam database...	0.28	0.28	0.28	131	1606062	404	68	267	69	333
CRW_00411	SSU_rRNA_eukarya links to Rfam database...	0.39	0.36	0.42	181	1615070	306	41	211	54	315
CRW_00414	SSU_rRNA_eukarya links to Rfam database...	0.36	0.37	0.36	181	1665721	382	54	269	59	314
CRW_00466	SSU_rRNA_bacteria links to Rfam database...	0.70	0.68	0.73	312	1116336	148	19	98	31	146
CRW_00548	5S_rRNA links to Rfam database...	0.86	0.82	0.91	31	7347	6	0	3	3	7
CRW_00552	5S_rRNA links to Rfam database...	0.92	0.87	0.97	34	7105	6	0	1	5	5
CRW_00555	5S_rRNA links to Rfam database...	0.91	0.85	0.97	34	7591	2	0	1	1	6
CRW_00567	5S_rRNA links to Rfam database...	0.74	0.75	0.73	30	7462	14	4	7	3	10
CRW_00570	5S_rRNA links to Rfam database...	0.88	0.89	0.87	33	6865	10	0	5	5	4
CRW_00573	5S_rRNA links to Rfam database...	0.25	0.25	0.26	10	7102	28	1	27	0	30
CRW_00589	SSU_rRNA_bacteria links to Rfam database...	0.33	0.30	0.36	134	1094090	257	24	212	21	311
CRW_00590	SSU_rRNA_bacteria links to Rfam database...	0.36	0.35	0.38	157	1119345	281	41	213	27	295
CRW_00591	SSU_rRNA_bacteria links to Rfam database...	0.62	0.60	0.65	268	1098489	182	28	118	36	178
CRW_00598	SSU_rRNA_eukarya links to Rfam database...	0.39	0.39	0.40	193	1665739	354	59	234	61	298
CRW_00758	SSU_rRNA_eukarya links to Rfam database...	0.35	0.35	0.35	170	1640283	375	51	262	62	313
CRW_00759	SSU_rRNA_eukarya links to Rfam database...	0.31	0.30	0.32	145	1636697	372	51	252	69	336
CRW_00760	SSU_rRNA_eukarya links to Rfam database...	0.37	0.36	0.37	176	1638485	358	65	229	64	310
CRW_00772	SSU_rRNA_bacteria links to Rfam database...	0.40	0.37	0.44	148	945666	215	18	168	29	256
CRW_00789	SSU_rRNA_bacteria links to Rfam database...	0.48	0.44	0.53	196	1137416	209	14	160	35	251
CRW_00795	SSU_rRNA_bacteria links to Rfam database...	0.35	0.33	0.38	131	1152575	263	22	193	48	263
CRW_00849	SSU_rRNA_bacteria links to Rfam database...	0.57	0.56	0.57	265	1117797	226	19	179	28	205
CRW_00997	SSU_rRNA_bacteria links to Rfam database...	0.62	0.60	0.64	280	1135838	187	19	141	27	184
CRW_01153	SSU_rRNA_eukarya links to Rfam database...	0.39	0.39	0.40	194	1606043	347	52	239	56	309
CRW_01171	SSU_rRNA_eukarya links to Rfam database...	0.45	0.44	0.47	221	1593534	302	49	201	52	285
CRW_01300	SSU_rRNA_eukarya links to Rfam database...	0.38	0.37	0.38	193	1693217	355	53	257	45	322
CRW_01484	5S_rRNA links to Rfam database...	0.18	0.18	0.19	7	7467	30	4	25	1	32
CRW_01485	5S_rRNA links to Rfam database...	0.50	0.49	0.51	19	7466	19	3	15	1	20
CRW_01487	5S_rRNA links to Rfam database...	0.12	0.12	0.12	5	7462	36	4	32	0	36
CRW_01489	5S_rRNA links to Rfam database...	0.17	0.18	0.18	7	7463	33	3	30	0	32
CRW_01491	5S_rRNA links to Rfam database...	0.73	0.65	0.82	28	8351	7	0	6	1	15
CRW_01492	5S_rRNA links to Rfam database...	0.80	0.79	0.83	33	7586	12	0	7	5	9
CRW_01494	5S_rRNA links to Rfam database...	0.70	0.68	0.73	27	7103	11	0	10	1	13
CRW_01497	5S_rRNA links to Rfam database...	0.57	0.50	0.65	20	7109	16	0	11	5	20
CRW_01498	5S_rRNA links to Rfam database...	0.95	0.93	0.98	40	8087	5	0	1	4	3
CRW_01499	5S_rRNA links to Rfam database...	0.70	0.61	0.81	25	7970	8	0	6	2	16
CRW_01500	5S_rRNA links to Rfam database...	0.16	0.16	0.17	6	7714	30	5	25	0	32
CRW_01501	5S_rRNA links to Rfam database...	0.82	0.80	0.84	36	8472	10	0	7	3	9
CRW_01508	5S_rRNA links to Rfam database...	0.84	0.81	0.87	34	7962	11	0	5	6	8
CRW_01532	5S_rRNA links to Rfam database...	0.77	0.76	0.78	28	7104	14	0	8	6	9
CRW_01533	5S_rRNA links to Rfam database...	0.79	0.78	0.81	29	7104	13	0	7	6	8
CRW_01534	5S_rRNA links to Rfam database...	0.79	0.78	0.81	29	7104	12	0	7	5	8
CRW_01535	5S_rRNA links to Rfam database...	0.82	0.78	0.85	29	7106	9	0	5	4	8
CRW_01536	5S_rRNA links to Rfam database...	0.77	0.76	0.78	28	6985	9	0	8	1	9
CRW_01537	5S_rRNA links to Rfam database...	0.62	0.57	0.68	21	7109	16	0	10	6	16
CRW_01539	5S_rRNA links to Rfam database...	0.82	0.81	0.83	30	7104	12	0	6	6	7
CRW_01540	5S_rRNA links to Rfam database...	0.76	0.76	0.76	28	7103	15	0	9	6	9
CRW_01541	5S_rRNA links to Rfam database...	0.89	0.86	0.91	32	7105	7	0	3	4	5
CRW_01542	5S_rRNA links to Rfam database...	0.74	0.68	0.81	25	7109	8	0	6	2	12
CRW_01544	5S_rRNA links to Rfam database...	0.79	0.78	0.81	29	7104	10	0	7	3	8
CRW_01548	5S_rRNA links to Rfam database...	0.79	0.78	0.81	29	6985	10	0	7	3	8
CRW_01555	5S_rRNA links to Rfam database...	0.81	0.76	0.88	28	9013	10	0	4	6	9
