CompaRNA - on-line benchmarks of RNA structure prediction methods

Laboratory of Structural Bioinformatics @ Adam Mickiewicz University in Poznan

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Overview

Metric	RNAfold		Mastr(seed)
MCC	0.577	>	0.113
Average MCC ± 95% Confidence Intervals	0.599 ± 0.018	>	0.062 ± 0.016
Sensitivity	0.572	>	0.016
Positive Predictive Value	0.583	<	0.820
Total TP	27020	>	736
Total TN	29455672	<	29501160
Total FP	23130	>	234
Total FP CONTRA	3095	>	22
Total FP INCONS	16271	>	140
Total FP COMP	3764	>	72
Total FN	20191	<	46475
P-value	3.56938820447e-08

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Performance plots

Comparison of performance of RNAfold and Mastr(seed). Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data (individual counts for RNAfold and Mastr(seed)).
Average Matthews Correlation Coefficients (MCC) with 95% confidence intervals (CIs) were plotted for different RNA families, for which at least 3 members were present in the benchmarking dataset. 'n' denotes the number of MCCs used to calculate the average and CI. See tables below for raw data (individual counts for RNAfold and Mastr(seed)).
Comparison of average Matthews Correlation Coefficients (MCCs) for RNAfold and Mastr(seed). The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data (individual counts for RNAfold and Mastr(seed)).

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Performance of RNAfold - scored higher in this pairwise comparison

1. Total counts & total scores for RNAfold

Total Base Pair Counts
Total TP	27020
Total TN	29455672
Total FP	23130
Total FP CONTRA	3095
Total FP INCONS	16271
Total FP COMP	3764
Total FN	20191

Total Scores
MCC	0.577
Average MCC ± 95% Confidence Intervals	0.599 ± 0.018
Sensitivity	0.572
Positive Predictive Value	0.583
Nr of predictions	644

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2. Individual counts for RNAfold [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00001	RNaseP_arch links to Rfam database...	0.62	0.61	0.63	46	34118	34	3	24	7	29
ASE_00002	RNaseP_arch links to Rfam database...	0.64	0.62	0.67	45	35444	27	2	20	5	28
ASE_00004	RNaseP_bact_a links to Rfam database...	0.70	0.70	0.71	68	47799	30	9	19	2	29
ASE_00005	RNaseP_bact_a links to Rfam database...	0.63	0.58	0.68	68	57870	37	0	32	5	49
ASE_00006	RNaseP_bact_a links to Rfam database...	0.62	0.62	0.62	58	47493	38	7	28	3	35
ASE_00009	RNaseP_arch links to Rfam database...	0.78	0.75	0.82	50	26045	14	0	11	3	17
ASE_00010	RNaseP_bact_b links to Rfam database...	0.50	0.51	0.48	42	49683	51	11	34	6	40
ASE_00012	RNaseP_bact_a links to Rfam database...	0.58	0.54	0.62	67	73812	49	2	39	8	56
ASE_00014	RNaseP_arch links to Rfam database...	0.24	0.25	0.24	26	54178	82	8	73	1	80
ASE_00017	RNaseP_nuc links to Rfam database...	0.26	0.28	0.24	18	50966	73	6	50	17	46
ASE_00018	RNaseP_bact_a links to Rfam database...	0.80	0.76	0.84	102	80479	22	3	17	2	32
ASE_00020	RNaseP_bact_a links to Rfam database...	0.56	0.54	0.59	68	73804	48	8	40	0	58
ASE_00021	RNaseP_bact_a links to Rfam database...	0.60	0.54	0.65	87	104063	52	4	42	6	73
ASE_00022	RNaseP_bact_b links to Rfam database...	0.46	0.44	0.48	55	82914	66	6	53	7	69
ASE_00025	RNaseP_nuc links to Rfam database...	0.23	0.24	0.22	17	78527	117	12	50	55	54
ASE_00026	RNaseP_bact_a links to Rfam database...	0.53	0.51	0.54	56	59582	55	1	46	8	54
ASE_00028	RNaseP_bact_b links to Rfam database...	0.61	0.59	0.64	74	84550	51	9	33	9	52
ASE_00029	RNaseP_bact_a links to Rfam database...	0.57	0.54	0.61	66	82920	49	4	38	7	56
ASE_00032	RNaseP_bact_a links to Rfam database...	0.55	0.53	0.57	63	80090	53	5	42	6	55
ASE_00035	RNaseP_bact_a links to Rfam database...	0.30	0.28	0.32	33	70398	76	12	57	7	85
ASE_00036	RNaseP_bact_a links to Rfam database...	0.53	0.50	0.57	66	75739	57	5	45	7	66
ASE_00037	RNaseP_bact_a links to Rfam database...	0.49	0.46	0.52	51	59242	50	2	45	3	59
ASE_00038	RNaseP_bact_a links to Rfam database...	0.54	0.53	0.55	54	53529	46	4	41	1	47
ASE_00041	RNaseP_bact_a links to Rfam database...	0.53	0.51	0.55	55	57530	50	2	43	5	53
ASE_00042	RNaseP_bact_a links to Rfam database...	0.53	0.50	0.56	72	89971	58	4	53	1	73
ASE_00044	RNaseP_bact_a links to Rfam database...	0.69	0.68	0.70	71	54513	35	3	28	4	34
ASE_00045	RNaseP_bact_b links to Rfam database...	0.65	0.66	0.65	53	47196	36	8	21	7	27
ASE_00046	RNaseP_bact_a links to Rfam database...	0.62	0.57	0.67	59	50315	29	2	27	0	44
ASE_00047	RNaseP_bact_a links to Rfam database...	0.41	0.39	0.44	51	74189	66	4	61	1	79
ASE_00052	RNaseP_bact_a links to Rfam database...	0.50	0.46	0.55	52	61330	48	2	41	5	60
ASE_00053	RNaseP_bact_a links to Rfam database...	0.50	0.47	0.52	63	79280	62	5	53	4	70
ASE_00064	RNaseP_bact_a links to Rfam database...	0.43	0.43	0.44	38	45364	53	5	44	4	51
ASE_00068	RNaseP_bact_a links to Rfam database...	0.51	0.48	0.53	41	37598	37	4	32	1	44
ASE_00069	RNaseP_bact_a links to Rfam database...	0.67	0.64	0.70	90	82899	46	5	34	7	50
ASE_00074	RNaseP_bact_a links to Rfam database...	0.58	0.57	0.59	68	67780	49	6	42	1	51
ASE_00076	RNaseP_bact_a links to Rfam database...	0.54	0.51	0.57	60	68160	48	5	40	3	58
ASE_00077	RNaseP_bact_a links to Rfam database...	0.51	0.51	0.52	44	45065	41	6	35	0	42
ASE_00078	RNaseP_bact_a links to Rfam database...	0.68	0.67	0.68	56	42989	31	5	21	5	27
ASE_00079	RNaseP_bact_a links to Rfam database...	0.41	0.39	0.42	39	55519	53	3	50	0	61
ASE_00081	RNaseP_bact_a links to Rfam database...	0.55	0.55	0.55	53	49674	44	5	38	1	44
ASE_00082	RNaseP_bact_a links to Rfam database...	0.57	0.54	0.61	63	70396	55	1	40	14	53
ASE_00084	RNaseP_bact_a links to Rfam database...	0.70	0.69	0.72	68	53533	30	6	21	3	31
ASE_00090	RNaseP_bact_a links to Rfam database...	0.54	0.54	0.54	55	55509	51	4	43	4	46
ASE_00092	RNaseP_bact_a links to Rfam database...	0.73	0.71	0.75	80	63440	31	0	26	5	33
ASE_00096	RNaseP_bact_a links to Rfam database...	0.57	0.56	0.58	64	63436	47	4	42	1	51
ASE_00099	RNaseP_bact_a links to Rfam database...	0.51	0.50	0.53	60	64506	56	6	48	2	60
ASE_00100	RNaseP_nuc links to Rfam database...	0.20	0.22	0.19	17	82124	115	16	58	41	59
ASE_00102	RNaseP_bact_a links to Rfam database...	0.43	0.41	0.45	68	117703	87	8	76	3	98
ASE_00104	RNaseP_bact_a links to Rfam database...	0.53	0.50	0.56	60	64153	49	6	42	1	59
ASE_00105	RNaseP_bact_a links to Rfam database...	0.40	0.39	0.41	43	64155	65	13	50	2	68
ASE_00108	RNaseP_nuc links to Rfam database...	0.38	0.40	0.37	25	46903	77	9	34	34	38
ASE_00111	RNaseP_nuc links to Rfam database...	0.24	0.32	0.19	18	49990	85	36	42	7	39
ASE_00112	RNaseP_bact_a links to Rfam database...	0.78	0.73	0.83	85	75363	26	5	13	8	31
ASE_00114	RNaseP_bact_b links to Rfam database...	0.32	0.30	0.34	23	45384	55	6	38	11	54
ASE_00116	RNaseP_arch links to Rfam database...	0.20	0.20	0.20	13	31560	56	2	51	3	53
ASE_00118	RNaseP_bact_a links to Rfam database...	0.52	0.52	0.53	53	60626	49	7	40	2	49
ASE_00119	RNaseP_bact_a links to Rfam database...	0.67	0.65	0.69	70	62734	33	1	30	2	38
ASE_00120	RNaseP_arch links to Rfam database...	0.39	0.37	0.40	35	46884	52	10	42	0	59
