CompaRNA - on-line benchmarks of RNA structure prediction methods

Laboratory of Structural Bioinformatics @ Adam Mickiewicz University in Poznan

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Overview

Metric	RNAalifold(20)		RNAwolf
MCC	0.705	>	0.414
Average MCC ± 95% Confidence Intervals	0.740 ± 0.018	>	0.487 ± 0.021
Sensitivity	0.577	>	0.423
Positive Predictive Value	0.863	>	0.408
Total TP	19181	>	14080
Total TN	15449003	>	15436714
Total FP	3695	<	23980
Total FP CONTRA	537	<	2980
Total FP INCONS	2496	<	17443
Total FP COMP	662	<	3557
Total FN	14089	<	19190
P-value	3.56938820447e-08

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Performance plots

Comparison of performance of RNAalifold(20) and RNAwolf. Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data (individual counts for RNAalifold(20) and RNAwolf).
Average Matthews Correlation Coefficients (MCC) with 95% confidence intervals (CIs) were plotted for different RNA families, for which at least 3 members were present in the benchmarking dataset. 'n' denotes the number of MCCs used to calculate the average and CI. See tables below for raw data (individual counts for RNAalifold(20) and RNAwolf).
Comparison of average Matthews Correlation Coefficients (MCCs) for RNAalifold(20) and RNAwolf. The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data (individual counts for RNAalifold(20) and RNAwolf).

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Performance of RNAalifold(20) - scored higher in this pairwise comparison

1. Total counts & total scores for RNAalifold(20)

Total Base Pair Counts
Total TP	19181
Total TN	15449003
Total FP	3695
Total FP CONTRA	537
Total FP INCONS	2496
Total FP COMP	662
Total FN	14089

Total Scores
MCC	0.705
Average MCC ± 95% Confidence Intervals	0.740 ± 0.018
Sensitivity	0.577
Positive Predictive Value	0.863
Nr of predictions	565