CRW_01556	5S_rRNA links to Rfam database...	0.83	0.81	0.86	30	7105	9	0	5	4	7
CRW_01557	5S_rRNA links to Rfam database...	0.85	0.84	0.86	31	7104	11	0	5	6	6
CRW_01559	5S_rRNA links to Rfam database...	0.79	0.78	0.81	29	7224	14	0	7	7	8
CRW_01562	5S_rRNA links to Rfam database...	0.89	0.84	0.94	31	7107	9	0	2	7	6
CRW_01563	5S_rRNA links to Rfam database...	0.89	0.84	0.94	31	6870	3	0	2	1	6
CRW_01566	5S_rRNA links to Rfam database...	0.30	0.30	0.31	11	7104	25	5	20	0	26
CRW_01568	5S_rRNA links to Rfam database...	0.78	0.78	0.78	29	7103	13	0	8	5	8
CRW_01569	5S_rRNA links to Rfam database...	0.79	0.78	0.81	29	7104	11	0	7	4	8
CRW_01570	5S_rRNA links to Rfam database...	0.85	0.84	0.86	31	7104	12	0	5	7	6
CRW_01572	5S_rRNA links to Rfam database...	0.25	0.22	0.30	8	6994	19	6	13	0	29
CRW_01573	5S_rRNA links to Rfam database...	0.79	0.78	0.81	29	7224	13	0	7	6	8
CRW_01578	5S_rRNA links to Rfam database...	0.85	0.84	0.86	31	7104	11	0	5	6	6
CRW_01580	5S_rRNA links to Rfam database...	0.69	0.65	0.73	24	7107	13	0	9	4	13
CRW_01581	5S_rRNA links to Rfam database...	0.28	0.27	0.30	10	7107	25	0	23	2	27
CRW_01583	5S_rRNA links to Rfam database...	0.90	0.84	0.97	31	7108	4	0	1	3	6
CRW_01584	5S_rRNA links to Rfam database...	0.90	0.89	0.92	33	7104	7	0	3	4	4
CRW_01590	5S_rRNA links to Rfam database...	0.23	0.24	0.23	9	7101	31	3	27	1	28
CRW_01593	5S_rRNA links to Rfam database...	0.79	0.78	0.81	29	7104	12	0	7	5	8
CRW_01595	5S_rRNA links to Rfam database...	0.46	0.43	0.50	16	8483	20	0	16	4	21
CRW_01599	5S_rRNA links to Rfam database...	0.74	0.73	0.75	27	7104	15	0	9	6	10
CRW_01603	5S_rRNA links to Rfam database...	0.86	0.81	0.91	30	7107	5	0	3	2	7
CRW_01605	5S_rRNA links to Rfam database...	0.73	0.70	0.76	26	7106	13	0	8	5	11
CRW_01606	5S_rRNA links to Rfam database...	0.69	0.62	0.77	23	7110	9	0	7	2	14
CRW_01608	5S_rRNA links to Rfam database...	0.88	0.86	0.89	32	8349	9	0	4	5	5
CRW_01616	5S_rRNA links to Rfam database...	0.79	0.78	0.81	29	7104	13	0	7	6	8
CRW_01617	5S_rRNA links to Rfam database...	0.92	0.89	0.94	33	7105	6	0	2	4	4
CRW_01620	5S_rRNA links to Rfam database...	0.89	0.89	0.89	33	6984	7	0	4	3	4
CRW_01621	5S_rRNA links to Rfam database...	0.72	0.70	0.74	26	7105	14	0	9	5	11
CRW_01623	5S_rRNA links to Rfam database...	0.92	0.89	0.94	33	7105	6	0	2	4	4
CRW_01625	5S_rRNA links to Rfam database...	0.81	0.81	0.81	30	7103	10	0	7	3	7
PDB_00012	mir-TAR links to Rfam database...	1.00	1.00	1.00	7	399	3	0	0	3	0
PDB_00070	tRNA links to Rfam database...	0.68	0.67	0.70	16	2827	8	1	6	1	8
PDB_00213	Gammaretro_CES links to Rfam database...	0.94	0.88	1.00	36	5014	0	0	0	0	5
PDB_00229	tRNA links to Rfam database...	0.96	0.91	1.00	21	2754	0	0	0	0	2
PDB_00327	tRNA links to Rfam database...	0.93	0.91	0.95	21	3059	1	0	1	0	2
PDB_00362	tRNA links to Rfam database...	0.91	0.91	0.91	20	2828	2	0	2	0	2
PDB_00402	tRNA links to Rfam database...	0.93	0.91	0.95	21	2753	1	0	1	0	2
PDB_00431	tRNA links to Rfam database...	0.77	0.75	0.79	15	2192	7	0	4	3	5
PDB_00474	tRNA links to Rfam database...	0.27	0.30	0.26	7	2674	20	2	18	0	16
PDB_00553	mir-TAR links to Rfam database...	1.00	1.00	1.00	11	454	0	0	0	0	0
PDB_00571	tRNA links to Rfam database...	0.87	0.80	0.95	20	3300	1	1	0	0	5
PDB_00667	tRNA links to Rfam database...	0.68	0.68	0.68	15	2828	10	4	3	3	7
PDB_00703	SSU_rRNA_bacteria links to Rfam database...	0.53	0.50	0.56	246	1073403	229	19	177	33	249
PDB_00741	Entero_5_CRE links to Rfam database...	0.87	0.76	1.00	13	690	0	0	0	0	4
PDB_00810	s2m links to Rfam database...	0.77	0.71	0.86	12	1067	3	0	2	1	5
PDB_00828	Purine links to Rfam database...	0.88	0.78	1.00	21	2464	1	0	0	1	6
PDB_00829	Purine links to Rfam database...	0.84	0.75	0.95	18	2259	1	0	1	0	6
PDB_00854	SSU_rRNA_bacteria links to Rfam database...	0.50	0.49	0.52	264	1500266	296	25	223	48	271
PDB_00876	HIV_FE links to Rfam database...	0.92	0.90	0.95	18	971	1	0	1	0	2
PDB_01002	tRNA links to Rfam database...	0.95	0.90	1.00	19	2756	2	0	0	2	2
PDB_01020	Purine links to Rfam database...	0.81	0.74	0.89	17	2259	3	1	1	1	6
PDB_01050	UnaL2 links to Rfam database...	0.96	0.92	1.00	12	618	2	0	0	2	1
PDB_01053	tRNA links to Rfam database...	1.00	1.00	1.00	16	1362	0	0	0	0	0
PDB_01073	SAM links to Rfam database...	0.86	0.74	1.00	25	4346	1	0	0	1	9
PDB_01088	SSU_rRNA_bacteria links to Rfam database...	0.46	0.43	0.49	236	1470988	271	34	212	25	311
