CompaRNA - on-line benchmarks of RNA structure prediction methods

Laboratory of Structural Bioinformatics @ Adam Mickiewicz University in Poznan

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Overview

Metric	RNAalifold(20)		Sfold
MCC	0.687	>	0.530
Average MCC ± 95% Confidence Intervals	0.732 ± 0.016	>	0.621 ± 0.018
Sensitivity	0.600	>	0.475
Positive Predictive Value	0.787	>	0.591
Total TP	42122	>	33387
Total TN	119788148	>	119785190
Total FP	13654	<	26651
Total FP CONTRA	2054	<	3507
Total FP INCONS	9359	<	19599
Total FP COMP	2241	<	3545
Total FN	28112	<	36847
P-value	3.56938820447e-08

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Performance plots

Comparison of performance of RNAalifold(20) and Sfold. Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data (individual counts for RNAalifold(20) and Sfold).
Average Matthews Correlation Coefficients (MCC) with 95% confidence intervals (CIs) were plotted for different RNA families, for which at least 3 members were present in the benchmarking dataset. 'n' denotes the number of MCCs used to calculate the average and CI. See tables below for raw data (individual counts for RNAalifold(20) and Sfold).
Comparison of average Matthews Correlation Coefficients (MCCs) for RNAalifold(20) and Sfold. The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data (individual counts for RNAalifold(20) and Sfold).

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Performance of RNAalifold(20) - scored higher in this pairwise comparison

1. Total counts & total scores for RNAalifold(20)

Total Base Pair Counts
Total TP	42122
Total TN	119788148
Total FP	13654
Total FP CONTRA	2054
Total FP INCONS	9359
Total FP COMP	2241
Total FN	28112

Total Scores
MCC	0.687
Average MCC ± 95% Confidence Intervals	0.732 ± 0.016
Sensitivity	0.600
Positive Predictive Value	0.787
Nr of predictions	642