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2. Individual counts for RNAalifold(20) [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00004	RNaseP_bact_a links to Rfam database...	0.58	0.45	0.75	44	47836	15	1	14	0	53
ASE_00005	RNaseP_bact_a links to Rfam database...	0.64	0.49	0.85	57	57903	10	1	9	0	60
ASE_00006	RNaseP_bact_a links to Rfam database...	0.68	0.56	0.83	52	47523	12	0	11	1	41
ASE_00007	RNaseP_bact_a links to Rfam database...	0.75	0.63	0.90	69	59608	8	1	7	0	41
ASE_00012	RNaseP_bact_a links to Rfam database...	0.55	0.45	0.68	55	73839	30	1	25	4	68
ASE_00018	RNaseP_bact_a links to Rfam database...	0.74	0.60	0.91	80	80513	8	3	5	0	54
ASE_00020	RNaseP_bact_a links to Rfam database...	0.49	0.35	0.70	44	73857	20	7	12	1	82
ASE_00021	RNaseP_bact_a links to Rfam database...	0.54	0.41	0.73	65	104107	28	4	20	4	95
ASE_00022	RNaseP_bact_b links to Rfam database...	0.74	0.62	0.89	77	82941	16	0	10	6	47
ASE_00028	RNaseP_bact_b links to Rfam database...	0.76	0.62	0.93	78	84582	10	1	5	4	48
ASE_00035	RNaseP_bact_a links to Rfam database...	0.67	0.54	0.83	64	70423	19	2	11	6	54
ASE_00037	RNaseP_bact_a links to Rfam database...	0.72	0.62	0.83	68	59258	18	0	14	4	42
ASE_00038	RNaseP_bact_a links to Rfam database...	0.65	0.51	0.81	52	53564	12	1	11	0	49
ASE_00040	RNaseP_bact_a links to Rfam database...	0.69	0.55	0.86	73	78918	13	1	11	1	60
ASE_00041	RNaseP_bact_a links to Rfam database...	0.73	0.65	0.82	70	57545	15	0	15	0	38
ASE_00042	RNaseP_bact_a links to Rfam database...	0.52	0.39	0.70	57	90018	25	1	24	0	88
ASE_00044	RNaseP_bact_a links to Rfam database...	0.74	0.63	0.88	66	54540	9	1	8	0	39
ASE_00045	RNaseP_bact_b links to Rfam database...	0.73	0.69	0.77	55	47207	21	2	14	5	25
ASE_00064	RNaseP_bact_a links to Rfam database...	0.72	0.61	0.84	54	45387	13	0	10	3	35
ASE_00068	RNaseP_bact_a links to Rfam database...	0.73	0.55	0.96	47	37626	2	2	0	0	38
ASE_00074	RNaseP_bact_a links to Rfam database...	0.72	0.61	0.86	72	67812	14	0	12	2	47
ASE_00075	RNaseP_bact_a links to Rfam database...	0.55	0.40	0.76	65	108725	27	3	18	6	97
ASE_00077	RNaseP_bact_a links to Rfam database...	0.79	0.65	0.97	56	45092	5	1	1	3	30
ASE_00078	RNaseP_bact_a links to Rfam database...	0.77	0.70	0.84	58	43002	11	3	8	0	25
ASE_00080	RNaseP_bact_a links to Rfam database...	0.43	0.32	0.59	39	71565	27	3	24	0	84
ASE_00081	RNaseP_bact_a links to Rfam database...	0.72	0.56	0.93	54	49712	4	0	4	0	43
ASE_00082	RNaseP_bact_a links to Rfam database...	0.49	0.34	0.72	39	70446	21	1	14	6	77
ASE_00083	RNaseP_bact_a links to Rfam database...	0.77	0.62	0.96	68	62410	4	2	1	1	42
ASE_00084	RNaseP_bact_a links to Rfam database...	0.61	0.51	0.75	50	53561	17	4	13	0	49
ASE_00087	RNaseP_bact_a links to Rfam database...	0.64	0.44	0.93	64	88341	5	0	5	0	80
ASE_00090	RNaseP_bact_a links to Rfam database...	0.72	0.55	0.93	56	55551	4	0	4	0	45
ASE_00092	RNaseP_bact_a links to Rfam database...	0.73	0.58	0.93	65	63476	6	1	4	1	48
ASE_00099	RNaseP_bact_a links to Rfam database...	0.76	0.64	0.90	77	64534	11	0	9	2	43
ASE_00104	RNaseP_bact_a links to Rfam database...	0.66	0.54	0.81	64	64182	15	2	13	0	55
ASE_00105	RNaseP_bact_a links to Rfam database...	0.62	0.49	0.78	54	64192	18	2	13	3	57
ASE_00107	RNaseP_bact_a links to Rfam database...	0.72	0.58	0.90	74	73071	8	0	8	0	53
ASE_00114	RNaseP_bact_b links to Rfam database...	0.68	0.65	0.70	50	45380	31	0	21	10	27
ASE_00115	RNaseP_bact_a links to Rfam database...	0.73	0.60	0.88	61	54546	12	1	7	4	40
ASE_00118	RNaseP_bact_a links to Rfam database...	0.58	0.44	0.78	45	60668	14	4	9	1	57
ASE_00119	RNaseP_bact_a links to Rfam database...	0.57	0.41	0.80	44	62780	11	3	8	0	64
ASE_00123	RNaseP_bact_a links to Rfam database...	0.67	0.54	0.84	46	38448	9	2	7	0	39
ASE_00125	RNaseP_bact_a links to Rfam database...	0.70	0.55	0.89	48	39286	6	0	6	0	40
ASE_00126	RNaseP_bact_a links to Rfam database...	0.81	0.71	0.94	58	40408	4	0	4	0	24
ASE_00128	RNaseP_bact_a links to Rfam database...	0.74	0.60	0.91	60	53235	6	0	6	0	40
ASE_00129	RNaseP_bact_a links to Rfam database...	0.65	0.49	0.86	54	62772	9	3	6	0	57
ASE_00131	RNaseP_bact_a links to Rfam database...	0.62	0.48	0.80	41	39289	10	3	7	0	44
ASE_00134	RNaseP_bact_a links to Rfam database...	0.64	0.52	0.80	49	50342	12	3	9	0	46
ASE_00135	RNaseP_bact_a links to Rfam database...	0.49	0.38	0.63	41	63125	24	1	23	0	68
ASE_00136	RNaseP_bact_a links to Rfam database...	0.80	0.67	0.95	62	48140	3	2	1	0	30
ASE_00137	RNaseP_bact_a links to Rfam database...	0.62	0.45	0.85	44	48464	9	2	6	1	54
ASE_00138	RNaseP_bact_a links to Rfam database...	0.71	0.62	0.81	50	40408	15	0	12	3	31
ASE_00140	RNaseP_bact_a links to Rfam database...	0.69	0.51	0.93	64	70807	5	1	4	0	61
ASE_00142	RNaseP_bact_a links to Rfam database...	0.70	0.58	0.84	71	67076	16	0	14	2	51
ASE_00146	RNaseP_bact_a links to Rfam database...	0.78	0.67	0.91	83	70785	11	1	7	3	41
ASE_00153	RNaseP_nuc links to Rfam database...	0.41	0.34	0.50	25	57580	28	1	24	3	48
ASE_00161	RNaseP_bact_b links to Rfam database...	0.83	0.80	0.86	70	53547	17	0	11	6	17
ASE_00163	RNaseP_bact_a links to Rfam database...	0.64	0.52	0.79	48	53240	13	4	9	0	45
ASE_00165	RNaseP_bact_a links to Rfam database...	0.66	0.48	0.91	48	52922	6	1	4	1	53
ASE_00170	RNaseP_bact_a links to Rfam database...	0.62	0.53	0.74	49	48762	18	4	13	1	44
ASE_00171	RNaseP_bact_a links to Rfam database...	0.60	0.46	0.80	43	48462	11	4	7	0	51
ASE_00172	RNaseP_bact_a links to Rfam database...	0.80	0.67	0.95	71	58921	7	3	1	3	35
ASE_00174	RNaseP_bact_a links to Rfam database...	0.56	0.41	0.75	45	61015	15	2	13	0	64
ASE_00175	RNaseP_bact_a links to Rfam database...	0.61	0.50	0.74	54	59958	19	3	16	0	53
ASE_00179	RNaseP_bact_a links to Rfam database...	0.78	0.68	0.90	57	44190	6	2	4	0	27
ASE_00180	RNaseP_bact_a links to Rfam database...	0.66	0.53	0.82	53	51295	12	4	8	0	47
ASE_00181	RNaseP_bact_a links to Rfam database...	0.58	0.42	0.80	45	57574	12	3	8	1	61
ASE_00182	RNaseP_bact_a links to Rfam database...	0.44	0.29	0.68	39	84198	18	4	14	0	97
ASE_00183	RNaseP_bact_a links to Rfam database...	0.55	0.39	0.79	44	61369	12	4	8	0	69
ASE_00184	RNaseP_bact_a links to Rfam database...	0.65	0.50	0.84	51	54554	10	3	7	0	51
ASE_00185	RNaseP_bact_a links to Rfam database...	0.70	0.51	0.97	65	73469	2	1	1	0	63
ASE_00186	RNaseP_bact_a links to Rfam database...	0.62	0.49	0.79	65	78921	19	2	15	2	67
ASE_00190	RNaseP_bact_b links to Rfam database...	0.64	0.52	0.78	47	45391	17	0	13	4	43
ASE_00197	RNaseP_bact_a links to Rfam database...	0.50	0.37	0.69	53	89176	24	0	24	0	92
ASE_00198	RNaseP_bact_a links to Rfam database...	0.68	0.54	0.86	55	52586	9	1	8	0	47
ASE_00203	RNaseP_bact_a links to Rfam database...	0.65	0.51	0.83	49	46606	10	2	8	0	47
ASE_00212	RNaseP_bact_a links to Rfam database...	0.64	0.49	0.84	73	93874	17	0	14	3	75
ASE_00214	RNaseP_bact_a links to Rfam database...	0.69	0.51	0.93	53	56223	5	0	4	1	50
ASE_00215	RNaseP_bact_a links to Rfam database...	0.69	0.49	0.96	49	48465	2	2	0	0	50
ASE_00216	RNaseP_bact_a links to Rfam database...	0.77	0.61	0.96	50	39288	3	0	2	1	32
ASE_00217	RNaseP_bact_a links to Rfam database...	0.78	0.67	0.91	60	40404	7	2	4	1	30
ASE_00221	RNaseP_bact_a links to Rfam database...	0.78	0.68	0.89	80	64530	10	1	9	0	37
ASE_00228	RNaseP_bact_a links to Rfam database...	0.70	0.62	0.79	53	46904	15	5	9	1	33
ASE_00229	RNaseP_bact_a links to Rfam database...	0.74	0.61	0.90	53	42427	8	0	6	2	34
ASE_00231	RNaseP_bact_a links to Rfam database...	0.59	0.46	0.76	44	47837	18	0	14	4	52
ASE_00232	RNaseP_bact_a links to Rfam database...	0.78	0.65	0.93	55	38444	4	0	4	0	29
ASE_00234	RNaseP_bact_a links to Rfam database...	0.50	0.32	0.77	41	75413	12	3	9	0	88
ASE_00238	RNaseP_bact_a links to Rfam database...	0.59	0.46	0.78	52	64194	16	0	15	1	62
ASE_00241	RNaseP_bact_a links to Rfam database...	0.70	0.60	0.83	52	43893	14	3	8	3	35
ASE_00242	RNaseP_bact_a links to Rfam database...	0.73	0.62	0.87	69	60996	11	1	9	1	43
ASE_00248	RNaseP_bact_a links to Rfam database...	0.73	0.62	0.87	71	62399	11	3	8	0	43
ASE_00254	RNaseP_bact_a links to Rfam database...	0.79	0.68	0.92	56	36795	6	0	5	1	26
ASE_00255	RNaseP_bact_a links to Rfam database...	0.49	0.40	0.60	52	74605	35	1	33	1	78
ASE_00257	RNaseP_bact_a links to Rfam database...	0.62	0.52	0.75	50	50973	17	3	14	0	47
ASE_00263	RNaseP_bact_a links to Rfam database...	0.61	0.44	0.85	53	70438	9	1	8	0	67
ASE_00267	RNaseP_bact_a links to Rfam database...	0.82	0.75	0.89	66	45076	9	3	5	1	22
ASE_00270	RNaseP_bact_a links to Rfam database...	0.30	0.18	0.50	23	72344	25	1	22	2	105
ASE_00274	RNaseP_bact_a links to Rfam database...	0.50	0.36	0.69	37	55557	17	5	12	0	66
ASE_00277	RNaseP_bact_a links to Rfam database...	0.48	0.37	0.62	34	48150	21	4	17	0	57
ASE_00279	RNaseP_bact_a links to Rfam database...	0.74	0.60	0.91	61	53234	6	0	6	0	40
ASE_00280	RNaseP_bact_a links to Rfam database...	0.68	0.55	0.84	54	51939	10	1	9	0	44
ASE_00281	RNaseP_bact_a links to Rfam database...	0.87	0.76	0.99	67	44483	1	0	1	0	21
ASE_00282	RNaseP_bact_a links to Rfam database...	0.59	0.43	0.82	54	77749	12	3	9	0	73
ASE_00283	RNaseP_bact_a links to Rfam database...	0.65	0.51	0.83	55	61710	11	2	9	0	52
ASE_00284	RNaseP_bact_a links to Rfam database...	0.70	0.53	0.92	57	58249	5	0	5	0	51
ASE_00285	RNaseP_bact_a links to Rfam database...	0.63	0.48	0.84	58	68937	11	2	9	0	64
ASE_00286	RNaseP_bact_a links to Rfam database...	0.79	0.66	0.94	61	46600	4	0	4	0	31
ASE_00287	RNaseP_bact_a links to Rfam database...	0.63	0.48	0.84	49	54888	9	1	8	0	54
ASE_00292	RNaseP_bact_a links to Rfam database...	0.69	0.56	0.85	77	81719	14	3	11	0	61
ASE_00294	RNaseP_bact_a links to Rfam database...	0.64	0.47	0.87	81	114388	14	2	10	2	90
ASE_00296	RNaseP_bact_a links to Rfam database...	0.62	0.47	0.81	68	91722	16	3	13	0	77
ASE_00297	RNaseP_bact_a links to Rfam database...	0.69	0.52	0.93	51	52920	7	0	4	3	47
ASE_00298	RNaseP_bact_a links to Rfam database...	0.65	0.51	0.83	58	67458	12	5	7	0	55
ASE_00305	RNaseP_bact_b links to Rfam database...	0.70	0.62	0.79	53	54548	24	1	13	10	32
ASE_00318	RNaseP_bact_b links to Rfam database...	0.74	0.60	0.91	71	80122	17	2	5	10	47
ASE_00321	RNaseP_bact_b links to Rfam database...	0.81	0.74	0.88	65	54541	20	1	8	11	23
ASE_00328	RNaseP_bact_b links to Rfam database...	0.71	0.64	0.77	72	72678	27	5	16	6	40
ASE_00332	RNaseP_bact_a links to Rfam database...	0.76	0.63	0.92	87	81715	8	0	8	0	51
ASE_00335	RNaseP_bact_b links to Rfam database...	0.70	0.62	0.80	72	75376	24	5	13	6	44
ASE_00340	RNaseP_bact_a links to Rfam database...	0.65	0.55	0.76	47	45994	15	7	8	0	38
ASE_00342	RNaseP_bact_a links to Rfam database...	0.72	0.61	0.86	70	62400	14	3	8	3	45
ASE_00353	RNaseP_bact_a links to Rfam database...	0.65	0.50	0.84	53	57907	10	1	9	0	54
ASE_00361	RNaseP_bact_a links to Rfam database...	0.69	0.51	0.93	65	75396	5	1	4	0	62
ASE_00362	RNaseP_bact_a links to Rfam database...	0.75	0.63	0.90	57	48142	6	2	4	0	34
ASE_00363	RNaseP_bact_a links to Rfam database...	0.72	0.63	0.83	59	51289	12	2	10	0	35
ASE_00364	RNaseP_bact_a links to Rfam database...	0.55	0.39	0.77	41	54232	12	1	11	0	64
ASE_00366	RNaseP_bact_a links to Rfam database...	0.51	0.37	0.71	36	58602	16	1	14	1	62
ASE_00367	RNaseP_bact_a links to Rfam database...	0.78	0.65	0.93	56	43011	4	0	4	0	30
ASE_00369	RNaseP_bact_a links to Rfam database...	0.69	0.57	0.84	61	55872	12	3	9	0	46
ASE_00370	RNaseP_bact_a links to Rfam database...	0.66	0.51	0.84	43	41854	8	0	8	0	41
ASE_00372	RNaseP_bact_a links to Rfam database...	0.74	0.62	0.87	62	51932	9	0	9	0	38
ASE_00374	RNaseP_bact_a links to Rfam database...	0.74	0.59	0.93	52	44794	4	0	4	0	36
ASE_00376	RNaseP_bact_a links to Rfam database...	0.73	0.58	0.92	61	56887	6	0	5	1	44
ASE_00377	RNaseP_bact_a links to Rfam database...	0.73	0.59	0.90	63	57560	7	0	7	0	44
ASE_00379	RNaseP_bact_a links to Rfam database...	0.75	0.62	0.90	55	45995	6	2	4	0	34
ASE_00382	RNaseP_bact_a links to Rfam database...	0.70	0.60	0.82	50	41844	11	2	9	0	34
ASE_00383	RNaseP_bact_a links to Rfam database...	0.77	0.66	0.90	69	54538	11	3	5	3	36
ASE_00384	RNaseP_bact_a links to Rfam database...	0.74	0.59	0.93	54	48458	4	0	4	0	38
ASE_00386	RNaseP_bact_a links to Rfam database...	0.75	0.64	0.90	61	50335	7	2	5	0	35
ASE_00387	RNaseP_bact_a links to Rfam database...	0.74	0.61	0.90	63	55875	7	0	7	0	41
ASE_00388	RNaseP_bact_a links to Rfam database...	0.73	0.61	0.87	54	45691	10	1	7	2	35
ASE_00390	RNaseP_bact_a links to Rfam database...	0.73	0.60	0.88	51	42137	7	0	7	0	34
ASE_00393	RNaseP_bact_a links to Rfam database...	0.67	0.58	0.78	54	47826	16	2	13	1	39
ASE_00394	RNaseP_bact_a links to Rfam database...	0.68	0.56	0.83	52	46908	11	3	8	0	41
ASE_00395	RNaseP_bact_a links to Rfam database...	0.87	0.79	0.97	66	41548	2	0	2	0	18
ASE_00396	RNaseP_bact_a links to Rfam database...	0.74	0.63	0.88	52	41557	7	0	7	0	31
ASE_00397	RNaseP_bact_a links to Rfam database...	0.78	0.64	0.96	67	54545	5	3	0	2	38
ASE_00398	RNaseP_bact_a links to Rfam database...	0.63	0.48	0.82	50	55884	12	3	8	1	54
ASE_00400	RNaseP_bact_a links to Rfam database...	0.78	0.66	0.92	70	57894	11	3	3	5	36
ASE_00401	RNaseP_bact_a links to Rfam database...	0.54	0.37	0.81	46	76971	11	3	8	0	80
ASE_00402	RNaseP_bact_a links to Rfam database...	0.78	0.66	0.93	56	42426	4	0	4	0	29
ASE_00403	RNaseP_bact_a links to Rfam database...	0.69	0.51	0.93	55	55886	4	0	4	0	52
ASE_00404	RNaseP_bact_a links to Rfam database...	0.77	0.64	0.93	54	43013	5	1	3	1	31
ASE_00406	RNaseP_bact_a links to Rfam database...	0.69	0.56	0.84	53	48765	10	1	9	0	41
ASE_00411	RNaseP_bact_a links to Rfam database...	0.64	0.52	0.79	46	49397	12	7	5	0	43
ASE_00412	RNaseP_bact_a links to Rfam database...	0.61	0.49	0.76	51	58244	20	0	16	4	54
ASE_00413	RNaseP_bact_a links to Rfam database...	0.60	0.52	0.70	42	44491	21	4	14	3	39
ASE_00415	RNaseP_bact_a links to Rfam database...	0.55	0.40	0.76	41	54892	14	0	13	1	62
ASE_00416	RNaseP_bact_a links to Rfam database...	0.70	0.60	0.83	76	77329	16	2	14	0	51
ASE_00419	RNaseP_bact_a links to Rfam database...	0.56	0.40	0.79	41	54894	11	2	9	0	62
ASE_00422	RNaseP_bact_a links to Rfam database...	0.69	0.59	0.82	55	46904	13	0	12	1	39
ASE_00423	RNaseP_bact_a links to Rfam database...	0.70	0.61	0.80	67	56869	18	3	14	1	42
ASE_00427	RNaseP_nuc links to Rfam database...	0.69	0.65	0.73	30	40714	23	4	7	12	16
ASE_00428	RNaseP_bact_a links to Rfam database...	0.66	0.54	0.80	68	76551	17	1	16	0	57
ASE_00430	RNaseP_bact_a links to Rfam database...	0.69	0.57	0.83	55	46905	12	0	11	1	42
ASE_00437	RNaseP_bact_a links to Rfam database...	0.45	0.36	0.58	48	79318	35	2	33	0	87
ASE_00441	RNaseP_bact_a links to Rfam database...	0.55	0.38	0.80	43	64207	15	0	11	4	69
ASE_00448	RNaseP_bact_a links to Rfam database...	0.77	0.70	0.86	78	64170	13	1	12	0	34
ASE_00451	RNaseP_bact_a links to Rfam database...	0.70	0.56	0.86	70	70795	11	3	8	0	55
CRW_00548	5S_rRNA links to Rfam database...	0.89	0.79	1.00	30	7351	2	0	0	2	8
CRW_00552	5S_rRNA links to Rfam database...	0.82	0.67	1.00	26	7114	1	0	0	1	13
CRW_00555	5S_rRNA links to Rfam database...	0.77	0.60	1.00	24	7602	1	0	0	1	16
CRW_00567	5S_rRNA links to Rfam database...	0.84	0.70	1.00	28	7475	1	0	0	1	12
CRW_00570	5S_rRNA links to Rfam database...	0.90	0.86	0.94	32	6869	5	0	2	3	5
CRW_00573	5S_rRNA links to Rfam database...	0.82	0.68	1.00	27	7113	1	0	0	1	13