PDB_01103	SSU_rRNA_bacteria links to Rfam database...	0.55	0.54	0.56	301	1605989	279	31	207	41	261
PDB_01105	SSU_rRNA_bacteria links to Rfam database...	0.58	0.56	0.60	303	1433467	242	16	185	41	237
PDB_01114	TPP links to Rfam database...	0.71	0.63	0.81	17	2829	4	0	4	0	10
PDB_01120	SSU_rRNA_bacteria links to Rfam database...	0.49	0.44	0.55	232	1204703	216	20	173	23	295
PDB_01152	HIV_FS2 links to Rfam database...	0.96	0.93	1.00	13	548	0	0	0	0	1
PDB_01236	ykoK links to Rfam database...	0.67	0.65	0.69	35	11577	19	1	15	3	19
PDB_01273	SSU_rRNA_bacteria links to Rfam database...	0.49	0.47	0.51	232	1117807	258	16	205	37	259
RFA_00389	Hammerhead_3 links to Rfam database...	0.93	0.93	0.93	14	1416	4	0	1	3	1
RFA_00390	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	3	0	0	3	0
RFA_00391	Hammerhead_3 links to Rfam database...	0.62	0.60	0.64	9	1417	7	2	3	2	6
RFA_00396	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	2	0	0	2	1
RFA_00402	Hammerhead_3 links to Rfam database...	0.83	0.80	0.86	12	1417	3	0	2	1	3
RFA_00409	Hammerhead_3 links to Rfam database...	0.62	0.60	0.64	9	1417	6	1	4	1	6
RFA_00416	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1470	3	0	0	3	0
RFA_00433	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00434	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00436	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00440	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1470	3	0	0	3	0
RFA_00442	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00444	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1525	2	0	0	2	0
RFA_00583	Y_RNA links to Rfam database...	0.93	0.93	0.93	14	4935	6	0	1	5	1
RFA_00584	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	2911	15	0	0	15	0
RFA_00585	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4836	3	0	0	3	0
RFA_00586	Y_RNA links to Rfam database...	0.97	0.93	1.00	14	3902	10	0	0	10	1
RFA_00587	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4836	10	0	0	10	0
RFA_00588	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4545	15	0	0	15	0
RFA_00589	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4356	18	0	0	18	0
RFA_00594	Y_RNA links to Rfam database...	0.97	0.93	1.00	14	2761	10	0	0	10	1
RFA_00596	Y_RNA links to Rfam database...	0.00	0.00	0.00	0	5984	20	5	6	9	15
RFA_00599	Telomerase-vert links to Rfam database...	0.71	0.73	0.70	81	101359	59	10	25	24	30
RFA_00601	Telomerase-vert links to Rfam database...	0.33	0.36	0.30	41	99097	108	37	60	11	73
RFA_00602	Telomerase-vert links to Rfam database...	0.63	0.67	0.58	78	101341	68	25	31	12	38
RFA_00658	Hammerhead_1 links to Rfam database...	0.59	0.50	0.70	7	1118	5	0	3	2	7
RFA_00664	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	980	11	0	10	1	14
RFA_00667	Hammerhead_1 links to Rfam database...	0.29	0.29	0.31	4	977	10	1	8	1	10
RFA_00668	Hammerhead_1 links to Rfam database...	0.53	0.43	0.67	6	981	3	0	3	0	8
RFA_00672	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	897	6	0	6	0	13
RFA_00673	Hammerhead_1 links to Rfam database...	0.42	0.36	0.50	5	1118	6	0	5	1	9
RFA_00674	Hammerhead_1 links to Rfam database...	0.96	0.93	1.00	13	1115	1	0	0	1	1
RFA_00675	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	980	11	0	10	1	14
RFA_00677	Hammerhead_1 links to Rfam database...	0.59	0.57	0.62	8	977	7	0	5	2	6
RFA_00678	Hammerhead_1 links to Rfam database...	0.53	0.29	1.00	4	942	0	0	0	0	10
RFA_00680	Hammerhead_1 links to Rfam database...	0.74	0.71	0.77	10	1115	6	0	3	3	4
RFA_00704	Hammerhead_1 links to Rfam database...	0.32	0.21	0.50	3	984	5	0	3	2	11
RFA_00707	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	1027	8	1	7	0	14
RFA_00715	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	936	10	0	10	0	14
RFA_00717	Hammerhead_1 links to Rfam database...	0.66	0.64	0.69	9	890	4	0	4	0	5
RFA_00730	s2m links to Rfam database...	0.75	0.75	0.75	9	891	5	0	3	2	3
RFA_00731	s2m links to Rfam database...	0.83	0.83	0.83	10	891	4	0	2	2	2
RFA_00733	s2m links to Rfam database...	0.83	0.83	0.83	10	891	4	0	2	2	2
RFA_00734	s2m links to Rfam database...	0.83	0.83	0.83	10	891	5	0	2	3	2
RFA_00736	s2m links to Rfam database...	0.83	0.83	0.83	10	891	4	0	2	2	2
RFA_00737	s2m links to Rfam database...	0.83	0.83	0.83	10	891	4	0	2	2	2
RFA_00745	s2m links to Rfam database...	0.66	0.67	0.67	8	934	6	1	3	2	4
RFA_00749	s2m links to Rfam database...	0.83	0.83	0.83	10	891	4	0	2	2	2