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2. Individual counts for RNAalifold(20) [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00004	RNaseP_bact_a links to Rfam database...	0.58	0.45	0.75	44	47836	15	1	14	0	53
ASE_00005	RNaseP_bact_a links to Rfam database...	0.64	0.49	0.85	57	57903	10	1	9	0	60
ASE_00006	RNaseP_bact_a links to Rfam database...	0.68	0.56	0.83	52	47523	12	0	11	1	41
ASE_00007	RNaseP_bact_a links to Rfam database...	0.75	0.63	0.90	69	59608	8	1	7	0	41
ASE_00012	RNaseP_bact_a links to Rfam database...	0.55	0.45	0.68	55	73839	30	1	25	4	68
ASE_00018	RNaseP_bact_a links to Rfam database...	0.74	0.60	0.91	80	80513	8	3	5	0	54
ASE_00020	RNaseP_bact_a links to Rfam database...	0.49	0.35	0.70	44	73857	20	7	12	1	82
ASE_00021	RNaseP_bact_a links to Rfam database...	0.54	0.41	0.73	65	104107	28	4	20	4	95
ASE_00022	RNaseP_bact_b links to Rfam database...	0.74	0.62	0.89	77	82941	16	0	10	6	47
ASE_00028	RNaseP_bact_b links to Rfam database...	0.76	0.62	0.93	78	84582	10	1	5	4	48
ASE_00035	RNaseP_bact_a links to Rfam database...	0.67	0.54	0.83	64	70423	19	2	11	6	54
ASE_00037	RNaseP_bact_a links to Rfam database...	0.72	0.62	0.83	68	59258	18	0	14	4	42
ASE_00038	RNaseP_bact_a links to Rfam database...	0.65	0.51	0.81	52	53564	12	1	11	0	49
ASE_00040	RNaseP_bact_a links to Rfam database...	0.69	0.55	0.86	73	78918	13	1	11	1	60
ASE_00041	RNaseP_bact_a links to Rfam database...	0.73	0.65	0.82	70	57545	15	0	15	0	38
ASE_00042	RNaseP_bact_a links to Rfam database...	0.52	0.39	0.70	57	90018	25	1	24	0	88
ASE_00044	RNaseP_bact_a links to Rfam database...	0.74	0.63	0.88	66	54540	9	1	8	0	39
ASE_00045	RNaseP_bact_b links to Rfam database...	0.73	0.69	0.77	55	47207	21	2	14	5	25
ASE_00064	RNaseP_bact_a links to Rfam database...	0.72	0.61	0.84	54	45387	13	0	10	3	35
ASE_00068	RNaseP_bact_a links to Rfam database...	0.73	0.55	0.96	47	37626	2	2	0	0	38
ASE_00074	RNaseP_bact_a links to Rfam database...	0.72	0.61	0.86	72	67812	14	0	12	2	47
ASE_00075	RNaseP_bact_a links to Rfam database...	0.55	0.40	0.76	65	108725	27	3	18	6	97
ASE_00077	RNaseP_bact_a links to Rfam database...	0.79	0.65	0.97	56	45092	5	1	1	3	30
ASE_00078	RNaseP_bact_a links to Rfam database...	0.77	0.70	0.84	58	43002	11	3	8	0	25
ASE_00080	RNaseP_bact_a links to Rfam database...	0.43	0.32	0.59	39	71565	27	3	24	0	84
ASE_00081	RNaseP_bact_a links to Rfam database...	0.72	0.56	0.93	54	49712	4	0	4	0	43
ASE_00082	RNaseP_bact_a links to Rfam database...	0.49	0.34	0.72	39	70446	21	1	14	6	77
ASE_00083	RNaseP_bact_a links to Rfam database...	0.77	0.62	0.96	68	62410	4	2	1	1	42
ASE_00084	RNaseP_bact_a links to Rfam database...	0.61	0.51	0.75	50	53561	17	4	13	0	49
ASE_00087	RNaseP_bact_a links to Rfam database...	0.64	0.44	0.93	64	88341	5	0	5	0	80
ASE_00090	RNaseP_bact_a links to Rfam database...	0.72	0.55	0.93	56	55551	4	0	4	0	45
ASE_00092	RNaseP_bact_a links to Rfam database...	0.73	0.58	0.93	65	63476	6	1	4	1	48
ASE_00099	RNaseP_bact_a links to Rfam database...	0.76	0.64	0.90	77	64534	11	0	9	2	43
ASE_00104	RNaseP_bact_a links to Rfam database...	0.66	0.54	0.81	64	64182	15	2	13	0	55
ASE_00105	RNaseP_bact_a links to Rfam database...	0.62	0.49	0.78	54	64192	18	2	13	3	57
ASE_00107	RNaseP_bact_a links to Rfam database...	0.72	0.58	0.90	74	73071	8	0	8	0	53
ASE_00114	RNaseP_bact_b links to Rfam database...	0.68	0.65	0.70	50	45380	31	0	21	10	27
ASE_00115	RNaseP_bact_a links to Rfam database...	0.73	0.60	0.88	61	54546	12	1	7	4	40
ASE_00118	RNaseP_bact_a links to Rfam database...	0.58	0.44	0.78	45	60668	14	4	9	1	57
ASE_00119	RNaseP_bact_a links to Rfam database...	0.57	0.41	0.80	44	62780	11	3	8	0	64
ASE_00123	RNaseP_bact_a links to Rfam database...	0.67	0.54	0.84	46	38448	9	2	7	0	39
ASE_00125	RNaseP_bact_a links to Rfam database...	0.70	0.55	0.89	48	39286	6	0	6	0	40
ASE_00126	RNaseP_bact_a links to Rfam database...	0.81	0.71	0.94	58	40408	4	0	4	0	24
ASE_00128	RNaseP_bact_a links to Rfam database...	0.74	0.60	0.91	60	53235	6	0	6	0	40
ASE_00129	RNaseP_bact_a links to Rfam database...	0.65	0.49	0.86	54	62772	9	3	6	0	57
ASE_00131	RNaseP_bact_a links to Rfam database...	0.62	0.48	0.80	41	39289	10	3	7	0	44
ASE_00134	RNaseP_bact_a links to Rfam database...	0.64	0.52	0.80	49	50342	12	3	9	0	46
ASE_00135	RNaseP_bact_a links to Rfam database...	0.49	0.38	0.63	41	63125	24	1	23	0	68
ASE_00136	RNaseP_bact_a links to Rfam database...	0.80	0.67	0.95	62	48140	3	2	1	0	30
ASE_00137	RNaseP_bact_a links to Rfam database...	0.62	0.45	0.85	44	48464	9	2	6	1	54
ASE_00138	RNaseP_bact_a links to Rfam database...	0.71	0.62	0.81	50	40408	15	0	12	3	31
ASE_00140	RNaseP_bact_a links to Rfam database...	0.69	0.51	0.93	64	70807	5	1	4	0	61
ASE_00142	RNaseP_bact_a links to Rfam database...	0.70	0.58	0.84	71	67076	16	0	14	2	51
ASE_00146	RNaseP_bact_a links to Rfam database...	0.78	0.67	0.91	83	70785	11	1	7	3	41
ASE_00153	RNaseP_nuc links to Rfam database...	0.41	0.34	0.50	25	57580	28	1	24	3	48
ASE_00161	RNaseP_bact_b links to Rfam database...	0.83	0.80	0.86	70	53547	17	0	11	6	17
ASE_00163	RNaseP_bact_a links to Rfam database...	0.64	0.52	0.79	48	53240	13	4	9	0	45
ASE_00165	RNaseP_bact_a links to Rfam database...	0.66	0.48	0.91	48	52922	6	1	4	1	53
ASE_00170	RNaseP_bact_a links to Rfam database...	0.62	0.53	0.74	49	48762	18	4	13	1	44
ASE_00171	RNaseP_bact_a links to Rfam database...	0.60	0.46	0.80	43	48462	11	4	7	0	51
ASE_00172	RNaseP_bact_a links to Rfam database...	0.80	0.67	0.95	71	58921	7	3	1	3	35
ASE_00174	RNaseP_bact_a links to Rfam database...	0.56	0.41	0.75	45	61015	15	2	13	0	64
ASE_00175	RNaseP_bact_a links to Rfam database...	0.61	0.50	0.74	54	59958	19	3	16	0	53
ASE_00179	RNaseP_bact_a links to Rfam database...	0.78	0.68	0.90	57	44190	6	2	4	0	27
ASE_00180	RNaseP_bact_a links to Rfam database...	0.66	0.53	0.82	53	51295	12	4	8	0	47
ASE_00181	RNaseP_bact_a links to Rfam database...	0.58	0.42	0.80	45	57574	12	3	8	1	61
ASE_00182	RNaseP_bact_a links to Rfam database...	0.44	0.29	0.68	39	84198	18	4	14	0	97
ASE_00183	RNaseP_bact_a links to Rfam database...	0.55	0.39	0.79	44	61369	12	4	8	0	69
ASE_00184	RNaseP_bact_a links to Rfam database...	0.65	0.50	0.84	51	54554	10	3	7	0	51
ASE_00185	RNaseP_bact_a links to Rfam database...	0.70	0.51	0.97	65	73469	2	1	1	0	63
ASE_00186	RNaseP_bact_a links to Rfam database...	0.62	0.49	0.79	65	78921	19	2	15	2	67
ASE_00190	RNaseP_bact_b links to Rfam database...	0.64	0.52	0.78	47	45391	17	0	13	4	43
ASE_00197	RNaseP_bact_a links to Rfam database...	0.50	0.37	0.69	53	89176	24	0	24	0	92
ASE_00198	RNaseP_bact_a links to Rfam database...	0.68	0.54	0.86	55	52586	9	1	8	0	47
ASE_00203	RNaseP_bact_a links to Rfam database...	0.65	0.51	0.83	49	46606	10	2	8	0	47
ASE_00212	RNaseP_bact_a links to Rfam database...	0.64	0.49	0.84	73	93874	17	0	14	3	75
ASE_00214	RNaseP_bact_a links to Rfam database...	0.69	0.51	0.93	53	56223	5	0	4	1	50
ASE_00215	RNaseP_bact_a links to Rfam database...	0.69	0.49	0.96	49	48465	2	2	0	0	50
ASE_00216	RNaseP_bact_a links to Rfam database...	0.77	0.61	0.96	50	39288	3	0	2	1	32
ASE_00217	RNaseP_bact_a links to Rfam database...	0.78	0.67	0.91	60	40404	7	2	4	1	30
ASE_00221	RNaseP_bact_a links to Rfam database...	0.78	0.68	0.89	80	64530	10	1	9	0	37
ASE_00228	RNaseP_bact_a links to Rfam database...	0.70	0.62	0.79	53	46904	15	5	9	1	33
ASE_00229	RNaseP_bact_a links to Rfam database...	0.74	0.61	0.90	53	42427	8	0	6	2	34
ASE_00231	RNaseP_bact_a links to Rfam database...	0.59	0.46	0.76	44	47837	18	0	14	4	52
ASE_00232	RNaseP_bact_a links to Rfam database...	0.78	0.65	0.93	55	38444	4	0	4	0	29
ASE_00234	RNaseP_bact_a links to Rfam database...	0.50	0.32	0.77	41	75413	12	3	9	0	88
ASE_00238	RNaseP_bact_a links to Rfam database...	0.59	0.46	0.78	52	64194	16	0	15	1	62
ASE_00241	RNaseP_bact_a links to Rfam database...	0.70	0.60	0.83	52	43893	14	3	8	3	35
ASE_00242	RNaseP_bact_a links to Rfam database...	0.73	0.62	0.87	69	60996	11	1	9	1	43
ASE_00248	RNaseP_bact_a links to Rfam database...	0.73	0.62	0.87	71	62399	11	3	8	0	43
ASE_00254	RNaseP_bact_a links to Rfam database...	0.79	0.68	0.92	56	36795	6	0	5	1	26
ASE_00255	RNaseP_bact_a links to Rfam database...	0.49	0.40	0.60	52	74605	35	1	33	1	78
ASE_00257	RNaseP_bact_a links to Rfam database...	0.62	0.52	0.75	50	50973	17	3	14	0	47
ASE_00263	RNaseP_bact_a links to Rfam database...	0.61	0.44	0.85	53	70438	9	1	8	0	67
ASE_00267	RNaseP_bact_a links to Rfam database...	0.82	0.75	0.89	66	45076	9	3	5	1	22
ASE_00270	RNaseP_bact_a links to Rfam database...	0.30	0.18	0.50	23	72344	25	1	22	2	105
ASE_00274	RNaseP_bact_a links to Rfam database...	0.50	0.36	0.69	37	55557	17	5	12	0	66
ASE_00277	RNaseP_bact_a links to Rfam database...	0.48	0.37	0.62	34	48150	21	4	17	0	57
ASE_00279	RNaseP_bact_a links to Rfam database...	0.74	0.60	0.91	61	53234	6	0	6	0	40
ASE_00280	RNaseP_bact_a links to Rfam database...	0.68	0.55	0.84	54	51939	10	1	9	0	44
ASE_00281	RNaseP_bact_a links to Rfam database...	0.87	0.76	0.99	67	44483	1	0	1	0	21
ASE_00282	RNaseP_bact_a links to Rfam database...	0.59	0.43	0.82	54	77749	12	3	9	0	73
ASE_00283	RNaseP_bact_a links to Rfam database...	0.65	0.51	0.83	55	61710	11	2	9	0	52
ASE_00284	RNaseP_bact_a links to Rfam database...	0.70	0.53	0.92	57	58249	5	0	5	0	51
ASE_00285	RNaseP_bact_a links to Rfam database...	0.63	0.48	0.84	58	68937	11	2	9	0	64
ASE_00286	RNaseP_bact_a links to Rfam database...	0.79	0.66	0.94	61	46600	4	0	4	0	31
ASE_00287	RNaseP_bact_a links to Rfam database...	0.63	0.48	0.84	49	54888	9	1	8	0	54
ASE_00292	RNaseP_bact_a links to Rfam database...	0.69	0.56	0.85	77	81719	14	3	11	0	61
ASE_00294	RNaseP_bact_a links to Rfam database...	0.64	0.47	0.87	81	114388	14	2	10	2	90
ASE_00296	RNaseP_bact_a links to Rfam database...	0.62	0.47	0.81	68	91722	16	3	13	0	77
ASE_00297	RNaseP_bact_a links to Rfam database...	0.69	0.52	0.93	51	52920	7	0	4	3	47
ASE_00298	RNaseP_bact_a links to Rfam database...	0.65	0.51	0.83	58	67458	12	5	7	0	55
ASE_00305	RNaseP_bact_b links to Rfam database...	0.70	0.62	0.79	53	54548	24	1	13	10	32
ASE_00318	RNaseP_bact_b links to Rfam database...	0.74	0.60	0.91	71	80122	17	2	5	10	47
ASE_00321	RNaseP_bact_b links to Rfam database...	0.81	0.74	0.88	65	54541	20	1	8	11	23
ASE_00328	RNaseP_bact_b links to Rfam database...	0.71	0.64	0.77	72	72678	27	5	16	6	40
ASE_00332	RNaseP_bact_a links to Rfam database...	0.76	0.63	0.92	87	81715	8	0	8	0	51
ASE_00335	RNaseP_bact_b links to Rfam database...	0.70	0.62	0.80	72	75376	24	5	13	6	44
ASE_00340	RNaseP_bact_a links to Rfam database...	0.65	0.55	0.76	47	45994	15	7	8	0	38
ASE_00342	RNaseP_bact_a links to Rfam database...	0.72	0.61	0.86	70	62400	14	3	8	3	45
ASE_00353	RNaseP_bact_a links to Rfam database...	0.65	0.50	0.84	53	57907	10	1	9	0	54
ASE_00361	RNaseP_bact_a links to Rfam database...	0.69	0.51	0.93	65	75396	5	1	4	0	62
ASE_00362	RNaseP_bact_a links to Rfam database...	0.75	0.63	0.90	57	48142	6	2	4	0	34
ASE_00363	RNaseP_bact_a links to Rfam database...	0.72	0.63	0.83	59	51289	12	2	10	0	35
ASE_00364	RNaseP_bact_a links to Rfam database...	0.55	0.39	0.77	41	54232	12	1	11	0	64
ASE_00366	RNaseP_bact_a links to Rfam database...	0.51	0.37	0.71	36	58602	16	1	14	1	62
ASE_00367	RNaseP_bact_a links to Rfam database...	0.78	0.65	0.93	56	43011	4	0	4	0	30
ASE_00369	RNaseP_bact_a links to Rfam database...	0.69	0.57	0.84	61	55872	12	3	9	0	46
ASE_00370	RNaseP_bact_a links to Rfam database...	0.66	0.51	0.84	43	41854	8	0	8	0	41
ASE_00372	RNaseP_bact_a links to Rfam database...	0.74	0.62	0.87	62	51932	9	0	9	0	38
ASE_00374	RNaseP_bact_a links to Rfam database...	0.74	0.59	0.93	52	44794	4	0	4	0	36
ASE_00376	RNaseP_bact_a links to Rfam database...	0.73	0.58	0.92	61	56887	6	0	5	1	44
ASE_00377	RNaseP_bact_a links to Rfam database...	0.73	0.59	0.90	63	57560	7	0	7	0	44
ASE_00379	RNaseP_bact_a links to Rfam database...	0.75	0.62	0.90	55	45995	6	2	4	0	34
ASE_00382	RNaseP_bact_a links to Rfam database...	0.70	0.60	0.82	50	41844	11	2	9	0	34
ASE_00383	RNaseP_bact_a links to Rfam database...	0.77	0.66	0.90	69	54538	11	3	5	3	36
ASE_00384	RNaseP_bact_a links to Rfam database...	0.74	0.59	0.93	54	48458	4	0	4	0	38
ASE_00386	RNaseP_bact_a links to Rfam database...	0.75	0.64	0.90	61	50335	7	2	5	0	35
ASE_00387	RNaseP_bact_a links to Rfam database...	0.74	0.61	0.90	63	55875	7	0	7	0	41
ASE_00388	RNaseP_bact_a links to Rfam database...	0.73	0.61	0.87	54	45691	10	1	7	2	35
ASE_00390	RNaseP_bact_a links to Rfam database...	0.73	0.60	0.88	51	42137	7	0	7	0	34
ASE_00393	RNaseP_bact_a links to Rfam database...	0.67	0.58	0.78	54	47826	16	2	13	1	39
ASE_00394	RNaseP_bact_a links to Rfam database...	0.68	0.56	0.83	52	46908	11	3	8	0	41
ASE_00395	RNaseP_bact_a links to Rfam database...	0.87	0.79	0.97	66	41548	2	0	2	0	18
ASE_00396	RNaseP_bact_a links to Rfam database...	0.74	0.63	0.88	52	41557	7	0	7	0	31
ASE_00397	RNaseP_bact_a links to Rfam database...	0.78	0.64	0.96	67	54545	5	3	0	2	38
ASE_00398	RNaseP_bact_a links to Rfam database...	0.63	0.48	0.82	50	55884	12	3	8	1	54
ASE_00400	RNaseP_bact_a links to Rfam database...	0.78	0.66	0.92	70	57894	11	3	3	5	36
ASE_00401	RNaseP_bact_a links to Rfam database...	0.54	0.37	0.81	46	76971	11	3	8	0	80
ASE_00402	RNaseP_bact_a links to Rfam database...	0.78	0.66	0.93	56	42426	4	0	4	0	29
ASE_00403	RNaseP_bact_a links to Rfam database...	0.69	0.51	0.93	55	55886	4	0	4	0	52
ASE_00404	RNaseP_bact_a links to Rfam database...	0.77	0.64	0.93	54	43013	5	1	3	1	31
ASE_00406	RNaseP_bact_a links to Rfam database...	0.69	0.56	0.84	53	48765	10	1	9	0	41
ASE_00411	RNaseP_bact_a links to Rfam database...	0.64	0.52	0.79	46	49397	12	7	5	0	43
ASE_00412	RNaseP_bact_a links to Rfam database...	0.61	0.49	0.76	51	58244	20	0	16	4	54
ASE_00413	RNaseP_bact_a links to Rfam database...	0.60	0.52	0.70	42	44491	21	4	14	3	39
ASE_00415	RNaseP_bact_a links to Rfam database...	0.55	0.40	0.76	41	54892	14	0	13	1	62
ASE_00416	RNaseP_bact_a links to Rfam database...	0.70	0.60	0.83	76	77329	16	2	14	0	51
ASE_00419	RNaseP_bact_a links to Rfam database...	0.56	0.40	0.79	41	54894	11	2	9	0	62
ASE_00422	RNaseP_bact_a links to Rfam database...	0.69	0.59	0.82	55	46904	13	0	12	1	39
ASE_00423	RNaseP_bact_a links to Rfam database...	0.70	0.61	0.80	67	56869	18	3	14	1	42
ASE_00427	RNaseP_nuc links to Rfam database...	0.69	0.65	0.73	30	40714	23	4	7	12	16
ASE_00428	RNaseP_bact_a links to Rfam database...	0.66	0.54	0.80	68	76551	17	1	16	0	57
ASE_00430	RNaseP_bact_a links to Rfam database...	0.69	0.57	0.83	55	46905	12	0	11	1	42
ASE_00437	RNaseP_bact_a links to Rfam database...	0.45	0.36	0.58	48	79318	35	2	33	0	87
ASE_00441	RNaseP_bact_a links to Rfam database...	0.55	0.38	0.80	43	64207	15	0	11	4	69
ASE_00448	RNaseP_bact_a links to Rfam database...	0.77	0.70	0.86	78	64170	13	1	12	0	34
ASE_00451	RNaseP_bact_a links to Rfam database...	0.70	0.56	0.86	70	70795	11	3	8	0	55
CRW_00024	SSU_rRNA_archaea links to Rfam database...	0.87	0.84	0.90	385	1085172	61	7	37	17	73
CRW_00034	SSU_rRNA_bacteria links to Rfam database...	0.83	0.78	0.87	371	1141890	74	12	43	19	103
CRW_00048	SSU_rRNA_bacteria links to Rfam database...	0.83	0.80	0.86	374	1170779	75	11	51	13	96
CRW_00054	SSU_rRNA_bacteria links to Rfam database...	0.84	0.82	0.87	372	1107390	68	12	42	14	84
CRW_00059	SSU_rRNA_bacteria links to Rfam database...	0.81	0.76	0.86	361	1172324	71	11	50	10	112
CRW_00061	SSU_rRNA_bacteria links to Rfam database...	0.85	0.80	0.90	382	1181529	55	14	28	13	94
CRW_00068	SSU_rRNA_bacteria links to Rfam database...	0.86	0.83	0.89	381	1108875	61	12	37	12	76
CRW_00096	SSU_rRNA_bacteria links to Rfam database...	0.85	0.81	0.90	376	1178461	63	6	37	20	89
CRW_00140	SSU_rRNA_bacteria links to Rfam database...	0.84	0.82	0.87	380	1135841	71	13	44	14	83
CRW_00141	SSU_rRNA_bacteria links to Rfam database...	0.82	0.78	0.87	371	1201597	71	12	45	14	105
CRW_00150	SSU_rRNA_bacteria links to Rfam database...	0.84	0.80	0.88	372	1152500	62	12	37	13	94
CRW_00152	SSU_rRNA_bacteria links to Rfam database...	0.79	0.75	0.82	355	1179984	91	17	60	14	116
CRW_00166	SSU_rRNA_bacteria links to Rfam database...	0.83	0.79	0.88	368	1190777	71	7	44	20	100
CRW_00173	SSU_rRNA_bacteria links to Rfam database...	0.77	0.75	0.80	332	1082242	94	12	70	12	113
CRW_00177	SSU_rRNA_bacteria links to Rfam database...	0.80	0.76	0.84	358	1178455	78	13	54	11	115
CRW_00196	SSU_rRNA_bacteria links to Rfam database...	0.82	0.79	0.86	373	1207803	68	15	44	9	102
CRW_00230	SSU_rRNA_bacteria links to Rfam database...	0.83	0.79	0.88	378	1198495	67	12	41	14	100
CRW_00245	SSU_rRNA_bacteria links to Rfam database...	0.86	0.83	0.89	378	1105903	56	14	33	9	75
CRW_00248	SSU_rRNA_bacteria links to Rfam database...	0.79	0.75	0.83	364	1218705	87	17	55	15	120
CRW_00250	SSU_rRNA_bacteria links to Rfam database...	0.83	0.78	0.88	373	1198502	61	12	39	10	105
CRW_00256	SSU_rRNA_bacteria links to Rfam database...	0.82	0.78	0.87	363	1192322	68	14	41	13	105
CRW_00270	SSU_rRNA_bacteria links to Rfam database...	0.85	0.83	0.88	376	1111859	66	12	39	15	79
CRW_00271	SSU_rRNA_bacteria links to Rfam database...	0.82	0.79	0.87	363	1122332	69	11	45	13	99
CRW_00273	SSU_rRNA_bacteria links to Rfam database...	0.84	0.81	0.87	360	1085185	68	13	43	12	86
CRW_00275	SSU_rRNA_bacteria links to Rfam database...	0.84	0.81	0.87	368	1114849	68	12	42	14	89
CRW_00277	SSU_rRNA_bacteria links to Rfam database...	0.82	0.79	0.85	359	1110374	76	14	48	14	94
CRW_00278	SSU_rRNA_bacteria links to Rfam database...	0.82	0.78	0.86	349	1129851	72	10	46	16	101
CRW_00279	SSU_rRNA_bacteria links to Rfam database...	0.81	0.78	0.85	360	1179994	80	12	50	18	104
CRW_00280	SSU_rRNA_bacteria links to Rfam database...	0.83	0.79	0.87	360	1117845	71	12	43	16	93
CRW_00281	SSU_rRNA_bacteria links to Rfam database...	0.82	0.78	0.85	363	1144916	75	12	50	13	101
CRW_00284	SSU_rRNA_bacteria links to Rfam database...	0.84	0.80	0.89	363	1131350	62	12	35	15	93