CRW_01484	5S_rRNA links to Rfam database...	0.82	0.67	1.00	26	7477	1	0	0	1	13
CRW_01485	5S_rRNA links to Rfam database...	0.89	0.79	1.00	31	7472	2	0	0	2	8
CRW_01487	5S_rRNA links to Rfam database...	0.81	0.68	0.97	28	7474	1	0	1	0	13
CRW_01489	5S_rRNA links to Rfam database...	0.80	0.64	1.00	25	7478	0	0	0	0	14
CRW_01491	5S_rRNA links to Rfam database...	0.79	0.63	1.00	27	8358	0	0	0	0	16
CRW_01492	5S_rRNA links to Rfam database...	0.74	0.60	0.93	25	7599	2	0	2	0	17
CRW_01494	5S_rRNA links to Rfam database...	0.74	0.55	1.00	22	7118	0	0	0	0	18
CRW_01497	5S_rRNA links to Rfam database...	0.72	0.55	0.96	22	7117	1	0	1	0	18
CRW_01498	5S_rRNA links to Rfam database...	0.79	0.63	1.00	27	8101	0	0	0	0	16
CRW_01499	5S_rRNA links to Rfam database...	0.73	0.56	0.96	23	7977	1	0	1	0	18
CRW_01500	5S_rRNA links to Rfam database...	0.79	0.63	1.00	24	7726	0	0	0	0	14
CRW_01501	5S_rRNA links to Rfam database...	0.73	0.58	0.93	26	8487	2	0	2	0	19
CRW_01508	5S_rRNA links to Rfam database...	0.83	0.69	1.00	29	7972	0	0	0	0	13
CRW_01532	5S_rRNA links to Rfam database...	0.94	0.89	1.00	33	7107	2	0	0	2	4
CRW_01533	5S_rRNA links to Rfam database...	0.82	0.70	0.96	26	7113	2	0	1	1	11
CRW_01534	5S_rRNA links to Rfam database...	0.86	0.78	0.94	29	7109	5	0	2	3	8
CRW_01535	5S_rRNA links to Rfam database...	0.89	0.81	0.97	30	7109	4	0	1	3	7
CRW_01536	5S_rRNA links to Rfam database...	0.94	0.89	1.00	33	6988	1	0	0	1	4
CRW_01537	5S_rRNA links to Rfam database...	0.90	0.86	0.94	32	7106	3	0	2	1	5
CRW_01539	5S_rRNA links to Rfam database...	0.92	0.89	0.94	33	7105	5	0	2	3	4
CRW_01540	5S_rRNA links to Rfam database...	0.92	0.89	0.94	33	7105	5	0	2	3	4
CRW_01541	5S_rRNA links to Rfam database...	0.74	0.59	0.92	22	7116	5	0	2	3	15
CRW_01542	5S_rRNA links to Rfam database...	0.90	0.86	0.94	32	7106	4	0	2	2	5
CRW_01544	5S_rRNA links to Rfam database...	0.87	0.81	0.94	30	7108	3	0	2	1	7
CRW_01548	5S_rRNA links to Rfam database...	0.90	0.86	0.94	32	6987	5	0	2	3	5
CRW_01555	5S_rRNA links to Rfam database...	0.92	0.89	0.94	33	9010	2	0	2	0	4
CRW_01556	5S_rRNA links to Rfam database...	0.66	0.54	0.80	20	7115	7	0	5	2	17
CRW_01557	5S_rRNA links to Rfam database...	0.89	0.84	0.94	31	7107	5	0	2	3	6
CRW_01559	5S_rRNA links to Rfam database...	0.94	0.89	1.00	33	7227	0	0	0	0	4
CRW_01562	5S_rRNA links to Rfam database...	0.82	0.70	0.96	26	7113	2	0	1	1	11
CRW_01563	5S_rRNA links to Rfam database...	0.73	0.70	0.76	26	6869	10	0	8	2	11
CRW_01566	5S_rRNA links to Rfam database...	0.66	0.43	1.00	16	7124	0	0	0	0	21
CRW_01568	5S_rRNA links to Rfam database...	0.89	0.84	0.94	31	7107	3	0	2	1	6
CRW_01569	5S_rRNA links to Rfam database...	0.87	0.81	0.94	30	7108	2	0	2	0	7
CRW_01570	5S_rRNA links to Rfam database...	0.91	0.84	1.00	31	7109	1	0	0	1	6
CRW_01572	5S_rRNA links to Rfam database...	0.82	0.78	0.85	29	6987	8	0	5	3	8
CRW_01573	5S_rRNA links to Rfam database...	0.89	0.84	0.94	31	7227	3	0	2	1	6
CRW_01578	5S_rRNA links to Rfam database...	0.90	0.86	0.94	32	7106	4	0	2	2	5
CRW_01580	5S_rRNA links to Rfam database...	0.90	0.86	0.94	32	7106	2	0	2	0	5
CRW_01581	5S_rRNA links to Rfam database...	0.90	0.81	1.00	30	7110	1	0	0	1	7
CRW_01583	5S_rRNA links to Rfam database...	0.92	0.89	0.94	33	7105	5	0	2	3	4
CRW_01584	5S_rRNA links to Rfam database...	0.87	0.81	0.94	30	7108	3	0	2	1	7
CRW_01590	5S_rRNA links to Rfam database...	0.82	0.73	0.93	27	7111	5	0	2	3	10
CRW_01593	5S_rRNA links to Rfam database...	0.89	0.84	0.94	31	7107	3	0	2	1	6
CRW_01595	5S_rRNA links to Rfam database...	0.89	0.84	0.94	31	8482	5	0	2	3	6
CRW_01599	5S_rRNA links to Rfam database...	0.87	0.81	0.94	30	7108	5	0	2	3	7
CRW_01603	5S_rRNA links to Rfam database...	0.74	0.59	0.92	22	7116	5	0	2	3	15
CRW_01605	5S_rRNA links to Rfam database...	0.90	0.86	0.94	32	7106	4	0	2	2	5
CRW_01606	5S_rRNA links to Rfam database...	0.85	0.76	0.97	28	7111	4	0	1	3	9
CRW_01608	5S_rRNA links to Rfam database...	0.90	0.86	0.94	32	8351	3	0	2	1	5
CRW_01616	5S_rRNA links to Rfam database...	0.94	0.89	1.00	33	7107	1	0	0	1	4
CRW_01617	5S_rRNA links to Rfam database...	0.90	0.86	0.94	32	7106	4	0	2	2	5
CRW_01620	5S_rRNA links to Rfam database...	0.97	0.95	1.00	35	6986	3	0	0	3	2
CRW_01621	5S_rRNA links to Rfam database...	0.74	0.59	0.92	22	7116	4	0	2	2	15
CRW_01623	5S_rRNA links to Rfam database...	0.89	0.84	0.94	31	7107	3	0	2	1	6
CRW_01625	5S_rRNA links to Rfam database...	0.68	0.59	0.79	22	7112	9	0	6	3	15
PDB_00012	mir-TAR links to Rfam database...	1.00	1.00	1.00	7	399	2	0	0	2	0
PDB_00070	tRNA links to Rfam database...	0.93	0.88	1.00	21	2829	0	0	0	0	3
PDB_00213	Gammaretro_CES links to Rfam database...	0.77	0.63	0.93	26	5022	2	0	2	0	15
PDB_00229	tRNA links to Rfam database...	0.93	0.87	1.00	20	2755	0	0	0	0	3
PDB_00327	tRNA links to Rfam database...	0.96	0.91	1.00	21	3060	0	0	0	0	2
PDB_00362	tRNA links to Rfam database...	0.98	0.95	1.00	21	2829	0	0	0	0	1
PDB_00402	tRNA links to Rfam database...	0.96	0.91	1.00	21	2754	0	0	0	0	2
PDB_00431	tRNA links to Rfam database...	0.95	0.90	1.00	18	2193	0	0	0	0	2
PDB_00474	tRNA links to Rfam database...	0.96	0.91	1.00	21	2680	0	0	0	0	2
PDB_00553	mir-TAR links to Rfam database...	0.53	0.36	0.80	4	460	1	0	1	0	7
PDB_00571	tRNA links to Rfam database...	0.87	0.80	0.95	20	3300	1	1	0	0	5
PDB_00667	tRNA links to Rfam database...	0.98	0.95	1.00	21	2829	0	0	0	0	1
PDB_00741	Entero_5_CRE links to Rfam database...	0.72	0.53	1.00	9	694	0	0	0	0	8
PDB_00810	s2m links to Rfam database...	0.63	0.53	0.75	9	1069	4	0	3	1	8
PDB_00828	Purine links to Rfam database...	0.84	0.70	1.00	19	2466	0	0	0	0	8
PDB_00829	Purine links to Rfam database...	0.86	0.75	1.00	18	2260	0	0	0	0	6
PDB_00876	HIV_FE links to Rfam database...	0.45	0.40	0.53	8	975	7	0	7	0	12
PDB_01002	tRNA links to Rfam database...	0.93	0.86	1.00	18	2757	2	0	0	2	3
PDB_01020	Purine links to Rfam database...	0.86	0.74	1.00	17	2261	1	0	0	1	6
PDB_01050	UnaL2 links to Rfam database...	0.68	0.46	1.00	6	624	2	0	0	2	7
PDB_01053	tRNA links to Rfam database...	1.00	1.00	1.00	16	1362	0	0	0	0	0
PDB_01073	SAM links to Rfam database...	0.80	0.65	1.00	22	4349	1	0	0	1	12
PDB_01114	TPP links to Rfam database...	0.86	0.74	1.00	20	2830	0	0	0	0	7
PDB_01152	HIV_FS2 links to Rfam database...	0.76	0.64	0.90	9	551	1	0	1	0	5
PDB_01236	ykoK links to Rfam database...	0.87	0.78	0.98	42	11585	4	0	1	3	12
RFA_00389	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	2	0	0	2	1
RFA_00390	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	3	0	0	3	1
RFA_00391	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	2	0	0	2	1
RFA_00396	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	2	0	0	2	1
RFA_00402	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	2	0	0	2	1
RFA_00409	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	2	0	0	2	1
RFA_00416	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1471	2	0	0	2	1
RFA_00433	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00434	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	2	0	0	2	1
RFA_00436	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	1	0	0	1	1
RFA_00440	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1471	3	0	0	3	1
RFA_00442	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	2	0	0	2	1
RFA_00444	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1526	2	0	0	2	1
RFA_00583	Y_RNA links to Rfam database...	0.97	0.93	1.00	14	4936	0	0	0	0	1
RFA_00584	Y_RNA links to Rfam database...	0.93	0.87	1.00	13	2913	1	0	0	1	2
RFA_00585	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4836	0	0	0	0	0
RFA_00586	Y_RNA links to Rfam database...	0.97	0.93	1.00	14	3902	1	0	0	1	1
RFA_00587	Y_RNA links to Rfam database...	0.97	0.93	1.00	14	4837	0	0	0	0	1
RFA_00588	Y_RNA links to Rfam database...	0.97	0.93	1.00	14	4546	0	0	0	0	1
RFA_00589	Y_RNA links to Rfam database...	0.97	0.93	1.00	14	4357	3	0	0	3	1
RFA_00594	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	2760	1	0	0	1	0
RFA_00596	Y_RNA links to Rfam database...	0.93	0.87	1.00	13	5982	4	0	0	4	2
RFA_00599	Telomerase-vert links to Rfam database...	0.75	0.65	0.87	72	101392	18	0	11	7	39
RFA_00601	Telomerase-vert links to Rfam database...	0.75	0.66	0.85	75	99147	17	0	13	4	39
RFA_00602	Telomerase-vert links to Rfam database...	0.65	0.54	0.78	63	101394	21	0	18	3	53
RFA_00658	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	1128	0	0	0	0	14
RFA_00664	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	990	0	0	0	0	14
RFA_00667	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	990	0	0	0	0	14
RFA_00668	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	990	0	0	0	0	14
RFA_00672	Hammerhead_1 links to Rfam database...	0.55	0.31	1.00	4	899	0	0	0	0	9
RFA_00673	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	1128	0	0	0	0	14
RFA_00674	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	1128	0	0	0	0	14
RFA_00675	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	990	0	0	0	0	14
RFA_00677	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	990	0	0	0	0	14
RFA_00678	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	946	0	0	0	0	14
RFA_00680	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	1128	0	0	0	0	14
RFA_00704	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	990	0	0	0	0	14
RFA_00707	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	1035	0	0	0	0	14
RFA_00715	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	946	0	0	0	0	14
RFA_00717	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	903	0	0	0	0	14
RFA_00730	s2m links to Rfam database...	0.75	0.75	0.75	9	891	4	0	3	1	3
RFA_00731	s2m links to Rfam database...	0.91	0.83	1.00	10	893	0	0	0	0	2
RFA_00733	s2m links to Rfam database...	1.00	1.00	1.00	12	891	0	0	0	0	0
RFA_00734	s2m links to Rfam database...	0.75	0.75	0.75	9	891	4	0	3	1	3
RFA_00736	s2m links to Rfam database...	1.00	1.00	1.00	12	891	0	0	0	0	0
RFA_00737	s2m links to Rfam database...	0.75	0.75	0.75	9	891	4	0	3	1	3
RFA_00745	s2m links to Rfam database...	0.75	0.75	0.75	9	934	4	0	3	1	3
RFA_00749	s2m links to Rfam database...	0.75	0.75	0.75	9	891	4	0	3	1	3
RFA_00758	s2m links to Rfam database...	0.75	0.75	0.75	9	891	5	0	3	2	3
RFA_00762	s2m links to Rfam database...	1.00	1.00	1.00	12	891	0	0	0	0	0
RFA_00763	s2m links to Rfam database...	1.00	1.00	1.00	12	891	1	0	0	1	0
RFA_00764	s2m links to Rfam database...	1.00	1.00	1.00	12	891	0	0	0	0	0
RFA_00765	s2m links to Rfam database...	0.75	0.75	0.75	9	891	4	0	3	1	3
RFA_00786	Gammaretro_CES links to Rfam database...	0.68	0.63	0.74	20	5023	7	1	6	0	12
RFA_00791	Gammaretro_CES links to Rfam database...	0.68	0.63	0.74	20	5124	7	1	6	0	12
RFA_00792	Gammaretro_CES links to Rfam database...	0.68	0.63	0.74	20	5023	7	1	6	0	12
RFA_00801	Gammaretro_CES links to Rfam database...	0.68	0.63	0.74	20	5023	7	1	6	0	12
SPR_00007	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00009	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	1	0	0	1	0
SPR_00010	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00012	tRNA links to Rfam database...	0.97	0.95	1.00	19	2831	1	0	0	1	1
SPR_00013	tRNA links to Rfam database...	0.97	0.95	1.00	19	2831	1	0	0	1	1
SPR_00016	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00017	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00025	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	1	0	0	1	0
SPR_00026	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00027	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00036	tRNA links to Rfam database...	0.89	0.80	1.00	16	2759	1	0	0	1	4
SPR_00045	tRNA links to Rfam database...	0.88	0.86	0.90	19	2829	2	0	2	0	3
SPR_00064	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00065	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00066	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00068	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00070	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00074	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	1	0	0	1	0
SPR_00079	tRNA links to Rfam database...	0.89	0.79	1.00	15	2470	0	0	0	0	4
SPR_00086	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00087	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	1	0	0	1	0
SPR_00088	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	1	0	0	1	0
SPR_00089	tRNA links to Rfam database...	0.97	0.95	1.00	19	2831	1	0	0	1	1
SPR_00090	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	1	0	0	1	0
SPR_00091	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	1	0	0	1	0
SPR_00095	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00111	tRNA links to Rfam database...	1.00	1.00	1.00	21	2680	0	0	0	0	0
SPR_00112	tRNA links to Rfam database...	1.00	1.00	1.00	21	2680	0	0	0	0	0
SPR_00115	tRNA links to Rfam database...	1.00	1.00	1.00	21	2680	0	0	0	0	0
SPR_00117	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00139	tRNA links to Rfam database...	0.95	0.90	1.00	19	2907	0	0	0	0	2
SPR_00153	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00155	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00156	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00176	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	1	0	0	1	0
SPR_00177	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00178	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00191	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00200	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00224	tRNA links to Rfam database...	1.00	1.00	1.00	20	3721	0	0	0	0	0
SPR_00271	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00273	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00276	tRNA links to Rfam database...	0.98	0.95	1.00	20	2906	0	0	0	0	1
SPR_00277	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00294	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00295	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	0	0	0	0	0
SPR_00314	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00315	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00317	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	1	0	0	1	0
SPR_00318	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00321	tRNA links to Rfam database...	1.00	1.00	1.00	21	2982	0	0	0	0	0
SPR_00333	tRNA links to Rfam database...	0.98	0.95	1.00	20	2755	0	0	0	0	1
SPR_00352	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00353	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00357	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00358	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	1	0	0	1	0
SPR_00370	tRNA links to Rfam database...	0.95	0.90	1.00	19	2756	0	0	0	0	2
SPR_00386	tRNA links to Rfam database...	1.00	1.00	1.00	20	4166	0	0	0	0	0
SPR_00414	tRNA links to Rfam database...	1.00	1.00	1.00	21	3549	4	0	0	4	0
SPR_00415	tRNA links to Rfam database...	1.00	1.00	1.00	21	3549	4	0	0	4	0
SPR_00417	tRNA links to Rfam database...	0.95	0.91	1.00	20	3550	4	0	0	4	2
SPR_00418	tRNA links to Rfam database...	0.95	0.91	1.00	20	3550	4	0	0	4	2
SPR_00434	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00435	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00436	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00437	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	0	0	0	0	0
SPR_00438	tRNA links to Rfam database...	0.98	0.95	1.00	20	2755	0	0	0	0	1