RFA_00758	s2m links to Rfam database...	0.60	0.58	0.64	7	892	5	1	3	1	5
RFA_00762	s2m links to Rfam database...	0.64	0.67	0.62	8	890	6	1	4	1	4
RFA_00763	s2m links to Rfam database...	0.83	0.83	0.83	10	891	4	0	2	2	2
RFA_00764	s2m links to Rfam database...	0.83	0.83	0.83	10	891	4	0	2	2	2
RFA_00765	s2m links to Rfam database...	0.83	0.83	0.83	10	891	4	0	2	2	2
RFA_00786	Gammaretro_CES links to Rfam database...	0.48	0.44	0.54	14	5024	14	1	11	2	18
RFA_00791	Gammaretro_CES links to Rfam database...	0.89	0.88	0.90	28	5120	6	2	1	3	4
RFA_00792	Gammaretro_CES links to Rfam database...	0.95	0.94	0.97	30	5019	3	0	1	2	2
RFA_00801	Gammaretro_CES links to Rfam database...	0.81	0.78	0.83	25	5020	8	0	5	3	7
SPR_00007	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	1	0	0	1	0
SPR_00009	tRNA links to Rfam database...	0.04	0.05	0.05	1	2828	21	2	19	0	19
SPR_00010	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	1	0	0	1	0
SPR_00012	tRNA links to Rfam database...	0.23	0.25	0.22	5	2827	18	2	16	0	15
SPR_00013	tRNA links to Rfam database...	0.65	0.65	0.65	13	2830	7	0	7	0	7
SPR_00016	tRNA links to Rfam database...	0.80	0.76	0.84	16	2831	3	0	3	0	5
SPR_00017	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00025	tRNA links to Rfam database...	0.73	0.75	0.71	15	2905	8	0	6	2	5
SPR_00026	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	1	0	0	1	0
SPR_00027	tRNA links to Rfam database...	0.18	0.19	0.18	4	2904	19	2	16	1	17
SPR_00036	tRNA links to Rfam database...	0.87	0.80	0.94	16	2758	2	0	1	1	4
SPR_00045	tRNA links to Rfam database...	0.95	0.95	0.95	21	2828	5	0	1	4	1
SPR_00064	tRNA links to Rfam database...	0.54	0.57	0.52	12	2827	11	2	9	0	9
SPR_00065	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	1	0	0	1	0
SPR_00066	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	1	0	0	1	0
SPR_00068	tRNA links to Rfam database...	0.74	0.76	0.73	16	2828	9	3	3	3	5
SPR_00070	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00074	tRNA links to Rfam database...	0.80	0.80	0.80	16	2830	5	4	0	1	4
SPR_00079	tRNA links to Rfam database...	0.83	0.68	1.00	13	2472	1	0	0	1	6
SPR_00086	tRNA links to Rfam database...	0.32	0.33	0.32	7	2828	15	4	11	0	14
SPR_00087	tRNA links to Rfam database...	0.95	0.90	1.00	18	2832	0	0	0	0	2
SPR_00088	tRNA links to Rfam database...	0.95	0.90	1.00	18	2832	0	0	0	0	2
SPR_00089	tRNA links to Rfam database...	0.95	0.90	1.00	18	2832	0	0	0	0	2
SPR_00090	tRNA links to Rfam database...	0.63	0.65	0.62	13	2829	9	2	6	1	7
SPR_00091	tRNA links to Rfam database...	0.95	0.90	1.00	18	2832	0	0	0	0	2
SPR_00095	tRNA links to Rfam database...	0.78	0.76	0.80	16	2830	4	2	2	0	5
SPR_00111	tRNA links to Rfam database...	1.00	1.00	1.00	21	2680	1	0	0	1	0
SPR_00112	tRNA links to Rfam database...	1.00	1.00	1.00	21	2680	2	0	0	2	0
SPR_00115	tRNA links to Rfam database...	0.88	0.86	0.90	18	2681	2	0	2	0	3
SPR_00117	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	2	0	0	2	0
SPR_00139	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	1	0	0	1	0
SPR_00153	tRNA links to Rfam database...	0.40	0.38	0.42	8	2907	11	3	8	0	13
SPR_00155	tRNA links to Rfam database...	0.51	0.57	0.46	12	2900	14	3	11	0	9
SPR_00156	tRNA links to Rfam database...	0.51	0.57	0.46	12	2900	14	5	9	0	9
SPR_00176	tRNA links to Rfam database...	0.50	0.55	0.46	11	2826	13	2	11	0	9
SPR_00177	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	6	0	0	6	0
SPR_00178	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00191	tRNA links to Rfam database...	0.18	0.19	0.19	4	2829	18	4	13	1	17
SPR_00200	tRNA links to Rfam database...	0.74	0.76	0.73	16	2828	8	3	3	2	5
SPR_00224	tRNA links to Rfam database...	0.41	0.45	0.38	9	3717	20	5	10	5	11
SPR_00271	tRNA links to Rfam database...	0.71	0.71	0.71	15	2829	6	1	5	0	6
SPR_00273	tRNA links to Rfam database...	0.52	0.57	0.48	12	2825	13	2	11	0	9
SPR_00276	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00277	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	1	0	0	1	0
SPR_00294	tRNA links to Rfam database...	0.74	0.76	0.73	16	2828	6	2	4	0	5
SPR_00295	tRNA links to Rfam database...	0.95	0.95	0.95	20	2754	2	0	1	1	1
SPR_00314	tRNA links to Rfam database...	0.74	0.81	0.68	17	2901	11	0	8	3	4
SPR_00315	tRNA links to Rfam database...	0.74	0.81	0.68	17	2901	10	0	8	2	4
SPR_00317	tRNA links to Rfam database...	0.53	0.60	0.48	12	2901	13	7	6	0	8