ASE_00121	RNaseP_arch links to Rfam database...	0.25	0.25	0.26	23	45060	67	5	62	0	69
ASE_00123	RNaseP_bact_a links to Rfam database...	0.56	0.54	0.59	46	38425	37	2	30	5	39
ASE_00125	RNaseP_bact_a links to Rfam database...	0.64	0.63	0.65	55	39255	31	4	26	1	33
ASE_00126	RNaseP_bact_a links to Rfam database...	0.75	0.77	0.74	63	40385	26	3	19	4	19
ASE_00129	RNaseP_bact_a links to Rfam database...	0.52	0.50	0.53	56	62730	53	5	44	4	55
ASE_00131	RNaseP_bact_a links to Rfam database...	0.63	0.55	0.71	47	39274	29	0	19	10	38
ASE_00132	RNaseP_bact_a links to Rfam database...	0.64	0.63	0.65	60	50311	34	7	25	2	35
ASE_00135	RNaseP_bact_a links to Rfam database...	0.46	0.45	0.47	49	63085	60	8	48	4	60
ASE_00138	RNaseP_bact_a links to Rfam database...	0.53	0.52	0.55	42	40393	35	4	31	0	39
ASE_00142	RNaseP_bact_a links to Rfam database...	0.75	0.71	0.80	87	67052	26	4	18	4	35
ASE_00145	RNaseP_arch links to Rfam database...	0.46	0.46	0.46	51	70013	69	6	55	8	60
ASE_00146	RNaseP_bact_a links to Rfam database...	0.51	0.46	0.56	57	70774	48	0	45	3	67
ASE_00148	RNaseP_arch links to Rfam database...	0.70	0.67	0.73	103	112434	42	4	34	4	51
ASE_00151	RNaseP_bact_a links to Rfam database...	0.28	0.27	0.29	26	51914	63	11	52	0	72
ASE_00153	RNaseP_nuc links to Rfam database...	0.61	0.62	0.61	45	57556	72	2	27	43	28
ASE_00154	RNaseP_arch links to Rfam database...	0.63	0.63	0.64	67	65236	42	4	34	4	40
ASE_00155	RNaseP_arch links to Rfam database...	0.51	0.50	0.52	71	93391	71	10	56	5	71
ASE_00161	RNaseP_bact_b links to Rfam database...	0.27	0.29	0.26	25	53530	73	18	55	0	62
ASE_00168	RNaseP_nuc links to Rfam database...	0.16	0.20	0.14	13	60630	100	24	59	17	51
ASE_00169	RNaseP_bact_a links to Rfam database...	0.51	0.50	0.52	53	57190	52	7	41	4	54
ASE_00170	RNaseP_bact_a links to Rfam database...	0.70	0.68	0.72	63	48740	26	2	23	1	30
ASE_00171	RNaseP_bact_a links to Rfam database...	0.59	0.60	0.59	56	48421	40	9	30	1	38
ASE_00172	RNaseP_bact_a links to Rfam database...	0.69	0.69	0.70	73	58892	36	6	25	5	33
ASE_00176	RNaseP_bact_a links to Rfam database...	0.59	0.55	0.63	61	59934	39	5	31	3	49
ASE_00179	RNaseP_bact_a links to Rfam database...	0.64	0.65	0.62	55	44164	34	7	27	0	29
ASE_00180	RNaseP_bact_a links to Rfam database...	0.72	0.69	0.75	69	51268	29	2	21	6	31
ASE_00181	RNaseP_bact_a links to Rfam database...	0.54	0.53	0.54	56	57527	51	3	44	4	50
ASE_00182	RNaseP_bact_a links to Rfam database...	0.48	0.46	0.50	63	84128	67	6	58	3	73
ASE_00183	RNaseP_bact_a links to Rfam database...	0.72	0.71	0.73	80	61316	34	2	27	5	33
ASE_00184	RNaseP_bact_a links to Rfam database...	0.62	0.63	0.62	64	54511	40	10	30	0	38
ASE_00185	RNaseP_bact_a links to Rfam database...	0.80	0.76	0.84	97	73421	25	3	15	7	31
ASE_00186	RNaseP_bact_a links to Rfam database...	0.74	0.70	0.79	92	78886	30	3	22	5	40
ASE_00187	RNaseP_arch links to Rfam database...	0.51	0.50	0.52	57	68526	57	7	45	5	58
ASE_00189	RNaseP_bact_b links to Rfam database...	0.58	0.55	0.61	56	63098	41	9	27	5	46
ASE_00190	RNaseP_bact_b links to Rfam database...	0.50	0.48	0.52	43	45368	44	2	38	4	47
ASE_00191	RNaseP_arch links to Rfam database...	0.55	0.52	0.57	32	29590	30	2	22	6	29
ASE_00192	RNaseP_bact_b links to Rfam database...	0.49	0.47	0.51	62	84544	66	10	50	6	71
ASE_00194	RNaseP_bact_b links to Rfam database...	0.46	0.45	0.47	53	73423	64	8	52	4	66
ASE_00196	RNaseP_arch links to Rfam database...	0.75	0.73	0.76	55	31554	21	2	15	4	20
ASE_00197	RNaseP_bact_a links to Rfam database...	0.49	0.46	0.52	67	89123	66	4	59	3	78
ASE_00198	RNaseP_bact_a links to Rfam database...	0.65	0.65	0.66	66	52550	34	6	28	0	36
ASE_00203	RNaseP_bact_a links to Rfam database...	0.66	0.66	0.67	63	46571	31	6	25	0	33
ASE_00204	RNaseP_bact_b links to Rfam database...	0.64	0.60	0.68	67	67797	37	7	25	5	45
ASE_00205	RNaseP_arch links to Rfam database...	0.44	0.43	0.44	39	45968	56	4	45	7	51
ASE_00209	RNaseP_arch links to Rfam database...	0.39	0.38	0.41	33	42990	48	5	43	0	55
ASE_00210	RNaseP_arch links to Rfam database...	0.59	0.60	0.59	39	27195	28	6	21	1	26
ASE_00212	RNaseP_bact_a links to Rfam database...	0.53	0.51	0.55	76	93822	67	5	58	4	72
ASE_00213	RNaseP_arch links to Rfam database...	0.70	0.70	0.70	46	27195	21	6	14	1	20
ASE_00214	RNaseP_bact_a links to Rfam database...	0.80	0.79	0.81	81	56180	27	3	16	8	22
ASE_00215	RNaseP_bact_a links to Rfam database...	0.54	0.51	0.57	50	48429	39	4	33	2	49
ASE_00216	RNaseP_bact_a links to Rfam database...	0.63	0.62	0.63	51	39259	32	7	23	2	31
ASE_00217	RNaseP_bact_a links to Rfam database...	0.30	0.29	0.32	26	40388	60	6	50	4	64
ASE_00221	RNaseP_bact_a links to Rfam database...	0.58	0.53	0.64	62	64523	38	3	32	3	55
ASE_00222	RNaseP_arch links to Rfam database...	0.64	0.62	0.66	97	111953	53	9	42	2	60
ASE_00227	RNaseP_bact_a links to Rfam database...	0.30	0.29	0.32	38	78884	81	6	75	0	95
ASE_00228	RNaseP_bact_a links to Rfam database...	0.60	0.60	0.59	52	46883	36	14	22	0	34
ASE_00229	RNaseP_bact_a links to Rfam database...	0.60	0.60	0.61	52	42401	33	10	23	0	35
ASE_00231	RNaseP_bact_a links to Rfam database...	0.69	0.69	0.70	66	47801	28	5	23	0	30
ASE_00232	RNaseP_bact_a links to Rfam database...	0.59	0.58	0.60	49	38421	35	3	30	2	35
ASE_00234	RNaseP_bact_a links to Rfam database...	0.58	0.53	0.63	68	75358	45	5	35	5	61
ASE_00237	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	45675	95	25	53	17	56
ASE_00238	RNaseP_bact_a links to Rfam database...	0.62	0.61	0.63	70	64150	46	2	39	5	44
ASE_00240	RNaseP_bact_a links to Rfam database...	0.64	0.62	0.66	58	46577	37	2	28	7	35
ASE_00241	RNaseP_bact_a links to Rfam database...	0.60	0.60	0.61	52	43871	34	7	26	1	35
ASE_00242	RNaseP_bact_a links to Rfam database...	0.72	0.68	0.76	76	60975	27	3	21	3	36
ASE_00245	RNaseP_nuc links to Rfam database...	0.90	0.87	0.93	68	55205	40	0	5	35	10
ASE_00246	RNaseP_nuc links to Rfam database...	0.28	0.31	0.26	21	48123	72	17	44	11	46
ASE_00247	RNaseP_nuc links to Rfam database...	0.18	0.19	0.17	12	54213	88	16	44	28	52
ASE_00248	RNaseP_bact_a links to Rfam database...	0.47	0.43	0.51	49	62384	48	3	45	0	65
ASE_00250	RNaseP_bact_a links to Rfam database...	0.61	0.59	0.64	77	78882	47	4	40	3	54
ASE_00251	RNaseP_nuc links to Rfam database...	1.00	1.00	1.00	43	17723	22	0	0	22	0
ASE_00254	RNaseP_bact_a links to Rfam database...	0.74	0.72	0.77	59	36779	24	5	13	6	23
ASE_00255	RNaseP_bact_a links to Rfam database...	0.47	0.45	0.50	59	74572	60	7	53	0	71
ASE_00257	RNaseP_bact_a links to Rfam database...	0.64	0.64	0.64	62	50943	35	1	34	0	35
ASE_00258	RNaseP_nuc links to Rfam database...	0.71	0.67	0.77	36	26749	23	0	11	12	18
ASE_00259	RNaseP_bact_a links to Rfam database...	0.35	0.33	0.36	40	73043	71	8	62	1	81
ASE_00263	RNaseP_bact_a links to Rfam database...	0.62	0.62	0.62	74	70380	47	5	41	1	46
ASE_00264	RNaseP_nuc links to Rfam database...	0.84	0.78	0.90	78	49054	24	0	9	15	22
ASE_00267	RNaseP_bact_a links to Rfam database...	0.32	0.31	0.34	27	45070	61	5	48	8	61
ASE_00270	RNaseP_bact_a links to Rfam database...	0.64	0.63	0.66	81	72267	43	8	34	1	47