SPR_00452	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00455	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00456	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00476	tRNA links to Rfam database...	0.98	0.95	1.00	20	2755	0	0	0	0	1
SPR_00479	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00482	tRNA links to Rfam database...	1.00	1.00	1.00	21	2680	0	0	0	0	0
SPR_00483	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00487	tRNA links to Rfam database...	0.88	0.86	0.90	19	2680	2	0	2	0	3
SPR_00493	tRNA links to Rfam database...	0.93	0.86	1.00	19	2756	0	0	0	0	3
SPR_00496	tRNA links to Rfam database...	0.98	0.95	1.00	20	2755	0	0	0	0	1
SPR_00497	tRNA links to Rfam database...	0.98	0.95	1.00	20	2755	0	0	0	0	1
SPR_00502	tRNA links to Rfam database...	0.98	0.95	1.00	20	2906	0	0	0	0	1
SPR_00504	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	0	0	0	0	0
SPR_00505	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00506	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00509	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00512	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00513	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00518	tRNA links to Rfam database...	0.97	0.95	1.00	19	2907	0	0	0	0	1
SPR_00548	tRNA links to Rfam database...	0.98	0.95	1.00	20	3383	0	0	0	0	1
SPR_00557	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00561	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00590	tRNA links to Rfam database...	1.00	1.00	1.00	20	2983	0	0	0	0	0
SPR_00593	tRNA links to Rfam database...	1.00	1.00	1.00	19	2756	2	0	0	2	0
SPR_00595	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	0	0	0	0	0
SPR_00598	tRNA links to Rfam database...	1.00	1.00	1.00	21	2982	0	0	0	0	0
SPR_00610	tRNA links to Rfam database...	0.90	0.81	1.00	17	2539	0	0	0	0	4
SPR_00620	tRNA links to Rfam database...	0.98	0.95	1.00	20	2983	0	0	0	0	1
SPR_00721	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00722	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	1	0	0	1	0
SPR_00758	tRNA links to Rfam database...	1.00	1.00	1.00	21	2982	0	0	0	0	0
SPR_00760	tRNA links to Rfam database...	1.00	1.00	1.00	21	3549	0	0	0	0	0
SPR_00777	tRNA links to Rfam database...	1.00	1.00	1.00	20	2608	1	0	0	1	0
SPR_00867	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00868	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00943	tRNA links to Rfam database...	1.00	1.00	1.00	20	2536	0	0	0	0	0
SPR_00957	tRNA links to Rfam database...	1.00	1.00	1.00	21	2982	0	0	0	0	0
SPR_01040	tRNA links to Rfam database...	0.98	0.95	1.00	20	2755	0	0	0	0	1
SPR_01088	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_01095	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_01106	tRNA links to Rfam database...	1.00	1.00	1.00	21	2535	0	0	0	0	0
SPR_01117	tRNA links to Rfam database...	0.98	0.95	1.00	20	2983	0	0	0	0	1
SPR_01157	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	0	0	0	0	0
SRP_00006	Metazoa_SRP links to Rfam database...	0.93	0.87	1.00	88	45665	3	0	0	3	13
SRP_00008	Bacteria_small_SRP links to Rfam database...	0.77	0.60	1.00	15	2911	0	0	0	0	10
SRP_00011	Plant_SRP links to Rfam database...	0.74	0.65	0.83	68	46278	17	0	14	3	36
SRP_00015	Plant_SRP links to Rfam database...	0.78	0.72	0.86	71	46277	20	0	12	8	28
SRP_00020	Bacteria_small_SRP links to Rfam database...	0.72	0.52	1.00	17	5548	0	0	0	0	16
SRP_00024	Bacteria_large_SRP links to Rfam database...	0.56	0.34	0.91	30	37642	3	0	3	0	57
SRP_00026	Bacteria_large_SRP links to Rfam database...	0.51	0.33	0.78	29	36819	9	4	4	1	59
SRP_00027	Bacteria_large_SRP links to Rfam database...	0.60	0.39	0.92	34	37091	3	0	3	0	53
SRP_00030	Bacteria_large_SRP links to Rfam database...	0.52	0.34	0.79	30	36818	8	4	4	0	58
SRP_00031	Bacteria_large_SRP links to Rfam database...	0.62	0.44	0.89	39	36271	6	0	5	1	50
SRP_00037	Bacteria_large_SRP links to Rfam database...	0.55	0.30	1.00	26	36559	0	0	0	0	61
SRP_00038	Bacteria_small_SRP links to Rfam database...	0.46	0.21	1.00	7	5043	0	0	0	0	26
SRP_00042	Bacteria_small_SRP links to Rfam database...	0.75	0.64	0.89	16	3987	3	1	1	1	9
SRP_00044	Bacteria_small_SRP links to Rfam database...	0.47	0.22	1.00	7	6098	0	0	0	0	25
SRP_00046	Bacteria_small_SRP links to Rfam database...	0.47	0.22	1.00	7	4746	0	0	0	0	25
SRP_00050	Metazoa_SRP links to Rfam database...	0.93	0.88	0.99	87	44762	4	0	1	3	12
SRP_00051	Bacteria_small_SRP links to Rfam database...	0.48	0.23	1.00	7	5453	0	0	0	0	23
SRP_00054	Bacteria_small_SRP links to Rfam database...	0.47	0.22	1.00	7	5558	0	0	0	0	25
SRP_00057	Bacteria_small_SRP links to Rfam database...	0.45	0.20	1.00	7	6321	0	0	0	0	28
SRP_00058	Bacteria_small_SRP links to Rfam database...	0.66	0.44	1.00	15	5763	0	0	0	0	19
SRP_00066	Metazoa_SRP links to Rfam database...	0.77	0.71	0.85	71	45367	17	2	11	4	29
SRP_00072	Bacteria_small_SRP links to Rfam database...	0.49	0.24	1.00	7	6321	0	0	0	0	22
SRP_00074	Bacteria_small_SRP links to Rfam database...	0.49	0.24	1.00	7	6548	0	0	0	0	22
SRP_00075	Bacteria_small_SRP links to Rfam database...	0.45	0.21	1.00	7	5558	0	0	0	0	27
SRP_00077	Bacteria_small_SRP links to Rfam database...	0.43	0.19	1.00	7	6663	0	0	0	0	30
SRP_00081	Bacteria_small_SRP links to Rfam database...	0.47	0.23	1.00	7	5558	0	0	0	0	24
SRP_00084	Bacteria_small_SRP links to Rfam database...	0.45	0.21	1.00	7	5453	0	0	0	0	27
SRP_00086	Metazoa_SRP links to Rfam database...	0.80	0.74	0.86	74	44167	14	5	7	2	26
SRP_00088	Bacteria_large_SRP links to Rfam database...	0.57	0.37	0.87	33	34153	5	0	5	0	56
SRP_00089	Bacteria_large_SRP links to Rfam database...	0.50	0.31	0.80	28	35743	7	3	4	0	62
SRP_00090	Bacteria_large_SRP links to Rfam database...	0.55	0.32	0.94	29	35480	2	0	2	0	61
SRP_00094	Bacteria_small_SRP links to Rfam database...	0.84	0.71	1.00	17	4078	0	0	0	0	7
SRP_00095	Bacteria_small_SRP links to Rfam database...	0.62	0.48	0.80	12	3990	3	2	1	0	13
SRP_00098	Bacteria_small_SRP links to Rfam database...	0.62	0.43	0.89	16	6423	2	1	1	0	21
SRP_00102	Metazoa_SRP links to Rfam database...	0.77	0.68	0.87	69	44472	13	1	9	3	32
SRP_00103	Metazoa_SRP links to Rfam database...	0.76	0.66	0.87	67	45374	12	1	9	2	35
SRP_00105	Bacteria_small_SRP links to Rfam database...	0.45	0.21	1.00	7	5558	0	0	0	0	27
SRP_00107	Bacteria_small_SRP links to Rfam database...	0.56	0.32	1.00	6	3649	0	0	0	0	13
SRP_00121	Bacteria_small_SRP links to Rfam database...	0.53	0.28	1.00	7	4271	0	0	0	0	18
SRP_00128	Bacteria_small_SRP links to Rfam database...	0.44	0.19	1.00	7	6779	0	0	0	0	29
SRP_00132	Bacteria_small_SRP links to Rfam database...	0.49	0.24	1.00	7	4844	0	0	0	0	22
SRP_00134	Bacteria_large_SRP links to Rfam database...	0.67	0.66	0.68	19	5967	13	0	9	4	10
SRP_00141	Bacteria_small_SRP links to Rfam database...	0.38	0.15	1.00	6	6322	1	0	0	1	35
SRP_00152	Plant_SRP links to Rfam database...	0.73	0.64	0.84	66	45674	16	5	8	3	37
SRP_00161	Bacteria_small_SRP links to Rfam database...	0.56	0.32	1.00	7	2843	0	0	0	0	15
SRP_00162	Bacteria_small_SRP links to Rfam database...	0.55	0.30	1.00	7	2919	0	0	0	0	16
SRP_00163	Bacteria_small_SRP links to Rfam database...	0.52	0.27	1.00	7	3479	0	0	0	0	19
SRP_00164	Bacteria_small_SRP links to Rfam database...	0.41	0.17	1.00	6	6897	0	0	0	0	29
SRP_00170	Bacteria_small_SRP links to Rfam database...	0.71	0.60	0.83	15	4077	5	1	2	2	10
SRP_00171	Metazoa_SRP links to Rfam database...	0.65	0.65	0.66	57	45364	38	6	24	8	31
SRP_00173	Bacteria_large_SRP links to Rfam database...	0.55	0.36	0.86	32	38189	6	0	5	1	58
SRP_00174	Bacteria_large_SRP links to Rfam database...	0.55	0.30	1.00	26	38755	0	0	0	0	60
SRP_00178	Plant_SRP links to Rfam database...	0.76	0.60	0.97	61	45690	3	0	2	1	41
SRP_00179	Plant_SRP links to Rfam database...	0.74	0.58	0.94	61	45991	7	0	4	3	44
SRP_00181	Plant_SRP links to Rfam database...	0.66	0.50	0.88	51	45998	9	0	7	2	51
SRP_00182	Plant_SRP links to Rfam database...	0.89	0.83	0.94	84	45967	7	0	5	2	17
SRP_00184	Plant_SRP links to Rfam database...	0.82	0.74	0.90	74	45974	11	0	8	3	26
SRP_00188	Plant_SRP links to Rfam database...	0.78	0.71	0.86	56	31060	10	0	9	1	23
SRP_00194	Bacteria_small_SRP links to Rfam database...	0.53	0.29	1.00	6	3234	0	0	0	0	15
SRP_00200	Bacteria_small_SRP links to Rfam database...	0.41	0.17	1.00	6	6897	0	0	0	0	30
SRP_00209	Bacteria_small_SRP links to Rfam database...	0.70	0.56	0.88	15	4639	3	1	1	1	12
SRP_00213	Bacteria_small_SRP links to Rfam database...	0.69	0.52	0.93	13	4172	1	0	1	0	12
SRP_00215	Bacteria_small_SRP links to Rfam database...	0.53	0.28	1.00	7	3233	0	0	0	0	18
SRP_00227	Bacteria_small_SRP links to Rfam database...	0.86	0.81	0.93	25	5124	5	1	1	3	6
SRP_00228	Metazoa_SRP links to Rfam database...	0.80	0.72	0.89	68	45375	16	0	8	8	27
SRP_00231	Bacteria_small_SRP links to Rfam database...	0.59	0.35	1.00	12	5448	0	0	0	0	22
SRP_00233	Bacteria_small_SRP links to Rfam database...	0.46	0.21	1.00	7	5144	0	0	0	0	26
SRP_00234	Bacteria_large_SRP links to Rfam database...	0.54	0.33	0.90	28	36284	4	0	3	1	58
SRP_00243	Bacteria_small_SRP links to Rfam database...	0.47	0.23	1.00	7	5144	0	0	0	0	24
SRP_00244	Bacteria_small_SRP links to Rfam database...	0.39	0.15	1.00	6	6897	1	0	0	1	33
SRP_00250	Bacteria_small_SRP links to Rfam database...	0.44	0.19	1.00	7	6779	0	0	0	0	29
SRP_00251	Bacteria_small_SRP links to Rfam database...	0.41	0.17	1.00	6	7015	1	0	0	1	30
SRP_00266	Bacteria_small_SRP links to Rfam database...	0.49	0.24	1.00	7	4649	0	0	0	0	22
SRP_00268	Bacteria_small_SRP links to Rfam database...	0.73	0.63	0.85	17	4166	3	1	2	0	10
SRP_00269	Bacteria_small_SRP links to Rfam database...	0.46	0.21	1.00	7	5043	0	0	0	0	26
SRP_00270	Bacteria_small_SRP links to Rfam database...	0.44	0.19	1.00	6	4650	1	0	0	1	25
SRP_00271	Bacteria_small_SRP links to Rfam database...	0.54	0.29	1.00	7	3233	0	0	0	0	17
SRP_00273	Bacteria_small_SRP links to Rfam database...	0.84	0.70	1.00	28	6758	0	0	0	0	12
SRP_00274	Bacteria_small_SRP links to Rfam database...	0.54	0.29	1.00	11	6892	0	0	0	0	27
SRP_00295	Bacteria_small_SRP links to Rfam database...	0.51	0.26	1.00	10	6893	1	0	0	1	28
SRP_00303	Bacteria_small_SRP links to Rfam database...	0.43	0.19	1.00	6	6664	1	0	0	1	26
SRP_00308	Bacteria_large_SRP links to Rfam database...	0.48	0.32	0.74	28	36277	10	4	6	0	60
SRP_00310	Bacteria_small_SRP links to Rfam database...	0.55	0.30	1.00	7	2919	0	0	0	0	16
SRP_00312	Bacteria_small_SRP links to Rfam database...	0.77	0.67	0.90	18	4166	3	1	1	1	9
SRP_00315	Bacteria_small_SRP links to Rfam database...	0.74	0.65	0.83	15	2908	3	0	3	0	8
SRP_00317	Metazoa_SRP links to Rfam database...	0.91	0.85	0.98	83	45065	7	0	2	5	15
SRP_00318	Bacteria_small_SRP links to Rfam database...	0.55	0.30	1.00	7	2996	0	0	0	0	16
SRP_00325	Bacteria_small_SRP links to Rfam database...	0.46	0.21	1.00	7	4364	0	0	0	0	26
SRP_00326	Bacteria_small_SRP links to Rfam database...	0.44	0.19	1.00	6	5044	1	0	0	1	25
SRP_00333	Bacteria_small_SRP links to Rfam database...	0.45	0.21	1.00	7	5144	0	0	0	0	27
SRP_00335	Bacteria_large_SRP links to Rfam database...	0.53	0.28	1.00	11	35234	0	0	0	0	28
SRP_00337	Bacteria_large_SRP links to Rfam database...	0.70	0.53	0.94	48	35460	4	0	3	1	43
SRP_00338	Bacteria_small_SRP links to Rfam database...	0.44	0.19	1.00	7	5453	0	0	0	0	29
SRP_00341	Bacteria_small_SRP links to Rfam database...	0.47	0.23	1.00	7	4746	0	0	0	0	24
SRP_00342	Bacteria_small_SRP links to Rfam database...	0.49	0.24	1.00	6	3999	0	0	0	0	19
SRP_00347	Metazoa_SRP links to Rfam database...	0.79	0.71	0.87	68	46587	18	1	9	8	28
SRP_00350	Bacteria_small_SRP links to Rfam database...	0.73	0.63	0.85	17	3896	3	1	2	0	10
SRP_00356	Bacteria_small_SRP links to Rfam database...	0.48	0.23	1.00	7	5043	0	0	0	0	23
SRP_00357	Bacteria_small_SRP links to Rfam database...	0.44	0.19	1.00	7	5349	0	0	0	0	29
SRP_00358	Bacteria_small_SRP links to Rfam database...	0.41	0.17	1.00	6	6322	0	0	0	0	29
SRP_00367	Bacteria_small_SRP links to Rfam database...	0.41	0.17	1.00	6	6780	0	0	0	0	29
SRP_00368	Metazoa_SRP links to Rfam database...	0.80	0.73	0.88	72	43874	14	1	9	4	26
SRP_00369	Bacteria_small_SRP links to Rfam database...	0.41	0.17	1.00	6	5772	0	0	0	0	29
SRP_00383	Bacteria_small_SRP links to Rfam database...	0.54	0.29	1.00	7	3233	0	0	0	0	17
TMR_00017	tmRNA links to Rfam database...	0.68	0.54	0.85	55	67096	14	0	10	4	47
TMR_00018	tmRNA links to Rfam database...	0.62	0.53	0.72	49	64552	23	7	12	4	43
TMR_00038	tmRNA links to Rfam database...	0.65	0.53	0.81	58	71181	14	4	10	0	52
TMR_00042	tmRNA links to Rfam database...	0.68	0.53	0.87	52	62775	9	1	7	1	46
TMR_00046	tmRNA links to Rfam database...	0.56	0.49	0.64	47	62761	28	4	23	1	49
TMR_00048	tmRNA links to Rfam database...	0.64	0.52	0.80	49	64919	13	5	7	1	46
TMR_00080	tmRNA links to Rfam database...	0.57	0.50	0.64	48	70425	33	8	19	6	48
TMR_00082	tmRNA links to Rfam database...	0.59	0.50	0.69	48	67826	28	11	11	6	48
TMR_00123	tmRNA links to Rfam database...	0.70	0.55	0.89	56	66367	12	1	6	5	45
TMR_00137	tmRNA links to Rfam database...	0.56	0.48	0.66	43	61010	24	11	11	2	46
TMR_00142	tmRNA links to Rfam database...	0.63	0.52	0.77	53	70807	22	4	12	6	49
TMR_00207	tmRNA links to Rfam database...	0.66	0.54	0.81	56	72321	19	7	6	6	47
TMR_00257	tmRNA links to Rfam database...	0.75	0.63	0.89	62	67091	15	4	4	7	36
TMR_00271	tmRNA links to Rfam database...	0.48	0.37	0.63	34	64207	26	5	15	6	57
TMR_00332	tmRNA links to Rfam database...	0.64	0.52	0.78	51	67096	19	1	13	5	48
TMR_00366	tmRNA links to Rfam database...	0.55	0.48	0.62	48	67819	29	8	21	0	52
TMR_00378	tmRNA links to Rfam database...	0.49	0.41	0.59	40	67828	29	8	20	1	57
TMR_00399	tmRNA links to Rfam database...	0.63	0.56	0.70	53	64904	27	6	17	4	41
TMR_00404	tmRNA links to Rfam database...	0.56	0.47	0.68	43	67465	20	3	17	0	49
TMR_00427	tmRNA links to Rfam database...	0.50	0.36	0.69	35	67477	16	7	9	0	62
TMR_00443	tmRNA links to Rfam database...	0.73	0.63	0.86	65	67085	15	6	5	4	39
TMR_00451	tmRNA links to Rfam database...	0.57	0.51	0.65	45	63477	30	10	14	6	44
TMR_00458	tmRNA links to Rfam database...	0.54	0.46	0.64	43	63479	28	8	16	4	50
TMR_00469	tmRNA links to Rfam database...	0.70	0.60	0.81	60	64546	14	7	7	0	40
TMR_00472	tmRNA links to Rfam database...	0.65	0.56	0.75	54	64548	19	8	10	1	43
TMR_00519	tmRNA links to Rfam database...	0.57	0.48	0.67	46	63121	25	7	16	2	49
TMR_00520	tmRNA links to Rfam database...	0.53	0.43	0.65	43	63124	27	8	15	4	56
TMR_00522	tmRNA links to Rfam database...	0.52	0.42	0.64	41	63126	27	6	17	4	56
TMR_00528	tmRNA links to Rfam database...	0.54	0.47	0.62	46	63116	34	9	19	6	51
TMR_00540	tmRNA links to Rfam database...	0.66	0.54	0.81	56	73467	17	5	8	4	48
TMR_00568	tmRNA links to Rfam database...	0.73	0.67	0.80	66	60644	22	3	13	6	33
TMR_00571	tmRNA links to Rfam database...	0.75	0.69	0.83	68	60644	20	3	11	6	31
TMR_00580	tmRNA links to Rfam database...	0.74	0.65	0.83	65	60648	19	1	12	6	35
TMR_00584	tmRNA links to Rfam database...	0.75	0.68	0.83	66	60995	17	2	12	3	31
TMR_00586	tmRNA links to Rfam database...	0.69	0.64	0.76	62	60993	26	8	12	6	35
TMR_00616	tmRNA links to Rfam database...	0.64	0.55	0.76	54	67090	17	7	10	0	45
TMR_00699	tmRNA links to Rfam database...	0.68	0.54	0.85	55	67096	15	1	9	5	47
TMR_00702	tmRNA links to Rfam database...	0.54	0.43	0.68	43	67098	24	2	18	4	57
TMR_00703	tmRNA links to Rfam database...	0.67	0.54	0.83	53	67464	15	1	10	4	46