SPR_00318	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	4	0	0	4	0
SPR_00321	tRNA links to Rfam database...	1.00	1.00	1.00	21	2982	3	0	0	3	0
SPR_00333	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	0	0	0	0	0
SPR_00352	tRNA links to Rfam database...	0.58	0.57	0.60	12	2906	8	0	8	0	9
SPR_00353	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00357	tRNA links to Rfam database...	0.71	0.76	0.67	16	2902	8	1	7	0	5
SPR_00358	tRNA links to Rfam database...	0.95	0.95	0.95	19	2906	4	0	1	3	1
SPR_00370	tRNA links to Rfam database...	0.47	0.52	0.42	11	2749	15	3	12	0	10
SPR_00386	tRNA links to Rfam database...	0.70	0.70	0.70	14	4166	13	0	6	7	6
SPR_00414	tRNA links to Rfam database...	0.77	0.86	0.69	18	3544	11	7	1	3	3
SPR_00415	tRNA links to Rfam database...	0.77	0.86	0.69	18	3544	8	7	1	0	3
SPR_00417	tRNA links to Rfam database...	0.71	0.73	0.70	16	3547	11	0	7	4	6
SPR_00418	tRNA links to Rfam database...	0.86	0.82	0.90	18	3550	7	0	2	5	4
SPR_00434	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	1	0	0	1	0
SPR_00435	tRNA links to Rfam database...	0.74	0.76	0.73	16	2828	8	0	6	2	5
SPR_00436	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	2	0	0	2	0
SPR_00437	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	2	0	0	2	0
SPR_00438	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	0	0	0	0	0
SPR_00452	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00455	tRNA links to Rfam database...	0.68	0.71	0.65	15	2827	8	4	4	0	6
SPR_00456	tRNA links to Rfam database...	0.52	0.57	0.48	12	2825	15	2	11	2	9
SPR_00476	tRNA links to Rfam database...	0.68	0.71	0.65	15	2752	8	1	7	0	6
SPR_00479	tRNA links to Rfam database...	0.57	0.57	0.57	12	2829	10	0	9	1	9
SPR_00482	tRNA links to Rfam database...	0.93	0.90	0.95	19	2681	1	0	1	0	2
SPR_00483	tRNA links to Rfam database...	0.86	0.86	0.86	18	2829	4	0	3	1	3
SPR_00487	tRNA links to Rfam database...	1.00	1.00	1.00	22	2679	0	0	0	0	0
SPR_00493	tRNA links to Rfam database...	0.95	0.95	0.95	21	2753	1	0	1	0	1
SPR_00496	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	0	0	0	0	0
SPR_00497	tRNA links to Rfam database...	0.68	0.71	0.65	15	2752	8	1	7	0	6
SPR_00502	tRNA links to Rfam database...	0.83	0.81	0.85	17	2906	3	0	3	0	4
SPR_00504	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	2	0	0	2	0
SPR_00505	tRNA links to Rfam database...	0.95	0.95	0.95	19	2906	1	0	1	0	1
SPR_00506	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00509	tRNA links to Rfam database...	0.50	0.55	0.46	11	2902	13	1	12	0	9
SPR_00512	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	2	0	0	2	0
SPR_00513	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00518	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00548	tRNA links to Rfam database...	0.82	0.86	0.78	18	3380	5	4	1	0	3
SPR_00557	tRNA links to Rfam database...	0.31	0.33	0.30	7	2827	17	1	15	1	14
SPR_00561	tRNA links to Rfam database...	0.39	0.43	0.36	9	2825	17	1	15	1	12
SPR_00590	tRNA links to Rfam database...	0.95	0.95	0.95	19	2983	4	0	1	3	1
SPR_00593	tRNA links to Rfam database...	0.58	0.63	0.55	12	2753	11	3	7	1	7
SPR_00595	tRNA links to Rfam database...	0.76	0.76	0.76	16	2754	6	2	3	1	5
SPR_00598	tRNA links to Rfam database...	0.73	0.76	0.70	16	2980	8	1	6	1	5
SPR_00610	tRNA links to Rfam database...	0.83	0.81	0.85	17	2536	4	0	3	1	4
SPR_00620	tRNA links to Rfam database...	0.71	0.76	0.67	16	2979	9	4	4	1	5
SPR_00721	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	2	0	0	2	0
SPR_00722	tRNA links to Rfam database...	0.76	0.80	0.73	16	2904	6	4	2	0	4
SPR_00758	tRNA links to Rfam database...	0.47	0.52	0.42	11	2977	19	3	12	4	10
SPR_00760	tRNA links to Rfam database...	0.31	0.33	0.29	7	3546	21	0	17	4	14
SPR_00777	tRNA links to Rfam database...	0.49	0.55	0.44	11	2603	15	5	9	1	9
SPR_00867	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	3	0	0	3	0
SPR_00868	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	4	0	0	4	0
SPR_00943	tRNA links to Rfam database...	1.00	1.00	1.00	20	2536	1	0	0	1	0
SPR_00957	tRNA links to Rfam database...	0.81	0.81	0.81	17	2982	6	0	4	2	4
SPR_01040	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	1	0	0	1	0
SPR_01088	tRNA links to Rfam database...	0.18	0.19	0.19	4	2905	21	0	17	4	17
SPR_01095	tRNA links to Rfam database...	0.76	0.76	0.76	16	2829	9	0	5	4	5
SPR_01106	tRNA links to Rfam database...	0.98	0.95	1.00	20	2536	1	0	0	1	1