CRW_00285	SSU_rRNA_bacteria links to Rfam database...	0.83	0.79	0.88	364	1117844	66	13	39	14	94
CRW_00289	SSU_rRNA_bacteria links to Rfam database...	0.81	0.76	0.86	361	1189232	70	13	47	10	115
CRW_00298	SSU_rRNA_eukarya links to Rfam database...	0.43	0.38	0.49	187	1620517	224	43	153	28	307
CRW_00301	SSU_rRNA_eukarya links to Rfam database...	0.42	0.37	0.48	192	1762101	229	37	173	19	327
CRW_00306	SSU_rRNA_eukarya links to Rfam database...	0.42	0.38	0.46	176	1445467	237	39	168	30	286
CRW_00310	SSU_rRNA_eukarya links to Rfam database...	0.46	0.39	0.55	204	1805579	190	29	138	23	317
CRW_00326	SSU_rRNA_eukarya links to Rfam database...	0.41	0.35	0.47	178	1627730	219	36	166	17	324
CRW_00330	SSU_rRNA_eukarya links to Rfam database...	0.40	0.35	0.47	182	1988624	243	35	174	34	335
CRW_00332	SSU_rRNA_eukarya links to Rfam database...	0.39	0.34	0.43	164	1769642	239	35	180	24	313
CRW_00333	SSU_rRNA_eukarya links to Rfam database...	0.34	0.29	0.40	150	1892114	241	34	187	20	364
CRW_00345	SSU_rRNA_eukarya links to Rfam database...	0.43	0.38	0.48	189	1586477	222	39	166	17	309
CRW_00346	SSU_rRNA_eukarya links to Rfam database...	0.45	0.40	0.50	202	1584688	230	32	168	30	299
CRW_00348	SSU_rRNA_eukarya links to Rfam database...	0.43	0.38	0.48	190	1615106	228	41	166	21	313
CRW_00358	SSU_rRNA_eukarya links to Rfam database...	0.43	0.38	0.49	192	1674972	227	34	167	26	315
CRW_00366	SSU_rRNA_eukarya links to Rfam database...	0.39	0.34	0.45	166	1579381	248	30	176	42	316
CRW_00370	SSU_rRNA_eukarya links to Rfam database...	0.52	0.47	0.57	240	1640342	204	34	150	20	266
CRW_00371	SSU_rRNA_eukarya links to Rfam database...	0.43	0.38	0.49	187	1611527	222	27	169	26	309
CRW_00372	SSU_rRNA_eukarya links to Rfam database...	0.40	0.35	0.46	174	1625925	228	37	170	21	324
CRW_00379	SSU_rRNA_eukarya links to Rfam database...	0.40	0.34	0.47	179	2126574	228	31	169	28	355
CRW_00386	SSU_rRNA_eukarya links to Rfam database...	0.44	0.37	0.51	193	1750879	199	35	149	15	322
CRW_00403	SSU_rRNA_eukarya links to Rfam database...	0.39	0.37	0.42	170	1606127	272	38	193	41	294
CRW_00411	SSU_rRNA_eukarya links to Rfam database...	0.43	0.39	0.48	191	1615105	227	43	164	20	305
CRW_00414	SSU_rRNA_eukarya links to Rfam database...	0.38	0.35	0.41	171	1665811	266	36	207	23	324
CRW_00466	SSU_rRNA_bacteria links to Rfam database...	0.84	0.81	0.86	373	1116333	74	11	48	15	85
CRW_00548	5S_rRNA links to Rfam database...	0.89	0.79	1.00	30	7351	2	0	0	2	8
CRW_00552	5S_rRNA links to Rfam database...	0.82	0.67	1.00	26	7114	1	0	0	1	13
CRW_00555	5S_rRNA links to Rfam database...	0.77	0.60	1.00	24	7602	1	0	0	1	16
CRW_00567	5S_rRNA links to Rfam database...	0.84	0.70	1.00	28	7475	1	0	0	1	12
CRW_00570	5S_rRNA links to Rfam database...	0.90	0.86	0.94	32	6869	5	0	2	3	5
CRW_00573	5S_rRNA links to Rfam database...	0.82	0.68	1.00	27	7113	1	0	0	1	13
CRW_00589	SSU_rRNA_bacteria links to Rfam database...	0.86	0.81	0.91	361	1094062	61	7	30	24	84
CRW_00590	SSU_rRNA_bacteria links to Rfam database...	0.84	0.79	0.89	358	1119354	70	6	38	26	94
CRW_00591	SSU_rRNA_bacteria links to Rfam database...	0.87	0.83	0.91	368	1098500	61	9	26	26	78
CRW_00598	SSU_rRNA_eukarya links to Rfam database...	0.42	0.38	0.47	187	1665825	229	39	174	16	304
CRW_00758	SSU_rRNA_eukarya links to Rfam database...	0.48	0.43	0.53	210	1640373	205	34	149	22	273
CRW_00759	SSU_rRNA_eukarya links to Rfam database...	0.42	0.38	0.48	182	1636762	232	39	162	31	299
CRW_00760	SSU_rRNA_eukarya links to Rfam database...	0.43	0.37	0.50	179	1638594	209	38	144	27	307
CRW_00772	SSU_rRNA_bacteria links to Rfam database...	0.78	0.74	0.83	298	945642	94	6	54	34	106
CRW_00789	SSU_rRNA_bacteria links to Rfam database...	0.82	0.78	0.87	348	1137388	80	6	44	30	99
CRW_00795	SSU_rRNA_bacteria links to Rfam database...	0.74	0.70	0.79	276	1152572	131	10	63	58	118
CRW_00849	SSU_rRNA_bacteria links to Rfam database...	0.78	0.74	0.82	350	1117832	97	13	65	19	120
CRW_00997	SSU_rRNA_bacteria links to Rfam database...	0.84	0.81	0.88	374	1135854	61	12	38	11	90
CRW_01153	SSU_rRNA_eukarya links to Rfam database...	0.47	0.42	0.53	210	1606133	216	27	158	31	293
CRW_01171	SSU_rRNA_eukarya links to Rfam database...	0.44	0.38	0.50	193	1593619	210	32	161	17	313
CRW_01300	SSU_rRNA_eukarya links to Rfam database...	0.52	0.45	0.59	231	1693331	174	31	127	16	284
CRW_01484	5S_rRNA links to Rfam database...	0.82	0.67	1.00	26	7477	1	0	0	1	13
CRW_01485	5S_rRNA links to Rfam database...	0.89	0.79	1.00	31	7472	2	0	0	2	8
CRW_01487	5S_rRNA links to Rfam database...	0.81	0.68	0.97	28	7474	1	0	1	0	13
CRW_01489	5S_rRNA links to Rfam database...	0.80	0.64	1.00	25	7478	0	0	0	0	14
CRW_01491	5S_rRNA links to Rfam database...	0.79	0.63	1.00	27	8358	0	0	0	0	16
CRW_01492	5S_rRNA links to Rfam database...	0.74	0.60	0.93	25	7599	2	0	2	0	17
CRW_01494	5S_rRNA links to Rfam database...	0.74	0.55	1.00	22	7118	0	0	0	0	18
CRW_01497	5S_rRNA links to Rfam database...	0.72	0.55	0.96	22	7117	1	0	1	0	18
CRW_01498	5S_rRNA links to Rfam database...	0.79	0.63	1.00	27	8101	0	0	0	0	16
CRW_01499	5S_rRNA links to Rfam database...	0.73	0.56	0.96	23	7977	1	0	1	0	18
CRW_01500	5S_rRNA links to Rfam database...	0.79	0.63	1.00	24	7726	0	0	0	0	14
CRW_01501	5S_rRNA links to Rfam database...	0.73	0.58	0.93	26	8487	2	0	2	0	19
CRW_01508	5S_rRNA links to Rfam database...	0.83	0.69	1.00	29	7972	0	0	0	0	13
CRW_01532	5S_rRNA links to Rfam database...	0.94	0.89	1.00	33	7107	2	0	0	2	4
CRW_01533	5S_rRNA links to Rfam database...	0.82	0.70	0.96	26	7113	2	0	1	1	11
CRW_01534	5S_rRNA links to Rfam database...	0.86	0.78	0.94	29	7109	5	0	2	3	8
CRW_01535	5S_rRNA links to Rfam database...	0.89	0.81	0.97	30	7109	4	0	1	3	7
CRW_01536	5S_rRNA links to Rfam database...	0.94	0.89	1.00	33	6988	1	0	0	1	4
CRW_01537	5S_rRNA links to Rfam database...	0.90	0.86	0.94	32	7106	3	0	2	1	5
CRW_01539	5S_rRNA links to Rfam database...	0.92	0.89	0.94	33	7105	5	0	2	3	4
CRW_01540	5S_rRNA links to Rfam database...	0.92	0.89	0.94	33	7105	5	0	2	3	4
CRW_01541	5S_rRNA links to Rfam database...	0.74	0.59	0.92	22	7116	5	0	2	3	15
CRW_01542	5S_rRNA links to Rfam database...	0.90	0.86	0.94	32	7106	4	0	2	2	5
CRW_01544	5S_rRNA links to Rfam database...	0.87	0.81	0.94	30	7108	3	0	2	1	7
CRW_01548	5S_rRNA links to Rfam database...	0.90	0.86	0.94	32	6987	5	0	2	3	5
CRW_01555	5S_rRNA links to Rfam database...	0.92	0.89	0.94	33	9010	2	0	2	0	4
CRW_01556	5S_rRNA links to Rfam database...	0.66	0.54	0.80	20	7115	7	0	5	2	17
CRW_01557	5S_rRNA links to Rfam database...	0.89	0.84	0.94	31	7107	5	0	2	3	6
CRW_01559	5S_rRNA links to Rfam database...	0.94	0.89	1.00	33	7227	0	0	0	0	4
CRW_01562	5S_rRNA links to Rfam database...	0.82	0.70	0.96	26	7113	2	0	1	1	11
CRW_01563	5S_rRNA links to Rfam database...	0.73	0.70	0.76	26	6869	10	0	8	2	11
CRW_01566	5S_rRNA links to Rfam database...	0.66	0.43	1.00	16	7124	0	0	0	0	21
CRW_01568	5S_rRNA links to Rfam database...	0.89	0.84	0.94	31	7107	3	0	2	1	6
CRW_01569	5S_rRNA links to Rfam database...	0.87	0.81	0.94	30	7108	2	0	2	0	7
CRW_01570	5S_rRNA links to Rfam database...	0.91	0.84	1.00	31	7109	1	0	0	1	6
CRW_01572	5S_rRNA links to Rfam database...	0.82	0.78	0.85	29	6987	8	0	5	3	8
CRW_01573	5S_rRNA links to Rfam database...	0.89	0.84	0.94	31	7227	3	0	2	1	6
CRW_01578	5S_rRNA links to Rfam database...	0.90	0.86	0.94	32	7106	4	0	2	2	5
CRW_01580	5S_rRNA links to Rfam database...	0.90	0.86	0.94	32	7106	2	0	2	0	5
CRW_01581	5S_rRNA links to Rfam database...	0.90	0.81	1.00	30	7110	1	0	0	1	7
CRW_01583	5S_rRNA links to Rfam database...	0.92	0.89	0.94	33	7105	5	0	2	3	4
CRW_01584	5S_rRNA links to Rfam database...	0.87	0.81	0.94	30	7108	3	0	2	1	7
CRW_01590	5S_rRNA links to Rfam database...	0.82	0.73	0.93	27	7111	5	0	2	3	10
CRW_01593	5S_rRNA links to Rfam database...	0.89	0.84	0.94	31	7107	3	0	2	1	6
CRW_01595	5S_rRNA links to Rfam database...	0.89	0.84	0.94	31	8482	5	0	2	3	6
CRW_01599	5S_rRNA links to Rfam database...	0.87	0.81	0.94	30	7108	5	0	2	3	7
CRW_01603	5S_rRNA links to Rfam database...	0.74	0.59	0.92	22	7116	5	0	2	3	15
CRW_01605	5S_rRNA links to Rfam database...	0.90	0.86	0.94	32	7106	4	0	2	2	5
CRW_01606	5S_rRNA links to Rfam database...	0.85	0.76	0.97	28	7111	4	0	1	3	9
CRW_01608	5S_rRNA links to Rfam database...	0.90	0.86	0.94	32	8351	3	0	2	1	5
CRW_01616	5S_rRNA links to Rfam database...	0.94	0.89	1.00	33	7107	1	0	0	1	4
CRW_01617	5S_rRNA links to Rfam database...	0.90	0.86	0.94	32	7106	4	0	2	2	5
CRW_01620	5S_rRNA links to Rfam database...	0.97	0.95	1.00	35	6986	3	0	0	3	2
CRW_01621	5S_rRNA links to Rfam database...	0.74	0.59	0.92	22	7116	4	0	2	2	15
CRW_01623	5S_rRNA links to Rfam database...	0.89	0.84	0.94	31	7107	3	0	2	1	6
CRW_01625	5S_rRNA links to Rfam database...	0.68	0.59	0.79	22	7112	9	0	6	3	15
PDB_00012	mir-TAR links to Rfam database...	1.00	1.00	1.00	7	399	2	0	0	2	0
PDB_00070	tRNA links to Rfam database...	0.93	0.88	1.00	21	2829	0	0	0	0	3
PDB_00213	Gammaretro_CES links to Rfam database...	0.77	0.63	0.93	26	5022	2	0	2	0	15
PDB_00229	tRNA links to Rfam database...	0.93	0.87	1.00	20	2755	0	0	0	0	3
PDB_00327	tRNA links to Rfam database...	0.96	0.91	1.00	21	3060	0	0	0	0	2
PDB_00362	tRNA links to Rfam database...	0.98	0.95	1.00	21	2829	0	0	0	0	1
PDB_00402	tRNA links to Rfam database...	0.96	0.91	1.00	21	2754	0	0	0	0	2
PDB_00431	tRNA links to Rfam database...	0.95	0.90	1.00	18	2193	0	0	0	0	2
PDB_00474	tRNA links to Rfam database...	0.96	0.91	1.00	21	2680	0	0	0	0	2
PDB_00553	mir-TAR links to Rfam database...	0.53	0.36	0.80	4	460	1	0	1	0	7
PDB_00571	tRNA links to Rfam database...	0.87	0.80	0.95	20	3300	1	1	0	0	5
PDB_00667	tRNA links to Rfam database...	0.98	0.95	1.00	21	2829	0	0	0	0	1
PDB_00703	SSU_rRNA_bacteria links to Rfam database...	0.78	0.71	0.86	353	1073436	80	10	46	24	142
PDB_00741	Entero_5_CRE links to Rfam database...	0.72	0.53	1.00	9	694	0	0	0	0	8
PDB_00810	s2m links to Rfam database...	0.63	0.53	0.75	9	1069	4	0	3	1	8
PDB_00828	Purine links to Rfam database...	0.84	0.70	1.00	19	2466	0	0	0	0	8
PDB_00829	Purine links to Rfam database...	0.86	0.75	1.00	18	2260	0	0	0	0	6
PDB_00854	SSU_rRNA_bacteria links to Rfam database...	0.75	0.65	0.86	347	1500373	97	7	51	39	188
PDB_00876	HIV_FE links to Rfam database...	0.45	0.40	0.53	8	975	7	0	7	0	12
PDB_01002	tRNA links to Rfam database...	0.93	0.86	1.00	18	2757	2	0	0	2	3
PDB_01020	Purine links to Rfam database...	0.86	0.74	1.00	17	2261	1	0	0	1	6
PDB_01050	UnaL2 links to Rfam database...	0.68	0.46	1.00	6	624	2	0	0	2	7
PDB_01053	tRNA links to Rfam database...	1.00	1.00	1.00	16	1362	0	0	0	0	0
PDB_01073	SAM links to Rfam database...	0.80	0.65	1.00	22	4349	1	0	0	1	12
PDB_01088	SSU_rRNA_bacteria links to Rfam database...	0.73	0.62	0.86	341	1471072	93	2	55	36	206
PDB_01103	SSU_rRNA_bacteria links to Rfam database...	0.75	0.65	0.87	364	1606111	77	8	45	24	198
PDB_01105	SSU_rRNA_bacteria links to Rfam database...	0.76	0.67	0.87	360	1433555	85	3	53	29	180
PDB_01114	TPP links to Rfam database...	0.86	0.74	1.00	20	2830	0	0	0	0	7
PDB_01120	SSU_rRNA_bacteria links to Rfam database...	0.72	0.65	0.80	341	1204702	101	13	72	16	186
PDB_01152	HIV_FS2 links to Rfam database...	0.76	0.64	0.90	9	551	1	0	1	0	5
PDB_01236	ykoK links to Rfam database...	0.87	0.78	0.98	42	11585	4	0	1	3	12
PDB_01273	SSU_rRNA_bacteria links to Rfam database...	0.78	0.71	0.86	347	1117857	83	8	48	27	144
RFA_00389	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	2	0	0	2	1
RFA_00390	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	3	0	0	3	1
RFA_00391	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	2	0	0	2	1
RFA_00396	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	2	0	0	2	1
RFA_00402	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	2	0	0	2	1
RFA_00409	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	2	0	0	2	1
RFA_00416	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1471	2	0	0	2	1
RFA_00433	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00434	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	2	0	0	2	1
RFA_00436	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	1	0	0	1	1
RFA_00440	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1471	3	0	0	3	1
RFA_00442	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	2	0	0	2	1
RFA_00444	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1526	2	0	0	2	1
RFA_00583	Y_RNA links to Rfam database...	0.97	0.93	1.00	14	4936	0	0	0	0	1
RFA_00584	Y_RNA links to Rfam database...	0.93	0.87	1.00	13	2913	1	0	0	1	2
RFA_00585	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4836	0	0	0	0	0
RFA_00586	Y_RNA links to Rfam database...	0.97	0.93	1.00	14	3902	1	0	0	1	1
RFA_00587	Y_RNA links to Rfam database...	0.97	0.93	1.00	14	4837	0	0	0	0	1
RFA_00588	Y_RNA links to Rfam database...	0.97	0.93	1.00	14	4546	0	0	0	0	1
RFA_00589	Y_RNA links to Rfam database...	0.97	0.93	1.00	14	4357	3	0	0	3	1
RFA_00594	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	2760	1	0	0	1	0
RFA_00596	Y_RNA links to Rfam database...	0.93	0.87	1.00	13	5982	4	0	0	4	2
RFA_00599	Telomerase-vert links to Rfam database...	0.75	0.65	0.87	72	101392	18	0	11	7	39
RFA_00601	Telomerase-vert links to Rfam database...	0.75	0.66	0.85	75	99147	17	0	13	4	39
RFA_00602	Telomerase-vert links to Rfam database...	0.65	0.54	0.78	63	101394	21	0	18	3	53
RFA_00658	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	1128	0	0	0	0	14
RFA_00664	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	990	0	0	0	0	14
RFA_00667	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	990	0	0	0	0	14
RFA_00668	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	990	0	0	0	0	14
RFA_00672	Hammerhead_1 links to Rfam database...	0.55	0.31	1.00	4	899	0	0	0	0	9
RFA_00673	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	1128	0	0	0	0	14
RFA_00674	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	1128	0	0	0	0	14
RFA_00675	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	990	0	0	0	0	14
RFA_00677	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	990	0	0	0	0	14
RFA_00678	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	946	0	0	0	0	14
RFA_00680	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	1128	0	0	0	0	14
RFA_00704	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	990	0	0	0	0	14
RFA_00707	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	1035	0	0	0	0	14
RFA_00715	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	946	0	0	0	0	14
RFA_00717	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	903	0	0	0	0	14
RFA_00730	s2m links to Rfam database...	0.75	0.75	0.75	9	891	4	0	3	1	3
RFA_00731	s2m links to Rfam database...	0.91	0.83	1.00	10	893	0	0	0	0	2
RFA_00733	s2m links to Rfam database...	1.00	1.00	1.00	12	891	0	0	0	0	0
RFA_00734	s2m links to Rfam database...	0.75	0.75	0.75	9	891	4	0	3	1	3
RFA_00736	s2m links to Rfam database...	1.00	1.00	1.00	12	891	0	0	0	0	0
RFA_00737	s2m links to Rfam database...	0.75	0.75	0.75	9	891	4	0	3	1	3
RFA_00745	s2m links to Rfam database...	0.75	0.75	0.75	9	934	4	0	3	1	3
RFA_00749	s2m links to Rfam database...	0.75	0.75	0.75	9	891	4	0	3	1	3
RFA_00758	s2m links to Rfam database...	0.75	0.75	0.75	9	891	5	0	3	2	3
RFA_00762	s2m links to Rfam database...	1.00	1.00	1.00	12	891	0	0	0	0	0
RFA_00763	s2m links to Rfam database...	1.00	1.00	1.00	12	891	1	0	0	1	0
RFA_00764	s2m links to Rfam database...	1.00	1.00	1.00	12	891	0	0	0	0	0
RFA_00765	s2m links to Rfam database...	0.75	0.75	0.75	9	891	4	0	3	1	3
RFA_00786	Gammaretro_CES links to Rfam database...	0.68	0.63	0.74	20	5023	7	1	6	0	12
RFA_00791	Gammaretro_CES links to Rfam database...	0.68	0.63	0.74	20	5124	7	1	6	0	12
RFA_00792	Gammaretro_CES links to Rfam database...	0.68	0.63	0.74	20	5023	7	1	6	0	12
RFA_00801	Gammaretro_CES links to Rfam database...	0.68	0.63	0.74	20	5023	7	1	6	0	12
SPR_00007	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00009	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	1	0	0	1	0
SPR_00010	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00012	tRNA links to Rfam database...	0.97	0.95	1.00	19	2831	1	0	0	1	1
SPR_00013	tRNA links to Rfam database...	0.97	0.95	1.00	19	2831	1	0	0	1	1
SPR_00016	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00017	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00025	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	1	0	0	1	0
SPR_00026	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00027	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00036	tRNA links to Rfam database...	0.89	0.80	1.00	16	2759	1	0	0	1	4
SPR_00045	tRNA links to Rfam database...	0.88	0.86	0.90	19	2829	2	0	2	0	3
SPR_00064	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00065	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00066	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00068	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00070	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00074	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	1	0	0	1	0
SPR_00079	tRNA links to Rfam database...	0.89	0.79	1.00	15	2470	0	0	0	0	4
SPR_00086	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00087	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	1	0	0	1	0
SPR_00088	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	1	0	0	1	0
SPR_00089	tRNA links to Rfam database...	0.97	0.95	1.00	19	2831	1	0	0	1	1
SPR_00090	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	1	0	0	1	0
SPR_00091	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	1	0	0	1	0
SPR_00095	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00111	tRNA links to Rfam database...	1.00	1.00	1.00	21	2680	0	0	0	0	0
SPR_00112	tRNA links to Rfam database...	1.00	1.00	1.00	21	2680	0	0	0	0	0
SPR_00115	tRNA links to Rfam database...	1.00	1.00	1.00	21	2680	0	0	0	0	0