^top

Performance of RNAwolf - scored lower in this pairwise comparison

1. Total counts & total scores for RNAwolf

Total Base Pair Counts
Total TP	14080
Total TN	15436714
Total FP	23980
Total FP CONTRA	2980
Total FP INCONS	17443
Total FP COMP	3557
Total FN	19190

Total Scores
MCC	0.414
Average MCC ± 95% Confidence Intervals	0.487 ± 0.021
Sensitivity	0.423
Positive Predictive Value	0.408
Nr of predictions	565

^top

2. Individual counts for RNAwolf [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00004	RNaseP_bact_a links to Rfam database...	0.51	0.51	0.51	49	47799	61	8	39	14	48
ASE_00005	RNaseP_bact_a links to Rfam database...	0.46	0.46	0.47	54	57854	68	12	50	6	63
ASE_00006	RNaseP_bact_a links to Rfam database...	0.32	0.33	0.30	31	47484	83	10	61	12	62
ASE_00007	RNaseP_bact_a links to Rfam database...	0.30	0.30	0.31	33	59577	81	11	64	6	77
ASE_00012	RNaseP_bact_a links to Rfam database...	0.54	0.54	0.54	67	73797	68	5	51	12	56
ASE_00018	RNaseP_bact_a links to Rfam database...	0.53	0.54	0.53	72	80465	72	4	60	8	62
ASE_00020	RNaseP_bact_a links to Rfam database...	0.63	0.62	0.64	78	73799	56	6	37	13	48
ASE_00021	RNaseP_bact_a links to Rfam database...	0.45	0.44	0.46	70	104045	94	7	74	13	90
ASE_00022	RNaseP_bact_b links to Rfam database...	0.45	0.45	0.44	56	82901	79	9	62	8	68
ASE_00028	RNaseP_bact_b links to Rfam database...	0.46	0.47	0.45	59	84536	90	9	62	19	67
ASE_00035	RNaseP_bact_a links to Rfam database...	0.22	0.23	0.22	27	70375	102	22	76	4	91
ASE_00037	RNaseP_bact_a links to Rfam database...	0.36	0.35	0.39	38	59242	67	8	52	7	72
ASE_00038	RNaseP_bact_a links to Rfam database...	0.41	0.41	0.41	41	53529	66	7	51	8	60
ASE_00040	RNaseP_bact_a links to Rfam database...	0.31	0.32	0.30	43	78860	110	16	84	10	90
ASE_00041	RNaseP_bact_a links to Rfam database...	0.37	0.36	0.39	39	57530	71	7	54	10	69
ASE_00042	RNaseP_bact_a links to Rfam database...	0.31	0.31	0.31	45	89957	109	9	89	11	100
ASE_00044	RNaseP_bact_a links to Rfam database...	0.48	0.48	0.48	50	54511	71	5	49	17	55
ASE_00045	RNaseP_bact_b links to Rfam database...	0.35	0.35	0.35	28	47197	69	6	47	16	52
ASE_00064	RNaseP_bact_a links to Rfam database...	0.19	0.19	0.19	17	45361	82	13	60	9	72
ASE_00068	RNaseP_bact_a links to Rfam database...	0.38	0.38	0.38	32	37591	57	8	44	5	53
ASE_00074	RNaseP_bact_a links to Rfam database...	0.36	0.36	0.37	43	67779	81	9	65	7	76
ASE_00075	RNaseP_bact_a links to Rfam database...	0.59	0.57	0.60	93	108656	77	7	55	15	69
ASE_00077	RNaseP_bact_a links to Rfam database...	0.36	0.37	0.35	32	45059	70	15	44	11	54
ASE_00078	RNaseP_bact_a links to Rfam database...	0.28	0.29	0.27	24	42983	71	8	56	7	59
ASE_00080	RNaseP_bact_a links to Rfam database...	0.36	0.37	0.36	45	71507	88	5	74	9	78
ASE_00081	RNaseP_bact_a links to Rfam database...	0.21	0.22	0.21	21	49668	87	9	72	6	76
ASE_00082	RNaseP_bact_a links to Rfam database...	0.44	0.46	0.43	53	70377	86	8	62	16	63
ASE_00083	RNaseP_bact_a links to Rfam database...	0.29	0.29	0.28	32	62368	94	11	70	13	78
ASE_00084	RNaseP_bact_a links to Rfam database...	0.59	0.61	0.57	60	53523	55	7	38	10	39
ASE_00087	RNaseP_bact_a links to Rfam database...	0.29	0.28	0.31	41	88276	102	8	85	9	103
ASE_00090	RNaseP_bact_a links to Rfam database...	0.32	0.33	0.31	33	55504	91	4	70	17	68
ASE_00092	RNaseP_bact_a links to Rfam database...	0.51	0.52	0.50	59	63428	75	11	48	16	54
ASE_00099	RNaseP_bact_a links to Rfam database...	0.56	0.55	0.56	66	64503	67	3	48	16	54
ASE_00104	RNaseP_bact_a links to Rfam database...	0.40	0.39	0.41	46	64148	80	2	65	13	73
ASE_00105	RNaseP_bact_a links to Rfam database...	0.57	0.57	0.57	63	64151	57	10	37	10	48
ASE_00107	RNaseP_bact_a links to Rfam database...	0.51	0.53	0.50	67	73020	74	9	57	8	60
ASE_00114	RNaseP_bact_b links to Rfam database...	0.32	0.35	0.30	27	45361	77	8	55	14	50
ASE_00115	RNaseP_bact_a links to Rfam database...	0.28	0.29	0.28	29	54512	85	6	68	11	72
ASE_00118	RNaseP_bact_a links to Rfam database...	0.28	0.30	0.26	31	60607	93	9	79	5	71
ASE_00119	RNaseP_bact_a links to Rfam database...	0.52	0.53	0.50	57	62722	71	10	46	15	51
ASE_00123	RNaseP_bact_a links to Rfam database...	0.46	0.48	0.45	41	38412	58	9	41	8	44
ASE_00125	RNaseP_bact_a links to Rfam database...	0.48	0.48	0.48	42	39252	53	12	34	7	46
ASE_00126	RNaseP_bact_a links to Rfam database...	0.43	0.44	0.42	36	40385	59	9	40	10	46
ASE_00128	RNaseP_bact_a links to Rfam database...	0.45	0.46	0.43	46	53195	70	6	54	10	54
ASE_00129	RNaseP_bact_a links to Rfam database...	0.34	0.35	0.33	39	62716	87	8	72	7	72
ASE_00131	RNaseP_bact_a links to Rfam database...	0.47	0.46	0.48	39	39258	54	10	33	11	46
ASE_00134	RNaseP_bact_a links to Rfam database...	0.49	0.49	0.48	47	50305	59	8	43	8	48
ASE_00135	RNaseP_bact_a links to Rfam database...	0.45	0.46	0.45	50	63078	74	12	50	12	59
ASE_00136	RNaseP_bact_a links to Rfam database...	0.27	0.27	0.27	25	48112	84	4	64	16	67
ASE_00137	RNaseP_bact_a links to Rfam database...	0.47	0.49	0.45	48	48410	75	3	55	17	50
ASE_00138	RNaseP_bact_a links to Rfam database...	0.54	0.56	0.54	45	40386	55	6	33	16	36
ASE_00140	RNaseP_bact_a links to Rfam database...	0.51	0.50	0.52	62	70757	67	7	50	10	63
ASE_00142	RNaseP_bact_a links to Rfam database...	0.28	0.28	0.27	34	67037	95	13	77	5	88
ASE_00146	RNaseP_bact_a links to Rfam database...	0.42	0.43	0.42	53	70749	81	12	62	7	71
ASE_00153	RNaseP_nuc links to Rfam database...	0.33	0.38	0.29	28	57534	96	15	53	28	45
ASE_00161	RNaseP_bact_b links to Rfam database...	0.34	0.37	0.31	32	53525	82	7	64	11	55
ASE_00163	RNaseP_bact_a links to Rfam database...	0.40	0.40	0.40	37	53208	82	0	56	26	56
ASE_00165	RNaseP_bact_a links to Rfam database...	0.17	0.18	0.17	18	52870	93	10	77	6	83
ASE_00170	RNaseP_bact_a links to Rfam database...	0.35	0.37	0.34	34	48728	76	9	57	10	59
ASE_00171	RNaseP_bact_a links to Rfam database...	0.57	0.60	0.55	56	48414	56	8	38	10	38
ASE_00172	RNaseP_bact_a links to Rfam database...	0.39	0.41	0.37	43	58880	80	9	64	7	63
ASE_00174	RNaseP_bact_a links to Rfam database...	0.48	0.50	0.47	55	60957	77	11	52	14	54
ASE_00175	RNaseP_bact_a links to Rfam database...	0.55	0.56	0.54	60	59919	62	10	42	10	47
ASE_00179	RNaseP_bact_a links to Rfam database...	0.26	0.27	0.25	23	44162	79	13	55	11	61
ASE_00180	RNaseP_bact_a links to Rfam database...	0.43	0.43	0.43	43	51259	71	7	51	13	57
ASE_00181	RNaseP_bact_a links to Rfam database...	0.39	0.41	0.37	43	57514	78	9	64	5	63
ASE_00182	RNaseP_bact_a links to Rfam database...	0.43	0.43	0.44	58	84123	86	5	69	12	78
ASE_00183	RNaseP_bact_a links to Rfam database...	0.45	0.44	0.46	50	61316	71	8	51	12	63
ASE_00184	RNaseP_bact_a links to Rfam database...	0.44	0.46	0.42	47	54504	69	11	53	5	55
ASE_00185	RNaseP_bact_a links to Rfam database...	0.49	0.49	0.49	63	73407	73	10	56	7	65
ASE_00186	RNaseP_bact_a links to Rfam database...	0.43	0.42	0.44	55	78877	87	9	62	16	77
ASE_00190	RNaseP_bact_b links to Rfam database...	0.56	0.54	0.57	49	45365	50	1	36	13	41
ASE_00197	RNaseP_bact_a links to Rfam database...	0.31	0.32	0.31	46	89104	114	10	93	11	99
ASE_00198	RNaseP_bact_a links to Rfam database...	0.28	0.27	0.28	28	52551	76	7	64	5	74
ASE_00203	RNaseP_bact_a links to Rfam database...	0.54	0.55	0.52	53	46564	58	10	38	10	43
ASE_00212	RNaseP_bact_a links to Rfam database...	0.29	0.29	0.28	43	93810	117	10	98	9	105
ASE_00214	RNaseP_bact_a links to Rfam database...	0.44	0.46	0.43	47	56171	76	2	60	14	56
ASE_00215	RNaseP_bact_a links to Rfam database...	0.28	0.28	0.29	28	48418	83	6	64	13	71
ASE_00216	RNaseP_bact_a links to Rfam database...	0.25	0.26	0.25	21	39255	67	8	56	3	61
ASE_00217	RNaseP_bact_a links to Rfam database...	0.34	0.33	0.35	30	40385	63	5	50	8	60
ASE_00221	RNaseP_bact_a links to Rfam database...	0.36	0.37	0.35	43	64496	87	11	70	6	74
ASE_00228	RNaseP_bact_a links to Rfam database...	0.36	0.40	0.32	34	46866	76	20	51	5	52
ASE_00229	RNaseP_bact_a links to Rfam database...	0.09	0.10	0.09	9	42384	101	6	87	8	78
ASE_00231	RNaseP_bact_a links to Rfam database...	0.56	0.58	0.53	56	47790	61	8	41	12	40
ASE_00232	RNaseP_bact_a links to Rfam database...	0.37	0.39	0.36	33	38411	70	4	55	11	51
ASE_00234	RNaseP_bact_a links to Rfam database...	0.54	0.54	0.55	70	75338	70	8	50	12	59
ASE_00238	RNaseP_bact_a links to Rfam database...	0.56	0.57	0.56	65	64144	64	10	42	12	49
ASE_00241	RNaseP_bact_a links to Rfam database...	0.62	0.64	0.59	56	43861	48	6	33	9	31
ASE_00242	RNaseP_bact_a links to Rfam database...	0.42	0.41	0.44	46	60970	62	14	45	3	66
ASE_00248	RNaseP_bact_a links to Rfam database...	0.32	0.31	0.33	35	62376	75	7	63	5	79
ASE_00254	RNaseP_bact_a links to Rfam database...	0.36	0.39	0.34	32	36761	69	10	53	6	50
ASE_00255	RNaseP_bact_a links to Rfam database...	0.46	0.47	0.45	61	74555	83	9	66	8	69
ASE_00257	RNaseP_bact_a links to Rfam database...	0.56	0.57	0.56	55	50941	56	9	35	12	42
ASE_00263	RNaseP_bact_a links to Rfam database...	0.15	0.16	0.15	19	70373	111	9	99	3	101
ASE_00267	RNaseP_bact_a links to Rfam database...	0.36	0.35	0.37	31	45067	62	8	44	10	57
ASE_00270	RNaseP_bact_a links to Rfam database...	0.51	0.50	0.52	64	72268	71	4	54	13	64
ASE_00274	RNaseP_bact_a links to Rfam database...	0.30	0.29	0.30	30	55512	78	13	56	9	73
ASE_00277	RNaseP_bact_a links to Rfam database...	0.28	0.30	0.26	27	48103	84	14	61	9	64
ASE_00279	RNaseP_bact_a links to Rfam database...	0.29	0.29	0.29	29	53202	80	4	66	10	72
ASE_00280	RNaseP_bact_a links to Rfam database...	0.20	0.20	0.20	20	51905	85	5	73	7	78
ASE_00281	RNaseP_bact_a links to Rfam database...	0.33	0.34	0.32	30	44458	73	11	52	10	58
ASE_00282	RNaseP_bact_a links to Rfam database...	0.23	0.24	0.24	30	77688	105	10	87	8	97
ASE_00283	RNaseP_bact_a links to Rfam database...	0.46	0.48	0.45	51	61662	74	12	51	11	56
ASE_00284	RNaseP_bact_a links to Rfam database...	0.08	0.08	0.08	9	58197	111	9	96	6	99
ASE_00285	RNaseP_bact_a links to Rfam database...	0.27	0.28	0.27	34	68878	102	9	85	8	88
ASE_00286	RNaseP_bact_a links to Rfam database...	0.57	0.54	0.61	50	46583	42	6	26	10	42
ASE_00287	RNaseP_bact_a links to Rfam database...	0.30	0.30	0.30	31	54842	81	6	67	8	72
ASE_00292	RNaseP_bact_a links to Rfam database...	0.38	0.38	0.39	52	81676	93	8	74	11	86
ASE_00294	RNaseP_bact_a links to Rfam database...	0.38	0.37	0.38	63	114317	107	9	92	6	108
ASE_00296	RNaseP_bact_a links to Rfam database...	0.31	0.30	0.32	44	91669	101	7	86	8	101
ASE_00297	RNaseP_bact_a links to Rfam database...	0.41	0.42	0.40	41	52873	73	4	57	12	57
ASE_00298	RNaseP_bact_a links to Rfam database...	0.29	0.29	0.30	33	67418	86	8	69	9	80
ASE_00305	RNaseP_bact_b links to Rfam database...	0.15	0.18	0.14	15	54504	107	20	76	11	70
ASE_00318	RNaseP_bact_b links to Rfam database...	0.41	0.42	0.40	49	80077	79	13	61	5	69
ASE_00321	RNaseP_bact_b links to Rfam database...	0.27	0.28	0.26	25	54520	80	13	57	10	63
ASE_00328	RNaseP_bact_b links to Rfam database...	0.51	0.49	0.53	55	72667	61	5	44	12	57
ASE_00332	RNaseP_bact_a links to Rfam database...	0.23	0.23	0.24	32	81674	118	5	99	14	106
ASE_00335	RNaseP_bact_b links to Rfam database...	0.58	0.57	0.58	66	75353	65	5	42	18	50
ASE_00340	RNaseP_bact_a links to Rfam database...	0.14	0.15	0.14	13	45963	87	8	72	7	72
ASE_00342	RNaseP_bact_a links to Rfam database...	0.50	0.50	0.50	58	62365	70	9	49	12	57
ASE_00353	RNaseP_bact_a links to Rfam database...	0.19	0.21	0.19	22	57852	106	9	87	10	85
ASE_00361	RNaseP_bact_a links to Rfam database...	0.36	0.37	0.35	47	75333	94	11	75	8	80
ASE_00362	RNaseP_bact_a links to Rfam database...	0.43	0.44	0.42	40	48110	66	10	45	11	51
ASE_00363	RNaseP_bact_a links to Rfam database...	0.29	0.31	0.27	29	51254	81	12	65	4	65
ASE_00364	RNaseP_bact_a links to Rfam database...	0.38	0.39	0.38	41	54177	77	9	58	10	64
ASE_00366	RNaseP_bact_a links to Rfam database...	0.19	0.20	0.17	20	58538	98	14	81	3	78
ASE_00367	RNaseP_bact_a links to Rfam database...	0.26	0.27	0.25	23	42978	79	8	62	9	63
ASE_00369	RNaseP_bact_a links to Rfam database...	0.34	0.36	0.33	38	55831	88	3	73	12	69
ASE_00370	RNaseP_bact_a links to Rfam database...	0.29	0.30	0.28	25	41816	75	7	57	11	59
ASE_00372	RNaseP_bact_a links to Rfam database...	0.21	0.22	0.21	22	51897	88	11	73	4	78