ASE_00274	RNaseP_bact_a links to Rfam database...	0.48	0.47	0.51	48	55516	47	7	40	0	55
ASE_00277	RNaseP_bact_a links to Rfam database...	0.38	0.38	0.38	35	48113	59	9	48	2	56
ASE_00279	RNaseP_bact_a links to Rfam database...	0.70	0.66	0.74	67	53210	28	0	24	4	34
ASE_00280	RNaseP_bact_a links to Rfam database...	0.37	0.37	0.38	36	51908	62	6	53	3	62
ASE_00281	RNaseP_bact_a links to Rfam database...	0.60	0.56	0.64	49	44475	34	3	24	7	39
ASE_00282	RNaseP_bact_a links to Rfam database...	0.42	0.42	0.43	53	77692	70	6	64	0	74
ASE_00283	RNaseP_bact_a links to Rfam database...	0.73	0.69	0.76	74	61679	28	4	19	5	33
ASE_00284	RNaseP_bact_a links to Rfam database...	0.63	0.61	0.65	66	58209	42	4	32	6	42
ASE_00285	RNaseP_bact_a links to Rfam database...	0.71	0.67	0.75	82	68897	35	2	25	8	40
ASE_00286	RNaseP_bact_a links to Rfam database...	0.43	0.42	0.43	39	46574	61	3	49	9	53
ASE_00287	RNaseP_bact_a links to Rfam database...	0.72	0.67	0.77	69	54856	30	2	19	9	34
ASE_00288	RNaseP_bact_a links to Rfam database...	0.32	0.31	0.33	29	45968	60	5	54	1	64
ASE_00289	RNaseP_bact_a links to Rfam database...	0.66	0.62	0.70	98	100885	46	4	38	4	59
ASE_00292	RNaseP_bact_a links to Rfam database...	0.71	0.67	0.76	92	81689	34	4	25	5	46
ASE_00294	RNaseP_bact_a links to Rfam database...	0.79	0.75	0.83	128	114327	29	3	23	3	43
ASE_00295	RNaseP_bact_a links to Rfam database...	0.53	0.49	0.57	64	73808	51	5	43	3	67
ASE_00296	RNaseP_bact_a links to Rfam database...	0.27	0.26	0.29	37	91677	95	8	84	3	108
ASE_00297	RNaseP_bact_a links to Rfam database...	0.49	0.50	0.49	49	52875	53	5	46	2	49
ASE_00298	RNaseP_bact_a links to Rfam database...	0.47	0.45	0.50	51	67425	57	7	45	5	62
ASE_00299	RNaseP_bact_a links to Rfam database...	0.55	0.55	0.56	55	49357	48	8	35	5	45
ASE_00303	RNaseP_nuc links to Rfam database...	0.61	0.64	0.58	61	67790	56	11	34	11	34
ASE_00305	RNaseP_bact_b links to Rfam database...	0.44	0.46	0.42	39	54523	61	15	38	8	46
ASE_00313	RNaseP_nuc links to Rfam database...	0.73	0.73	0.73	65	62392	46	6	18	22	24
ASE_00316	RNaseP_nuc links to Rfam database...	0.56	0.57	0.54	56	107777	87	13	34	40	42
ASE_00318	RNaseP_bact_b links to Rfam database...	0.63	0.60	0.65	71	80091	42	13	25	4	47
ASE_00321	RNaseP_bact_b links to Rfam database...	0.40	0.40	0.40	35	54527	57	9	44	4	53
ASE_00327	RNaseP_nuc links to Rfam database...	0.77	0.75	0.80	67	57207	36	4	13	19	22
ASE_00328	RNaseP_bact_b links to Rfam database...	0.41	0.41	0.40	46	72657	74	3	65	6	66
ASE_00329	RNaseP_nuc links to Rfam database...	0.66	0.70	0.63	44	40685	47	8	18	21	19
ASE_00330	RNaseP_nuc links to Rfam database...	0.72	0.71	0.74	64	56193	43	3	20	20	26
ASE_00332	RNaseP_bact_a links to Rfam database...	0.53	0.51	0.55	71	81682	58	2	55	1	67
ASE_00335	RNaseP_bact_b links to Rfam database...	0.48	0.47	0.50	54	75357	62	5	50	7	62
ASE_00337	RNaseP_nuc links to Rfam database...	0.37	0.38	0.36	27	39266	60	5	42	13	44
ASE_00338	RNaseP_nuc links to Rfam database...	0.65	0.63	0.67	62	66338	47	4	26	17	36
ASE_00339	RNaseP_bact_a links to Rfam database...	0.53	0.52	0.53	62	80084	66	5	49	12	57
ASE_00340	RNaseP_bact_a links to Rfam database...	0.75	0.74	0.76	63	45973	29	6	14	9	22
ASE_00342	RNaseP_bact_a links to Rfam database...	0.47	0.44	0.50	51	62379	51	2	49	0	64
ASE_00343	RNaseP_bact_a links to Rfam database...	0.31	0.31	0.31	35	83322	95	9	70	16	78
ASE_00346	RNaseP_arch links to Rfam database...	0.30	0.29	0.31	28	48116	63	7	54	2	69
ASE_00353	RNaseP_bact_a links to Rfam database...	0.45	0.46	0.45	49	57860	61	11	50	0	58
ASE_00359	RNaseP_arch links to Rfam database...	0.48	0.49	0.48	39	42696	50	3	40	7	41
ASE_00360	RNaseP_arch links to Rfam database...	0.31	0.31	0.31	20	29338	51	11	34	6	45
ASE_00361	RNaseP_bact_a links to Rfam database...	0.49	0.46	0.51	59	75351	59	7	49	3	68
ASE_00362	RNaseP_bact_a links to Rfam database...	0.62	0.62	0.63	56	48116	36	6	27	3	35
ASE_00363	RNaseP_bact_a links to Rfam database...	0.54	0.55	0.53	52	51262	46	5	41	0	42
ASE_00364	RNaseP_bact_a links to Rfam database...	0.31	0.30	0.31	32	54183	74	7	63	4	73
ASE_00366	RNaseP_bact_a links to Rfam database...	0.52	0.54	0.50	53	58546	57	10	44	3	45
ASE_00367	RNaseP_bact_a links to Rfam database...	0.32	0.34	0.31	29	42978	64	8	56	0	57
ASE_00369	RNaseP_bact_a links to Rfam database...	0.68	0.67	0.69	72	55840	39	2	31	6	35
ASE_00370	RNaseP_bact_a links to Rfam database...	0.65	0.63	0.67	53	41826	27	5	21	1	31
ASE_00372	RNaseP_bact_a links to Rfam database...	0.70	0.69	0.72	69	51907	31	5	22	4	31
ASE_00374	RNaseP_bact_a links to Rfam database...	0.56	0.56	0.56	49	44763	38	8	30	0	39
ASE_00375	RNaseP_bact_a links to Rfam database...	0.57	0.54	0.60	59	60280	44	6	33	5	51
ASE_00376	RNaseP_bact_a links to Rfam database...	0.52	0.50	0.54	53	56855	48	4	41	3	52
ASE_00377	RNaseP_bact_a links to Rfam database...	0.68	0.66	0.70	71	57529	37	4	26	7	36
ASE_00379	RNaseP_bact_a links to Rfam database...	0.44	0.44	0.45	39	45969	56	7	41	8	50
ASE_00380	RNaseP_bact_a links to Rfam database...	0.46	0.44	0.48	44	54855	52	1	46	5	55
ASE_00382	RNaseP_bact_a links to Rfam database...	0.66	0.65	0.67	55	41823	30	6	21	3	29
ASE_00383	RNaseP_bact_a links to Rfam database...	0.46	0.44	0.48	46	54520	54	5	44	5	59
ASE_00384	RNaseP_bact_a links to Rfam database...	0.76	0.75	0.78	69	48427	25	3	17	5	23
ASE_00385	RNaseP_bact_a links to Rfam database...	0.42	0.43	0.41	35	41819	52	6	45	1	46
ASE_00386	RNaseP_bact_a links to Rfam database...	0.53	0.53	0.53	51	50306	51	4	42	5	45
ASE_00387	RNaseP_bact_a links to Rfam database...	0.41	0.41	0.41	43	55840	62	6	56	0	61
ASE_00388	RNaseP_bact_a links to Rfam database...	0.70	0.70	0.70	62	45665	29	2	24	3	27
ASE_00390	RNaseP_bact_a links to Rfam database...	0.47	0.46	0.49	39	42115	51	3	38	10	46
ASE_00393	RNaseP_bact_a links to Rfam database...	0.37	0.35	0.39	33	47811	57	2	49	6	60
ASE_00394	RNaseP_bact_a links to Rfam database...	0.72	0.72	0.73	67	46879	29	3	22	4	26
ASE_00395	RNaseP_bact_a links to Rfam database...	0.69	0.68	0.70	57	41535	33	2	22	9	27
ASE_00396	RNaseP_bact_a links to Rfam database...	0.41	0.41	0.40	34	41532	56	11	39	6	49
ASE_00397	RNaseP_bact_a links to Rfam database...	0.45	0.46	0.45	48	54508	59	8	51	0	57
ASE_00398	RNaseP_bact_a links to Rfam database...	0.64	0.62	0.66	64	55848	36	1	32	3	40
ASE_00400	RNaseP_bact_a links to Rfam database...	0.54	0.53	0.55	56	57868	47	2	44	1	50
ASE_00401	RNaseP_bact_a links to Rfam database...	0.54	0.56	0.53	70	76897	61	13	48	0	56
ASE_00402	RNaseP_bact_a links to Rfam database...	0.45	0.45	0.46	38	42404	50	5	39	6	47
ASE_00403	RNaseP_bact_a links to Rfam database...	0.35	0.35	0.36	37	55843	68	4	61	3	70
ASE_00404	RNaseP_bact_a links to Rfam database...	0.55	0.54	0.57	46	42990	42	0	35	7	39
ASE_00406	RNaseP_bact_a links to Rfam database...	0.71	0.69	0.74	65	48740	27	8	15	4	29
ASE_00411	RNaseP_bact_a links to Rfam database...	0.35	0.36	0.34	32	49361	62	11	51	0	57
ASE_00412	RNaseP_bact_a links to Rfam database...	0.46	0.45	0.48	47	58214	51	8	42	1	58
ASE_00413	RNaseP_bact_a links to Rfam database...	0.39	0.42	0.36	34	44457	60	14	46	0	47
ASE_00414	RNaseP_bact_a links to Rfam database...	0.23	0.23	0.23	22	46265	76	5	68	3	73