SPR_00117	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00139	tRNA links to Rfam database...	0.95	0.90	1.00	19	2907	0	0	0	0	2
SPR_00153	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00155	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00156	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00176	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	1	0	0	1	0
SPR_00177	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00178	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00191	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00200	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00224	tRNA links to Rfam database...	1.00	1.00	1.00	20	3721	0	0	0	0	0
SPR_00271	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00273	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00276	tRNA links to Rfam database...	0.98	0.95	1.00	20	2906	0	0	0	0	1
SPR_00277	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00294	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00295	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	0	0	0	0	0
SPR_00314	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00315	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00317	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	1	0	0	1	0
SPR_00318	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00321	tRNA links to Rfam database...	1.00	1.00	1.00	21	2982	0	0	0	0	0
SPR_00333	tRNA links to Rfam database...	0.98	0.95	1.00	20	2755	0	0	0	0	1
SPR_00352	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00353	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00357	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00358	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	1	0	0	1	0
SPR_00370	tRNA links to Rfam database...	0.95	0.90	1.00	19	2756	0	0	0	0	2
SPR_00386	tRNA links to Rfam database...	1.00	1.00	1.00	20	4166	0	0	0	0	0
SPR_00414	tRNA links to Rfam database...	1.00	1.00	1.00	21	3549	4	0	0	4	0
SPR_00415	tRNA links to Rfam database...	1.00	1.00	1.00	21	3549	4	0	0	4	0
SPR_00417	tRNA links to Rfam database...	0.95	0.91	1.00	20	3550	4	0	0	4	2
SPR_00418	tRNA links to Rfam database...	0.95	0.91	1.00	20	3550	4	0	0	4	2
SPR_00434	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00435	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00436	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00437	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	0	0	0	0	0
SPR_00438	tRNA links to Rfam database...	0.98	0.95	1.00	20	2755	0	0	0	0	1
SPR_00452	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00455	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00456	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00476	tRNA links to Rfam database...	0.98	0.95	1.00	20	2755	0	0	0	0	1
SPR_00479	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00482	tRNA links to Rfam database...	1.00	1.00	1.00	21	2680	0	0	0	0	0
SPR_00483	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00487	tRNA links to Rfam database...	0.88	0.86	0.90	19	2680	2	0	2	0	3
SPR_00493	tRNA links to Rfam database...	0.93	0.86	1.00	19	2756	0	0	0	0	3
SPR_00496	tRNA links to Rfam database...	0.98	0.95	1.00	20	2755	0	0	0	0	1
SPR_00497	tRNA links to Rfam database...	0.98	0.95	1.00	20	2755	0	0	0	0	1
SPR_00502	tRNA links to Rfam database...	0.98	0.95	1.00	20	2906	0	0	0	0	1
SPR_00504	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	0	0	0	0	0
SPR_00505	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00506	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00509	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00512	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00513	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00518	tRNA links to Rfam database...	0.97	0.95	1.00	19	2907	0	0	0	0	1
SPR_00548	tRNA links to Rfam database...	0.98	0.95	1.00	20	3383	0	0	0	0	1
SPR_00557	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00561	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00590	tRNA links to Rfam database...	1.00	1.00	1.00	20	2983	0	0	0	0	0
SPR_00593	tRNA links to Rfam database...	1.00	1.00	1.00	19	2756	2	0	0	2	0
SPR_00595	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	0	0	0	0	0
SPR_00598	tRNA links to Rfam database...	1.00	1.00	1.00	21	2982	0	0	0	0	0
SPR_00610	tRNA links to Rfam database...	0.90	0.81	1.00	17	2539	0	0	0	0	4
SPR_00620	tRNA links to Rfam database...	0.98	0.95	1.00	20	2983	0	0	0	0	1
SPR_00721	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00722	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	1	0	0	1	0
SPR_00758	tRNA links to Rfam database...	1.00	1.00	1.00	21	2982	0	0	0	0	0
SPR_00760	tRNA links to Rfam database...	1.00	1.00	1.00	21	3549	0	0	0	0	0
SPR_00777	tRNA links to Rfam database...	1.00	1.00	1.00	20	2608	1	0	0	1	0
SPR_00867	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00868	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00943	tRNA links to Rfam database...	1.00	1.00	1.00	20	2536	0	0	0	0	0
SPR_00957	tRNA links to Rfam database...	1.00	1.00	1.00	21	2982	0	0	0	0	0
SPR_01040	tRNA links to Rfam database...	0.98	0.95	1.00	20	2755	0	0	0	0	1
SPR_01088	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_01095	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_01106	tRNA links to Rfam database...	1.00	1.00	1.00	21	2535	0	0	0	0	0
SPR_01117	tRNA links to Rfam database...	0.98	0.95	1.00	20	2983	0	0	0	0	1
SPR_01157	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	0	0	0	0	0
SRP_00006	Metazoa_SRP links to Rfam database...	0.93	0.87	1.00	88	45665	3	0	0	3	13
SRP_00008	Bacteria_small_SRP links to Rfam database...	0.77	0.60	1.00	15	2911	0	0	0	0	10
SRP_00011	Plant_SRP links to Rfam database...	0.74	0.65	0.83	68	46278	17	0	14	3	36
SRP_00015	Plant_SRP links to Rfam database...	0.78	0.72	0.86	71	46277	20	0	12	8	28
SRP_00020	Bacteria_small_SRP links to Rfam database...	0.72	0.52	1.00	17	5548	0	0	0	0	16
SRP_00024	Bacteria_large_SRP links to Rfam database...	0.56	0.34	0.91	30	37642	3	0	3	0	57
SRP_00026	Bacteria_large_SRP links to Rfam database...	0.51	0.33	0.78	29	36819	9	4	4	1	59
SRP_00027	Bacteria_large_SRP links to Rfam database...	0.60	0.39	0.92	34	37091	3	0	3	0	53
SRP_00030	Bacteria_large_SRP links to Rfam database...	0.52	0.34	0.79	30	36818	8	4	4	0	58
SRP_00031	Bacteria_large_SRP links to Rfam database...	0.62	0.44	0.89	39	36271	6	0	5	1	50
SRP_00037	Bacteria_large_SRP links to Rfam database...	0.55	0.30	1.00	26	36559	0	0	0	0	61
SRP_00038	Bacteria_small_SRP links to Rfam database...	0.46	0.21	1.00	7	5043	0	0	0	0	26
SRP_00042	Bacteria_small_SRP links to Rfam database...	0.75	0.64	0.89	16	3987	3	1	1	1	9
SRP_00044	Bacteria_small_SRP links to Rfam database...	0.47	0.22	1.00	7	6098	0	0	0	0	25
SRP_00046	Bacteria_small_SRP links to Rfam database...	0.47	0.22	1.00	7	4746	0	0	0	0	25
SRP_00050	Metazoa_SRP links to Rfam database...	0.93	0.88	0.99	87	44762	4	0	1	3	12
SRP_00051	Bacteria_small_SRP links to Rfam database...	0.48	0.23	1.00	7	5453	0	0	0	0	23
SRP_00054	Bacteria_small_SRP links to Rfam database...	0.47	0.22	1.00	7	5558	0	0	0	0	25
SRP_00057	Bacteria_small_SRP links to Rfam database...	0.45	0.20	1.00	7	6321	0	0	0	0	28
SRP_00058	Bacteria_small_SRP links to Rfam database...	0.66	0.44	1.00	15	5763	0	0	0	0	19
SRP_00066	Metazoa_SRP links to Rfam database...	0.77	0.71	0.85	71	45367	17	2	11	4	29
SRP_00072	Bacteria_small_SRP links to Rfam database...	0.49	0.24	1.00	7	6321	0	0	0	0	22
SRP_00074	Bacteria_small_SRP links to Rfam database...	0.49	0.24	1.00	7	6548	0	0	0	0	22
SRP_00075	Bacteria_small_SRP links to Rfam database...	0.45	0.21	1.00	7	5558	0	0	0	0	27
SRP_00077	Bacteria_small_SRP links to Rfam database...	0.43	0.19	1.00	7	6663	0	0	0	0	30
SRP_00081	Bacteria_small_SRP links to Rfam database...	0.47	0.23	1.00	7	5558	0	0	0	0	24
SRP_00084	Bacteria_small_SRP links to Rfam database...	0.45	0.21	1.00	7	5453	0	0	0	0	27
SRP_00086	Metazoa_SRP links to Rfam database...	0.80	0.74	0.86	74	44167	14	5	7	2	26
SRP_00088	Bacteria_large_SRP links to Rfam database...	0.57	0.37	0.87	33	34153	5	0	5	0	56
SRP_00089	Bacteria_large_SRP links to Rfam database...	0.50	0.31	0.80	28	35743	7	3	4	0	62
SRP_00090	Bacteria_large_SRP links to Rfam database...	0.55	0.32	0.94	29	35480	2	0	2	0	61
SRP_00094	Bacteria_small_SRP links to Rfam database...	0.84	0.71	1.00	17	4078	0	0	0	0	7
SRP_00095	Bacteria_small_SRP links to Rfam database...	0.62	0.48	0.80	12	3990	3	2	1	0	13
SRP_00098	Bacteria_small_SRP links to Rfam database...	0.62	0.43	0.89	16	6423	2	1	1	0	21
SRP_00102	Metazoa_SRP links to Rfam database...	0.77	0.68	0.87	69	44472	13	1	9	3	32
SRP_00103	Metazoa_SRP links to Rfam database...	0.76	0.66	0.87	67	45374	12	1	9	2	35
SRP_00105	Bacteria_small_SRP links to Rfam database...	0.45	0.21	1.00	7	5558	0	0	0	0	27
SRP_00107	Bacteria_small_SRP links to Rfam database...	0.56	0.32	1.00	6	3649	0	0	0	0	13
SRP_00121	Bacteria_small_SRP links to Rfam database...	0.53	0.28	1.00	7	4271	0	0	0	0	18
SRP_00128	Bacteria_small_SRP links to Rfam database...	0.44	0.19	1.00	7	6779	0	0	0	0	29
SRP_00132	Bacteria_small_SRP links to Rfam database...	0.49	0.24	1.00	7	4844	0	0	0	0	22
SRP_00134	Bacteria_large_SRP links to Rfam database...	0.67	0.66	0.68	19	5967	13	0	9	4	10
SRP_00141	Bacteria_small_SRP links to Rfam database...	0.38	0.15	1.00	6	6322	1	0	0	1	35
SRP_00152	Plant_SRP links to Rfam database...	0.73	0.64	0.84	66	45674	16	5	8	3	37
SRP_00161	Bacteria_small_SRP links to Rfam database...	0.56	0.32	1.00	7	2843	0	0	0	0	15
SRP_00162	Bacteria_small_SRP links to Rfam database...	0.55	0.30	1.00	7	2919	0	0	0	0	16
SRP_00163	Bacteria_small_SRP links to Rfam database...	0.52	0.27	1.00	7	3479	0	0	0	0	19
SRP_00164	Bacteria_small_SRP links to Rfam database...	0.41	0.17	1.00	6	6897	0	0	0	0	29
SRP_00170	Bacteria_small_SRP links to Rfam database...	0.71	0.60	0.83	15	4077	5	1	2	2	10
SRP_00171	Metazoa_SRP links to Rfam database...	0.65	0.65	0.66	57	45364	38	6	24	8	31
SRP_00173	Bacteria_large_SRP links to Rfam database...	0.55	0.36	0.86	32	38189	6	0	5	1	58
SRP_00174	Bacteria_large_SRP links to Rfam database...	0.55	0.30	1.00	26	38755	0	0	0	0	60
SRP_00178	Plant_SRP links to Rfam database...	0.76	0.60	0.97	61	45690	3	0	2	1	41
SRP_00179	Plant_SRP links to Rfam database...	0.74	0.58	0.94	61	45991	7	0	4	3	44
SRP_00181	Plant_SRP links to Rfam database...	0.66	0.50	0.88	51	45998	9	0	7	2	51
SRP_00182	Plant_SRP links to Rfam database...	0.89	0.83	0.94	84	45967	7	0	5	2	17
SRP_00184	Plant_SRP links to Rfam database...	0.82	0.74	0.90	74	45974	11	0	8	3	26
SRP_00188	Plant_SRP links to Rfam database...	0.78	0.71	0.86	56	31060	10	0	9	1	23
SRP_00194	Bacteria_small_SRP links to Rfam database...	0.53	0.29	1.00	6	3234	0	0	0	0	15
SRP_00200	Bacteria_small_SRP links to Rfam database...	0.41	0.17	1.00	6	6897	0	0	0	0	30
SRP_00209	Bacteria_small_SRP links to Rfam database...	0.70	0.56	0.88	15	4639	3	1	1	1	12
SRP_00213	Bacteria_small_SRP links to Rfam database...	0.69	0.52	0.93	13	4172	1	0	1	0	12
SRP_00215	Bacteria_small_SRP links to Rfam database...	0.53	0.28	1.00	7	3233	0	0	0	0	18
SRP_00227	Bacteria_small_SRP links to Rfam database...	0.86	0.81	0.93	25	5124	5	1	1	3	6
SRP_00228	Metazoa_SRP links to Rfam database...	0.80	0.72	0.89	68	45375	16	0	8	8	27
SRP_00231	Bacteria_small_SRP links to Rfam database...	0.59	0.35	1.00	12	5448	0	0	0	0	22
SRP_00233	Bacteria_small_SRP links to Rfam database...	0.46	0.21	1.00	7	5144	0	0	0	0	26
SRP_00234	Bacteria_large_SRP links to Rfam database...	0.54	0.33	0.90	28	36284	4	0	3	1	58
SRP_00243	Bacteria_small_SRP links to Rfam database...	0.47	0.23	1.00	7	5144	0	0	0	0	24
SRP_00244	Bacteria_small_SRP links to Rfam database...	0.39	0.15	1.00	6	6897	1	0	0	1	33
SRP_00250	Bacteria_small_SRP links to Rfam database...	0.44	0.19	1.00	7	6779	0	0	0	0	29
SRP_00251	Bacteria_small_SRP links to Rfam database...	0.41	0.17	1.00	6	7015	1	0	0	1	30
SRP_00266	Bacteria_small_SRP links to Rfam database...	0.49	0.24	1.00	7	4649	0	0	0	0	22
SRP_00268	Bacteria_small_SRP links to Rfam database...	0.73	0.63	0.85	17	4166	3	1	2	0	10
SRP_00269	Bacteria_small_SRP links to Rfam database...	0.46	0.21	1.00	7	5043	0	0	0	0	26
SRP_00270	Bacteria_small_SRP links to Rfam database...	0.44	0.19	1.00	6	4650	1	0	0	1	25
SRP_00271	Bacteria_small_SRP links to Rfam database...	0.54	0.29	1.00	7	3233	0	0	0	0	17
SRP_00273	Bacteria_small_SRP links to Rfam database...	0.84	0.70	1.00	28	6758	0	0	0	0	12
SRP_00274	Bacteria_small_SRP links to Rfam database...	0.54	0.29	1.00	11	6892	0	0	0	0	27
SRP_00295	Bacteria_small_SRP links to Rfam database...	0.51	0.26	1.00	10	6893	1	0	0	1	28
SRP_00303	Bacteria_small_SRP links to Rfam database...	0.43	0.19	1.00	6	6664	1	0	0	1	26
SRP_00308	Bacteria_large_SRP links to Rfam database...	0.48	0.32	0.74	28	36277	10	4	6	0	60
SRP_00310	Bacteria_small_SRP links to Rfam database...	0.55	0.30	1.00	7	2919	0	0	0	0	16
SRP_00312	Bacteria_small_SRP links to Rfam database...	0.77	0.67	0.90	18	4166	3	1	1	1	9
SRP_00315	Bacteria_small_SRP links to Rfam database...	0.74	0.65	0.83	15	2908	3	0	3	0	8
SRP_00317	Metazoa_SRP links to Rfam database...	0.91	0.85	0.98	83	45065	7	0	2	5	15
SRP_00318	Bacteria_small_SRP links to Rfam database...	0.55	0.30	1.00	7	2996	0	0	0	0	16
SRP_00325	Bacteria_small_SRP links to Rfam database...	0.46	0.21	1.00	7	4364	0	0	0	0	26
SRP_00326	Bacteria_small_SRP links to Rfam database...	0.44	0.19	1.00	6	5044	1	0	0	1	25
SRP_00333	Bacteria_small_SRP links to Rfam database...	0.45	0.21	1.00	7	5144	0	0	0	0	27
SRP_00335	Bacteria_large_SRP links to Rfam database...	0.53	0.28	1.00	11	35234	0	0	0	0	28
SRP_00337	Bacteria_large_SRP links to Rfam database...	0.70	0.53	0.94	48	35460	4	0	3	1	43
SRP_00338	Bacteria_small_SRP links to Rfam database...	0.44	0.19	1.00	7	5453	0	0	0	0	29
SRP_00341	Bacteria_small_SRP links to Rfam database...	0.47	0.23	1.00	7	4746	0	0	0	0	24
SRP_00342	Bacteria_small_SRP links to Rfam database...	0.49	0.24	1.00	6	3999	0	0	0	0	19
SRP_00347	Metazoa_SRP links to Rfam database...	0.79	0.71	0.87	68	46587	18	1	9	8	28
SRP_00350	Bacteria_small_SRP links to Rfam database...	0.73	0.63	0.85	17	3896	3	1	2	0	10
SRP_00356	Bacteria_small_SRP links to Rfam database...	0.48	0.23	1.00	7	5043	0	0	0	0	23
SRP_00357	Bacteria_small_SRP links to Rfam database...	0.44	0.19	1.00	7	5349	0	0	0	0	29
SRP_00358	Bacteria_small_SRP links to Rfam database...	0.41	0.17	1.00	6	6322	0	0	0	0	29
SRP_00367	Bacteria_small_SRP links to Rfam database...	0.41	0.17	1.00	6	6780	0	0	0	0	29
SRP_00368	Metazoa_SRP links to Rfam database...	0.80	0.73	0.88	72	43874	14	1	9	4	26
SRP_00369	Bacteria_small_SRP links to Rfam database...	0.41	0.17	1.00	6	5772	0	0	0	0	29
SRP_00383	Bacteria_small_SRP links to Rfam database...	0.54	0.29	1.00	7	3233	0	0	0	0	17
TMR_00017	tmRNA links to Rfam database...	0.68	0.54	0.85	55	67096	14	0	10	4	47
TMR_00018	tmRNA links to Rfam database...	0.62	0.53	0.72	49	64552	23	7	12	4	43
TMR_00038	tmRNA links to Rfam database...	0.65	0.53	0.81	58	71181	14	4	10	0	52
TMR_00042	tmRNA links to Rfam database...	0.68	0.53	0.87	52	62775	9	1	7	1	46
TMR_00046	tmRNA links to Rfam database...	0.56	0.49	0.64	47	62761	28	4	23	1	49
TMR_00048	tmRNA links to Rfam database...	0.64	0.52	0.80	49	64919	13	5	7	1	46
TMR_00080	tmRNA links to Rfam database...	0.57	0.50	0.64	48	70425	33	8	19	6	48
TMR_00082	tmRNA links to Rfam database...	0.59	0.50	0.69	48	67826	28	11	11	6	48
TMR_00123	tmRNA links to Rfam database...	0.70	0.55	0.89	56	66367	12	1	6	5	45
TMR_00137	tmRNA links to Rfam database...	0.56	0.48	0.66	43	61010	24	11	11	2	46
TMR_00142	tmRNA links to Rfam database...	0.63	0.52	0.77	53	70807	22	4	12	6	49
TMR_00207	tmRNA links to Rfam database...	0.66	0.54	0.81	56	72321	19	7	6	6	47
TMR_00257	tmRNA links to Rfam database...	0.75	0.63	0.89	62	67091	15	4	4	7	36
TMR_00271	tmRNA links to Rfam database...	0.48	0.37	0.63	34	64207	26	5	15	6	57
TMR_00332	tmRNA links to Rfam database...	0.64	0.52	0.78	51	67096	19	1	13	5	48
TMR_00366	tmRNA links to Rfam database...	0.55	0.48	0.62	48	67819	29	8	21	0	52
TMR_00378	tmRNA links to Rfam database...	0.49	0.41	0.59	40	67828	29	8	20	1	57
TMR_00399	tmRNA links to Rfam database...	0.63	0.56	0.70	53	64904	27	6	17	4	41
TMR_00404	tmRNA links to Rfam database...	0.56	0.47	0.68	43	67465	20	3	17	0	49
TMR_00427	tmRNA links to Rfam database...	0.50	0.36	0.69	35	67477	16	7	9	0	62
TMR_00443	tmRNA links to Rfam database...	0.73	0.63	0.86	65	67085	15	6	5	4	39
TMR_00451	tmRNA links to Rfam database...	0.57	0.51	0.65	45	63477	30	10	14	6	44
TMR_00458	tmRNA links to Rfam database...	0.54	0.46	0.64	43	63479	28	8	16	4	50
TMR_00469	tmRNA links to Rfam database...	0.70	0.60	0.81	60	64546	14	7	7	0	40
TMR_00472	tmRNA links to Rfam database...	0.65	0.56	0.75	54	64548	19	8	10	1	43
TMR_00519	tmRNA links to Rfam database...	0.57	0.48	0.67	46	63121	25	7	16	2	49
TMR_00520	tmRNA links to Rfam database...	0.53	0.43	0.65	43	63124	27	8	15	4	56
TMR_00522	tmRNA links to Rfam database...	0.52	0.42	0.64	41	63126	27	6	17	4	56
TMR_00528	tmRNA links to Rfam database...	0.54	0.47	0.62	46	63116	34	9	19	6	51
TMR_00540	tmRNA links to Rfam database...	0.66	0.54	0.81	56	73467	17	5	8	4	48
TMR_00568	tmRNA links to Rfam database...	0.73	0.67	0.80	66	60644	22	3	13	6	33
TMR_00571	tmRNA links to Rfam database...	0.75	0.69	0.83	68	60644	20	3	11	6	31
TMR_00580	tmRNA links to Rfam database...	0.74	0.65	0.83	65	60648	19	1	12	6	35
TMR_00584	tmRNA links to Rfam database...	0.75	0.68	0.83	66	60995	17	2	12	3	31
TMR_00586	tmRNA links to Rfam database...	0.69	0.64	0.76	62	60993	26	8	12	6	35
TMR_00616	tmRNA links to Rfam database...	0.64	0.55	0.76	54	67090	17	7	10	0	45
TMR_00699	tmRNA links to Rfam database...	0.68	0.54	0.85	55	67096	15	1	9	5	47
TMR_00702	tmRNA links to Rfam database...	0.54	0.43	0.68	43	67098	24	2	18	4	57
TMR_00703	tmRNA links to Rfam database...	0.67	0.54	0.83	53	67464	15	1	10	4	46