ASE_00374	RNaseP_bact_a links to Rfam database...	0.48	0.48	0.48	42	44763	54	2	43	9	46
ASE_00376	RNaseP_bact_a links to Rfam database...	0.45	0.46	0.44	48	56843	71	4	58	9	57
ASE_00377	RNaseP_bact_a links to Rfam database...	0.65	0.65	0.64	70	57521	52	8	31	13	37
ASE_00379	RNaseP_bact_a links to Rfam database...	0.25	0.26	0.25	23	45964	77	10	59	8	66
ASE_00382	RNaseP_bact_a links to Rfam database...	0.36	0.37	0.35	31	41816	69	12	46	11	53
ASE_00383	RNaseP_bact_a links to Rfam database...	0.44	0.43	0.45	45	54514	70	4	52	14	60
ASE_00384	RNaseP_bact_a links to Rfam database...	0.27	0.28	0.27	26	48418	84	10	62	12	66
ASE_00386	RNaseP_bact_a links to Rfam database...	0.39	0.40	0.38	38	50303	74	6	56	12	58
ASE_00387	RNaseP_bact_a links to Rfam database...	0.47	0.47	0.47	49	55841	66	8	47	11	55
ASE_00388	RNaseP_bact_a links to Rfam database...	0.29	0.30	0.28	27	45657	84	7	62	15	62
ASE_00390	RNaseP_bact_a links to Rfam database...	0.38	0.40	0.36	34	42100	71	9	52	10	51
ASE_00393	RNaseP_bact_a links to Rfam database...	0.27	0.28	0.27	26	47798	77	6	65	6	67
ASE_00394	RNaseP_bact_a links to Rfam database...	0.29	0.29	0.30	27	46881	73	6	57	10	66
ASE_00395	RNaseP_bact_a links to Rfam database...	0.54	0.56	0.52	47	41526	54	12	31	11	37
ASE_00396	RNaseP_bact_a links to Rfam database...	0.28	0.30	0.27	25	41522	78	11	58	9	58
ASE_00397	RNaseP_bact_a links to Rfam database...	0.43	0.43	0.42	45	54509	75	7	54	14	60
ASE_00398	RNaseP_bact_a links to Rfam database...	0.35	0.36	0.35	37	55839	79	6	63	10	67
ASE_00400	RNaseP_bact_a links to Rfam database...	0.63	0.64	0.62	68	57860	54	9	33	12	38
ASE_00401	RNaseP_bact_a links to Rfam database...	0.39	0.40	0.38	51	76893	91	12	72	7	75
ASE_00402	RNaseP_bact_a links to Rfam database...	0.44	0.45	0.44	38	42400	59	7	41	11	47
ASE_00403	RNaseP_bact_a links to Rfam database...	0.24	0.23	0.24	25	55841	94	8	71	15	82
ASE_00404	RNaseP_bact_a links to Rfam database...	0.25	0.28	0.23	24	42967	83	16	64	3	61
ASE_00406	RNaseP_bact_a links to Rfam database...	0.33	0.32	0.34	30	48740	71	5	53	13	64
ASE_00411	RNaseP_bact_a links to Rfam database...	0.39	0.40	0.39	36	49362	70	10	47	13	53
ASE_00412	RNaseP_bact_a links to Rfam database...	0.25	0.25	0.25	26	58206	86	11	68	7	79
ASE_00413	RNaseP_bact_a links to Rfam database...	0.60	0.62	0.59	50	44466	49	10	25	14	31
ASE_00415	RNaseP_bact_a links to Rfam database...	0.47	0.48	0.46	49	54839	67	5	53	9	54
ASE_00416	RNaseP_bact_a links to Rfam database...	0.32	0.32	0.32	41	77291	98	8	81	9	86
ASE_00419	RNaseP_bact_a links to Rfam database...	0.51	0.52	0.49	54	54836	66	9	47	10	49
ASE_00422	RNaseP_bact_a links to Rfam database...	0.24	0.24	0.24	23	46875	85	1	72	12	71
ASE_00423	RNaseP_bact_a links to Rfam database...	0.36	0.38	0.34	41	56833	84	9	70	5	68
ASE_00427	RNaseP_nuc links to Rfam database...	0.08	0.11	0.06	5	40673	91	35	42	14	41
ASE_00428	RNaseP_bact_a links to Rfam database...	0.29	0.30	0.29	37	76507	103	11	81	11	88
ASE_00430	RNaseP_bact_a links to Rfam database...	0.52	0.53	0.52	51	46873	56	1	46	9	46
ASE_00437	RNaseP_bact_a links to Rfam database...	0.30	0.30	0.31	41	79268	98	3	89	6	94
ASE_00441	RNaseP_bact_a links to Rfam database...	0.45	0.46	0.45	51	64147	73	3	60	10	61
ASE_00448	RNaseP_bact_a links to Rfam database...	0.45	0.43	0.48	48	64161	65	8	44	13	64
ASE_00451	RNaseP_bact_a links to Rfam database...	0.48	0.49	0.47	61	70746	77	7	62	8	64
CRW_00548	5S_rRNA links to Rfam database...	-0.01	0.00	0.00	0	7337	44	8	36	0	38
CRW_00552	5S_rRNA links to Rfam database...	0.25	0.26	0.24	10	7099	32	5	26	1	29
CRW_00555	5S_rRNA links to Rfam database...	0.38	0.38	0.38	15	7587	30	0	24	6	25
CRW_00567	5S_rRNA links to Rfam database...	0.23	0.25	0.23	10	7459	37	3	31	3	30
CRW_00570	5S_rRNA links to Rfam database...	0.81	0.81	0.81	30	6866	16	0	7	9	7
CRW_00573	5S_rRNA links to Rfam database...	0.35	0.35	0.35	14	7100	31	2	24	5	26
CRW_01484	5S_rRNA links to Rfam database...	0.08	0.08	0.09	3	7469	33	1	30	2	36
CRW_01485	5S_rRNA links to Rfam database...	0.49	0.49	0.50	19	7465	25	3	16	6	20
CRW_01487	5S_rRNA links to Rfam database...	0.17	0.17	0.17	7	7462	34	4	30	0	34
CRW_01489	5S_rRNA links to Rfam database...	0.77	0.72	0.82	28	7469	14	0	6	8	11
CRW_01491	5S_rRNA links to Rfam database...	0.18	0.19	0.19	8	8343	35	3	31	1	35
CRW_01492	5S_rRNA links to Rfam database...	0.76	0.74	0.78	31	7586	14	0	9	5	11
CRW_01494	5S_rRNA links to Rfam database...	0.67	0.65	0.70	26	7103	19	0	11	8	14
CRW_01497	5S_rRNA links to Rfam database...	0.74	0.70	0.78	28	7104	13	0	8	5	12
CRW_01498	5S_rRNA links to Rfam database...	0.89	0.88	0.90	38	8086	12	0	4	8	5
CRW_01499	5S_rRNA links to Rfam database...	0.56	0.54	0.59	22	7964	21	0	15	6	19
CRW_01500	5S_rRNA links to Rfam database...	0.15	0.16	0.14	6	7708	37	7	29	1	32
CRW_01501	5S_rRNA links to Rfam database...	0.64	0.62	0.67	28	8473	21	0	14	7	17
CRW_01508	5S_rRNA links to Rfam database...	0.52	0.52	0.52	22	7959	22	5	15	2	20
CRW_01532	5S_rRNA links to Rfam database...	0.21	0.22	0.22	8	7103	30	3	26	1	29
CRW_01533	5S_rRNA links to Rfam database...	0.23	0.24	0.23	9	7101	30	6	24	0	28
CRW_01534	5S_rRNA links to Rfam database...	0.23	0.24	0.23	9	7101	30	5	25	0	28
CRW_01535	5S_rRNA links to Rfam database...	0.14	0.16	0.13	6	7095	39	8	31	0	31
CRW_01536	5S_rRNA links to Rfam database...	0.22	0.22	0.23	8	6986	28	5	22	1	29
CRW_01537	5S_rRNA links to Rfam database...	0.58	0.54	0.63	20	7108	17	2	10	5	17
CRW_01539	5S_rRNA links to Rfam database...	0.46	0.46	0.46	17	7103	26	3	17	6	20
CRW_01540	5S_rRNA links to Rfam database...	0.23	0.24	0.23	9	7101	33	3	27	3	28
CRW_01541	5S_rRNA links to Rfam database...	0.77	0.76	0.78	28	7104	17	0	8	9	9
CRW_01542	5S_rRNA links to Rfam database...	0.20	0.22	0.19	8	7098	35	7	27	1	29
CRW_01544	5S_rRNA links to Rfam database...	0.64	0.59	0.69	22	7108	14	0	10	4	15
CRW_01548	5S_rRNA links to Rfam database...	0.92	0.92	0.92	34	6984	11	0	3	8	3
CRW_01555	5S_rRNA links to Rfam database...	0.35	0.32	0.38	12	9013	23	1	19	3	25
CRW_01556	5S_rRNA links to Rfam database...	0.78	0.78	0.78	29	7103	19	0	8	11	8
CRW_01557	5S_rRNA links to Rfam database...	0.20	0.22	0.20	8	7099	34	2	31	1	29
CRW_01559	5S_rRNA links to Rfam database...	0.32	0.32	0.32	12	7223	30	3	22	5	25
CRW_01562	5S_rRNA links to Rfam database...	0.69	0.65	0.73	24	7107	17	0	9	8	13
CRW_01563	5S_rRNA links to Rfam database...	0.62	0.59	0.65	22	6869	16	2	10	4	15
CRW_01566	5S_rRNA links to Rfam database...	0.66	0.62	0.70	23	7107	18	0	10	8	14
CRW_01568	5S_rRNA links to Rfam database...	0.42	0.43	0.41	16	7101	27	0	23	4	21
CRW_01569	5S_rRNA links to Rfam database...	0.21	0.22	0.21	8	7101	33	2	29	2	29
CRW_01570	5S_rRNA links to Rfam database...	0.33	0.32	0.34	12	7105	26	3	20	3	25
CRW_01572	5S_rRNA links to Rfam database...	0.51	0.43	0.62	16	6995	18	0	10	8	21
CRW_01573	5S_rRNA links to Rfam database...	0.25	0.27	0.24	10	7219	34	6	25	3	27
CRW_01578	5S_rRNA links to Rfam database...	0.93	0.92	0.94	34	7104	11	0	2	9	3
CRW_01580	5S_rRNA links to Rfam database...	0.22	0.22	0.22	8	7104	28	8	20	0	29
CRW_01581	5S_rRNA links to Rfam database...	0.13	0.14	0.14	5	7105	33	1	29	3	32
CRW_01583	5S_rRNA links to Rfam database...	0.00	0.00	0.00	0	7107	33	4	29	0	37
CRW_01584	5S_rRNA links to Rfam database...	0.86	0.86	0.86	32	7103	12	0	5	7	5
CRW_01590	5S_rRNA links to Rfam database...	-0.01	0.00	0.00	0	7100	41	5	35	1	37
CRW_01593	5S_rRNA links to Rfam database...	0.75	0.70	0.81	26	7108	14	0	6	8	11
CRW_01595	5S_rRNA links to Rfam database...	0.48	0.46	0.52	17	8482	23	0	16	7	20
CRW_01599	5S_rRNA links to Rfam database...	0.51	0.49	0.53	18	7106	21	1	15	5	19
CRW_01603	5S_rRNA links to Rfam database...	0.10	0.11	0.11	4	7102	34	8	26	0	33
CRW_01605	5S_rRNA links to Rfam database...	0.73	0.73	0.73	27	7103	17	0	10	7	10
CRW_01606	5S_rRNA links to Rfam database...	0.11	0.11	0.11	4	7104	33	5	27	1	33
CRW_01608	5S_rRNA links to Rfam database...	0.38	0.38	0.39	14	8349	27	1	21	5	23
CRW_01616	5S_rRNA links to Rfam database...	0.15	0.16	0.14	6	7097	37	8	29	0	31
CRW_01617	5S_rRNA links to Rfam database...	0.22	0.22	0.24	8	7106	28	6	20	2	29
CRW_01620	5S_rRNA links to Rfam database...	0.85	0.86	0.84	32	6983	13	0	6	7	5
CRW_01621	5S_rRNA links to Rfam database...	-0.01	0.00	0.00	0	7103	37	9	28	0	37
CRW_01623	5S_rRNA links to Rfam database...	0.39	0.38	0.41	14	7106	25	1	19	5	23
CRW_01625	5S_rRNA links to Rfam database...	0.31	0.30	0.32	11	7106	28	1	22	5	26
PDB_00012	mir-TAR links to Rfam database...	0.92	0.86	1.00	6	400	2	0	0	2	1
PDB_00070	tRNA links to Rfam database...	0.53	0.50	0.57	12	2829	12	0	9	3	12
PDB_00213	Gammaretro_CES links to Rfam database...	0.84	0.83	0.85	34	5010	7	0	6	1	7
PDB_00229	tRNA links to Rfam database...	0.48	0.48	0.50	11	2753	14	1	10	3	12
PDB_00327	tRNA links to Rfam database...	0.64	0.65	0.63	15	3057	11	0	9	2	8
PDB_00362	tRNA links to Rfam database...	1.00	1.00	1.00	22	2828	3	0	0	3	0
PDB_00402	tRNA links to Rfam database...	0.50	0.52	0.48	12	2750	17	0	13	4	11
PDB_00431	tRNA links to Rfam database...	0.51	0.50	0.53	10	2192	10	1	8	1	10
PDB_00474	tRNA links to Rfam database...	0.73	0.70	0.76	16	2680	8	0	5	3	7
PDB_00553	mir-TAR links to Rfam database...	0.90	0.82	1.00	9	456	0	0	0	0	2
PDB_00571	tRNA links to Rfam database...	0.89	0.84	0.95	21	3299	2	1	0	1	4
PDB_00667	tRNA links to Rfam database...	0.62	0.59	0.65	13	2830	9	4	3	2	9
PDB_00741	Entero_5_CRE links to Rfam database...	0.97	0.94	1.00	16	687	0	0	0	0	1
PDB_00810	s2m links to Rfam database...	0.55	0.47	0.67	8	1069	4	0	4	0	9
PDB_00828	Purine links to Rfam database...	0.85	0.81	0.88	22	2460	3	1	2	0	5
PDB_00829	Purine links to Rfam database...	0.78	0.75	0.82	18	2256	4	1	3	0	6
PDB_00876	HIV_FE links to Rfam database...	0.92	0.85	1.00	17	973	0	0	0	0	3
PDB_01002	tRNA links to Rfam database...	0.93	0.90	0.95	19	2755	6	0	1	5	2
PDB_01020	Purine links to Rfam database...	0.84	0.83	0.86	19	2256	5	1	2	2	4
PDB_01050	UnaL2 links to Rfam database...	0.80	0.77	0.83	10	618	2	0	2	0	3
PDB_01053	tRNA links to Rfam database...	1.00	1.00	1.00	16	1362	2	0	0	2	0
PDB_01073	SAM links to Rfam database...	0.17	0.18	0.17	6	4336	29	3	26	0	28
PDB_01114	TPP links to Rfam database...	0.74	0.67	0.82	18	2828	7	0	4	3	9
PDB_01152	HIV_FS2 links to Rfam database...	0.92	0.86	1.00	12	549	1	0	0	1	2
PDB_01236	ykoK links to Rfam database...	0.43	0.41	0.47	22	11581	27	1	24	2	32
RFA_00389	Hammerhead_3 links to Rfam database...	0.69	0.67	0.71	10	1417	7	1	3	3	5
RFA_00390	Hammerhead_3 links to Rfam database...	0.74	0.67	0.83	10	1419	5	0	2	3	5
RFA_00391	Hammerhead_3 links to Rfam database...	0.70	0.60	0.82	9	1420	4	1	1	2	6
RFA_00396	Hammerhead_3 links to Rfam database...	0.93	0.93	0.93	14	1416	4	0	1	3	1
RFA_00402	Hammerhead_3 links to Rfam database...	0.74	0.67	0.83	10	1419	4	0	2	2	5
RFA_00409	Hammerhead_3 links to Rfam database...	0.80	0.80	0.80	12	1416	9	0	3	6	3
RFA_00416	Hammerhead_3 links to Rfam database...	0.80	0.80	0.80	12	1470	8	0	3	5	3
RFA_00433	Hammerhead_3 links to Rfam database...	0.71	0.67	0.77	10	1418	7	2	1	4	5
RFA_00434	Hammerhead_3 links to Rfam database...	0.80	0.80	0.80	12	1416	8	0	3	5	3
RFA_00436	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	3	0	0	3	0
RFA_00440	Hammerhead_3 links to Rfam database...	0.69	0.67	0.71	10	1471	8	1	3	4	5
RFA_00442	Hammerhead_3 links to Rfam database...	0.87	0.87	0.87	13	1416	6	0	2	4	2
RFA_00444	Hammerhead_3 links to Rfam database...	0.24	0.27	0.24	4	1523	16	0	13	3	11
RFA_00583	Y_RNA links to Rfam database...	0.93	0.93	0.93	14	4935	21	0	1	20	1
RFA_00584	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	2911	13	0	0	13	0
RFA_00585	Y_RNA links to Rfam database...	0.90	0.87	0.93	13	4837	20	0	1	19	2
RFA_00586	Y_RNA links to Rfam database...	0.00	0.00	0.00	0	3899	22	5	12	5	15
RFA_00587	Y_RNA links to Rfam database...	0.93	0.87	1.00	13	4838	16	0	0	16	2
RFA_00588	Y_RNA links to Rfam database...	0.97	0.93	1.00	14	4546	16	0	0	16	1
RFA_00589	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4356	16	0	0	16	0
RFA_00594	Y_RNA links to Rfam database...	0.90	0.87	0.93	13	2761	6	0	1	5	2
RFA_00596	Y_RNA links to Rfam database...	0.00	0.00	0.00	0	5972	34	5	18	11	15