ASE_00415	RNaseP_bact_a links to Rfam database...	0.45	0.45	0.45	46	54843	59	6	51	2	57
ASE_00416	RNaseP_bact_a links to Rfam database...	0.69	0.67	0.72	85	77303	41	3	30	8	42
ASE_00417	RNaseP_arch links to Rfam database...	0.36	0.37	0.35	37	54508	73	10	60	3	63
ASE_00418	RNaseP_arch links to Rfam database...	0.20	0.21	0.20	16	38700	67	12	53	2	59
ASE_00419	RNaseP_bact_a links to Rfam database...	0.74	0.72	0.77	74	54850	26	5	17	4	29
ASE_00420	RNaseP_nuc links to Rfam database...	0.66	0.67	0.65	42	43300	52	3	20	29	21
ASE_00422	RNaseP_bact_a links to Rfam database...	0.70	0.68	0.72	64	46882	33	5	20	8	30
ASE_00423	RNaseP_bact_a links to Rfam database...	0.55	0.54	0.55	59	56846	51	7	41	3	50
ASE_00426	RNaseP_bact_a links to Rfam database...	0.61	0.58	0.64	63	60976	37	7	29	1	45
ASE_00427	RNaseP_nuc links to Rfam database...	0.15	0.20	0.12	9	40677	83	22	47	14	37
ASE_00428	RNaseP_bact_a links to Rfam database...	0.53	0.51	0.55	64	76520	56	5	47	4	61
ASE_00430	RNaseP_bact_a links to Rfam database...	0.63	0.62	0.65	60	46879	40	5	27	8	37
ASE_00431	RNaseP_bact_a links to Rfam database...	0.52	0.49	0.55	47	46275	43	7	31	5	48
ASE_00434	RNaseP_bact_b links to Rfam database...	0.57	0.55	0.58	61	68160	52	8	36	8	49
ASE_00437	RNaseP_bact_a links to Rfam database...	0.42	0.40	0.44	54	79277	70	4	66	0	81
ASE_00441	RNaseP_bact_a links to Rfam database...	0.78	0.74	0.81	83	64159	31	3	16	12	29
ASE_00443	RNaseP_nuc links to Rfam database...	0.92	0.86	0.98	43	26752	32	0	1	31	7
ASE_00447	RNaseP_bact_a links to Rfam database...	0.49	0.47	0.51	54	60273	56	1	50	5	62
ASE_00448	RNaseP_bact_a links to Rfam database...	0.22	0.22	0.23	25	64150	92	6	80	6	87
ASE_00451	RNaseP_bact_a links to Rfam database...	0.49	0.46	0.52	58	70765	56	3	50	3	67
ASE_00454	RNaseP_nuc links to Rfam database...	0.64	0.63	0.66	40	43304	49	2	19	28	23
CRW_00013	Intron_gpI links to Rfam database...	0.21	0.22	0.21	25	103623	116	12	80	24	90
CRW_00016	Intron_gpI links to Rfam database...	0.64	0.62	0.67	74	77311	47	5	31	11	46
CRW_00306	SSU_rRNA_eukarya links to Rfam database...	0.26	0.26	0.25	121	1445372	410	63	294	53	341
CRW_00379	SSU_rRNA_eukarya links to Rfam database...	0.42	0.43	0.41	227	2126398	426	63	265	98	307
CRW_00610	Intron_gpI links to Rfam database...	0.21	0.21	0.22	17	36239	59	7	52	0	64
CRW_00613	Intron_gpI links to Rfam database...	0.65	0.60	0.70	47	34913	28	1	19	8	31
CRW_00614	Intron_gpI links to Rfam database...	0.16	0.19	0.14	11	121692	131	25	43	63	46
CRW_00618	Intron_gpI links to Rfam database...	0.12	0.13	0.12	8	56212	82	13	47	22	53
CRW_00619	Intron_gpI links to Rfam database...	0.39	0.45	0.34	33	164929	139	28	35	76	40
CRW_00620	Intron_gpI links to Rfam database...	0.17	0.22	0.13	14	150871	157	32	58	67	49
CRW_00621	Intron_gpI links to Rfam database...	0.10	0.10	0.10	7	153109	156	13	52	91	64
CRW_00623	Intron_gpI links to Rfam database...	0.39	0.37	0.40	31	129718	114	8	38	68	52
CRW_00633	Intron_gpI links to Rfam database...	0.44	0.43	0.45	46	63444	58	13	43	2	60
CRW_00634	Intron_gpI links to Rfam database...	0.50	0.52	0.49	49	64519	57	10	42	5	45
CRW_00670	Intron_gpI links to Rfam database...	0.69	0.68	0.71	82	70009	36	9	25	2	38
CRW_00671	Intron_gpI links to Rfam database...	0.60	0.59	0.61	69	62722	49	6	38	5	48
CRW_00672	Intron_gpI links to Rfam database...	0.48	0.50	0.47	55	72273	65	19	43	3	56
CRW_00674	Intron_gpI links to Rfam database...	0.53	0.53	0.52	66	83310	62	12	48	2	58
CRW_00676	Intron_gpI links to Rfam database...	0.54	0.56	0.52	64	93406	74	17	41	16	51
CRW_00692	Intron_gpI links to Rfam database...	0.40	0.42	0.38	38	68536	66	24	37	5	52
CRW_00800	SSU_rRNA_eukarya links to Rfam database...	0.48	0.47	0.48	223	1401508	313	43	201	69	247
CRW_01484	5S_rRNA links to Rfam database...	0.18	0.18	0.18	7	7465	32	4	27	1	32
CRW_01499	5S_rRNA links to Rfam database...	0.52	0.51	0.54	21	7962	19	3	15	1	20
CRW_01507	5S_rRNA links to Rfam database...	0.84	0.80	0.87	33	7465	7	0	5	2	8
CRW_01535	5S_rRNA links to Rfam database...	0.84	0.78	0.91	29	7108	8	0	3	5	8
CRW_01590	5S_rRNA links to Rfam database...	0.29	0.30	0.29	11	7102	27	6	21	0	26
CRW_01603	5S_rRNA links to Rfam database...	0.83	0.78	0.88	29	7107	7	0	4	3	8
PDB_00005	Tymo_tRNA-like links to Rfam database...	0.88	0.79	1.00	11	935	0	0	0	0	3
PDB_00012	mir-TAR links to Rfam database...	1.00	1.00	1.00	7	399	3	0	0	3	0
PDB_00070	tRNA links to Rfam database...	0.68	0.67	0.70	16	2827	7	1	6	0	8
PDB_00213	Gammaretro_CES links to Rfam database...	0.92	0.85	1.00	35	5015	0	0	0	0	6
PDB_00392	tRNA links to Rfam database...	0.16	0.19	0.15	4	2824	22	7	15	0	17
PDB_00553	mir-TAR links to Rfam database...	1.00	1.00	1.00	11	454	0	0	0	0	0
PDB_00716	HDV_ribozyme links to Rfam database...	-0.01	0.00	0.00	0	2678	24	1	22	1	23
PDB_00741	Entero_5_CRE links to Rfam database...	0.87	0.76	1.00	13	690	0	0	0	0	4
PDB_00810	s2m links to Rfam database...	0.71	0.65	0.79	11	1067	4	0	3	1	6
PDB_00827	Intron_gpI links to Rfam database...	0.50	0.46	0.55	37	26961	31	1	29	1	44
PDB_00828	Purine links to Rfam database...	0.88	0.78	1.00	21	2464	0	0	0	0	6
PDB_00829	Purine links to Rfam database...	0.86	0.75	1.00	18	2260	0	0	0	0	6
PDB_00876	HIV_FE links to Rfam database...	0.97	0.95	1.00	19	971	0	0	0	0	1
PDB_00919	RNaseP_bact_a links to Rfam database...	0.50	0.48	0.53	49	44160	47	3	41	3	54
PDB_01001	tRNA links to Rfam database...	0.52	0.56	0.50	10	2125	10	3	7	0	8
PDB_01020	Purine links to Rfam database...	0.86	0.74	1.00	17	2261	1	0	0	1	6
PDB_01050	UnaL2 links to Rfam database...	0.96	0.92	1.00	12	618	2	0	0	2	1
PDB_01051	Telomerase-cil links to Rfam database...	0.75	0.69	0.82	9	892	6	0	2	4	4
PDB_01073	SAM links to Rfam database...	0.75	0.65	0.88	22	4346	4	0	3	1	12
PDB_01092	glmS links to Rfam database...	0.71	0.63	0.80	33	10112	10	1	7	2	19
PDB_01114	TPP links to Rfam database...	0.42	0.37	0.48	10	2829	11	0	11	0	17
PDB_01152	HIV_FS2 links to Rfam database...	0.96	0.93	1.00	13	548	0	0	0	0	1
PDB_01236	ykoK links to Rfam database...	0.70	0.67	0.73	36	11579	16	0	13	3	18
RFA_00389	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00390	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00391	Hammerhead_3 links to Rfam database...	0.93	0.87	1.00	13	1418	2	0	0	2	2
RFA_00396	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	2	0	0	2	1
RFA_00402	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	0	0	0	0	0
RFA_00409	Hammerhead_3 links to Rfam database...	0.55	0.53	0.57	8	1417	7	1	5	1	7
RFA_00416	Hammerhead_3 links to Rfam database...	0.93	0.93	0.93	14	1470	4	0	1	3	1
RFA_00425	Hammerhead_3 links to Rfam database...	0.93	0.87	1.00	13	1640	4	0	0	4	2
RFA_00427	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1471	2	0	0	2	1
RFA_00433	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00434	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00436	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00440	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1470	2	0	0	2	0
RFA_00442	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00444	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1525	1	0	0	1	0