^top

Performance of Sfold - scored lower in this pairwise comparison

1. Total counts & total scores for Sfold

Total Base Pair Counts
Total TP	33387
Total TN	119785190
Total FP	26651
Total FP CONTRA	3507
Total FP INCONS	19599
Total FP COMP	3545
Total FN	36847

Total Scores
MCC	0.530
Average MCC ± 95% Confidence Intervals	0.621 ± 0.018
Sensitivity	0.475
Positive Predictive Value	0.591
Nr of predictions	642

^top

2. Individual counts for Sfold [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00004	RNaseP_bact_a links to Rfam database...	0.74	0.66	0.83	64	47818	13	7	6	0	33
ASE_00005	RNaseP_bact_a links to Rfam database...	0.69	0.58	0.83	68	57888	18	0	14	4	49
ASE_00006	RNaseP_bact_a links to Rfam database...	0.73	0.62	0.85	58	47518	12	1	9	2	35
ASE_00007	RNaseP_bact_a links to Rfam database...	0.59	0.55	0.62	61	59587	42	1	36	5	49
ASE_00012	RNaseP_bact_a links to Rfam database...	0.66	0.54	0.80	66	73838	21	2	14	5	57
ASE_00018	RNaseP_bact_a links to Rfam database...	0.81	0.73	0.91	98	80493	11	0	10	1	36
ASE_00020	RNaseP_bact_a links to Rfam database...	0.58	0.52	0.66	65	73822	33	6	27	0	61
ASE_00021	RNaseP_bact_a links to Rfam database...	0.66	0.51	0.86	82	104101	18	0	13	5	78
ASE_00022	RNaseP_bact_b links to Rfam database...	0.50	0.46	0.54	57	82922	56	3	46	7	67
ASE_00028	RNaseP_bact_b links to Rfam database...	0.61	0.55	0.67	69	84563	43	1	33	9	57
ASE_00035	RNaseP_bact_a links to Rfam database...	0.35	0.28	0.45	33	70426	45	8	33	4	85
ASE_00037	RNaseP_bact_a links to Rfam database...	0.55	0.49	0.61	54	59252	34	0	34	0	56
ASE_00038	RNaseP_bact_a links to Rfam database...	0.54	0.53	0.55	54	53529	47	4	41	2	47
ASE_00040	RNaseP_bact_a links to Rfam database...	0.63	0.51	0.78	68	78916	23	1	18	4	65
ASE_00041	RNaseP_bact_a links to Rfam database...	0.56	0.52	0.62	56	57539	37	2	33	2	52
ASE_00042	RNaseP_bact_a links to Rfam database...	0.58	0.52	0.64	75	89983	43	3	39	1	70
ASE_00044	RNaseP_bact_a links to Rfam database...	0.73	0.70	0.78	73	54521	26	3	18	5	32
ASE_00045	RNaseP_bact_b links to Rfam database...	0.62	0.59	0.65	47	47206	33	7	18	8	33
ASE_00064	RNaseP_bact_a links to Rfam database...	0.52	0.44	0.61	39	45387	31	1	24	6	50
ASE_00068	RNaseP_bact_a links to Rfam database...	0.48	0.39	0.59	33	37619	24	2	21	1	52
ASE_00074	RNaseP_bact_a links to Rfam database...	0.60	0.57	0.64	68	67790	38	3	35	0	51
ASE_00075	RNaseP_bact_a links to Rfam database...	0.73	0.64	0.84	103	108689	23	2	17	4	59
ASE_00077	RNaseP_bact_a links to Rfam database...	0.57	0.49	0.66	42	45086	22	6	16	0	44
ASE_00078	RNaseP_bact_a links to Rfam database...	0.65	0.59	0.71	49	43002	21	1	19	1	34
ASE_00080	RNaseP_bact_a links to Rfam database...	0.49	0.46	0.52	57	71521	56	5	48	3	66
ASE_00081	RNaseP_bact_a links to Rfam database...	0.60	0.53	0.69	51	49696	24	0	23	1	46
ASE_00082	RNaseP_bact_a links to Rfam database...	0.73	0.61	0.87	71	70418	23	0	11	12	45
ASE_00083	RNaseP_bact_a links to Rfam database...	0.81	0.75	0.87	83	62386	17	0	12	5	27
ASE_00084	RNaseP_bact_a links to Rfam database...	0.75	0.69	0.81	68	53544	19	3	13	3	31
ASE_00087	RNaseP_bact_a links to Rfam database...	0.69	0.60	0.80	86	88303	22	3	18	1	58
ASE_00090	RNaseP_bact_a links to Rfam database...	0.66	0.58	0.74	59	55531	22	1	20	1	42
ASE_00092	RNaseP_bact_a links to Rfam database...	0.80	0.73	0.89	82	63454	12	3	7	2	31
ASE_00099	RNaseP_bact_a links to Rfam database...	0.51	0.50	0.53	60	64506	56	6	48	2	60
ASE_00104	RNaseP_bact_a links to Rfam database...	0.65	0.56	0.75	67	64172	24	2	20	2	52
ASE_00105	RNaseP_bact_a links to Rfam database...	0.45	0.40	0.52	44	64176	44	5	36	3	67
ASE_00107	RNaseP_bact_a links to Rfam database...	0.67	0.55	0.81	70	73067	17	0	16	1	57
ASE_00114	RNaseP_bact_b links to Rfam database...	0.38	0.32	0.45	25	45395	36	6	25	5	52
ASE_00115	RNaseP_bact_a links to Rfam database...	0.65	0.52	0.80	53	54549	19	0	13	6	48
ASE_00118	RNaseP_bact_a links to Rfam database...	0.52	0.46	0.59	47	60647	34	3	29	2	55
ASE_00119	RNaseP_bact_a links to Rfam database...	0.87	0.82	0.92	89	62738	9	1	7	1	19
ASE_00123	RNaseP_bact_a links to Rfam database...	0.34	0.28	0.41	24	38444	39	3	32	4	61
ASE_00125	RNaseP_bact_a links to Rfam database...	0.71	0.58	0.88	51	39282	7	0	7	0	37
ASE_00126	RNaseP_bact_a links to Rfam database...	0.83	0.79	0.88	65	40396	13	1	8	4	17
ASE_00128	RNaseP_bact_a links to Rfam database...	0.73	0.65	0.81	65	53221	21	1	14	6	35
ASE_00129	RNaseP_bact_a links to Rfam database...	0.51	0.47	0.56	52	62742	44	2	39	3	59
ASE_00131	RNaseP_bact_a links to Rfam database...	0.66	0.51	0.86	43	39290	16	0	7	9	42
ASE_00134	RNaseP_bact_a links to Rfam database...	0.36	0.33	0.40	31	50326	46	5	41	0	64
ASE_00135	RNaseP_bact_a links to Rfam database...	0.50	0.45	0.56	49	63103	42	0	38	4	60
ASE_00136	RNaseP_bact_a links to Rfam database...	0.70	0.61	0.81	56	48136	18	0	13	5	36
ASE_00137	RNaseP_bact_a links to Rfam database...	0.55	0.44	0.69	43	48454	22	1	18	3	55
ASE_00138	RNaseP_bact_a links to Rfam database...	0.53	0.52	0.54	42	40392	38	4	32	2	39
ASE_00140	RNaseP_bact_a links to Rfam database...	0.71	0.57	0.90	71	70797	8	2	6	0	54
ASE_00142	RNaseP_bact_a links to Rfam database...	0.64	0.54	0.76	66	67074	23	3	18	2	56
ASE_00146	RNaseP_bact_a links to Rfam database...	0.47	0.36	0.62	45	70803	29	1	27	1	79
ASE_00153	RNaseP_nuc links to Rfam database...	0.69	0.67	0.70	49	57560	61	2	19	40	24
ASE_00161	RNaseP_bact_b links to Rfam database...	0.28	0.29	0.28	25	53540	63	14	49	0	62
ASE_00163	RNaseP_bact_a links to Rfam database...	0.49	0.44	0.55	41	53226	43	5	29	9	52
ASE_00165	RNaseP_bact_a links to Rfam database...	0.60	0.56	0.63	57	52885	34	9	24	1	44
ASE_00170	RNaseP_bact_a links to Rfam database...	0.64	0.54	0.76	50	48762	19	2	14	3	43
ASE_00171	RNaseP_bact_a links to Rfam database...	0.61	0.60	0.62	56	48426	36	7	27	2	38
ASE_00172	RNaseP_bact_a links to Rfam database...	0.74	0.61	0.90	65	58924	7	2	5	0	41
ASE_00174	RNaseP_bact_a links to Rfam database...	0.47	0.44	0.49	48	60978	51	3	46	2	61
ASE_00175	RNaseP_bact_a links to Rfam database...	0.70	0.63	0.79	67	59946	22	3	15	4	40
ASE_00179	RNaseP_bact_a links to Rfam database...	0.64	0.65	0.63	55	44166	33	7	25	1	29
ASE_00180	RNaseP_bact_a links to Rfam database...	0.71	0.68	0.75	68	51269	29	2	21	6	32
ASE_00181	RNaseP_bact_a links to Rfam database...	0.55	0.54	0.56	57	57528	51	3	42	6	49
ASE_00182	RNaseP_bact_a links to Rfam database...	0.53	0.49	0.57	67	84137	51	3	48	0	69
ASE_00183	RNaseP_bact_a links to Rfam database...	0.73	0.71	0.75	80	61319	30	0	26	4	33
ASE_00184	RNaseP_bact_a links to Rfam database...	0.69	0.63	0.76	64	54531	21	3	17	1	38
ASE_00185	RNaseP_bact_a links to Rfam database...	0.77	0.70	0.86	89	73432	21	3	12	6	39
ASE_00186	RNaseP_bact_a links to Rfam database...	0.73	0.70	0.77	92	78884	33	3	24	6	40
ASE_00190	RNaseP_bact_b links to Rfam database...	0.65	0.46	0.93	41	45407	5	0	3	2	49
ASE_00197	RNaseP_bact_a links to Rfam database...	0.58	0.51	0.66	74	89141	44	1	37	6	71
ASE_00198	RNaseP_bact_a links to Rfam database...	0.63	0.62	0.64	63	52552	35	6	29	0	39
ASE_00203	RNaseP_bact_a links to Rfam database...	0.72	0.61	0.84	59	46595	11	4	7	0	37
ASE_00212	RNaseP_bact_a links to Rfam database...	0.73	0.68	0.79	100	93835	30	2	24	4	48
ASE_00214	RNaseP_bact_a links to Rfam database...	0.79	0.77	0.82	79	56184	22	3	14	5	24
ASE_00215	RNaseP_bact_a links to Rfam database...	0.55	0.51	0.60	50	48432	37	4	30	3	49
ASE_00216	RNaseP_bact_a links to Rfam database...	0.70	0.65	0.76	53	39270	17	5	12	0	29
ASE_00217	RNaseP_bact_a links to Rfam database...	0.44	0.34	0.57	31	40416	26	1	22	3	59
ASE_00221	RNaseP_bact_a links to Rfam database...	0.57	0.44	0.73	52	64549	22	1	18	3	65
ASE_00228	RNaseP_bact_a links to Rfam database...	0.69	0.62	0.78	53	46903	15	11	4	0	33
ASE_00229	RNaseP_bact_a links to Rfam database...	0.63	0.60	0.66	52	42407	28	8	19	1	35
ASE_00231	RNaseP_bact_a links to Rfam database...	0.64	0.64	0.66	61	47802	33	5	27	1	35
ASE_00232	RNaseP_bact_a links to Rfam database...	0.65	0.61	0.69	51	38429	25	3	20	2	33
ASE_00234	RNaseP_bact_a links to Rfam database...	0.56	0.45	0.69	58	75382	30	1	25	4	71
ASE_00238	RNaseP_bact_a links to Rfam database...	0.49	0.47	0.51	54	64155	56	1	51	4	60
ASE_00241	RNaseP_bact_a links to Rfam database...	0.66	0.49	0.88	43	43907	7	0	6	1	44
ASE_00242	RNaseP_bact_a links to Rfam database...	0.69	0.60	0.81	67	60992	18	0	16	2	45
ASE_00248	RNaseP_bact_a links to Rfam database...	0.62	0.54	0.70	62	62393	30	1	25	4	52
ASE_00254	RNaseP_bact_a links to Rfam database...	0.80	0.66	0.98	54	36801	1	0	1	0	28
ASE_00255	RNaseP_bact_a links to Rfam database...	0.72	0.66	0.78	86	74581	25	3	21	1	44
ASE_00257	RNaseP_bact_a links to Rfam database...	0.71	0.56	0.90	54	50980	6	0	6	0	43
ASE_00263	RNaseP_bact_a links to Rfam database...	0.69	0.63	0.77	75	70403	23	5	17	1	45
ASE_00267	RNaseP_bact_a links to Rfam database...	0.54	0.35	0.84	31	45113	10	0	6	4	57
ASE_00270	RNaseP_bact_a links to Rfam database...	0.68	0.66	0.69	85	72267	40	6	32	2	43
ASE_00274	RNaseP_bact_a links to Rfam database...	0.51	0.48	0.54	49	55521	41	8	33	0	54
ASE_00277	RNaseP_bact_a links to Rfam database...	0.46	0.44	0.48	40	48121	44	8	36	0	51
ASE_00279	RNaseP_bact_a links to Rfam database...	0.71	0.53	0.95	54	53244	4	0	3	1	47
ASE_00280	RNaseP_bact_a links to Rfam database...	0.65	0.57	0.75	56	51928	20	2	17	1	42
ASE_00281	RNaseP_bact_a links to Rfam database...	0.72	0.56	0.94	49	44499	9	0	3	6	39
ASE_00282	RNaseP_bact_a links to Rfam database...	0.55	0.47	0.64	60	77721	35	1	33	1	67
ASE_00283	RNaseP_bact_a links to Rfam database...	0.51	0.42	0.63	45	61704	30	3	24	3	62
ASE_00284	RNaseP_bact_a links to Rfam database...	0.64	0.61	0.67	66	58213	39	2	30	7	42
ASE_00285	RNaseP_bact_a links to Rfam database...	0.72	0.67	0.77	82	68900	32	0	24	8	40
ASE_00286	RNaseP_bact_a links to Rfam database...	0.44	0.42	0.46	39	46580	52	3	43	6	53
ASE_00287	RNaseP_bact_a links to Rfam database...	0.73	0.68	0.78	70	54856	26	2	18	6	33
ASE_00292	RNaseP_bact_a links to Rfam database...	0.68	0.61	0.76	84	81699	30	2	25	3	54
ASE_00294	RNaseP_bact_a links to Rfam database...	0.80	0.72	0.89	123	114343	17	2	13	2	48
ASE_00296	RNaseP_bact_a links to Rfam database...	0.24	0.22	0.27	32	91686	89	8	80	1	113
ASE_00297	RNaseP_bact_a links to Rfam database...	0.61	0.50	0.75	49	52910	16	1	15	0	49
ASE_00298	RNaseP_bact_a links to Rfam database...	0.61	0.52	0.70	59	67444	27	4	21	2	54
ASE_00305	RNaseP_bact_b links to Rfam database...	0.51	0.39	0.66	33	54565	22	1	16	5	52
ASE_00318	RNaseP_bact_b links to Rfam database...	0.64	0.56	0.74	66	80111	27	7	16	4	52
ASE_00321	RNaseP_bact_b links to Rfam database...	0.62	0.39	1.00	34	54581	0	0	0	0	54
ASE_00328	RNaseP_bact_b links to Rfam database...	0.45	0.41	0.48	46	72676	54	3	46	5	66
ASE_00332	RNaseP_bact_a links to Rfam database...	0.53	0.51	0.55	70	81683	58	2	55	1	68
ASE_00335	RNaseP_bact_b links to Rfam database...	0.55	0.45	0.68	52	75390	30	3	21	6	64
ASE_00340	RNaseP_bact_a links to Rfam database...	0.75	0.73	0.77	62	45975	25	6	13	6	23
ASE_00342	RNaseP_bact_a links to Rfam database...	0.66	0.57	0.78	65	62398	19	0	18	1	50
ASE_00353	RNaseP_bact_a links to Rfam database...	0.59	0.48	0.74	51	57901	20	2	16	2	56
ASE_00361	RNaseP_bact_a links to Rfam database...	0.50	0.47	0.53	60	75353	57	6	47	4	67
ASE_00362	RNaseP_bact_a links to Rfam database...	0.66	0.60	0.71	55	48128	25	3	19	3	36
ASE_00363	RNaseP_bact_a links to Rfam database...	0.57	0.54	0.60	51	51275	35	1	33	1	43
ASE_00364	RNaseP_bact_a links to Rfam database...	0.38	0.33	0.43	35	54204	47	4	42	1	70
ASE_00366	RNaseP_bact_a links to Rfam database...	0.58	0.59	0.57	58	58552	45	9	34	2	40
ASE_00367	RNaseP_bact_a links to Rfam database...	0.43	0.38	0.49	33	43004	34	4	30	0	53
ASE_00369	RNaseP_bact_a links to Rfam database...	0.75	0.68	0.82	73	55856	17	1	15	1	34
ASE_00370	RNaseP_bact_a links to Rfam database...	0.68	0.63	0.74	53	41833	20	1	18	1	31
ASE_00372	RNaseP_bact_a links to Rfam database...	0.73	0.69	0.77	69	51913	26	4	17	5	31
ASE_00374	RNaseP_bact_a links to Rfam database...	0.39	0.38	0.42	33	44771	46	10	36	0	55
ASE_00376	RNaseP_bact_a links to Rfam database...	0.57	0.54	0.60	57	56858	43	3	35	5	48
ASE_00377	RNaseP_bact_a links to Rfam database...	0.70	0.67	0.73	72	57531	33	4	23	6	35
ASE_00379	RNaseP_bact_a links to Rfam database...	0.67	0.55	0.82	49	45996	20	2	9	9	40
ASE_00382	RNaseP_bact_a links to Rfam database...	0.58	0.54	0.63	45	41833	30	6	21	3	39
ASE_00383	RNaseP_bact_a links to Rfam database...	0.58	0.53	0.63	56	54526	35	5	28	2	49
ASE_00384	RNaseP_bact_a links to Rfam database...	0.64	0.43	0.93	40	48473	7	0	3	4	52
ASE_00386	RNaseP_bact_a links to Rfam database...	0.57	0.53	0.61	51	50319	38	3	30	5	45
ASE_00387	RNaseP_bact_a links to Rfam database...	0.60	0.46	0.79	48	55884	17	1	12	4	56
ASE_00388	RNaseP_bact_a links to Rfam database...	0.72	0.67	0.78	60	45676	20	0	17	3	29
ASE_00390	RNaseP_bact_a links to Rfam database...	0.71	0.58	0.88	49	42139	15	2	5	8	36
ASE_00393	RNaseP_bact_a links to Rfam database...	0.50	0.41	0.60	38	47832	32	1	24	7	55
ASE_00394	RNaseP_bact_a links to Rfam database...	0.80	0.77	0.84	72	46885	17	2	12	3	21
ASE_00395	RNaseP_bact_a links to Rfam database...	0.81	0.70	0.94	59	41553	8	0	4	4	25
ASE_00396	RNaseP_bact_a links to Rfam database...	0.47	0.37	0.60	31	41564	25	1	20	4	52
ASE_00397	RNaseP_bact_a links to Rfam database...	0.46	0.41	0.52	43	54533	39	5	34	0	62
ASE_00398	RNaseP_bact_a links to Rfam database...	0.69	0.64	0.74	67	55855	25	1	22	2	37
ASE_00400	RNaseP_bact_a links to Rfam database...	0.74	0.67	0.82	71	57883	17	1	15	1	35
ASE_00401	RNaseP_bact_a links to Rfam database...	0.54	0.56	0.53	70	76897	61	10	51	0	56
ASE_00402	RNaseP_bact_a links to Rfam database...	0.64	0.45	0.90	38	42444	7	0	4	3	47
ASE_00403	RNaseP_bact_a links to Rfam database...	0.57	0.45	0.73	48	55879	18	1	17	0	59