RFA_00599	Telomerase-vert links to Rfam database...	0.31	0.34	0.28	38	101339	111	33	65	13	73
RFA_00601	Telomerase-vert links to Rfam database...	0.37	0.42	0.33	48	99088	112	28	71	13	66
RFA_00602	Telomerase-vert links to Rfam database...	0.32	0.35	0.30	41	101337	128	16	81	31	75
RFA_00658	Hammerhead_1 links to Rfam database...	0.56	0.50	0.64	7	1117	8	0	4	4	7
RFA_00664	Hammerhead_1 links to Rfam database...	-0.02	0.00	0.00	0	974	16	0	16	0	14
RFA_00667	Hammerhead_1 links to Rfam database...	0.27	0.29	0.27	4	975	12	1	10	1	10
RFA_00668	Hammerhead_1 links to Rfam database...	0.44	0.43	0.46	6	977	7	0	7	0	8
RFA_00672	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	893	12	0	10	2	13
RFA_00673	Hammerhead_1 links to Rfam database...	0.36	0.36	0.38	5	1115	10	0	8	2	9
RFA_00674	Hammerhead_1 links to Rfam database...	0.74	0.71	0.77	10	1115	5	0	3	2	4
RFA_00675	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	979	13	0	11	2	14
RFA_00677	Hammerhead_1 links to Rfam database...	0.55	0.57	0.53	8	975	10	0	7	3	6
RFA_00678	Hammerhead_1 links to Rfam database...	0.30	0.29	0.33	4	934	10	0	8	2	10
RFA_00680	Hammerhead_1 links to Rfam database...	0.42	0.43	0.43	6	1114	12	0	8	4	8
RFA_00704	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	979	11	2	9	0	14
RFA_00707	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	1025	11	0	10	1	14
RFA_00715	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	936	10	0	10	0	14
RFA_00717	Hammerhead_1 links to Rfam database...	0.69	0.64	0.75	9	891	4	0	3	1	5
RFA_00730	s2m links to Rfam database...	0.48	0.42	0.56	5	894	6	0	4	2	7
RFA_00731	s2m links to Rfam database...	0.55	0.58	0.54	7	890	9	1	5	3	5
RFA_00733	s2m links to Rfam database...	0.23	0.25	0.23	3	890	12	1	9	2	9
RFA_00734	s2m links to Rfam database...	0.52	0.50	0.55	6	892	7	0	5	2	6
RFA_00736	s2m links to Rfam database...	0.48	0.42	0.56	5	894	7	0	4	3	7
RFA_00737	s2m links to Rfam database...	0.34	0.33	0.36	4	892	9	2	5	2	8
RFA_00745	s2m links to Rfam database...	0.66	0.67	0.67	8	934	8	0	4	4	4
RFA_00749	s2m links to Rfam database...	0.55	0.58	0.54	7	890	9	1	5	3	5
RFA_00758	s2m links to Rfam database...	0.45	0.42	0.50	5	893	5	0	5	0	7
RFA_00762	s2m links to Rfam database...	0.55	0.58	0.54	7	890	9	1	5	3	5
RFA_00763	s2m links to Rfam database...	0.58	0.58	0.58	7	891	8	0	5	3	5
RFA_00764	s2m links to Rfam database...	0.48	0.42	0.56	5	894	6	0	4	2	7
RFA_00765	s2m links to Rfam database...	0.36	0.42	0.33	5	888	13	0	10	3	7
RFA_00786	Gammaretro_CES links to Rfam database...	0.32	0.31	0.34	10	5021	22	2	17	3	22
RFA_00791	Gammaretro_CES links to Rfam database...	0.41	0.44	0.39	14	5115	23	5	17	1	18
RFA_00792	Gammaretro_CES links to Rfam database...	0.18	0.16	0.21	5	5026	20	2	17	1	27
RFA_00801	Gammaretro_CES links to Rfam database...	0.31	0.31	0.32	10	5019	22	2	19	1	22
SPR_00007	tRNA links to Rfam database...	0.54	0.57	0.52	12	2827	13	0	11	2	9
SPR_00009	tRNA links to Rfam database...	0.63	0.65	0.62	13	2829	10	0	8	2	7
SPR_00010	tRNA links to Rfam database...	0.71	0.76	0.67	16	2826	10	0	8	2	5
SPR_00012	tRNA links to Rfam database...	0.22	0.25	0.21	5	2826	20	3	16	1	15
SPR_00013	tRNA links to Rfam database...	0.22	0.25	0.21	5	2826	20	3	16	1	15
SPR_00016	tRNA links to Rfam database...	0.60	0.62	0.59	13	2828	11	0	9	2	8
SPR_00017	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	3	0	0	3	0
SPR_00025	tRNA links to Rfam database...	0.52	0.55	0.50	11	2904	13	2	9	2	9
SPR_00026	tRNA links to Rfam database...	0.68	0.71	0.65	15	2903	11	0	8	3	6
SPR_00027	tRNA links to Rfam database...	0.18	0.19	0.18	4	2904	20	2	16	2	17
SPR_00036	tRNA links to Rfam database...	0.39	0.35	0.44	7	2759	9	4	5	0	13
SPR_00045	tRNA links to Rfam database...	0.84	0.82	0.86	18	2829	5	0	3	2	4
SPR_00064	tRNA links to Rfam database...	0.53	0.57	0.50	12	2826	13	2	10	1	9
SPR_00065	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	3	0	0	3	0
SPR_00066	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	4	0	0	4	0
SPR_00068	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	4	0	0	4	0
SPR_00070	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	3	0	0	3	0
SPR_00074	tRNA links to Rfam database...	0.78	0.80	0.76	16	2829	9	2	3	4	4
SPR_00079	tRNA links to Rfam database...	0.61	0.58	0.65	11	2468	9	1	5	3	8
SPR_00086	tRNA links to Rfam database...	0.90	0.90	0.90	19	2829	4	0	2	2	2
SPR_00087	tRNA links to Rfam database...	0.46	0.45	0.47	9	2831	10	3	7	0	11
SPR_00088	tRNA links to Rfam database...	0.46	0.45	0.47	9	2831	10	3	7	0	11
SPR_00089	tRNA links to Rfam database...	0.46	0.45	0.47	9	2831	10	3	7	0	11
SPR_00090	tRNA links to Rfam database...	0.65	0.65	0.65	13	2830	8	3	4	1	7
SPR_00091	tRNA links to Rfam database...	0.46	0.45	0.47	9	2831	10	3	7	0	11
SPR_00095	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	2	0	0	2	0
SPR_00111	tRNA links to Rfam database...	0.70	0.67	0.74	14	2682	6	0	5	1	7
SPR_00112	tRNA links to Rfam database...	0.95	0.95	0.95	20	2680	2	0	1	1	1
SPR_00115	tRNA links to Rfam database...	0.76	0.76	0.76	16	2680	9	0	5	4	5
SPR_00117	tRNA links to Rfam database...	0.65	0.71	0.60	15	2825	11	1	9	1	6
SPR_00139	tRNA links to Rfam database...	0.98	0.95	1.00	20	2906	2	0	0	2	1
SPR_00153	tRNA links to Rfam database...	0.51	0.52	0.50	11	2904	14	2	9	3	10
SPR_00155	tRNA links to Rfam database...	0.49	0.52	0.46	11	2902	14	6	7	1	10
SPR_00156	tRNA links to Rfam database...	0.95	0.95	0.95	20	2905	9	0	1	8	1
SPR_00176	tRNA links to Rfam database...	0.23	0.25	0.22	5	2827	19	5	13	1	15
SPR_00177	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	3	0	0	3	0
SPR_00178	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	1	0	0	1	0
SPR_00191	tRNA links to Rfam database...	0.17	0.19	0.17	4	2826	20	6	14	0	17
SPR_00200	tRNA links to Rfam database...	0.68	0.71	0.65	15	2827	8	3	5	0	6
SPR_00224	tRNA links to Rfam database...	0.50	0.55	0.46	11	3717	19	5	8	6	9
SPR_00271	tRNA links to Rfam database...	0.48	0.52	0.44	11	2825	16	2	12	2	10
SPR_00273	tRNA links to Rfam database...	0.13	0.14	0.14	3	2828	20	3	16	1	18
SPR_00276	tRNA links to Rfam database...	0.32	0.38	0.29	8	2898	20	4	16	0	13
SPR_00277	tRNA links to Rfam database...	0.30	0.33	0.28	7	2901	19	2	16	1	14
SPR_00294	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	2	0	0	2	0
SPR_00295	tRNA links to Rfam database...	0.95	0.95	0.95	20	2754	4	0	1	3	1
SPR_00314	tRNA links to Rfam database...	0.95	0.95	0.95	20	2905	6	0	1	5	1
SPR_00315	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	3	0	0	3	0
SPR_00317	tRNA links to Rfam database...	0.54	0.60	0.50	12	2902	14	7	5	2	8
SPR_00318	tRNA links to Rfam database...	0.46	0.48	0.45	10	2904	14	3	9	2	11
SPR_00321	tRNA links to Rfam database...	0.51	0.57	0.46	12	2977	16	4	10	2	9
SPR_00333	tRNA links to Rfam database...	0.90	0.90	0.90	19	2754	6	0	2	4	2
SPR_00352	tRNA links to Rfam database...	0.67	0.62	0.72	13	2908	7	2	3	2	8
SPR_00353	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	4	0	0	4	0
SPR_00357	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	2	0	0	2	0
SPR_00358	tRNA links to Rfam database...	0.90	0.90	0.90	18	2906	7	0	2	5	2
SPR_00370	tRNA links to Rfam database...	0.26	0.24	0.29	5	2758	13	1	11	1	16
SPR_00386	tRNA links to Rfam database...	0.28	0.35	0.23	7	4156	23	8	15	0	13
SPR_00414	tRNA links to Rfam database...	0.63	0.67	0.61	14	3547	11	5	4	2	7
SPR_00415	tRNA links to Rfam database...	0.37	0.38	0.36	8	3548	20	4	10	6	13
SPR_00417	tRNA links to Rfam database...	0.58	0.59	0.57	13	3547	16	0	10	6	9
SPR_00418	tRNA links to Rfam database...	0.58	0.59	0.57	13	3547	16	0	10	6	9
SPR_00434	tRNA links to Rfam database...	0.90	0.90	0.90	19	2829	3	0	2	1	2
SPR_00435	tRNA links to Rfam database...	0.13	0.14	0.14	3	2828	19	4	15	0	18
SPR_00436	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	3	0	0	3	0
SPR_00437	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	3	0	0	3	0
SPR_00438	tRNA links to Rfam database...	0.95	0.95	0.95	20	2754	4	0	1	3	1
SPR_00452	tRNA links to Rfam database...	0.95	0.95	0.95	20	2829	2	0	1	1	1
SPR_00455	tRNA links to Rfam database...	0.74	0.76	0.73	16	2828	7	0	6	1	5
SPR_00456	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	4	0	0	4	0
SPR_00476	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	4	0	0	4	0
SPR_00479	tRNA links to Rfam database...	0.75	0.71	0.79	15	2831	6	0	4	2	6
SPR_00482	tRNA links to Rfam database...	-0.01	0.00	0.00	0	2676	25	9	16	0	21
SPR_00483	tRNA links to Rfam database...	0.34	0.33	0.35	7	2830	15	0	13	2	14
SPR_00487	tRNA links to Rfam database...	0.20	0.18	0.24	4	2684	13	1	12	0	18
SPR_00493	tRNA links to Rfam database...	0.73	0.73	0.73	16	2753	7	2	4	1	6
SPR_00496	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	4	0	0	4	0
SPR_00497	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	4	0	0	4	0
SPR_00502	tRNA links to Rfam database...	0.32	0.33	0.32	7	2904	15	6	9	0	14
SPR_00504	tRNA links to Rfam database...	0.47	0.50	0.45	10	2828	13	6	6	1	10
SPR_00505	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	6	0	0	6	0
SPR_00506	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	6	0	0	6	0
SPR_00509	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	6	0	0	6	0
SPR_00512	tRNA links to Rfam database...	0.48	0.55	0.42	11	2900	17	2	13	2	9
SPR_00513	tRNA links to Rfam database...	0.23	0.25	0.23	5	2904	18	6	11	1	15
SPR_00518	tRNA links to Rfam database...	0.75	0.75	0.75	15	2906	10	0	5	5	5
SPR_00548	tRNA links to Rfam database...	0.17	0.19	0.16	4	3378	22	3	18	1	17
SPR_00557	tRNA links to Rfam database...	0.34	0.38	0.32	8	2825	17	1	16	0	13
SPR_00561	tRNA links to Rfam database...	0.35	0.38	0.33	8	2826	16	1	15	0	13
SPR_00590	tRNA links to Rfam database...	0.51	0.60	0.44	12	2976	17	3	12	2	8
SPR_00593	tRNA links to Rfam database...	0.89	0.84	0.94	16	2758	5	0	1	4	3
SPR_00595	tRNA links to Rfam database...	0.53	0.57	0.50	12	2751	14	1	11	2	9
SPR_00598	tRNA links to Rfam database...	0.74	0.76	0.73	16	2981	12	0	6	6	5
SPR_00610	tRNA links to Rfam database...	0.52	0.57	0.48	12	2531	14	0	13	1	9
SPR_00620	tRNA links to Rfam database...	0.63	0.62	0.65	13	2983	13	0	7	6	8
SPR_00721	tRNA links to Rfam database...	0.45	0.48	0.43	10	2903	14	0	13	1	11
SPR_00722	tRNA links to Rfam database...	0.76	0.80	0.73	16	2904	11	0	6	5	4
SPR_00758	tRNA links to Rfam database...	0.68	0.71	0.65	15	2980	11	2	6	3	6
SPR_00760	tRNA links to Rfam database...	0.68	0.76	0.62	16	3544	14	5	5	4	5
SPR_00777	tRNA links to Rfam database...	0.65	0.70	0.61	14	2605	14	2	7	5	6
SPR_00867	tRNA links to Rfam database...	0.71	0.71	0.71	15	2905	8	2	4	2	6
SPR_00868	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	5	0	0	5	0
SPR_00943	tRNA links to Rfam database...	1.00	1.00	1.00	20	2536	6	0	0	6	0
SPR_00957	tRNA links to Rfam database...	0.58	0.57	0.60	12	2983	13	2	6	5	9
SPR_01040	tRNA links to Rfam database...	0.95	0.95	0.95	20	2754	3	0	1	2	1
SPR_01088	tRNA links to Rfam database...	0.95	0.95	0.95	20	2905	4	0	1	3	1
SPR_01095	tRNA links to Rfam database...	0.71	0.71	0.71	15	2829	8	0	6	2	6
SPR_01106	tRNA links to Rfam database...	0.50	0.52	0.48	11	2533	12	2	10	0	10
SPR_01117	tRNA links to Rfam database...	0.48	0.57	0.41	12	2974	18	3	14	1	9
SPR_01157	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	4	0	0	4	0
SRP_00006	Metazoa_SRP links to Rfam database...	0.49	0.49	0.49	49	45654	54	4	46	4	52
SRP_00008	Bacteria_small_SRP links to Rfam database...	0.55	0.60	0.52	15	2897	14	4	10	0	10
SRP_00011	Plant_SRP links to Rfam database...	0.10	0.11	0.09	11	46242	107	10	97	0	93
SRP_00015	Plant_SRP links to Rfam database...	0.30	0.30	0.30	30	46259	73	8	63	2	69
SRP_00020	Bacteria_small_SRP links to Rfam database...	0.93	0.94	0.91	31	5531	12	1	2	9	2
SRP_00024	Bacteria_large_SRP links to Rfam database...	0.51	0.49	0.53	43	37594	49	7	31	11	44
SRP_00026	Bacteria_large_SRP links to Rfam database...	0.68	0.68	0.69	60	36769	45	0	27	18	28
SRP_00027	Bacteria_large_SRP links to Rfam database...	0.52	0.51	0.54	44	37046	48	4	34	10	43
SRP_00030	Bacteria_large_SRP links to Rfam database...	0.30	0.31	0.29	27	36764	69	5	60	4	61
SRP_00031	Bacteria_large_SRP links to Rfam database...	0.64	0.61	0.67	54	36234	37	3	24	10	35
SRP_00037	Bacteria_large_SRP links to Rfam database...	0.17	0.17	0.17	15	36496	80	4	70	6	72