RFA_00446	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1471	2	0	0	2	1
RFA_00449	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1471	2	0	0	2	1
RFA_00582	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	5980	21	0	0	21	0
RFA_00583	Y_RNA links to Rfam database...	0.55	0.53	0.57	8	4936	20	0	6	14	7
RFA_00584	Y_RNA links to Rfam database...	0.87	0.87	0.87	13	2911	16	0	2	14	2
RFA_00585	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4836	12	0	0	12	0
RFA_00586	Y_RNA links to Rfam database...	0.89	0.80	1.00	12	3904	11	0	0	11	3
RFA_00587	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4836	12	0	0	12	0
RFA_00588	Y_RNA links to Rfam database...	0.93	0.87	1.00	13	4547	12	0	0	12	2
RFA_00589	Y_RNA links to Rfam database...	0.93	0.87	1.00	13	4358	16	0	0	16	2
RFA_00594	Y_RNA links to Rfam database...	0.97	0.93	1.00	14	2761	11	0	0	11	1
RFA_00596	Y_RNA links to Rfam database...	0.00	0.00	0.00	0	5981	23	4	10	9	15
RFA_00597	Telomerase-vert links to Rfam database...	0.49	0.50	0.49	54	97793	83	5	51	27	55
RFA_00598	Telomerase-vert links to Rfam database...	0.61	0.59	0.63	60	84570	63	6	30	27	41
RFA_00599	Telomerase-vert links to Rfam database...	0.66	0.70	0.63	78	101351	65	17	29	19	33
RFA_00600	Telomerase-vert links to Rfam database...	0.63	0.70	0.56	70	120170	90	29	26	35	30
RFA_00601	Telomerase-vert links to Rfam database...	0.47	0.49	0.44	56	99109	88	22	48	18	58
RFA_00602	Telomerase-vert links to Rfam database...	0.52	0.55	0.50	64	101347	87	16	48	23	52
RFA_00603	Telomerase-cil links to Rfam database...	0.64	0.69	0.60	24	13490	19	4	12	3	11
RFA_00604	Telomerase-cil links to Rfam database...	0.69	0.71	0.68	25	13493	24	2	10	12	10
RFA_00605	Telomerase-cil links to Rfam database...	0.37	0.34	0.40	12	15195	27	3	15	9	23
RFA_00606	Telomerase-cil links to Rfam database...	0.67	0.67	0.68	26	21283	25	7	5	13	13
RFA_00607	Telomerase-cil links to Rfam database...	0.83	0.83	0.83	30	17730	18	4	2	12	6
RFA_00609	Telomerase-cil links to Rfam database...	0.75	0.76	0.74	28	17917	28	2	8	18	9
RFA_00610	Telomerase-cil links to Rfam database...	0.90	0.86	0.94	32	17171	18	0	2	16	5
RFA_00611	Telomerase-cil links to Rfam database...	0.63	0.63	0.63	22	13006	15	3	10	2	13
RFA_00613	Telomerase-cil links to Rfam database...	0.61	0.60	0.62	21	12846	15	4	9	2	14
RFA_00615	Telomerase-cil links to Rfam database...	0.61	0.63	0.59	22	13329	19	5	10	4	13
RFA_00620	Telomerase-cil links to Rfam database...	0.64	0.62	0.67	24	21909	25	3	9	13	15
RFA_00621	RNase_MRP links to Rfam database...	0.38	0.39	0.38	30	46280	63	10	40	13	46
RFA_00623	RNase_MRP links to Rfam database...	0.44	0.44	0.45	34	43881	55	8	33	14	44
RFA_00624	RNase_MRP links to Rfam database...	0.43	0.46	0.41	28	30067	45	6	34	5	33
RFA_00626	rne5 links to Rfam database...	0.96	0.92	1.00	80	56536	25	0	0	25	7
RFA_00627	rne5 links to Rfam database...	0.72	0.69	0.75	60	56873	35	4	16	15	27
RFA_00628	rne5 links to Rfam database...	0.93	0.91	0.96	78	57210	29	0	3	26	8
RFA_00630	rne5 links to Rfam database...	0.66	0.66	0.66	57	56867	40	6	23	11	30
RFA_00632	HDV_ribozyme links to Rfam database...	0.38	0.39	0.37	11	4065	19	2	17	0	17
RFA_00636	HDV_ribozyme links to Rfam database...	0.42	0.43	0.43	12	3977	16	2	14	0	16
RFA_00639	7SK links to Rfam database...	0.17	0.18	0.16	16	54515	86	19	65	2	71
RFA_00642	Vimentin3 links to Rfam database...	0.25	0.22	0.29	4	2912	10	2	8	0	14
RFA_00643	Vimentin3 links to Rfam database...	0.24	0.22	0.27	4	2196	12	2	9	1	14
RFA_00644	Vimentin3 links to Rfam database...	-0.01	0.00	0.00	0	2681	20	4	16	0	18
RFA_00645	Vimentin3 links to Rfam database...	-0.01	0.00	0.00	0	2401	14	3	11	0	18
RFA_00649	Vimentin3 links to Rfam database...	0.34	0.33	0.35	6	2128	13	2	9	2	12
RFA_00651	Vimentin3 links to Rfam database...	0.35	0.33	0.38	6	2064	10	1	9	0	12
RFA_00653	Vimentin3 links to Rfam database...	0.34	0.33	0.35	6	2128	11	3	8	0	12
RFA_00654	Vimentin3 links to Rfam database...	0.27	0.28	0.28	5	2397	13	2	11	0	13
RFA_00658	Hammerhead_1 links to Rfam database...	0.59	0.50	0.70	7	1118	5	0	3	2	7
RFA_00659	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	1120	10	1	7	2	14
RFA_00664	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	980	11	0	10	1	14
RFA_00667	Hammerhead_1 links to Rfam database...	0.29	0.29	0.31	4	977	10	1	8	1	10
RFA_00668	Hammerhead_1 links to Rfam database...	0.41	0.43	0.40	6	975	9	0	9	0	8
RFA_00672	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	895	9	0	8	1	13
RFA_00673	Hammerhead_1 links to Rfam database...	0.42	0.36	0.50	5	1118	6	0	5	1	9
RFA_00674	Hammerhead_1 links to Rfam database...	0.71	0.71	0.71	10	1114	5	0	4	1	4
RFA_00675	Hammerhead_1 links to Rfam database...	0.29	0.29	0.31	4	977	9	1	8	0	10
RFA_00677	Hammerhead_1 links to Rfam database...	0.42	0.43	0.43	6	976	9	0	8	1	8
RFA_00678	Hammerhead_1 links to Rfam database...	0.43	0.29	0.67	4	940	2	0	2	0	10
RFA_00680	Hammerhead_1 links to Rfam database...	0.74	0.71	0.77	10	1115	6	0	3	3	4
RFA_00684	Hammerhead_1 links to Rfam database...	0.66	0.64	0.69	9	977	5	0	4	1	5
RFA_00685	Hammerhead_1 links to Rfam database...	0.42	0.36	0.50	5	980	6	0	5	1	9
RFA_00695	Hammerhead_1 links to Rfam database...	0.56	0.50	0.64	7	7010	29	1	3	25	7
RFA_00703	Hammerhead_1 links to Rfam database...	0.67	0.64	0.69	9	4265	18	1	3	14	5
RFA_00704	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	981	9	0	9	0	14
RFA_00705	Hammerhead_1 links to Rfam database...	0.74	0.71	0.77	10	1022	4	0	3	1	4
RFA_00706	Hammerhead_1 links to Rfam database...	0.37	0.29	0.50	4	1027	4	0	4	0	10
RFA_00707	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	1026	9	3	6	0	14
RFA_00708	Hammerhead_1 links to Rfam database...	0.40	0.29	0.57	4	1028	3	0	3	0	10
RFA_00709	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	982	9	0	8	1	14
RFA_00710	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	981	9	0	9	0	14
RFA_00711	Hammerhead_1 links to Rfam database...	0.33	0.29	0.40	4	1025	7	0	6	1	10
RFA_00715	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	936	10	0	10	0	14
RFA_00716	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	935	11	0	11	0	14
RFA_00717	Hammerhead_1 links to Rfam database...	0.66	0.64	0.69	9	890	4	0	4	0	5
RFA_00730	s2m links to Rfam database...	0.69	0.67	0.73	8	892	4	1	2	1	4
RFA_00731	s2m links to Rfam database...	0.66	0.67	0.67	8	891	5	1	3	1	4
RFA_00733	s2m links to Rfam database...	0.66	0.67	0.67	8	891	5	1	3	1	4
RFA_00734	s2m links to Rfam database...	0.61	0.67	0.57	8	889	7	1	5	1	4
RFA_00736	s2m links to Rfam database...	0.66	0.67	0.67	8	891	5	1	3	1	4
RFA_00737	s2m links to Rfam database...	0.75	0.75	0.75	9	891	5	0	3	2	3
RFA_00745	s2m links to Rfam database...	0.66	0.67	0.67	8	934	5	1	3	1	4
RFA_00749	s2m links to Rfam database...	0.66	0.67	0.67	8	891	5	1	3	1	4
RFA_00758	s2m links to Rfam database...	0.96	0.92	1.00	11	892	0	0	0	0	1
RFA_00762	s2m links to Rfam database...	0.64	0.67	0.62	8	890	5	1	4	0	4
RFA_00763	s2m links to Rfam database...	0.75	0.75	0.75	9	891	4	0	3	1	3
RFA_00764	s2m links to Rfam database...	0.66	0.67	0.67	8	891	5	1	3	1	4