ASE_00404	RNaseP_bact_a links to Rfam database...	0.62	0.54	0.71	46	43006	25	0	19	6	39
ASE_00406	RNaseP_bact_a links to Rfam database...	0.73	0.67	0.79	63	48748	21	6	11	4	31
ASE_00411	RNaseP_bact_a links to Rfam database...	0.29	0.27	0.32	24	49379	53	6	46	1	65
ASE_00412	RNaseP_bact_a links to Rfam database...	0.56	0.50	0.62	53	58225	33	8	25	0	52
ASE_00413	RNaseP_bact_a links to Rfam database...	0.43	0.42	0.44	34	44474	43	13	30	0	47
ASE_00415	RNaseP_bact_a links to Rfam database...	0.60	0.53	0.68	55	54865	28	4	22	2	48
ASE_00416	RNaseP_bact_a links to Rfam database...	0.70	0.67	0.73	85	77305	35	3	28	4	42
ASE_00419	RNaseP_bact_a links to Rfam database...	0.75	0.73	0.77	75	54849	26	4	18	4	28
ASE_00422	RNaseP_bact_a links to Rfam database...	0.69	0.63	0.77	59	46894	25	0	18	7	35
ASE_00423	RNaseP_bact_a links to Rfam database...	0.60	0.54	0.66	59	56864	32	4	26	2	50
ASE_00427	RNaseP_nuc links to Rfam database...	0.14	0.13	0.16	6	40718	39	8	23	8	40
ASE_00428	RNaseP_bact_a links to Rfam database...	0.61	0.40	0.94	50	76583	4	0	3	1	75
ASE_00430	RNaseP_bact_a links to Rfam database...	0.65	0.62	0.67	60	46882	35	5	24	6	37
ASE_00437	RNaseP_bact_a links to Rfam database...	0.40	0.39	0.42	52	79277	73	5	67	1	83
ASE_00441	RNaseP_bact_a links to Rfam database...	0.78	0.74	0.81	83	64159	25	3	16	6	29
ASE_00448	RNaseP_bact_a links to Rfam database...	0.23	0.22	0.24	25	64155	87	6	75	6	87
ASE_00451	RNaseP_bact_a links to Rfam database...	0.62	0.52	0.73	65	70787	24	2	22	0	60
CRW_00024	SSU_rRNA_archaea links to Rfam database...	0.80	0.77	0.83	352	1085176	112	13	60	39	106
CRW_00034	SSU_rRNA_bacteria links to Rfam database...	0.65	0.64	0.66	304	1141856	180	27	129	24	170
CRW_00048	SSU_rRNA_bacteria links to Rfam database...	0.50	0.45	0.54	213	1170824	198	17	161	20	257
CRW_00054	SSU_rRNA_bacteria links to Rfam database...	0.48	0.43	0.54	195	1107453	185	23	145	17	261
CRW_00059	SSU_rRNA_bacteria links to Rfam database...	0.54	0.49	0.60	232	1172361	169	19	134	16	241
CRW_00061	SSU_rRNA_bacteria links to Rfam database...	0.49	0.45	0.54	215	1181555	193	31	152	10	261
CRW_00068	SSU_rRNA_bacteria links to Rfam database...	0.48	0.43	0.53	196	1108938	184	19	152	13	261
CRW_00096	SSU_rRNA_bacteria links to Rfam database...	0.59	0.55	0.63	258	1178469	180	16	137	27	207
CRW_00140	SSU_rRNA_bacteria links to Rfam database...	0.66	0.60	0.73	280	1135893	125	10	95	20	183
CRW_00141	SSU_rRNA_bacteria links to Rfam database...	0.63	0.57	0.70	272	1201636	139	16	101	22	204
CRW_00150	SSU_rRNA_bacteria links to Rfam database...	0.40	0.37	0.44	171	1152531	233	30	189	14	295
CRW_00152	SSU_rRNA_bacteria links to Rfam database...	0.67	0.61	0.74	287	1180029	118	21	79	18	184
CRW_00166	SSU_rRNA_bacteria links to Rfam database...	0.54	0.47	0.61	221	1190832	160	15	128	17	247
CRW_00173	SSU_rRNA_bacteria links to Rfam database...	0.36	0.32	0.39	144	1082291	233	16	205	12	301
CRW_00177	SSU_rRNA_bacteria links to Rfam database...	0.45	0.41	0.50	195	1178491	206	27	167	12	278
CRW_00196	SSU_rRNA_bacteria links to Rfam database...	0.47	0.44	0.50	210	1207811	232	23	191	18	265
CRW_00230	SSU_rRNA_bacteria links to Rfam database...	0.61	0.53	0.70	254	1198565	129	7	100	22	224
CRW_00245	SSU_rRNA_bacteria links to Rfam database...	0.54	0.45	0.66	202	1106023	115	16	87	12	251
CRW_00248	SSU_rRNA_bacteria links to Rfam database...	0.58	0.57	0.59	274	1218677	223	21	169	33	210
CRW_00250	SSU_rRNA_bacteria links to Rfam database...	0.50	0.46	0.54	221	1198516	206	28	161	17	257
CRW_00256	SSU_rRNA_bacteria links to Rfam database...	0.37	0.33	0.42	155	1192370	232	35	180	17	313
CRW_00270	SSU_rRNA_bacteria links to Rfam database...	0.48	0.39	0.59	178	1111985	137	19	104	14	277
CRW_00271	SSU_rRNA_bacteria links to Rfam database...	0.49	0.43	0.57	198	1122402	170	32	119	19	264
CRW_00273	SSU_rRNA_bacteria links to Rfam database...	0.55	0.50	0.61	224	1085232	162	22	123	17	222
CRW_00275	SSU_rRNA_bacteria links to Rfam database...	0.58	0.47	0.73	213	1114978	98	14	66	18	244
CRW_00277	SSU_rRNA_bacteria links to Rfam database...	0.40	0.30	0.54	136	1110544	127	18	97	12	317
CRW_00278	SSU_rRNA_bacteria links to Rfam database...	0.51	0.37	0.70	166	1130018	88	6	66	16	284
CRW_00279	SSU_rRNA_bacteria links to Rfam database...	0.61	0.54	0.69	252	1180052	131	20	92	19	212
CRW_00280	SSU_rRNA_bacteria links to Rfam database...	0.60	0.55	0.66	250	1117881	149	21	108	20	203
CRW_00281	SSU_rRNA_bacteria links to Rfam database...	0.68	0.60	0.77	279	1144977	109	11	74	24	185
CRW_00284	SSU_rRNA_bacteria links to Rfam database...	0.42	0.33	0.53	149	1131480	147	20	111	16	307
CRW_00285	SSU_rRNA_bacteria links to Rfam database...	0.77	0.71	0.83	326	1117866	94	16	52	26	132
CRW_00289	SSU_rRNA_bacteria links to Rfam database...	0.59	0.51	0.68	241	1189298	141	19	95	27	235
CRW_00298	SSU_rRNA_eukarya links to Rfam database...	0.19	0.17	0.21	84	1620496	355	58	262	35	410
CRW_00301	SSU_rRNA_eukarya links to Rfam database...	0.33	0.30	0.36	156	1762064	326	45	238	43	363
CRW_00306	SSU_rRNA_eukarya links to Rfam database...	0.21	0.19	0.24	88	1445476	332	57	229	46	374
CRW_00310	SSU_rRNA_eukarya links to Rfam database...	0.30	0.26	0.35	138	1805554	298	56	202	40	383
CRW_00326	SSU_rRNA_eukarya links to Rfam database...	0.46	0.37	0.56	187	1627778	175	32	113	30	315
CRW_00330	SSU_rRNA_eukarya links to Rfam database...	0.34	0.28	0.41	145	1988661	279	50	159	70	372
CRW_00332	SSU_rRNA_eukarya links to Rfam database...	0.22	0.21	0.24	102	1769589	370	75	255	40	375
CRW_00333	SSU_rRNA_eukarya links to Rfam database...	0.30	0.30	0.31	153	1891989	400	68	275	57	361
CRW_00345	SSU_rRNA_eukarya links to Rfam database...	0.40	0.35	0.45	173	1586487	244	36	175	33	325
CRW_00346	SSU_rRNA_eukarya links to Rfam database...	0.34	0.32	0.36	161	1584648	319	58	223	38	340
CRW_00348	SSU_rRNA_eukarya links to Rfam database...	0.32	0.26	0.40	129	1615184	223	34	156	33	374
CRW_00358	SSU_rRNA_eukarya links to Rfam database...	0.38	0.33	0.43	166	1674980	241	44	175	22	341
CRW_00366	SSU_rRNA_eukarya links to Rfam database...	0.36	0.35	0.36	169	1579286	334	74	224	36	313
CRW_00370	SSU_rRNA_eukarya links to Rfam database...	0.34	0.32	0.36	160	1640327	325	54	225	46	346
CRW_00371	SSU_rRNA_eukarya links to Rfam database...	0.38	0.34	0.42	171	1611504	271	50	185	36	325
CRW_00372	SSU_rRNA_eukarya links to Rfam database...	0.39	0.35	0.45	172	1625925	245	34	175	36	326
CRW_00379	SSU_rRNA_eukarya links to Rfam database...	0.44	0.34	0.58	183	2126636	205	17	117	71	351
CRW_00386	SSU_rRNA_eukarya links to Rfam database...	0.29	0.27	0.31	138	1750806	345	60	252	33	377
CRW_00403	SSU_rRNA_eukarya links to Rfam database...	0.31	0.30	0.32	137	1606104	362	58	229	75	327
CRW_00411	SSU_rRNA_eukarya links to Rfam database...	0.39	0.32	0.47	157	1615171	217	28	147	42	339
CRW_00414	SSU_rRNA_eukarya links to Rfam database...	0.33	0.29	0.38	146	1665840	278	40	199	39	349
CRW_00466	SSU_rRNA_bacteria links to Rfam database...	0.57	0.54	0.61	247	1116358	185	18	142	25	211
CRW_00548	5S_rRNA links to Rfam database...	0.83	0.76	0.91	29	7349	5	0	3	2	9
CRW_00552	5S_rRNA links to Rfam database...	0.75	0.59	0.96	23	7116	3	0	1	2	16
CRW_00555	5S_rRNA links to Rfam database...	0.74	0.55	1.00	22	7604	0	0	0	0	18
CRW_00567	5S_rRNA links to Rfam database...	0.47	0.35	0.64	14	7481	10	0	8	2	26
CRW_00570	5S_rRNA links to Rfam database...	0.88	0.89	0.87	33	6865	8	0	5	3	4
CRW_00573	5S_rRNA links to Rfam database...	0.28	0.25	0.31	10	7108	22	0	22	0	30
CRW_00589	SSU_rRNA_bacteria links to Rfam database...	0.31	0.26	0.36	116	1094139	220	19	186	15	329
CRW_00590	SSU_rRNA_bacteria links to Rfam database...	0.58	0.40	0.84	179	1119542	50	5	30	15	273
CRW_00591	SSU_rRNA_bacteria links to Rfam database...	0.60	0.56	0.65	248	1098523	153	22	110	21	198
CRW_00598	SSU_rRNA_eukarya links to Rfam database...	0.35	0.34	0.37	165	1665773	333	62	225	46	326
CRW_00758	SSU_rRNA_eukarya links to Rfam database...	0.34	0.30	0.38	147	1640380	287	42	197	48	336
CRW_00759	SSU_rRNA_eukarya links to Rfam database...	0.23	0.22	0.25	105	1636722	354	42	276	36	376
CRW_00760	SSU_rRNA_eukarya links to Rfam database...	0.33	0.27	0.39	133	1638613	257	32	177	48	353
CRW_00772	SSU_rRNA_bacteria links to Rfam database...	0.30	0.27	0.34	108	945681	233	27	184	22	296
CRW_00789	SSU_rRNA_bacteria links to Rfam database...	0.40	0.34	0.46	152	1137458	193	30	146	17	295
CRW_00795	SSU_rRNA_bacteria links to Rfam database...	0.19	0.17	0.20	68	1152586	311	44	223	44	326
CRW_00849	SSU_rRNA_bacteria links to Rfam database...	0.50	0.48	0.52	227	1117826	230	18	189	23	243
CRW_00997	SSU_rRNA_bacteria links to Rfam database...	0.59	0.52	0.66	241	1135913	144	19	105	20	223
CRW_01153	SSU_rRNA_eukarya links to Rfam database...	0.37	0.30	0.45	152	1606193	221	35	148	38	351
CRW_01171	SSU_rRNA_eukarya links to Rfam database...	0.33	0.29	0.38	149	1593608	285	55	193	37	357
CRW_01300	SSU_rRNA_eukarya links to Rfam database...	0.39	0.34	0.45	175	1693327	254	42	176	36	340
CRW_01484	5S_rRNA links to Rfam database...	0.24	0.18	0.33	7	7482	15	2	12	1	32
CRW_01485	5S_rRNA links to Rfam database...	0.19	0.18	0.20	7	7468	28	2	26	0	32
CRW_01487	5S_rRNA links to Rfam database...	0.00	0.00	0.00	0	7477	26	3	23	0	41
CRW_01489	5S_rRNA links to Rfam database...	0.82	0.74	0.91	29	7471	5	0	3	2	10
CRW_01491	5S_rRNA links to Rfam database...	0.62	0.47	0.83	20	8361	5	0	4	1	23
CRW_01492	5S_rRNA links to Rfam database...	0.76	0.74	0.78	31	7586	13	0	9	4	11
CRW_01494	5S_rRNA links to Rfam database...	0.74	0.70	0.78	28	7104	9	0	8	1	12
CRW_01497	5S_rRNA links to Rfam database...	0.56	0.45	0.69	18	7114	10	0	8	2	22
CRW_01498	5S_rRNA links to Rfam database...	0.87	0.81	0.92	35	8090	5	0	3	2	8
CRW_01499	5S_rRNA links to Rfam database...	0.55	0.54	0.56	22	7962	18	3	14	1	19
CRW_01500	5S_rRNA links to Rfam database...	0.86	0.79	0.94	30	7718	5	0	2	3	8
CRW_01501	5S_rRNA links to Rfam database...	0.86	0.84	0.88	38	8472	8	0	5	3	7
CRW_01508	5S_rRNA links to Rfam database...	0.90	0.86	0.95	36	7963	8	0	2	6	6
CRW_01532	5S_rRNA links to Rfam database...	0.79	0.76	0.82	28	7106	12	0	6	6	9
CRW_01533	5S_rRNA links to Rfam database...	0.82	0.78	0.85	29	7106	11	0	5	6	8
CRW_01534	5S_rRNA links to Rfam database...	0.80	0.78	0.83	29	7105	11	0	6	5	8
CRW_01535	5S_rRNA links to Rfam database...	0.84	0.78	0.91	29	7108	7	0	3	4	8
CRW_01536	5S_rRNA links to Rfam database...	0.81	0.73	0.90	27	6991	4	0	3	1	10
CRW_01537	5S_rRNA links to Rfam database...	0.77	0.70	0.84	26	7109	11	0	5	6	11
CRW_01539	5S_rRNA links to Rfam database...	0.83	0.76	0.90	28	7109	9	0	3	6	9
CRW_01540	5S_rRNA links to Rfam database...	0.63	0.59	0.67	22	7107	15	0	11	4	15
CRW_01541	5S_rRNA links to Rfam database...	0.90	0.81	1.00	30	7110	1	0	0	1	7
CRW_01542	5S_rRNA links to Rfam database...	0.87	0.84	0.91	31	7106	7	0	3	4	6
CRW_01544	5S_rRNA links to Rfam database...	0.79	0.76	0.82	28	7106	7	0	6	1	9
CRW_01548	5S_rRNA links to Rfam database...	0.80	0.76	0.85	28	6988	8	0	5	3	9
CRW_01555	5S_rRNA links to Rfam database...	0.80	0.76	0.85	28	9012	11	0	5	6	9
CRW_01556	5S_rRNA links to Rfam database...	0.69	0.68	0.71	25	7105	14	0	10	4	12
CRW_01557	5S_rRNA links to Rfam database...	0.80	0.78	0.83	29	7105	10	0	6	4	8
CRW_01559	5S_rRNA links to Rfam database...	0.79	0.78	0.81	29	7224	14	0	7	7	8
CRW_01562	5S_rRNA links to Rfam database...	0.86	0.81	0.91	30	7107	4	0	3	1	7
CRW_01563	5S_rRNA links to Rfam database...	0.65	0.51	0.83	19	6880	5	1	3	1	18
CRW_01566	5S_rRNA links to Rfam database...	0.75	0.73	0.77	27	7105	8	0	8	0	10
CRW_01568	5S_rRNA links to Rfam database...	0.80	0.78	0.83	29	7105	11	0	6	5	8
CRW_01569	5S_rRNA links to Rfam database...	0.82	0.78	0.85	29	7106	8	0	5	3	8
CRW_01570	5S_rRNA links to Rfam database...	0.84	0.78	0.91	29	7108	10	0	3	7	8
CRW_01572	5S_rRNA links to Rfam database...	0.31	0.24	0.39	9	6998	14	4	10	0	28
CRW_01573	5S_rRNA links to Rfam database...	0.82	0.78	0.85	29	7226	7	0	5	2	8
CRW_01578	5S_rRNA links to Rfam database...	0.84	0.78	0.91	29	7108	7	0	3	4	8
CRW_01580	5S_rRNA links to Rfam database...	0.69	0.59	0.81	22	7113	9	0	5	4	15
CRW_01581	5S_rRNA links to Rfam database...	0.31	0.27	0.37	10	7113	17	0	17	0	27
CRW_01583	5S_rRNA links to Rfam database...	0.80	0.76	0.85	28	7107	8	0	5	3	9
CRW_01584	5S_rRNA links to Rfam database...	0.90	0.89	0.92	33	7104	7	0	3	4	4
CRW_01590	5S_rRNA links to Rfam database...	0.66	0.43	1.00	16	7124	0	0	0	0	21
CRW_01593	5S_rRNA links to Rfam database...	0.82	0.78	0.85	29	7106	10	0	5	5	8
CRW_01595	5S_rRNA links to Rfam database...	0.77	0.73	0.82	27	8482	9	0	6	3	10
CRW_01599	5S_rRNA links to Rfam database...	0.77	0.73	0.82	27	7107	8	0	6	2	10
CRW_01603	5S_rRNA links to Rfam database...	0.84	0.78	0.91	29	7108	6	0	3	3	8
CRW_01605	5S_rRNA links to Rfam database...	0.75	0.70	0.81	26	7108	10	0	6	4	11
CRW_01606	5S_rRNA links to Rfam database...	0.72	0.65	0.80	24	7110	7	0	6	1	13
CRW_01608	5S_rRNA links to Rfam database...	0.52	0.46	0.59	17	8356	12	0	12	0	20
CRW_01616	5S_rRNA links to Rfam database...	0.82	0.78	0.85	29	7106	11	0	5	6	8
CRW_01617	5S_rRNA links to Rfam database...	0.92	0.89	0.94	33	7105	6	0	2	4	4
CRW_01620	5S_rRNA links to Rfam database...	0.89	0.89	0.89	33	6984	5	0	4	1	4
CRW_01621	5S_rRNA links to Rfam database...	0.73	0.70	0.76	26	7106	9	0	8	1	11
CRW_01623	5S_rRNA links to Rfam database...	0.87	0.81	0.94	30	7108	3	0	2	1	7
CRW_01625	5S_rRNA links to Rfam database...	0.82	0.81	0.83	30	7104	9	0	6	3	7
PDB_00012	mir-TAR links to Rfam database...	1.00	1.00	1.00	7	399	3	0	0	3	0
PDB_00070	tRNA links to Rfam database...	0.68	0.67	0.70	16	2827	7	1	6	0	8
PDB_00213	Gammaretro_CES links to Rfam database...	0.94	0.88	1.00	36	5014	0	0	0	0	5
PDB_00229	tRNA links to Rfam database...	0.44	0.43	0.45	10	2753	12	3	9	0	13
PDB_00327	tRNA links to Rfam database...	0.57	0.52	0.63	12	3062	7	0	7	0	11
PDB_00362	tRNA links to Rfam database...	0.95	0.91	1.00	20	2830	1	0	0	1	2