SRP_00038	Bacteria_small_SRP links to Rfam database...	0.33	0.33	0.34	11	5018	26	1	20	5	22
SRP_00042	Bacteria_small_SRP links to Rfam database...	0.32	0.36	0.30	9	3975	23	5	16	2	16
SRP_00044	Bacteria_small_SRP links to Rfam database...	0.86	0.84	0.87	27	6074	14	1	3	10	5
SRP_00046	Bacteria_small_SRP links to Rfam database...	0.53	0.53	0.53	17	4721	18	1	14	3	15
SRP_00050	Metazoa_SRP links to Rfam database...	0.85	0.84	0.86	83	44753	34	0	14	20	16
SRP_00051	Bacteria_small_SRP links to Rfam database...	0.93	0.93	0.93	28	5430	12	0	2	10	2
SRP_00054	Bacteria_small_SRP links to Rfam database...	0.62	0.63	0.63	20	5533	18	0	12	6	12
SRP_00057	Bacteria_small_SRP links to Rfam database...	0.38	0.40	0.36	14	6289	27	2	23	2	21
SRP_00058	Bacteria_small_SRP links to Rfam database...	0.93	0.94	0.91	32	5743	12	1	2	9	2
SRP_00066	Metazoa_SRP links to Rfam database...	0.14	0.14	0.14	14	45349	89	12	76	1	86
SRP_00072	Bacteria_small_SRP links to Rfam database...	0.65	0.66	0.66	19	6299	20	2	8	10	10
SRP_00074	Bacteria_small_SRP links to Rfam database...	0.09	0.10	0.09	3	6521	35	5	26	4	26
SRP_00075	Bacteria_small_SRP links to Rfam database...	0.85	0.85	0.85	29	5531	15	0	5	10	5
SRP_00077	Bacteria_small_SRP links to Rfam database...	0.57	0.59	0.55	22	6630	24	1	17	6	15
SRP_00081	Bacteria_small_SRP links to Rfam database...	0.57	0.61	0.54	19	5530	21	2	14	5	12
SRP_00084	Bacteria_small_SRP links to Rfam database...	0.75	0.76	0.74	26	5425	15	1	8	6	8
SRP_00086	Metazoa_SRP links to Rfam database...	0.62	0.62	0.61	62	44152	51	4	35	12	38
SRP_00088	Bacteria_large_SRP links to Rfam database...	0.38	0.38	0.38	34	34102	62	5	50	7	55
SRP_00089	Bacteria_large_SRP links to Rfam database...	0.66	0.67	0.66	60	35687	39	4	27	8	30
SRP_00090	Bacteria_large_SRP links to Rfam database...	0.41	0.39	0.44	35	35432	51	6	38	7	55
SRP_00094	Bacteria_small_SRP links to Rfam database...	0.08	0.08	0.09	2	4072	22	1	20	1	22
SRP_00095	Bacteria_small_SRP links to Rfam database...	0.24	0.28	0.22	7	3973	26	6	19	1	18
SRP_00098	Bacteria_small_SRP links to Rfam database...	0.72	0.76	0.68	28	6400	20	1	12	7	9
SRP_00102	Metazoa_SRP links to Rfam database...	0.44	0.44	0.45	44	44454	60	4	49	7	57
SRP_00103	Metazoa_SRP links to Rfam database...	0.67	0.68	0.66	69	45346	44	3	33	8	33
SRP_00105	Bacteria_small_SRP links to Rfam database...	0.18	0.18	0.19	6	5533	26	3	23	0	28
SRP_00107	Bacteria_small_SRP links to Rfam database...	0.30	0.37	0.25	7	3627	30	4	17	9	12
SRP_00121	Bacteria_small_SRP links to Rfam database...	0.59	0.60	0.58	15	4252	16	1	10	5	10
SRP_00128	Bacteria_small_SRP links to Rfam database...	0.69	0.72	0.67	26	6747	18	1	12	5	10
SRP_00132	Bacteria_small_SRP links to Rfam database...	0.64	0.66	0.63	19	4821	18	0	11	7	10
SRP_00134	Bacteria_large_SRP links to Rfam database...	0.71	0.76	0.67	22	5962	19	3	8	8	7
SRP_00141	Bacteria_small_SRP links to Rfam database...	0.89	0.90	0.88	37	6286	11	1	4	6	4
SRP_00152	Plant_SRP links to Rfam database...	0.31	0.31	0.32	32	45653	73	9	59	5	71
SRP_00161	Bacteria_small_SRP links to Rfam database...	0.45	0.45	0.45	10	2828	15	0	12	3	12
SRP_00162	Bacteria_small_SRP links to Rfam database...	0.50	0.52	0.48	12	2901	15	1	12	2	11
SRP_00163	Bacteria_small_SRP links to Rfam database...	0.63	0.65	0.61	17	3458	16	2	9	5	9
SRP_00164	Bacteria_small_SRP links to Rfam database...	0.96	0.97	0.94	34	6867	15	1	1	13	1
SRP_00170	Bacteria_small_SRP links to Rfam database...	0.32	0.36	0.29	9	4064	23	6	16	1	16
SRP_00171	Metazoa_SRP links to Rfam database...	0.17	0.19	0.16	17	45343	91	13	78	0	71
SRP_00173	Bacteria_large_SRP links to Rfam database...	0.27	0.26	0.28	23	38144	69	0	59	10	67
SRP_00174	Bacteria_large_SRP links to Rfam database...	0.26	0.27	0.26	23	38694	70	12	52	6	63
SRP_00178	Plant_SRP links to Rfam database...	0.17	0.17	0.18	17	45657	84	9	70	5	85
SRP_00179	Plant_SRP links to Rfam database...	0.03	0.03	0.03	3	45955	98	7	91	0	102
SRP_00181	Plant_SRP links to Rfam database...	0.09	0.09	0.10	9	45963	84	12	72	0	93
SRP_00182	Plant_SRP links to Rfam database...	0.34	0.35	0.34	35	45952	72	13	56	3	66
SRP_00184	Plant_SRP links to Rfam database...	0.24	0.24	0.25	24	45961	75	7	64	4	76
SRP_00188	Plant_SRP links to Rfam database...	0.26	0.27	0.25	21	31041	64	13	50	1	58
SRP_00194	Bacteria_small_SRP links to Rfam database...	0.31	0.33	0.29	7	3216	17	6	11	0	14
SRP_00200	Bacteria_small_SRP links to Rfam database...	0.34	0.33	0.35	12	6869	30	0	22	8	24
SRP_00209	Bacteria_small_SRP links to Rfam database...	0.52	0.56	0.50	15	4626	17	3	12	2	12
SRP_00213	Bacteria_small_SRP links to Rfam database...	0.35	0.40	0.31	10	4154	22	6	16	0	15
SRP_00215	Bacteria_small_SRP links to Rfam database...	0.82	0.80	0.83	20	3216	10	0	4	6	5
SRP_00227	Bacteria_small_SRP links to Rfam database...	0.81	0.81	0.81	25	5120	12	1	5	6	6
SRP_00228	Metazoa_SRP links to Rfam database...	0.61	0.61	0.62	58	45357	51	9	27	15	37
SRP_00231	Bacteria_small_SRP links to Rfam database...	0.64	0.65	0.65	22	5426	15	1	11	3	12
SRP_00233	Bacteria_small_SRP links to Rfam database...	0.79	0.73	0.86	24	5123	10	0	4	6	9
SRP_00234	Bacteria_large_SRP links to Rfam database...	0.71	0.71	0.71	61	36229	43	4	21	18	25
SRP_00243	Bacteria_small_SRP links to Rfam database...	0.48	0.45	0.52	14	5124	16	2	11	3	17
SRP_00244	Bacteria_small_SRP links to Rfam database...	0.42	0.41	0.43	16	6866	21	1	20	0	23
SRP_00250	Bacteria_small_SRP links to Rfam database...	0.75	0.78	0.72	28	6747	21	1	10	10	8
SRP_00251	Bacteria_small_SRP links to Rfam database...	0.68	0.72	0.65	26	6981	20	1	13	6	10
SRP_00266	Bacteria_small_SRP links to Rfam database...	0.69	0.66	0.73	19	4630	12	0	7	5	10
SRP_00268	Bacteria_small_SRP links to Rfam database...	0.36	0.37	0.36	10	4158	22	2	16	4	17
SRP_00269	Bacteria_small_SRP links to Rfam database...	0.31	0.30	0.33	10	5020	22	3	17	2	23
SRP_00270	Bacteria_small_SRP links to Rfam database...	0.40	0.39	0.41	12	4627	18	2	15	1	19
SRP_00271	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	3208	32	3	29	0	24
SRP_00273	Bacteria_small_SRP links to Rfam database...	0.85	0.83	0.87	33	6748	13	1	4	8	7
SRP_00274	Bacteria_small_SRP links to Rfam database...	0.68	0.68	0.68	26	6865	17	0	12	5	12
SRP_00295	Bacteria_small_SRP links to Rfam database...	0.96	0.97	0.95	37	6864	11	1	1	9	1
SRP_00303	Bacteria_small_SRP links to Rfam database...	0.69	0.69	0.69	22	6638	19	0	10	9	10
SRP_00308	Bacteria_large_SRP links to Rfam database...	0.27	0.26	0.27	23	36231	62	13	48	1	65
SRP_00310	Bacteria_small_SRP links to Rfam database...	0.75	0.74	0.77	17	2904	10	0	5	5	6
SRP_00312	Bacteria_small_SRP links to Rfam database...	0.34	0.37	0.32	10	4155	24	4	17	3	17
SRP_00315	Bacteria_small_SRP links to Rfam database...	0.46	0.48	0.46	11	2902	18	0	13	5	12
SRP_00317	Metazoa_SRP links to Rfam database...	0.14	0.14	0.14	14	45051	89	6	79	4	84
SRP_00318	Bacteria_small_SRP links to Rfam database...	0.47	0.48	0.48	11	2980	16	1	11	4	12
SRP_00325	Bacteria_small_SRP links to Rfam database...	0.77	0.73	0.83	24	4342	13	0	5	8	9
SRP_00326	Bacteria_small_SRP links to Rfam database...	0.18	0.19	0.18	6	5017	31	2	25	4	25
SRP_00333	Bacteria_small_SRP links to Rfam database...	0.76	0.68	0.85	23	5124	11	0	4	7	11
SRP_00335	Bacteria_large_SRP links to Rfam database...	0.27	0.38	0.19	15	35166	94	30	34	30	24
SRP_00337	Bacteria_large_SRP links to Rfam database...	0.61	0.60	0.61	55	35421	48	3	32	13	36
SRP_00338	Bacteria_small_SRP links to Rfam database...	0.94	0.94	0.94	34	5424	9	0	2	7	2
SRP_00341	Bacteria_small_SRP links to Rfam database...	0.43	0.45	0.41	14	4719	25	0	20	5	17
SRP_00342	Bacteria_small_SRP links to Rfam database...	0.57	0.60	0.56	15	3978	19	1	11	7	10
SRP_00347	Metazoa_SRP links to Rfam database...	0.64	0.66	0.62	63	46564	51	5	33	13	33
SRP_00350	Bacteria_small_SRP links to Rfam database...	0.32	0.33	0.32	9	3888	20	6	13	1	18
SRP_00356	Bacteria_small_SRP links to Rfam database...	0.43	0.40	0.46	12	5024	22	1	13	8	18
SRP_00357	Bacteria_small_SRP links to Rfam database...	0.94	0.94	0.94	34	5320	8	1	1	6	2
SRP_00358	Bacteria_small_SRP links to Rfam database...	0.87	0.89	0.86	31	6292	15	1	4	10	4
SRP_00367	Bacteria_small_SRP links to Rfam database...	0.96	0.97	0.94	34	6750	11	1	1	9	1
SRP_00368	Metazoa_SRP links to Rfam database...	0.52	0.52	0.52	51	43857	56	5	43	8	47
SRP_00369	Bacteria_small_SRP links to Rfam database...	0.89	0.89	0.89	31	5743	11	1	3	7	4
SRP_00383	Bacteria_small_SRP links to Rfam database...	0.53	0.54	0.52	13	3215	18	2	10	6	11
TMR_00017	tmRNA links to Rfam database...	0.27	0.26	0.27	27	67061	85	12	61	12	75
TMR_00018	tmRNA links to Rfam database...	0.34	0.37	0.32	34	64515	80	23	48	9	58
TMR_00038	tmRNA links to Rfam database...	0.48	0.51	0.46	56	71130	78	15	52	11	54
TMR_00042	tmRNA links to Rfam database...	0.24	0.24	0.24	24	62737	83	11	63	9	74
TMR_00046	tmRNA links to Rfam database...	0.38	0.42	0.35	40	62722	90	15	58	17	56
TMR_00048	tmRNA links to Rfam database...	0.51	0.55	0.47	52	64870	70	16	42	12	43
TMR_00080	tmRNA links to Rfam database...	0.19	0.22	0.17	21	70379	108	32	68	8	75
TMR_00082	tmRNA links to Rfam database...	0.30	0.33	0.28	32	67782	91	23	59	9	64
TMR_00123	tmRNA links to Rfam database...	0.21	0.23	0.21	23	66318	95	16	73	6	78
TMR_00137	tmRNA links to Rfam database...	0.30	0.34	0.27	30	60965	85	25	55	5	59
TMR_00142	tmRNA links to Rfam database...	0.30	0.33	0.28	34	70753	96	25	64	7	68
TMR_00207	tmRNA links to Rfam database...	0.26	0.27	0.25	28	72276	92	17	69	6	75
TMR_00257	tmRNA links to Rfam database...	0.26	0.29	0.24	28	67045	100	17	71	12	70
TMR_00271	tmRNA links to Rfam database...	0.19	0.21	0.18	19	64156	98	18	68	12	72
TMR_00332	tmRNA links to Rfam database...	0.27	0.29	0.25	29	67043	96	21	68	7	70
TMR_00366	tmRNA links to Rfam database...	0.25	0.27	0.23	27	67778	97	19	72	6	73
TMR_00378	tmRNA links to Rfam database...	0.17	0.20	0.15	19	67773	107	29	75	3	78
TMR_00399	tmRNA links to Rfam database...	0.30	0.32	0.29	30	64876	86	18	56	12	64
TMR_00404	tmRNA links to Rfam database...	0.20	0.22	0.18	20	67416	98	13	79	6	72
TMR_00427	tmRNA links to Rfam database...	0.15	0.15	0.14	15	67420	98	21	72	5	82
TMR_00443	tmRNA links to Rfam database...	0.23	0.25	0.22	26	67043	107	10	82	15	78
TMR_00451	tmRNA links to Rfam database...	0.15	0.17	0.13	15	63432	103	35	64	4	74
TMR_00458	tmRNA links to Rfam database...	0.32	0.33	0.30	31	63443	80	16	56	8	62
TMR_00469	tmRNA links to Rfam database...	0.17	0.19	0.16	19	64500	111	14	87	10	81
TMR_00472	tmRNA links to Rfam database...	0.26	0.27	0.25	26	64516	87	16	62	9	71
TMR_00519	tmRNA links to Rfam database...	0.14	0.15	0.13	14	63085	101	22	69	10	81
TMR_00520	tmRNA links to Rfam database...	0.17	0.18	0.16	18	63075	102	28	69	5	81
TMR_00522	tmRNA links to Rfam database...	0.27	0.30	0.24	29	63068	94	31	62	1	68
TMR_00528	tmRNA links to Rfam database...	0.23	0.25	0.22	24	63081	92	28	57	7	73
TMR_00540	tmRNA links to Rfam database...	0.26	0.28	0.24	29	73417	98	15	75	8	75
TMR_00568	tmRNA links to Rfam database...	0.39	0.39	0.39	39	60625	76	15	47	14	60
TMR_00571	tmRNA links to Rfam database...	0.50	0.51	0.50	50	60625	71	7	44	20	49
TMR_00580	tmRNA links to Rfam database...	0.43	0.45	0.41	45	60615	82	7	59	16	55
TMR_00584	tmRNA links to Rfam database...	0.27	0.28	0.26	27	60972	91	13	63	15	70
TMR_00586	tmRNA links to Rfam database...	0.47	0.49	0.44	48	60967	74	19	41	14	49
TMR_00616	tmRNA links to Rfam database...	0.36	0.39	0.34	39	67045	86	14	63	9	60
TMR_00699	tmRNA links to Rfam database...	0.23	0.25	0.22	25	67048	94	15	73	6	77
TMR_00702	tmRNA links to Rfam database...	0.13	0.14	0.12	14	67047	107	9	91	7	86
TMR_00703	tmRNA links to Rfam database...	0.21	0.23	0.20	23	67411	99	22	72	5	76

^top

Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.

Table of contents:

Overview

Performance plots

Performance of RNAalifold(20) - scored higher in this pairwise comparison

1. Total counts & total scores for RNAalifold(20)

2. Individual counts for RNAalifold(20) [ download as .csv ]

Performance of RNAwolf - scored lower in this pairwise comparison

1. Total counts & total scores for RNAwolf

2. Individual counts for RNAwolf [ download as .csv ]