SPR_01117	tRNA links to Rfam database...	0.50	0.52	0.48	11	2980	12	1	11	0	10
SPR_01157	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	4	0	0	4	0
SRP_00006	Metazoa_SRP links to Rfam database...	0.97	0.96	0.97	97	45653	11	0	3	8	4
SRP_00008	Bacteria_small_SRP links to Rfam database...	1.00	1.00	1.00	25	2901	0	0	0	0	0
SRP_00011	Plant_SRP links to Rfam database...	0.38	0.38	0.39	39	46260	62	5	56	1	65
SRP_00015	Plant_SRP links to Rfam database...	0.78	0.77	0.80	76	46265	26	2	17	7	23
SRP_00020	Bacteria_small_SRP links to Rfam database...	0.77	0.79	0.76	26	5531	8	1	7	0	7
SRP_00024	Bacteria_large_SRP links to Rfam database...	0.44	0.44	0.44	38	37588	49	8	41	0	49
SRP_00026	Bacteria_large_SRP links to Rfam database...	0.70	0.70	0.69	62	36766	34	5	23	6	26
SRP_00027	Bacteria_large_SRP links to Rfam database...	0.68	0.67	0.70	58	37045	27	0	25	2	29
SRP_00030	Bacteria_large_SRP links to Rfam database...	0.78	0.78	0.78	69	36767	22	3	17	2	19
SRP_00031	Bacteria_large_SRP links to Rfam database...	0.63	0.65	0.61	58	36220	42	5	32	5	31
SRP_00037	Bacteria_large_SRP links to Rfam database...	0.63	0.64	0.61	56	36493	38	5	31	2	31
SRP_00038	Bacteria_small_SRP links to Rfam database...	0.05	0.06	0.06	2	5017	31	2	29	0	31
SRP_00042	Bacteria_small_SRP links to Rfam database...	0.56	0.60	0.54	15	3977	15	1	12	2	10
SRP_00044	Bacteria_small_SRP links to Rfam database...	0.89	0.91	0.88	29	6072	6	1	3	2	3
SRP_00046	Bacteria_small_SRP links to Rfam database...	0.97	0.97	0.97	31	4721	3	0	1	2	1
SRP_00050	Metazoa_SRP links to Rfam database...	0.92	0.91	0.94	90	44754	9	1	5	3	9
SRP_00051	Bacteria_small_SRP links to Rfam database...	0.31	0.33	0.30	10	5427	25	5	18	2	20
SRP_00054	Bacteria_small_SRP links to Rfam database...	0.25	0.25	0.26	8	5534	23	3	20	0	24
SRP_00057	Bacteria_small_SRP links to Rfam database...	0.78	0.80	0.76	28	6291	11	2	7	2	7
SRP_00058	Bacteria_small_SRP links to Rfam database...	0.87	0.88	0.86	30	5743	9	1	4	4	4
SRP_00066	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	45352	99	10	89	0	100
SRP_00072	Bacteria_small_SRP links to Rfam database...	0.30	0.31	0.29	9	6297	23	1	21	1	20
SRP_00074	Bacteria_small_SRP links to Rfam database...	0.16	0.17	0.15	5	6522	32	4	24	4	24
SRP_00075	Bacteria_small_SRP links to Rfam database...	0.58	0.59	0.57	20	5530	17	2	13	2	14
SRP_00077	Bacteria_small_SRP links to Rfam database...	0.36	0.38	0.35	14	6630	26	3	23	0	23
SRP_00081	Bacteria_small_SRP links to Rfam database...	0.68	0.74	0.62	23	5528	14	1	13	0	8
SRP_00084	Bacteria_small_SRP links to Rfam database...	0.78	0.79	0.77	27	5425	8	1	7	0	7
SRP_00086	Metazoa_SRP links to Rfam database...	0.73	0.73	0.74	73	44154	29	1	25	3	27
SRP_00088	Bacteria_large_SRP links to Rfam database...	0.70	0.71	0.69	63	34100	29	4	24	1	26
SRP_00089	Bacteria_large_SRP links to Rfam database...	0.92	0.92	0.92	83	35688	7	1	6	0	7
SRP_00090	Bacteria_large_SRP links to Rfam database...	0.84	0.84	0.84	76	35420	20	0	15	5	14
SRP_00094	Bacteria_small_SRP links to Rfam database...	0.84	0.88	0.81	21	4069	7	1	4	2	3
SRP_00095	Bacteria_small_SRP links to Rfam database...	0.50	0.52	0.48	13	3978	14	3	11	0	12
SRP_00098	Bacteria_small_SRP links to Rfam database...	0.75	0.78	0.73	29	6401	13	1	10	2	8
SRP_00102	Metazoa_SRP links to Rfam database...	0.75	0.75	0.75	76	44450	26	1	24	1	25
SRP_00103	Metazoa_SRP links to Rfam database...	0.53	0.53	0.52	54	45348	51	4	45	2	48
SRP_00105	Bacteria_small_SRP links to Rfam database...	0.15	0.15	0.16	5	5534	26	2	24	0	29
SRP_00107	Bacteria_small_SRP links to Rfam database...	0.12	0.16	0.11	3	3627	27	9	16	2	16
SRP_00121	Bacteria_small_SRP links to Rfam database...	0.80	0.80	0.80	20	4253	6	0	5	1	5
SRP_00128	Bacteria_small_SRP links to Rfam database...	0.76	0.81	0.73	29	6746	14	1	10	3	7
SRP_00132	Bacteria_small_SRP links to Rfam database...	0.69	0.72	0.66	21	4819	14	0	11	3	8
SRP_00134	Bacteria_large_SRP links to Rfam database...	0.64	0.69	0.59	20	5961	19	3	11	5	9
SRP_00141	Bacteria_small_SRP links to Rfam database...	0.73	0.71	0.76	29	6290	10	1	8	1	12
SRP_00152	Plant_SRP links to Rfam database...	0.52	0.51	0.52	53	45651	49	10	39	0	50
SRP_00161	Bacteria_small_SRP links to Rfam database...	0.86	0.86	0.86	19	2828	3	0	3	0	3
SRP_00162	Bacteria_small_SRP links to Rfam database...	0.89	0.91	0.88	21	2902	5	0	3	2	2
SRP_00163	Bacteria_small_SRP links to Rfam database...	0.88	0.88	0.88	23	3460	3	0	3	0	3