PDB_00402	tRNA links to Rfam database...	0.28	0.30	0.27	7	2749	19	1	18	0	16
PDB_00431	tRNA links to Rfam database...	0.74	0.55	1.00	11	2200	1	0	0	1	9
PDB_00474	tRNA links to Rfam database...	0.96	0.91	1.00	21	2680	0	0	0	0	2
PDB_00553	mir-TAR links to Rfam database...	1.00	1.00	1.00	11	454	0	0	0	0	0
PDB_00571	tRNA links to Rfam database...	0.21	0.20	0.24	5	3300	16	6	10	0	20
PDB_00667	tRNA links to Rfam database...	0.71	0.68	0.75	15	2830	7	4	1	2	7
PDB_00703	SSU_rRNA_bacteria links to Rfam database...	0.52	0.46	0.58	229	1073451	189	12	153	24	266
PDB_00741	Entero_5_CRE links to Rfam database...	0.87	0.76	1.00	13	690	0	0	0	0	4
PDB_00810	s2m links to Rfam database...	0.76	0.59	1.00	10	1071	0	0	0	0	7
PDB_00828	Purine links to Rfam database...	0.88	0.78	1.00	21	2464	0	0	0	0	6
PDB_00829	Purine links to Rfam database...	0.86	0.75	1.00	18	2260	0	0	0	0	6
PDB_00854	SSU_rRNA_bacteria links to Rfam database...	0.54	0.49	0.60	263	1500337	220	22	156	42	272
PDB_00876	HIV_FE links to Rfam database...	0.95	0.90	1.00	18	972	0	0	0	0	2
PDB_01002	tRNA links to Rfam database...	0.95	0.90	1.00	19	2756	2	0	0	2	2
PDB_01020	Purine links to Rfam database...	0.86	0.74	1.00	17	2261	1	0	0	1	6
PDB_01050	UnaL2 links to Rfam database...	0.96	0.92	1.00	12	618	2	0	0	2	1
PDB_01053	tRNA links to Rfam database...	1.00	1.00	1.00	16	1362	0	0	0	0	0
PDB_01073	SAM links to Rfam database...	0.80	0.65	1.00	22	4349	1	0	0	1	12
PDB_01088	SSU_rRNA_bacteria links to Rfam database...	0.38	0.32	0.47	173	1471098	222	33	166	23	374
PDB_01103	SSU_rRNA_bacteria links to Rfam database...	0.56	0.50	0.63	280	1606082	191	20	146	25	282
PDB_01105	SSU_rRNA_bacteria links to Rfam database...	0.60	0.53	0.67	288	1433540	169	14	129	26	252
PDB_01114	TPP links to Rfam database...	0.62	0.52	0.74	14	2831	5	0	5	0	13
PDB_01120	SSU_rRNA_bacteria links to Rfam database...	0.55	0.44	0.70	230	1204799	110	12	87	11	297
PDB_01152	HIV_FS2 links to Rfam database...	0.96	0.93	1.00	13	548	0	0	0	0	1
PDB_01236	ykoK links to Rfam database...	0.62	0.57	0.67	31	11582	18	0	15	3	23
PDB_01273	SSU_rRNA_bacteria links to Rfam database...	0.50	0.46	0.54	227	1117836	223	19	178	26	264
RFA_00389	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00390	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00391	Hammerhead_3 links to Rfam database...	0.93	0.87	1.00	13	1418	2	0	0	2	2
RFA_00396	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	1	0	0	1	1
RFA_00402	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	0	0	0	0	0
RFA_00409	Hammerhead_3 links to Rfam database...	0.77	0.60	1.00	9	1422	1	0	0	1	6
RFA_00416	Hammerhead_3 links to Rfam database...	0.93	0.93	0.93	14	1470	4	0	1	3	1
RFA_00433	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00434	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00436	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00440	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1470	2	0	0	2	0
RFA_00442	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00444	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1525	1	0	0	1	0
RFA_00583	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4935	10	0	0	10	0
RFA_00584	Y_RNA links to Rfam database...	0.87	0.87	0.87	13	2911	14	0	2	12	2
RFA_00585	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4836	2	0	0	2	0
RFA_00586	Y_RNA links to Rfam database...	0.89	0.80	1.00	12	3904	8	0	0	8	3
RFA_00587	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4836	8	0	0	8	0
RFA_00588	Y_RNA links to Rfam database...	0.93	0.87	1.00	13	4547	7	0	0	7	2
RFA_00589	Y_RNA links to Rfam database...	0.93	0.87	1.00	13	4358	17	0	0	17	2
RFA_00594	Y_RNA links to Rfam database...	0.93	0.87	1.00	13	2762	10	0	0	10	2
RFA_00596	Y_RNA links to Rfam database...	0.00	0.00	0.00	0	5985	19	4	6	9	15
RFA_00599	Telomerase-vert links to Rfam database...	0.69	0.68	0.70	75	101368	52	8	24	20	36
RFA_00601	Telomerase-vert links to Rfam database...	0.27	0.21	0.35	24	99167	52	9	35	8	90
RFA_00602	Telomerase-vert links to Rfam database...	0.54	0.53	0.55	62	101363	68	16	34	18	54
RFA_00658	Hammerhead_1 links to Rfam database...	0.59	0.50	0.70	7	1118	5	0	3	2	7
RFA_00664	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	980	11	0	10	1	14
RFA_00667	Hammerhead_1 links to Rfam database...	0.22	0.21	0.25	3	978	10	1	8	1	11
RFA_00668	Hammerhead_1 links to Rfam database...	0.41	0.43	0.40	6	975	9	0	9	0	8
RFA_00672	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	896	7	0	7	0	13
RFA_00673	Hammerhead_1 links to Rfam database...	0.42	0.36	0.50	5	1118	6	0	5	1	9
RFA_00674	Hammerhead_1 links to Rfam database...	0.66	0.64	0.69	9	1115	5	0	4	1	5
RFA_00675	Hammerhead_1 links to Rfam database...	0.29	0.29	0.31	4	977	9	1	8	0	10
RFA_00677	Hammerhead_1 links to Rfam database...	0.59	0.57	0.62	8	977	6	0	5	1	6
RFA_00678	Hammerhead_1 links to Rfam database...	0.53	0.29	1.00	4	942	0	0	0	0	10
RFA_00680	Hammerhead_1 links to Rfam database...	0.74	0.71	0.77	10	1115	6	0	3	3	4
RFA_00704	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	981	9	0	9	0	14
RFA_00707	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	1028	7	1	6	0	14
RFA_00715	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	937	9	0	9	0	14
RFA_00717	Hammerhead_1 links to Rfam database...	0.72	0.64	0.82	9	892	2	0	2	0	5
RFA_00730	s2m links to Rfam database...	0.69	0.67	0.73	8	892	4	1	2	1	4
RFA_00731	s2m links to Rfam database...	0.66	0.67	0.67	8	891	5	1	3	1	4
RFA_00733	s2m links to Rfam database...	0.66	0.67	0.67	8	891	5	1	3	1	4
RFA_00734	s2m links to Rfam database...	0.61	0.67	0.57	8	889	7	1	5	1	4
RFA_00736	s2m links to Rfam database...	0.66	0.67	0.67	8	891	5	1	3	1	4
RFA_00737	s2m links to Rfam database...	0.96	0.92	1.00	11	892	1	0	0	1	1
RFA_00745	s2m links to Rfam database...	0.91	0.83	1.00	10	936	1	0	0	1	2
RFA_00749	s2m links to Rfam database...	0.66	0.67	0.67	8	891	5	1	3	1	4
RFA_00758	s2m links to Rfam database...	0.76	0.58	1.00	7	896	0	0	0	0	5
RFA_00762	s2m links to Rfam database...	0.64	0.67	0.62	8	890	5	1	4	0	4
RFA_00763	s2m links to Rfam database...	0.91	0.83	1.00	10	893	0	0	0	0	2
RFA_00764	s2m links to Rfam database...	0.66	0.67	0.67	8	891	5	1	3	1	4
RFA_00765	s2m links to Rfam database...	1.00	1.00	1.00	12	891	1	0	0	1	0
RFA_00786	Gammaretro_CES links to Rfam database...	0.27	0.22	0.33	7	5029	14	1	13	0	25
RFA_00791	Gammaretro_CES links to Rfam database...	0.58	0.50	0.67	16	5127	8	1	7	0	16
RFA_00792	Gammaretro_CES links to Rfam database...	0.95	0.94	0.97	30	5019	2	0	1	1	2
RFA_00801	Gammaretro_CES links to Rfam database...	0.79	0.75	0.83	24	5021	6	0	5	1	8
SPR_00007	tRNA links to Rfam database...	0.87	0.76	1.00	16	2834	0	0	0	0	5
SPR_00009	tRNA links to Rfam database...	-0.01	0.00	0.00	0	2833	17	0	17	0	20
SPR_00010	tRNA links to Rfam database...	0.65	0.57	0.75	12	2834	4	0	4	0	9
SPR_00012	tRNA links to Rfam database...	0.26	0.25	0.28	5	2832	13	0	13	0	15
SPR_00013	tRNA links to Rfam database...	0.84	0.70	1.00	14	2836	0	0	0	0	6
SPR_00016	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00017	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00025	tRNA links to Rfam database...	0.39	0.35	0.44	7	2910	9	1	8	0	13
SPR_00026	tRNA links to Rfam database...	0.60	0.57	0.63	12	2907	7	0	7	0	9
SPR_00027	tRNA links to Rfam database...	0.58	0.33	1.00	7	2919	0	0	0	0	14
SPR_00036	tRNA links to Rfam database...	0.84	0.80	0.89	16	2757	3	0	2	1	4
SPR_00045	tRNA links to Rfam database...	0.95	0.95	0.95	21	2828	1	0	1	0	1
SPR_00064	tRNA links to Rfam database...	0.57	0.57	0.57	12	2829	9	2	7	0	9
SPR_00065	tRNA links to Rfam database...	0.51	0.52	0.50	11	2828	11	3	8	0	10
SPR_00066	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00068	tRNA links to Rfam database...	0.70	0.71	0.68	15	2828	7	3	4	0	6
SPR_00070	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	1	0	0	1	0
SPR_00074	tRNA links to Rfam database...	0.53	0.55	0.52	11	2829	11	3	7	1	9
SPR_00079	tRNA links to Rfam database...	0.92	0.84	1.00	16	2469	2	0	0	2	3
SPR_00086	tRNA links to Rfam database...	0.31	0.29	0.35	6	2833	11	2	9	0	15
SPR_00087	tRNA links to Rfam database...	0.45	0.20	1.00	4	2846	0	0	0	0	16
SPR_00088	tRNA links to Rfam database...	0.45	0.20	1.00	4	2846	0	0	0	0	16
SPR_00089	tRNA links to Rfam database...	0.47	0.35	0.64	7	2839	4	0	4	0	13
SPR_00090	tRNA links to Rfam database...	0.23	0.20	0.29	4	2836	10	2	8	0	16
SPR_00091	tRNA links to Rfam database...	0.63	0.40	1.00	8	2842	0	0	0	0	12
SPR_00095	tRNA links to Rfam database...	0.54	0.57	0.52	12	2827	11	4	7	0	9
SPR_00111	tRNA links to Rfam database...	0.61	0.57	0.67	12	2683	6	1	5	0	9
SPR_00112	tRNA links to Rfam database...	0.78	0.76	0.80	16	2681	6	3	1	2	5
SPR_00115	tRNA links to Rfam database...	0.90	0.81	1.00	17	2684	0	0	0	0	4
SPR_00117	tRNA links to Rfam database...	0.68	0.71	0.65	15	2827	8	1	7	0	6
SPR_00139	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	1	0	0	1	0
SPR_00153	tRNA links to Rfam database...	0.98	0.95	1.00	20	2906	0	0	0	0	1
SPR_00155	tRNA links to Rfam database...	0.52	0.52	0.52	11	2905	10	3	7	0	10
SPR_00156	tRNA links to Rfam database...	0.48	0.52	0.44	11	2901	14	5	9	0	10
SPR_00176	tRNA links to Rfam database...	0.50	0.55	0.46	11	2826	13	2	11	0	9
SPR_00177	tRNA links to Rfam database...	0.53	0.52	0.55	11	2830	9	0	9	0	10
SPR_00178	tRNA links to Rfam database...	0.84	0.71	1.00	15	2835	0	0	0	0	6
SPR_00191	tRNA links to Rfam database...	0.52	0.52	0.52	11	2829	10	2	8	0	10
SPR_00200	tRNA links to Rfam database...	0.71	0.71	0.71	15	2829	6	3	3	0	6
SPR_00224	tRNA links to Rfam database...	0.47	0.50	0.45	10	3719	17	5	7	5	10
SPR_00271	tRNA links to Rfam database...	0.51	0.57	0.46	12	2824	14	3	11	0	9
SPR_00273	tRNA links to Rfam database...	0.30	0.33	0.28	7	2825	18	2	16	0	14
SPR_00276	tRNA links to Rfam database...	0.98	0.95	1.00	20	2906	0	0	0	0	1
SPR_00277	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00294	tRNA links to Rfam database...	0.57	0.57	0.57	12	2829	9	2	7	0	9
SPR_00295	tRNA links to Rfam database...	0.98	0.95	1.00	20	2755	1	0	0	1	1
SPR_00314	tRNA links to Rfam database...	0.71	0.76	0.67	16	2902	11	0	8	3	5
SPR_00315	tRNA links to Rfam database...	0.90	0.81	1.00	17	2909	2	0	0	2	4
SPR_00317	tRNA links to Rfam database...	0.51	0.55	0.48	11	2903	12	6	6	0	9
SPR_00318	tRNA links to Rfam database...	0.98	0.95	1.00	20	2906	4	0	0	4	1
SPR_00321	tRNA links to Rfam database...	0.79	0.71	0.88	15	2986	2	1	1	0	6
SPR_00333	tRNA links to Rfam database...	0.45	0.48	0.43	10	2752	13	5	8	0	11
SPR_00352	tRNA links to Rfam database...	0.76	0.67	0.88	14	2910	2	1	1	0	7
SPR_00353	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	1	0	0	1	0
SPR_00357	tRNA links to Rfam database...	0.98	0.95	1.00	20	2906	0	0	0	0	1
SPR_00358	tRNA links to Rfam database...	0.54	0.60	0.50	12	2902	13	3	9	1	8
SPR_00370	tRNA links to Rfam database...	0.23	0.24	0.24	5	2754	16	3	13	0	16
SPR_00386	tRNA links to Rfam database...	0.40	0.35	0.47	7	4171	11	1	7	3	13
SPR_00414	tRNA links to Rfam database...	0.30	0.33	0.28	7	3545	22	6	12	4	14
SPR_00415	tRNA links to Rfam database...	0.38	0.33	0.44	7	3554	13	3	6	4	14
SPR_00417	tRNA links to Rfam database...	0.30	0.32	0.29	7	3546	21	6	11	4	15
SPR_00418	tRNA links to Rfam database...	0.30	0.32	0.29	7	3546	21	6	11	4	15
SPR_00434	tRNA links to Rfam database...	0.72	0.52	1.00	11	2839	0	0	0	0	10
SPR_00435	tRNA links to Rfam database...	0.73	0.71	0.75	15	2830	5	0	5	0	6
SPR_00436	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	2	0	0	2	1
SPR_00437	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	2	0	0	2	0
SPR_00438	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	0	0	0	0	0
SPR_00452	tRNA links to Rfam database...	0.53	0.57	0.50	12	2826	12	2	10	0	9
SPR_00455	tRNA links to Rfam database...	0.28	0.29	0.29	6	2829	15	5	10	0	15
SPR_00456	tRNA links to Rfam database...	0.54	0.57	0.52	12	2827	12	2	9	1	9
SPR_00476	tRNA links to Rfam database...	0.46	0.52	0.41	11	2748	17	3	13	1	10
SPR_00479	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00482	tRNA links to Rfam database...	0.64	0.52	0.79	11	2687	3	0	3	0	10
SPR_00483	tRNA links to Rfam database...	0.87	0.76	1.00	16	2834	1	0	0	1	5
SPR_00487	tRNA links to Rfam database...	0.60	0.55	0.67	12	2683	6	0	6	0	10
SPR_00493	tRNA links to Rfam database...	0.82	0.68	1.00	15	2760	0	0	0	0	7
SPR_00496	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	0	0	0	0	0
SPR_00497	tRNA links to Rfam database...	0.46	0.52	0.41	11	2748	17	3	13	1	10
SPR_00502	tRNA links to Rfam database...	0.70	0.57	0.86	12	2912	2	0	2	0	9
SPR_00504	tRNA links to Rfam database...	0.45	0.50	0.42	10	2826	14	5	9	0	10
SPR_00505	tRNA links to Rfam database...	0.89	0.80	1.00	16	2910	0	0	0	0	4
SPR_00506	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00509	tRNA links to Rfam database...	0.74	0.55	1.00	11	2915	0	0	0	0	9
SPR_00512	tRNA links to Rfam database...	0.97	0.95	1.00	19	2907	0	0	0	0	1
SPR_00513	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00518	tRNA links to Rfam database...	0.63	0.55	0.73	11	2911	4	0	4	0	9
SPR_00548	tRNA links to Rfam database...	0.53	0.57	0.50	12	3379	12	0	12	0	9
SPR_00557	tRNA links to Rfam database...	0.40	0.43	0.39	9	2827	15	1	13	1	12
SPR_00561	tRNA links to Rfam database...	0.40	0.43	0.38	9	2826	15	1	14	0	12
SPR_00590	tRNA links to Rfam database...	0.42	0.35	0.50	7	2989	7	2	5	0	13
SPR_00593	tRNA links to Rfam database...	0.76	0.63	0.92	12	2762	2	0	1	1	7
SPR_00595	tRNA links to Rfam database...	0.84	0.71	1.00	15	2760	0	0	0	0	6
SPR_00598	tRNA links to Rfam database...	0.54	0.57	0.52	12	2980	12	2	9	1	9
SPR_00610	tRNA links to Rfam database...	0.85	0.76	0.94	16	2539	2	0	1	1	5
SPR_00620	tRNA links to Rfam database...	0.57	0.57	0.57	12	2982	10	5	4	1	9
SPR_00721	tRNA links to Rfam database...	0.49	0.52	0.46	11	2902	13	3	10	0	10
SPR_00722	tRNA links to Rfam database...	0.87	0.75	1.00	15	2911	0	0	0	0	5
SPR_00758	tRNA links to Rfam database...	0.38	0.33	0.44	7	2987	9	2	7	0	14