RFA_00765	s2m links to Rfam database...	0.75	0.75	0.75	9	891	5	0	3	2	3
RFA_00767	Corona_pk3 links to Rfam database...	0.63	0.56	0.71	10	1877	4	0	4	0	8
RFA_00768	Corona_pk3 links to Rfam database...	0.48	0.44	0.53	8	1876	7	1	6	0	10
RFA_00769	Corona_pk3 links to Rfam database...	0.52	0.56	0.50	10	1933	10	4	6	0	8
RFA_00770	Corona_pk3 links to Rfam database...	0.68	0.56	0.83	10	2004	5	0	2	3	8
RFA_00773	Corona_pk3 links to Rfam database...	0.55	0.56	0.56	10	1935	8	2	6	0	8
RFA_00779	Corona_pk3 links to Rfam database...	0.55	0.56	0.56	10	1935	8	3	5	0	8
RFA_00781	Gammaretro_CES links to Rfam database...	0.58	0.59	0.58	19	5017	14	2	12	0	13
RFA_00786	Gammaretro_CES links to Rfam database...	0.71	0.72	0.70	23	5017	10	2	8	0	9
RFA_00791	Gammaretro_CES links to Rfam database...	0.50	0.50	0.50	16	5119	16	5	11	0	16
RFA_00792	Gammaretro_CES links to Rfam database...	0.94	0.94	0.94	30	5018	4	0	2	2	2
RFA_00801	Gammaretro_CES links to Rfam database...	0.85	0.81	0.90	26	5021	4	0	3	1	6
RFA_00805	RNAIII links to Rfam database...	0.55	0.55	0.56	83	133237	71	6	60	5	67
RFA_00808	RydC links to Rfam database...	-0.01	0.00	0.00	0	2001	18	2	13	3	16
RFA_00809	RydC links to Rfam database...	0.36	0.38	0.35	6	2128	11	1	10	0	10
RFA_00814	R2_retro_el links to Rfam database...	0.79	0.80	0.77	33	25157	26	4	6	16	8
RFA_00815	R2_retro_el links to Rfam database...	0.65	0.71	0.60	29	24483	34	7	12	15	12
RFA_00816	R2_retro_el links to Rfam database...	0.59	0.66	0.53	27	23169	32	13	11	8	14
RFA_00817	R2_retro_el links to Rfam database...	0.10	0.12	0.08	5	21885	55	16	39	0	36
RFA_00818	R2_retro_el links to Rfam database...	0.59	0.63	0.55	26	20254	31	10	11	10	15
RFA_00819	R2_retro_el links to Rfam database...	0.96	0.95	0.98	39	27926	31	0	1	30	2
RFA_00820	bicoid_3 links to Rfam database...	0.90	0.91	0.89	146	151361	33	1	17	15	14
RFA_00830	bicoid_3 links to Rfam database...	0.50	0.47	0.53	72	152491	110	5	60	45	82
SPR_00020	tRNA links to Rfam database...	0.76	0.80	0.73	16	2679	8	2	4	2	4
SPR_00023	tRNA links to Rfam database...	0.49	0.52	0.46	11	2826	13	3	10	0	10
SPR_00064	tRNA links to Rfam database...	0.54	0.57	0.52	12	2827	11	2	9	0	9
SPR_00111	tRNA links to Rfam database...	0.55	0.57	0.55	12	2679	10	1	9	0	9
SPR_00113	tRNA links to Rfam database...	0.92	0.85	1.00	17	2758	1	0	0	1	3
SPR_00137	tRNA links to Rfam database...	0.56	0.62	0.52	13	2901	15	4	8	3	8
SPR_00273	tRNA links to Rfam database...	0.30	0.33	0.28	7	2825	19	2	16	1	14
SPR_00277	tRNA links to Rfam database...	0.98	0.95	1.00	20	2906	0	0	0	0	1
SPR_00279	tRNA links to Rfam database...	0.34	0.33	0.35	7	2906	13	6	7	0	14
SPR_00314	tRNA links to Rfam database...	0.68	0.71	0.65	15	2903	11	0	8	3	6
SPR_00394	tRNA links to Rfam database...	0.30	0.33	0.28	7	3630	20	8	10	2	14
SPR_00402	tRNA links to Rfam database...	0.93	0.86	1.00	18	2538	0	0	0	0	3
SPR_00434	tRNA links to Rfam database...	0.27	0.29	0.27	6	2828	16	7	9	0	15
SPR_00452	tRNA links to Rfam database...	0.53	0.57	0.50	12	2826	12	2	10	0	9
SPR_00595	tRNA links to Rfam database...	0.55	0.57	0.55	12	2753	10	2	8	0	9
SPR_00721	tRNA links to Rfam database...	0.48	0.52	0.44	11	2901	14	3	11	0	10
SPR_00816	tRNA links to Rfam database...	0.31	0.35	0.28	7	3461	21	5	13	3	13
SPR_00867	tRNA links to Rfam database...	0.52	0.57	0.48	12	2901	13	2	11	0	9
SPR_00912	tRNA links to Rfam database...	0.44	0.48	0.42	10	2979	17	3	11	3	11
SPR_01157	tRNA links to Rfam database...	0.73	0.76	0.70	16	2752	8	0	7	1	5
SRP_00001	Bacteria_large_SRP links to Rfam database...	0.86	0.88	0.85	35	6745	8	1	5	2	5
SRP_00002	Metazoa_SRP links to Rfam database...	0.84	0.82	0.86	84	45052	16	4	10	2	18
SRP_00006	Metazoa_SRP links to Rfam database...	0.86	0.84	0.88	85	45656	16	3	9	4	16
SRP_00008	Bacteria_small_SRP links to Rfam database...	1.00	1.00	1.00	25	2901	0	0	0	0	0
SRP_00009	Plant_SRP links to Rfam database...	0.52	0.49	0.56	50	46576	42	8	31	3	52
SRP_00011	Plant_SRP links to Rfam database...	0.52	0.50	0.55	52	46265	45	2	41	2	52
SRP_00012	Plant_SRP links to Rfam database...	0.71	0.68	0.74	69	46267	27	3	21	3	32
SRP_00015	Plant_SRP links to Rfam database...	0.57	0.56	0.59	55	46266	44	8	31	5	44
SRP_00016	Archaea_SRP links to Rfam database...	0.86	0.85	0.87	93	47788	16	2	12	2	16
SRP_00018	Fungi_SRP links to Rfam database...	0.71	0.69	0.74	56	38427	32	1	19	12	25
SRP_00019	Fungi_SRP links to Rfam database...	0.91	0.89	0.93	81	35959	11	4	2	5	10
SRP_00020	Bacteria_small_SRP links to Rfam database...	0.86	0.88	0.85	29	5531	5	1	4	0	4
SRP_00024	Bacteria_large_SRP links to Rfam database...	0.81	0.82	0.81	71	37587	18	5	12	1	16
SRP_00026	Bacteria_large_SRP links to Rfam database...	0.68	0.68	0.67	60	36767	37	2	27	8	28
SRP_00027	Bacteria_large_SRP links to Rfam database...	0.65	0.63	0.68	55	37047	27	3	23	1	32
SRP_00030	Bacteria_large_SRP links to Rfam database...	0.77	0.78	0.76	69	36765	24	4	18	2	19
SRP_00031	Bacteria_large_SRP links to Rfam database...	0.68	0.69	0.68	61	36225	34	2	27	5	28
SRP_00037	Bacteria_large_SRP links to Rfam database...	0.13	0.13	0.13	11	36499	75	6	69	0	76
SRP_00038	Bacteria_small_SRP links to Rfam database...	0.94	0.94	0.94	31	5017	2	0	2	0	2
SRP_00040	Bacteria_small_SRP links to Rfam database...	0.70	0.74	0.66	23	5530	14	1	11	2	8
SRP_00042	Bacteria_small_SRP links to Rfam database...	0.46	0.48	0.44	12	3978	17	1	14	2	13
SRP_00043	Bacteria_small_SRP links to Rfam database...	0.45	0.48	0.42	14	5017	22	4	15	3	15
SRP_00044	Bacteria_small_SRP links to Rfam database...	0.77	0.75	0.80	24	6075	9	1	5	3	8
SRP_00046	Bacteria_small_SRP links to Rfam database...	0.97	0.97	0.97	31	4721	2	0	1	1	1
SRP_00050	Metazoa_SRP links to Rfam database...	0.97	0.94	1.00	93	44757	3	0	0	3	6
SRP_00051	Bacteria_small_SRP links to Rfam database...	0.97	0.97	0.97	29	5430	3	0	1	2	1
SRP_00053	Metazoa_SRP links to Rfam database...	0.76	0.73	0.78	69	45062	30	0	19	11	25
SRP_00054	Bacteria_small_SRP links to Rfam database...	0.45	0.44	0.47	14	5535	16	0	16	0	18
SRP_00056	Bacteria_small_SRP links to Rfam database...	0.84	0.84	0.84	31	6404	6	1	5	0	6
SRP_00057	Bacteria_small_SRP links to Rfam database...	0.83	0.83	0.83	29	6293	7	1	5	1	6
SRP_00058	Bacteria_small_SRP links to Rfam database...	0.90	0.91	0.89	31	5743	8	1	3	4	3
SRP_00060	Metazoa_SRP links to Rfam database...	0.95	0.93	0.98	93	44456	8	0	2	6	7
SRP_00061	Metazoa_SRP links to Rfam database...	0.95	0.93	0.97	93	44754	10	0	3	7	7
SRP_00066	Metazoa_SRP links to Rfam database...	0.15	0.15	0.15	15	45349	87	8	79	0	85
SRP_00067	Bacteria_small_SRP links to Rfam database...	0.96	0.97	0.95	37	5739	2	1	1	0	1
SRP_00069	Fungi_SRP links to Rfam database...	0.78	0.76	0.79	65	34371	19	4	13	2	20
SRP_00070	Fungi_SRP links to Rfam database...	0.35	0.40	0.31	48	126600	117	31	77	9	73
SRP_00072	Bacteria_small_SRP links to Rfam database...	1.00	1.00	1.00	29	6299	1	0	0	1	0
SRP_00073	Fungi_SRP links to Rfam database...	0.71	0.75	0.67	53	38981	40	6	20	14	18
SRP_00074	Bacteria_small_SRP links to Rfam database...	0.39	0.41	0.36	12	6522	25	3	18	4	17
SRP_00075	Bacteria_small_SRP links to Rfam database...	0.82	0.79	0.84	27	5533	8	0	5	3	7