SRP_00164	Bacteria_small_SRP links to Rfam database...	0.38	0.40	0.37	14	6865	24	3	21	0	21
SRP_00170	Bacteria_small_SRP links to Rfam database...	0.78	0.80	0.77	20	4069	7	1	5	1	5
SRP_00171	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	45365	86	13	73	0	88
SRP_00173	Bacteria_large_SRP links to Rfam database...	0.78	0.79	0.77	71	38134	27	3	18	6	19
SRP_00174	Bacteria_large_SRP links to Rfam database...	0.76	0.76	0.76	65	38695	25	6	15	4	21
SRP_00178	Plant_SRP links to Rfam database...	0.77	0.76	0.77	78	45652	26	7	16	3	24
SRP_00179	Plant_SRP links to Rfam database...	0.80	0.79	0.81	83	45954	23	5	14	4	22
SRP_00181	Plant_SRP links to Rfam database...	0.53	0.48	0.58	49	45972	36	5	30	1	53
SRP_00182	Plant_SRP links to Rfam database...	0.58	0.58	0.58	59	45955	45	10	32	3	42
SRP_00184	Plant_SRP links to Rfam database...	0.65	0.64	0.67	64	45960	37	6	26	5	36
SRP_00188	Plant_SRP links to Rfam database...	0.21	0.22	0.21	17	31045	63	8	55	0	62
SRP_00194	Bacteria_small_SRP links to Rfam database...	0.77	0.81	0.74	17	3217	11	0	6	5	4
SRP_00200	Bacteria_small_SRP links to Rfam database...	0.79	0.81	0.78	29	6866	10	1	7	2	7
SRP_00209	Bacteria_small_SRP links to Rfam database...	0.57	0.59	0.55	16	4627	15	1	12	2	11
SRP_00213	Bacteria_small_SRP links to Rfam database...	0.81	0.84	0.78	21	4159	6	1	5	0	4
SRP_00215	Bacteria_small_SRP links to Rfam database...	0.84	0.84	0.84	21	3215	4	0	4	0	4
SRP_00227	Bacteria_small_SRP links to Rfam database...	0.92	0.94	0.91	29	5119	3	1	2	0	2
SRP_00228	Metazoa_SRP links to Rfam database...	0.94	0.94	0.94	89	45356	16	0	6	10	6
SRP_00231	Bacteria_small_SRP links to Rfam database...	0.90	0.91	0.89	31	5425	4	1	3	0	3
SRP_00233	Bacteria_small_SRP links to Rfam database...	0.91	0.88	0.94	29	5120	2	0	2	0	4
SRP_00234	Bacteria_large_SRP links to Rfam database...	0.79	0.79	0.79	68	36229	27	0	18	9	18
SRP_00243	Bacteria_small_SRP links to Rfam database...	0.97	0.94	1.00	29	5122	1	0	0	1	2
SRP_00244	Bacteria_small_SRP links to Rfam database...	0.56	0.51	0.61	20	6870	13	3	10	0	19
SRP_00250	Bacteria_small_SRP links to Rfam database...	0.77	0.81	0.74	29	6747	12	1	9	2	7
SRP_00251	Bacteria_small_SRP links to Rfam database...	0.74	0.78	0.70	28	6981	13	1	11	1	8
SRP_00266	Bacteria_small_SRP links to Rfam database...	0.75	0.72	0.78	21	4629	7	0	6	1	8
SRP_00268	Bacteria_small_SRP links to Rfam database...	0.93	0.93	0.93	25	4159	4	1	1	2	2
SRP_00269	Bacteria_small_SRP links to Rfam database...	0.42	0.42	0.42	14	5017	19	2	17	0	19
SRP_00270	Bacteria_small_SRP links to Rfam database...	0.43	0.45	0.41	14	4622	20	2	18	0	17
SRP_00271	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	3213	27	4	23	0	24
SRP_00273	Bacteria_small_SRP links to Rfam database...	0.84	0.85	0.83	34	6745	10	1	6	3	6
SRP_00274	Bacteria_small_SRP links to Rfam database...	0.93	0.95	0.92	36	6864	5	1	2	2	2
SRP_00295	Bacteria_small_SRP links to Rfam database...	0.96	0.97	0.95	37	6864	5	1	1	3	1
SRP_00303	Bacteria_small_SRP links to Rfam database...	0.81	0.84	0.77	27	6635	9	1	7	1	5
SRP_00308	Bacteria_large_SRP links to Rfam database...	0.66	0.68	0.64	60	36221	37	6	28	3	28
SRP_00310	Bacteria_small_SRP links to Rfam database...	0.89	0.91	0.88	21	2902	6	0	3	3	2
SRP_00312	Bacteria_small_SRP links to Rfam database...	0.35	0.37	0.34	10	4157	19	4	15	0	17
SRP_00315	Bacteria_small_SRP links to Rfam database...	0.87	0.87	0.87	20	2903	4	0	3	1	3
SRP_00317	Metazoa_SRP links to Rfam database...	0.78	0.77	0.79	75	45055	29	0	20	9	23
SRP_00318	Bacteria_small_SRP links to Rfam database...	0.87	0.87	0.87	20	2980	4	0	3	1	3
SRP_00325	Bacteria_small_SRP links to Rfam database...	1.00	1.00	1.00	33	4338	0	0	0	0	0
SRP_00326	Bacteria_small_SRP links to Rfam database...	0.56	0.58	0.55	18	5017	15	3	12	0	13
SRP_00333	Bacteria_small_SRP links to Rfam database...	0.84	0.85	0.83	29	5116	6	0	6	0	5
SRP_00335	Bacteria_large_SRP links to Rfam database...	0.32	0.44	0.23	17	35171	79	26	31	22	22
SRP_00337	Bacteria_large_SRP links to Rfam database...	0.76	0.77	0.76	70	35419	28	2	20	6	21
SRP_00338	Bacteria_small_SRP links to Rfam database...	0.97	0.97	0.97	35	5424	2	0	1	1	1
SRP_00341	Bacteria_small_SRP links to Rfam database...	0.47	0.48	0.45	15	4720	19	0	18	1	16
SRP_00342	Bacteria_small_SRP links to Rfam database...	0.61	0.64	0.59	16	3978	16	1	10	5	9
SRP_00347	Metazoa_SRP links to Rfam database...	0.78	0.78	0.79	75	46570	24	4	16	4	21