SPR_00760	tRNA links to Rfam database...	0.77	0.71	0.83	15	3552	5	0	3	2	6
SPR_00777	tRNA links to Rfam database...	0.51	0.55	0.48	11	2605	12	5	7	0	9
SPR_00867	tRNA links to Rfam database...	0.52	0.57	0.48	12	2901	13	2	11	0	9
SPR_00868	tRNA links to Rfam database...	0.58	0.57	0.60	12	2906	9	0	8	1	9
SPR_00943	tRNA links to Rfam database...	0.82	0.80	0.84	16	2537	3	0	3	0	4
SPR_00957	tRNA links to Rfam database...	0.78	0.76	0.80	16	2983	5	0	4	1	5
SPR_01040	tRNA links to Rfam database...	0.83	0.81	0.85	17	2755	4	0	3	1	4
SPR_01088	tRNA links to Rfam database...	0.52	0.52	0.52	11	2905	12	2	8	2	10
SPR_01095	tRNA links to Rfam database...	0.76	0.76	0.76	16	2829	6	0	5	1	5
SPR_01106	tRNA links to Rfam database...	0.60	0.52	0.69	11	2540	5	2	3	0	10
SPR_01117	tRNA links to Rfam database...	0.30	0.33	0.28	7	2978	18	2	16	0	14
SPR_01157	tRNA links to Rfam database...	0.54	0.57	0.52	12	2752	12	0	11	1	9
SRP_00006	Metazoa_SRP links to Rfam database...	0.86	0.84	0.88	85	45656	15	3	9	3	16
SRP_00008	Bacteria_small_SRP links to Rfam database...	0.70	0.72	0.69	18	2900	9	0	8	1	7
SRP_00011	Plant_SRP links to Rfam database...	0.50	0.42	0.60	44	46287	30	0	29	1	60
SRP_00015	Plant_SRP links to Rfam database...	0.82	0.72	0.93	71	46284	11	0	5	6	28
SRP_00020	Bacteria_small_SRP links to Rfam database...	0.86	0.88	0.85	29	5531	5	1	4	0	4
SRP_00024	Bacteria_large_SRP links to Rfam database...	0.80	0.77	0.83	67	37594	14	4	10	0	20
SRP_00026	Bacteria_large_SRP links to Rfam database...	0.67	0.67	0.66	59	36767	38	2	28	8	29
SRP_00027	Bacteria_large_SRP links to Rfam database...	0.65	0.59	0.73	51	37058	19	3	16	0	36
SRP_00030	Bacteria_large_SRP links to Rfam database...	0.76	0.77	0.76	68	36766	24	4	18	2	20
SRP_00031	Bacteria_large_SRP links to Rfam database...	0.72	0.72	0.73	64	36227	25	2	22	1	25
SRP_00037	Bacteria_large_SRP links to Rfam database...	0.62	0.52	0.74	45	36524	16	1	15	0	42
SRP_00038	Bacteria_small_SRP links to Rfam database...	0.48	0.39	0.59	13	5028	9	0	9	0	20
SRP_00042	Bacteria_small_SRP links to Rfam database...	0.47	0.48	0.46	12	3979	16	1	13	2	13
SRP_00044	Bacteria_small_SRP links to Rfam database...	0.79	0.75	0.83	24	6076	6	1	4	1	8
SRP_00046	Bacteria_small_SRP links to Rfam database...	0.62	0.56	0.69	18	4727	9	0	8	1	14
SRP_00050	Metazoa_SRP links to Rfam database...	0.96	0.93	0.99	92	44757	4	0	1	3	7
SRP_00051	Bacteria_small_SRP links to Rfam database...	0.51	0.40	0.67	12	5442	8	0	6	2	18
SRP_00054	Bacteria_small_SRP links to Rfam database...	0.46	0.44	0.48	14	5536	15	0	15	0	18
SRP_00057	Bacteria_small_SRP links to Rfam database...	0.69	0.69	0.71	24	6294	11	2	8	1	11
SRP_00058	Bacteria_small_SRP links to Rfam database...	0.90	0.91	0.89	31	5743	8	1	3	4	3
SRP_00066	Metazoa_SRP links to Rfam database...	0.10	0.10	0.11	10	45363	78	8	70	0	90
SRP_00072	Bacteria_small_SRP links to Rfam database...	0.34	0.31	0.38	9	6304	16	1	14	1	20
SRP_00074	Bacteria_small_SRP links to Rfam database...	0.19	0.17	0.21	5	6531	23	2	17	4	24
SRP_00075	Bacteria_small_SRP links to Rfam database...	0.84	0.79	0.90	27	5535	5	0	3	2	7
SRP_00077	Bacteria_small_SRP links to Rfam database...	0.20	0.22	0.20	8	6630	32	4	28	0	29
SRP_00081	Bacteria_small_SRP links to Rfam database...	0.68	0.74	0.62	23	5528	14	1	13	0	8
SRP_00084	Bacteria_small_SRP links to Rfam database...	0.85	0.85	0.85	29	5426	5	1	4	0	5
SRP_00086	Metazoa_SRP links to Rfam database...	0.95	0.94	0.97	94	44156	6	0	3	3	6
SRP_00088	Bacteria_large_SRP links to Rfam database...	0.63	0.64	0.63	57	34100	34	3	31	0	32
SRP_00089	Bacteria_large_SRP links to Rfam database...	0.84	0.81	0.88	73	35695	10	1	9	0	17
SRP_00090	Bacteria_large_SRP links to Rfam database...	0.70	0.64	0.75	58	35434	21	1	18	2	32
SRP_00094	Bacteria_small_SRP links to Rfam database...	0.76	0.75	0.78	18	4072	5	1	4	0	6
SRP_00095	Bacteria_small_SRP links to Rfam database...	0.39	0.28	0.54	7	3992	6	1	5	0	18
SRP_00098	Bacteria_small_SRP links to Rfam database...	0.64	0.62	0.66	23	6406	13	1	11	1	14
SRP_00102	Metazoa_SRP links to Rfam database...	0.86	0.84	0.88	85	44454	14	1	11	2	16
SRP_00103	Metazoa_SRP links to Rfam database...	0.91	0.86	0.97	88	45360	3	0	3	0	14
SRP_00105	Bacteria_small_SRP links to Rfam database...	0.41	0.38	0.45	13	5536	16	3	13	0	21
SRP_00107	Bacteria_small_SRP links to Rfam database...	0.14	0.16	0.13	3	3631	23	6	15	2	16
SRP_00121	Bacteria_small_SRP links to Rfam database...	0.80	0.80	0.80	20	4253	6	0	5	1	5
SRP_00128	Bacteria_small_SRP links to Rfam database...	0.76	0.81	0.73	29	6746	12	1	10	1	7
SRP_00132	Bacteria_small_SRP links to Rfam database...	0.65	0.69	0.63	20	4819	15	0	12	3	9
SRP_00134	Bacteria_large_SRP links to Rfam database...	0.52	0.55	0.50	16	5963	21	3	13	5	13
SRP_00141	Bacteria_small_SRP links to Rfam database...	0.91	0.90	0.93	37	6288	4	1	2	1	4
SRP_00152	Plant_SRP links to Rfam database...	0.67	0.63	0.71	65	45661	28	1	26	1	38
SRP_00161	Bacteria_small_SRP links to Rfam database...	0.86	0.86	0.86	19	2828	3	0	3	0	3
SRP_00162	Bacteria_small_SRP links to Rfam database...	0.89	0.91	0.88	21	2902	4	0	3	1	2
SRP_00163	Bacteria_small_SRP links to Rfam database...	0.76	0.81	0.72	21	3457	8	2	6	0	5
SRP_00164	Bacteria_small_SRP links to Rfam database...	0.93	0.94	0.92	33	6867	4	1	2	1	2
SRP_00170	Bacteria_small_SRP links to Rfam database...	0.50	0.48	0.52	12	4072	12	0	11	1	13
SRP_00171	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	45353	98	15	83	0	88
SRP_00173	Bacteria_large_SRP links to Rfam database...	0.72	0.70	0.73	63	38140	26	1	22	3	27
SRP_00174	Bacteria_large_SRP links to Rfam database...	0.76	0.76	0.77	65	38697	25	4	15	6	21
SRP_00178	Plant_SRP links to Rfam database...	0.82	0.75	0.90	77	45667	11	1	8	2	25
SRP_00179	Plant_SRP links to Rfam database...	0.87	0.80	0.94	84	45967	9	1	4	4	21
SRP_00181	Plant_SRP links to Rfam database...	0.33	0.29	0.37	30	45974	52	1	51	0	72
SRP_00182	Plant_SRP links to Rfam database...	0.73	0.70	0.76	71	45963	24	3	19	2	30
SRP_00184	Plant_SRP links to Rfam database...	0.71	0.58	0.88	58	45990	12	0	8	4	42
SRP_00188	Plant_SRP links to Rfam database...	0.20	0.18	0.23	14	31064	47	4	43	0	65
SRP_00194	Bacteria_small_SRP links to Rfam database...	0.77	0.81	0.74	17	3217	6	0	6	0	4
SRP_00200	Bacteria_small_SRP links to Rfam database...	0.82	0.83	0.81	30	6866	8	1	6	1	6
SRP_00209	Bacteria_small_SRP links to Rfam database...	0.58	0.59	0.57	16	4628	13	0	12	1	11
SRP_00213	Bacteria_small_SRP links to Rfam database...	0.58	0.40	0.83	10	4174	2	1	1	0	15
SRP_00215	Bacteria_small_SRP links to Rfam database...	0.82	0.80	0.83	20	3216	4	0	4	0	5
SRP_00227	Bacteria_small_SRP links to Rfam database...	0.92	0.94	0.91	29	5119	3	1	2	0	2
SRP_00228	Metazoa_SRP links to Rfam database...	0.96	0.94	0.98	89	45360	10	0	2	8	6
SRP_00231	Bacteria_small_SRP links to Rfam database...	0.89	0.88	0.91	30	5427	3	1	2	0	4
SRP_00233	Bacteria_small_SRP links to Rfam database...	0.94	0.88	1.00	29	5122	0	0	0	0	4
SRP_00234	Bacteria_large_SRP links to Rfam database...	0.78	0.76	0.80	65	36234	21	1	15	5	21
SRP_00243	Bacteria_small_SRP links to Rfam database...	0.97	0.94	1.00	29	5122	1	0	0	1	2
SRP_00244	Bacteria_small_SRP links to Rfam database...	0.76	0.64	0.89	25	6875	3	1	2	0	14
SRP_00250	Bacteria_small_SRP links to Rfam database...	0.74	0.75	0.73	27	6749	13	1	9	3	9
SRP_00251	Bacteria_small_SRP links to Rfam database...	0.70	0.72	0.68	26	6983	12	1	11	0	10
SRP_00266	Bacteria_small_SRP links to Rfam database...	0.65	0.55	0.76	16	4635	6	0	5	1	13
SRP_00268	Bacteria_small_SRP links to Rfam database...	0.62	0.48	0.81	13	4170	3	1	2	0	14
SRP_00269	Bacteria_small_SRP links to Rfam database...	0.60	0.61	0.61	20	5017	13	3	10	0	13
SRP_00270	Bacteria_small_SRP links to Rfam database...	0.43	0.45	0.41	14	4622	20	2	18	0	17
SRP_00271	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	3218	22	3	19	0	24
SRP_00273	Bacteria_small_SRP links to Rfam database...	0.90	0.90	0.90	36	6746	6	1	3	2	4
SRP_00274	Bacteria_small_SRP links to Rfam database...	0.93	0.95	0.92	36	6864	4	1	2	1	2
SRP_00295	Bacteria_small_SRP links to Rfam database...	0.93	0.92	0.95	35	6866	4	1	1	2	3
SRP_00303	Bacteria_small_SRP links to Rfam database...	0.81	0.84	0.77	27	6635	8	1	7	0	5
SRP_00308	Bacteria_large_SRP links to Rfam database...	0.62	0.59	0.65	52	36235	30	8	20	2	36
SRP_00310	Bacteria_small_SRP links to Rfam database...	0.82	0.78	0.86	18	2905	4	0	3	1	5
SRP_00312	Bacteria_small_SRP links to Rfam database...	0.41	0.37	0.45	10	4164	12	1	11	0	17
SRP_00315	Bacteria_small_SRP links to Rfam database...	0.79	0.74	0.85	17	2906	3	0	3	0	6
SRP_00317	Metazoa_SRP links to Rfam database...	0.94	0.89	0.99	87	45062	9	0	1	8	11
SRP_00318	Bacteria_small_SRP links to Rfam database...	0.84	0.83	0.86	19	2981	3	0	3	0	4
SRP_00325	Bacteria_small_SRP links to Rfam database...	1.00	1.00	1.00	33	4338	0	0	0	0	0
SRP_00326	Bacteria_small_SRP links to Rfam database...	0.55	0.55	0.55	17	5019	14	3	11	0	14
SRP_00333	Bacteria_small_SRP links to Rfam database...	0.86	0.85	0.88	29	5118	4	0	4	0	5
SRP_00335	Bacteria_large_SRP links to Rfam database...	0.32	0.44	0.24	17	35173	76	26	29	21	22
SRP_00337	Bacteria_large_SRP links to Rfam database...	0.70	0.68	0.73	62	35426	25	2	21	2	29
SRP_00338	Bacteria_small_SRP links to Rfam database...	0.94	0.94	0.94	34	5424	2	0	2	0	2
SRP_00341	Bacteria_small_SRP links to Rfam database...	0.57	0.52	0.64	16	4728	9	0	9	0	15
SRP_00342	Bacteria_small_SRP links to Rfam database...	0.59	0.60	0.58	15	3979	16	1	10	5	10
SRP_00347	Metazoa_SRP links to Rfam database...	0.83	0.81	0.84	78	46572	20	4	11	5	18
SRP_00350	Bacteria_small_SRP links to Rfam database...	0.38	0.33	0.45	9	3896	11	1	10	0	18
SRP_00356	Bacteria_small_SRP links to Rfam database...	0.47	0.43	0.52	13	5025	12	4	8	0	17
SRP_00357	Bacteria_small_SRP links to Rfam database...	0.93	0.92	0.94	33	5321	3	1	1	1	3
SRP_00358	Bacteria_small_SRP links to Rfam database...	0.93	0.91	0.94	32	6294	3	1	1	1	3
SRP_00367	Bacteria_small_SRP links to Rfam database...	0.94	0.94	0.94	33	6751	2	1	1	0	2
SRP_00368	Metazoa_SRP links to Rfam database...	0.95	0.94	0.97	92	43861	9	0	3	6	6
SRP_00369	Bacteria_small_SRP links to Rfam database...	0.91	0.89	0.94	31	5745	2	1	1	0	4
SRP_00383	Bacteria_small_SRP links to Rfam database...	0.22	0.21	0.24	5	3219	16	3	13	0	19
TMR_00017	tmRNA links to Rfam database...	0.30	0.24	0.39	24	67100	43	5	32	6	78
TMR_00018	tmRNA links to Rfam database...	0.22	0.21	0.24	19	64542	63	15	44	4	73
TMR_00038	tmRNA links to Rfam database...	0.22	0.20	0.25	22	71166	68	9	56	3	88
TMR_00042	tmRNA links to Rfam database...	0.20	0.18	0.23	18	62757	63	8	52	3	80
TMR_00046	tmRNA links to Rfam database...	0.61	0.56	0.66	54	62753	34	4	24	6	42
TMR_00048	tmRNA links to Rfam database...	0.39	0.34	0.46	32	64911	46	2	35	9	63
TMR_00080	tmRNA links to Rfam database...	0.54	0.40	0.75	38	70449	13	3	10	0	58
TMR_00082	tmRNA links to Rfam database...	0.48	0.43	0.53	41	67819	38	11	25	2	55
TMR_00123	tmRNA links to Rfam database...	0.32	0.27	0.39	27	66360	48	7	36	5	74
TMR_00137	tmRNA links to Rfam database...	0.17	0.17	0.18	15	60992	78	7	61	10	74
TMR_00142	tmRNA links to Rfam database...	0.42	0.35	0.50	36	70804	43	5	31	7	66
TMR_00207	tmRNA links to Rfam database...	0.37	0.35	0.38	36	72296	65	3	55	7	67
TMR_00257	tmRNA links to Rfam database...	0.08	0.07	0.09	7	67080	78	7	67	4	91
TMR_00271	tmRNA links to Rfam database...	0.54	0.48	0.60	44	64188	33	6	23	4	47
TMR_00332	tmRNA links to Rfam database...	0.35	0.30	0.42	30	67089	47	8	34	5	69
TMR_00366	tmRNA links to Rfam database...	0.33	0.31	0.36	31	67809	68	11	45	12	69
TMR_00378	tmRNA links to Rfam database...	0.29	0.25	0.34	24	67826	54	7	39	8	73
TMR_00399	tmRNA links to Rfam database...	0.35	0.31	0.41	29	64909	43	16	26	1	65
TMR_00404	tmRNA links to Rfam database...	0.41	0.37	0.45	34	67453	52	15	26	11	58
TMR_00427	tmRNA links to Rfam database...	0.38	0.25	0.57	24	67486	24	0	18	6	73
TMR_00443	tmRNA links to Rfam database...	0.41	0.31	0.55	32	67103	35	5	21	9	72
TMR_00451	tmRNA links to Rfam database...	0.18	0.17	0.19	15	63465	66	13	53	0	74
TMR_00458	tmRNA links to Rfam database...	0.25	0.16	0.38	15	63507	32	4	20	8	78
TMR_00469	tmRNA links to Rfam database...	0.41	0.42	0.40	42	64516	62	11	51	0	58
TMR_00472	tmRNA links to Rfam database...	0.38	0.33	0.43	32	64546	45	12	30	3	65
TMR_00519	tmRNA links to Rfam database...	0.14	0.15	0.14	14	63089	97	15	72	10	81
TMR_00520	tmRNA links to Rfam database...	0.51	0.41	0.62	41	63124	35	7	18	10	58
TMR_00522	tmRNA links to Rfam database...	0.48	0.38	0.62	37	63130	32	9	14	9	60
TMR_00528	tmRNA links to Rfam database...	0.32	0.15	0.65	15	63167	18	3	5	10	82
TMR_00540	tmRNA links to Rfam database...	0.48	0.35	0.68	36	73483	17	2	15	0	68
TMR_00568	tmRNA links to Rfam database...	0.52	0.35	0.78	35	60681	18	0	10	8	64
TMR_00571	tmRNA links to Rfam database...	0.50	0.33	0.75	33	60682	18	2	9	7	66
TMR_00580	tmRNA links to Rfam database...	0.38	0.25	0.57	25	60682	24	3	16	5	75
TMR_00584	tmRNA links to Rfam database...	0.58	0.55	0.62	53	60990	38	7	25	6	44
TMR_00586	tmRNA links to Rfam database...	0.28	0.25	0.32	24	61001	54	12	38	4	73
TMR_00616	tmRNA links to Rfam database...	0.40	0.38	0.41	38	67068	60	10	45	5	61
TMR_00699	tmRNA links to Rfam database...	0.31	0.29	0.34	30	67072	61	6	53	2	72
TMR_00702	tmRNA links to Rfam database...	0.13	0.11	0.15	11	67090	64	6	54	4	89
TMR_00703	tmRNA links to Rfam database...	0.37	0.31	0.44	31	67457	44	7	33	4	68

^top

Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.

Table of contents:

Overview

Performance plots

Performance of RNAalifold(20) - scored higher in this pairwise comparison

1. Total counts & total scores for RNAalifold(20)

2. Individual counts for RNAalifold(20) [ download as .csv ]

Performance of Sfold - scored lower in this pairwise comparison

1. Total counts & total scores for Sfold

2. Individual counts for Sfold [ download as .csv ]