SRP_00077	Bacteria_small_SRP links to Rfam database...	0.21	0.22	0.21	8	6631	31	4	27	0	29
SRP_00079	Plant_SRP links to Rfam database...	0.53	0.55	0.51	48	41811	51	8	38	5	40
SRP_00081	Bacteria_small_SRP links to Rfam database...	0.68	0.74	0.62	23	5528	14	1	13	0	8
SRP_00084	Bacteria_small_SRP links to Rfam database...	0.85	0.85	0.85	29	5426	5	1	4	0	5
SRP_00085	Plant_SRP links to Rfam database...	0.64	0.63	0.65	64	45353	36	5	29	2	37
SRP_00086	Metazoa_SRP links to Rfam database...	0.94	0.93	0.96	93	44156	8	0	4	4	7
SRP_00087	Fungi_SRP links to Rfam database...	0.18	0.22	0.15	13	37317	76	23	48	5	45
SRP_00088	Bacteria_large_SRP links to Rfam database...	0.68	0.70	0.67	62	34098	31	4	27	0	27
SRP_00089	Bacteria_large_SRP links to Rfam database...	0.82	0.81	0.84	73	35691	14	1	13	0	17
SRP_00090	Bacteria_large_SRP links to Rfam database...	0.68	0.66	0.70	59	35427	27	2	23	2	31
SRP_00091	Fungi_SRP links to Rfam database...	0.83	0.84	0.82	80	52877	24	4	14	6	15
SRP_00094	Bacteria_small_SRP links to Rfam database...	0.86	0.88	0.84	21	4070	4	0	4	0	3
SRP_00095	Bacteria_small_SRP links to Rfam database...	0.81	0.84	0.78	21	3978	6	1	5	0	4
SRP_00098	Bacteria_small_SRP links to Rfam database...	0.64	0.65	0.63	24	6403	17	1	13	3	13
SRP_00099	Plant_SRP links to Rfam database...	0.59	0.60	0.58	57	44752	43	7	34	2	38
SRP_00102	Metazoa_SRP links to Rfam database...	0.87	0.85	0.89	86	44454	13	1	10	2	15
SRP_00103	Metazoa_SRP links to Rfam database...	0.85	0.83	0.86	85	45352	16	0	14	2	17
SRP_00104	Fungi_SRP links to Rfam database...	0.47	0.52	0.42	36	34368	56	8	41	7	33
SRP_00105	Bacteria_small_SRP links to Rfam database...	0.38	0.38	0.39	13	5532	20	3	17	0	21
SRP_00106	Bacteria_large_SRP links to Rfam database...	0.45	0.52	0.39	13	5220	23	9	11	3	12
SRP_00107	Bacteria_small_SRP links to Rfam database...	0.13	0.16	0.11	3	3628	26	6	18	2	16
SRP_00117	Metazoa_SRP links to Rfam database...	0.83	0.81	0.85	83	45353	16	3	12	1	19
SRP_00121	Bacteria_small_SRP links to Rfam database...	0.80	0.80	0.80	20	4253	6	0	5	1	5
SRP_00123	Metazoa_SRP links to Rfam database...	0.86	0.84	0.89	76	36500	13	3	6	4	15
SRP_00124	Metazoa_SRP links to Rfam database...	0.54	0.52	0.56	44	37050	38	4	30	4	41
SRP_00127	Fungi_SRP links to Rfam database...	0.73	0.72	0.75	86	72275	34	8	21	5	33
SRP_00128	Bacteria_small_SRP links to Rfam database...	0.76	0.81	0.73	29	6746	12	1	10	1	7
SRP_00130	Archaea_SRP links to Rfam database...	0.24	0.24	0.24	23	49676	71	10	61	0	74
SRP_00132	Bacteria_small_SRP links to Rfam database...	0.65	0.69	0.63	20	4819	15	0	12	3	9
SRP_00134	Bacteria_large_SRP links to Rfam database...	0.51	0.55	0.48	16	5962	23	3	14	6	13
SRP_00136	Fungi_SRP links to Rfam database...	0.38	0.44	0.33	31	44160	69	20	42	7	40
SRP_00137	Bacteria_small_SRP links to Rfam database...	0.74	0.84	0.66	21	4154	13	4	7	2	4
SRP_00141	Bacteria_small_SRP links to Rfam database...	0.91	0.90	0.93	37	6288	3	1	2	0	4
SRP_00142	Archaea_SRP links to Rfam database...	0.57	0.59	0.55	55	45956	48	7	38	3	38
SRP_00143	Archaea_SRP links to Rfam database...	0.86	0.85	0.86	86	49670	20	1	13	6	15
SRP_00144	Archaea_SRP links to Rfam database...	0.74	0.74	0.74	70	46571	31	1	23	7	24
SRP_00145	Bacteria_small_SRP links to Rfam database...	0.96	0.98	0.95	39	6287	2	1	1	0	1
SRP_00146	Bacteria_small_SRP links to Rfam database...	0.93	0.94	0.92	34	5216	3	1	2	0	2
SRP_00148	Fungi_SRP links to Rfam database...	0.25	0.26	0.24	23	49989	84	9	65	10	64
SRP_00152	Plant_SRP links to Rfam database...	0.66	0.65	0.68	67	45654	33	1	31	1	36
SRP_00153	Plant_SRP links to Rfam database...	0.75	0.72	0.78	77	46872	24	6	16	2	30
SRP_00157	Fungi_SRP links to Rfam database...	0.38	0.42	0.35	30	44167	63	15	41	7	42
SRP_00158	Fungi_SRP links to Rfam database...	0.33	0.38	0.28	44	124095	124	42	70	12	71
SRP_00160	Fungi_SRP links to Rfam database...	0.37	0.37	0.36	48	86188	84	10	74	0	82
SRP_00161	Bacteria_small_SRP links to Rfam database...	0.89	0.91	0.87	20	2827	3	0	3	0	2
SRP_00162	Bacteria_small_SRP links to Rfam database...	0.89	0.91	0.88	21	2902	4	0	3	1	2
SRP_00163	Bacteria_small_SRP links to Rfam database...	0.76	0.81	0.72	21	3457	8	2	6	0	5
SRP_00164	Bacteria_small_SRP links to Rfam database...	0.96	0.97	0.94	34	6867	3	1	1	1	1
SRP_00170	Bacteria_small_SRP links to Rfam database...	0.55	0.56	0.54	14	4069	13	0	12	1	11
SRP_00171	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	45348	103	15	88	0	88
SRP_00173	Bacteria_large_SRP links to Rfam database...	0.85	0.82	0.87	74	38141	18	0	11	7	16
SRP_00174	Bacteria_large_SRP links to Rfam database...	0.74	0.76	0.73	65	38692	28	7	17	4	21
SRP_00175	Fungi_SRP links to Rfam database...	0.51	0.52	0.51	44	44464	49	8	35	6	40
SRP_00178	Plant_SRP links to Rfam database...	0.83	0.78	0.88	80	45662	13	1	10	2	22
SRP_00179	Plant_SRP links to Rfam database...	0.91	0.87	0.95	91	45960	9	1	4	4	14
SRP_00181	Plant_SRP links to Rfam database...	0.33	0.31	0.35	32	45965	59	1	58	0	70
SRP_00182	Plant_SRP links to Rfam database...	0.77	0.74	0.80	75	45962	20	3	16	1	26
SRP_00184	Plant_SRP links to Rfam database...	0.63	0.60	0.66	60	45965	35	7	24	4	40
SRP_00188	Plant_SRP links to Rfam database...	0.18	0.18	0.18	14	31047	64	9	55	0	65
SRP_00194	Bacteria_small_SRP links to Rfam database...	0.77	0.81	0.74	17	3217	6	0	6	0	4
SRP_00197	Archaea_SRP links to Rfam database...	0.49	0.48	0.51	48	49361	49	4	42	3	53
SRP_00198	Archaea_SRP links to Rfam database...	0.62	0.60	0.63	62	50942	40	2	34	4	41
SRP_00199	Archaea_SRP links to Rfam database...	0.26	0.26	0.26	27	50938	77	4	71	2	78
SRP_00200	Bacteria_small_SRP links to Rfam database...	0.84	0.86	0.82	31	6865	9	1	6	2	5
SRP_00201	Archaea_SRP links to Rfam database...	0.85	0.84	0.85	93	47786	18	5	11	2	18
SRP_00202	Archaea_SRP links to Rfam database...	0.85	0.85	0.85	99	54169	21	2	15	4	18
SRP_00203	Archaea_SRP links to Rfam database...	0.73	0.75	0.72	79	48718	37	3	28	6	26
SRP_00204	Archaea_SRP links to Rfam database...	0.78	0.77	0.78	79	49040	24	4	18	2	23
SRP_00206	Archaea_SRP links to Rfam database...	0.82	0.82	0.82	89	47786	21	5	15	1	19
SRP_00208	Archaea_SRP links to Rfam database...	0.67	0.67	0.67	68	46564	35	7	26	2	33
SRP_00209	Bacteria_small_SRP links to Rfam database...	0.80	0.81	0.79	22	4628	6	0	6	0	5
SRP_00213	Bacteria_small_SRP links to Rfam database...	0.35	0.40	0.31	10	4154	22	5	17	0	15
SRP_00215	Bacteria_small_SRP links to Rfam database...	0.82	0.80	0.83	20	3216	4	0	4	0	5
SRP_00216	Bacteria_small_SRP links to Rfam database...	0.95	0.96	0.93	26	3375	3	1	1	1	1
SRP_00217	Bacteria_small_SRP links to Rfam database...	0.58	0.58	0.58	14	3297	11	0	10	1	10
SRP_00219	Bacteria_small_SRP links to Rfam database...	0.94	0.96	0.92	22	3297	3	0	2	1	1
SRP_00222	Bacteria_small_SRP links to Rfam database...	0.94	0.96	0.92	24	3055	3	1	1	1	1
SRP_00227	Bacteria_small_SRP links to Rfam database...	0.95	0.97	0.94	30	5119	2	1	1	0	1
SRP_00228	Metazoa_SRP links to Rfam database...	0.97	0.96	0.98	91	45358	10	0	2	8	4
SRP_00229	Bacteria_small_SRP links to Rfam database...	0.43	0.44	0.41	12	5224	17	5	12	0	15
SRP_00230	Fungi_SRP links to Rfam database...	0.80	0.81	0.79	73	39529	23	3	16	4	17