SRP_00350	Bacteria_small_SRP links to Rfam database...	0.34	0.33	0.36	9	3891	16	2	14	0	18
SRP_00356	Bacteria_small_SRP links to Rfam database...	0.84	0.87	0.81	26	5018	6	0	6	0	4
SRP_00357	Bacteria_small_SRP links to Rfam database...	0.96	0.97	0.95	35	5319	3	1	1	1	1
SRP_00358	Bacteria_small_SRP links to Rfam database...	0.96	0.97	0.94	34	6292	3	1	1	1	1
SRP_00367	Bacteria_small_SRP links to Rfam database...	0.96	0.97	0.94	34	6750	3	1	1	1	1
SRP_00368	Metazoa_SRP links to Rfam database...	0.68	0.67	0.69	66	43861	32	5	24	3	32
SRP_00369	Bacteria_small_SRP links to Rfam database...	0.96	0.97	0.94	34	5742	3	1	1	1	1
SRP_00383	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	3217	23	2	21	0	24
TMR_00017	tmRNA links to Rfam database...	0.49	0.44	0.54	45	67078	42	5	33	4	57
TMR_00018	tmRNA links to Rfam database...	0.38	0.37	0.40	34	64535	55	13	38	4	58
TMR_00038	tmRNA links to Rfam database...	0.26	0.25	0.26	28	71146	85	15	64	6	82
TMR_00042	tmRNA links to Rfam database...	0.29	0.30	0.29	29	62736	74	13	57	4	69
TMR_00046	tmRNA links to Rfam database...	0.60	0.58	0.62	56	62745	44	6	28	10	40
TMR_00048	tmRNA links to Rfam database...	0.40	0.41	0.40	39	64882	69	13	46	10	56
TMR_00080	tmRNA links to Rfam database...	0.43	0.42	0.44	40	70410	50	15	35	0	56
TMR_00082	tmRNA links to Rfam database...	0.29	0.28	0.30	27	67807	64	9	53	2	69
TMR_00123	tmRNA links to Rfam database...	0.53	0.51	0.55	52	66335	52	4	39	9	49
TMR_00137	tmRNA links to Rfam database...	0.37	0.34	0.41	30	61001	53	6	38	9	59
TMR_00142	tmRNA links to Rfam database...	0.57	0.58	0.56	59	70771	61	13	33	15	43
TMR_00207	tmRNA links to Rfam database...	0.43	0.40	0.48	41	72304	50	5	40	5	62
TMR_00257	tmRNA links to Rfam database...	0.25	0.22	0.27	22	67080	65	2	57	6	76
TMR_00271	tmRNA links to Rfam database...	0.64	0.62	0.67	56	64177	40	6	22	12	35
TMR_00332	tmRNA links to Rfam database...	0.45	0.40	0.50	40	67081	45	2	38	5	59
TMR_00366	tmRNA links to Rfam database...	0.52	0.50	0.53	50	67802	55	12	32	11	50
TMR_00378	tmRNA links to Rfam database...	0.24	0.25	0.24	24	67797	86	17	58	11	73
TMR_00399	tmRNA links to Rfam database...	0.44	0.43	0.47	40	64894	52	16	30	6	54
TMR_00404	tmRNA links to Rfam database...	0.56	0.58	0.55	53	67431	62	11	33	18	39
TMR_00427	tmRNA links to Rfam database...	0.45	0.42	0.48	41	67443	49	10	34	5	56
TMR_00443	tmRNA links to Rfam database...	0.57	0.51	0.65	53	67079	36	6	23	7	51
TMR_00451	tmRNA links to Rfam database...	0.19	0.19	0.18	17	63453	80	18	58	4	72
TMR_00458	tmRNA links to Rfam database...	0.32	0.30	0.35	28	63465	60	11	42	7	65
TMR_00469	tmRNA links to Rfam database...	0.53	0.53	0.53	53	64520	51	13	34	4	47
TMR_00472	tmRNA links to Rfam database...	0.64	0.64	0.64	62	64523	43	12	23	8	35
TMR_00519	tmRNA links to Rfam database...	0.33	0.32	0.35	30	63105	69	8	47	14	65
TMR_00520	tmRNA links to Rfam database...	0.44	0.41	0.48	41	63104	56	9	36	11	58
TMR_00522	tmRNA links to Rfam database...	0.36	0.35	0.38	34	63100	65	12	44	9	63
TMR_00528	tmRNA links to Rfam database...	0.36	0.36	0.35	35	63091	75	20	44	11	62
TMR_00540	tmRNA links to Rfam database...	0.35	0.35	0.36	36	73436	76	10	54	12	68
TMR_00568	tmRNA links to Rfam database...	0.51	0.51	0.53	50	60631	51	6	39	6	49
TMR_00571	tmRNA links to Rfam database...	0.65	0.64	0.66	63	60631	44	7	25	12	36
TMR_00580	tmRNA links to Rfam database...	0.41	0.41	0.41	41	60625	63	15	45	3	59
TMR_00584	tmRNA links to Rfam database...	0.63	0.61	0.65	59	60984	45	3	29	13	38
TMR_00586	tmRNA links to Rfam database...	0.41	0.41	0.41	40	60977	63	11	47	5	57
TMR_00616	tmRNA links to Rfam database...	0.42	0.41	0.42	41	67063	65	12	45	8	58
TMR_00699	tmRNA links to Rfam database...	0.67	0.62	0.72	63	67074	29	4	20	5	39
TMR_00702	tmRNA links to Rfam database...	0.36	0.32	0.40	32	67081	57	5	43	9	68
TMR_00703	tmRNA links to Rfam database...	0.59	0.56	0.62	55	67439	43	6	28	9	44

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Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.

Table of contents:

Overview

Performance plots

Performance of RNAalifold(20) - scored higher in this pairwise comparison

1. Total counts & total scores for RNAalifold(20)

2. Individual counts for RNAalifold(20) [ download as .csv ]

Performance of Contrafold - scored lower in this pairwise comparison

1. Total counts & total scores for Contrafold

2. Individual counts for Contrafold [ download as .csv ]