SRP_00231	Bacteria_small_SRP links to Rfam database...	0.87	0.88	0.86	30	5425	5	1	4	0	4
SRP_00233	Bacteria_small_SRP links to Rfam database...	0.97	0.94	1.00	31	5120	0	0	0	0	2
SRP_00234	Bacteria_large_SRP links to Rfam database...	0.77	0.77	0.78	66	36230	25	1	18	6	20
SRP_00239	Plant_SRP links to Rfam database...	0.21	0.22	0.20	20	50304	80	15	64	1	73
SRP_00240	Plant_SRP links to Rfam database...	0.73	0.73	0.73	74	48104	34	3	24	7	28
SRP_00241	Plant_SRP links to Rfam database...	0.54	0.59	0.51	48	45961	49	11	36	2	34
SRP_00243	Bacteria_small_SRP links to Rfam database...	0.97	0.94	1.00	29	5122	1	0	0	1	2
SRP_00244	Bacteria_small_SRP links to Rfam database...	0.92	0.90	0.95	35	6866	3	1	1	1	4
SRP_00247	Metazoa_SRP links to Rfam database...	0.50	0.54	0.47	47	47177	58	9	45	4	40
SRP_00250	Bacteria_small_SRP links to Rfam database...	0.74	0.75	0.73	27	6749	13	1	9	3	9
SRP_00251	Bacteria_small_SRP links to Rfam database...	0.70	0.72	0.68	26	6983	12	1	11	0	10
SRP_00252	Metazoa_SRP links to Rfam database...	0.62	0.64	0.59	57	49045	42	12	27	3	32
SRP_00253	Metazoa_SRP links to Rfam database...	0.65	0.67	0.63	60	49360	40	6	29	5	30
SRP_00254	Fungi_SRP links to Rfam database...	0.49	0.54	0.45	33	32311	46	12	29	5	28
SRP_00255	Archaea_SRP links to Rfam database...	0.60	0.62	0.59	58	47487	47	3	38	6	36
SRP_00257	Metazoa_SRP links to Rfam database...	0.86	0.87	0.85	94	50929	19	4	13	2	14
SRP_00260	Metazoa_SRP links to Rfam database...	0.75	0.78	0.72	78	47787	32	8	22	2	22
SRP_00265	Fungi_SRP links to Rfam database...	0.60	0.66	0.55	48	41240	51	9	31	11	25
SRP_00266	Bacteria_small_SRP links to Rfam database...	0.72	0.72	0.72	21	4627	9	1	7	1	8
SRP_00267	Metazoa_SRP links to Rfam database...	0.80	0.80	0.79	77	44454	26	3	17	6	19
SRP_00268	Bacteria_small_SRP links to Rfam database...	0.47	0.48	0.46	13	4158	15	4	11	0	14
SRP_00269	Bacteria_small_SRP links to Rfam database...	0.42	0.42	0.42	14	5017	19	3	16	0	19
SRP_00270	Bacteria_small_SRP links to Rfam database...	0.43	0.45	0.41	14	4622	20	2	18	0	17
SRP_00271	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	3215	25	3	22	0	24
SRP_00273	Bacteria_small_SRP links to Rfam database...	0.91	0.93	0.90	37	6745	6	1	3	2	3
SRP_00274	Bacteria_small_SRP links to Rfam database...	0.96	0.97	0.95	37	6864	3	1	1	1	1
SRP_00276	Archaea_SRP links to Rfam database...	0.86	0.85	0.86	94	50612	16	5	10	1	16
SRP_00278	Archaea_SRP links to Rfam database...	0.72	0.72	0.72	76	45950	32	4	26	2	29
SRP_00282	Metazoa_SRP links to Rfam database...	0.32	0.37	0.29	23	43285	66	19	38	9	40
SRP_00285	Bacteria_small_SRP links to Rfam database...	0.91	0.87	0.96	26	3714	1	0	1	0	4
SRP_00286	Fungi_SRP links to Rfam database...	0.64	0.63	0.66	110	136859	67	3	54	10	64
SRP_00287	Fungi_SRP links to Rfam database...	0.65	0.65	0.65	106	141615	70	8	49	13	56
SRP_00290	Fungi_SRP links to Rfam database...	0.73	0.73	0.73	98	100441	49	3	34	12	37
SRP_00292	Fungi_SRP links to Rfam database...	0.65	0.62	0.67	108	137389	60	1	52	7	65
SRP_00294	Fungi_SRP links to Rfam database...	0.35	0.34	0.36	57	129126	106	11	92	3	110
SRP_00295	Bacteria_small_SRP links to Rfam database...	0.93	0.92	0.95	35	6866	4	1	1	2	3
SRP_00299	Metazoa_SRP links to Rfam database...	0.68	0.68	0.69	67	44156	31	3	27	1	32
SRP_00300	Metazoa_SRP links to Rfam database...	0.89	0.88	0.89	83	44160	14	0	10	4	11
SRP_00301	Fungi_SRP links to Rfam database...	0.85	0.84	0.86	72	32556	18	1	11	6	14
SRP_00302	Fungi_SRP links to Rfam database...	0.40	0.41	0.39	33	41532	61	5	46	10	48
SRP_00303	Bacteria_small_SRP links to Rfam database...	0.69	0.72	0.66	23	6635	12	1	11	0	9
SRP_00308	Bacteria_large_SRP links to Rfam database...	0.58	0.58	0.59	51	36228	39	9	27	3	37
SRP_00310	Bacteria_small_SRP links to Rfam database...	0.89	0.91	0.88	21	2902	4	0	3	1	2
SRP_00312	Bacteria_small_SRP links to Rfam database...	0.36	0.37	0.36	10	4158	18	4	14	0	17
SRP_00315	Bacteria_small_SRP links to Rfam database...	0.87	0.87	0.87	20	2903	3	0	3	0	3
SRP_00317	Metazoa_SRP links to Rfam database...	0.94	0.89	0.99	87	45062	9	0	1	8	11
SRP_00318	Bacteria_small_SRP links to Rfam database...	0.87	0.87	0.87	20	2980	3	0	3	0	3
SRP_00321	Archaea_SRP links to Rfam database...	0.77	0.77	0.78	83	47479	27	3	21	3	25
SRP_00322	Archaea_SRP links to Rfam database...	0.62	0.62	0.62	68	48406	43	5	37	1	41
SRP_00323	Archaea_SRP links to Rfam database...	0.92	0.92	0.93	98	47173	11	0	7	4	9
SRP_00324	Bacteria_small_SRP links to Rfam database...	0.57	0.62	0.53	18	5322	16	5	11	0	11
SRP_00325	Bacteria_small_SRP links to Rfam database...	1.00	1.00	1.00	33	4338	0	0	0	0	0
SRP_00326	Bacteria_small_SRP links to Rfam database...	0.55	0.55	0.55	17	5019	14	3	11	0	14
SRP_00328	Metazoa_SRP links to Rfam database...	0.64	0.66	0.63	56	39532	38	8	25	5	29
SRP_00329	Metazoa_SRP links to Rfam database...	0.75	0.74	0.75	63	39819	24	3	18	3	22
SRP_00330	Archaea_SRP links to Rfam database...	0.42	0.42	0.42	40	49991	58	2	53	3	55
SRP_00331	Metazoa_SRP links to Rfam database...	0.66	0.66	0.66	57	37589	32	2	27	3	30
SRP_00332	Archaea_SRP links to Rfam database...	0.80	0.81	0.80	86	50295	25	6	16	3	20
SRP_00333	Bacteria_small_SRP links to Rfam database...	0.86	0.85	0.88	29	5118	4	0	4	0	5
SRP_00335	Bacteria_large_SRP links to Rfam database...	0.32	0.44	0.23	17	35172	76	26	30	20	22
SRP_00337	Bacteria_large_SRP links to Rfam database...	0.73	0.71	0.75	65	35424	24	2	20	2	26
SRP_00338	Bacteria_small_SRP links to Rfam database...	0.94	0.94	0.94	34	5424	2	0	2	0	2
SRP_00339	Archaea_SRP links to Rfam database...	0.47	0.48	0.46	45	44453	57	6	47	4	49
SRP_00340	Metazoa_SRP links to Rfam database...	0.55	0.59	0.52	48	41236	46	8	36	2	34
SRP_00341	Bacteria_small_SRP links to Rfam database...	0.74	0.74	0.74	23	4722	8	0	8	0	8
SRP_00342	Bacteria_small_SRP links to Rfam database...	0.57	0.60	0.56	15	3978	17	1	11	5	10
SRP_00347	Metazoa_SRP links to Rfam database...	0.78	0.78	0.79	75	46570	26	4	16	6	21
SRP_00350	Bacteria_small_SRP links to Rfam database...	0.34	0.33	0.35	9	3890	17	2	15	0	18
SRP_00356	Bacteria_small_SRP links to Rfam database...	0.56	0.57	0.57	17	5020	13	1	12	0	13
SRP_00357	Bacteria_small_SRP links to Rfam database...	0.93	0.92	0.94	33	5321	3	1	1	1	3
SRP_00358	Bacteria_small_SRP links to Rfam database...	0.93	0.91	0.94	32	6294	3	1	1	1	3
SRP_00361	Plant_SRP links to Rfam database...	0.71	0.71	0.71	64	41815	36	3	23	10	26
SRP_00363	Bacteria_small_SRP links to Rfam database...	0.95	0.97	0.94	29	4722	4	0	2	2	1
SRP_00365	Bacteria_small_SRP links to Rfam database...	0.91	0.89	0.92	24	3377	2	0	2	0	3
SRP_00367	Bacteria_small_SRP links to Rfam database...	0.96	0.97	0.94	34	6750	2	1	1	0	1
SRP_00368	Metazoa_SRP links to Rfam database...	0.96	0.95	0.98	93	43861	8	0	2	6	5
SRP_00369	Bacteria_small_SRP links to Rfam database...	0.84	0.83	0.85	29	5744	7	1	4	2	6
SRP_00371	Fungi_SRP links to Rfam database...	0.78	0.78	0.77	64	36232	23	2	17	4	18
SRP_00382	Fungi_SRP links to Rfam database...	0.55	0.55	0.56	93	141612	85	7	66	12	77
SRP_00383	Bacteria_small_SRP links to Rfam database...	0.12	0.13	0.13	3	3216	21	3	18	0	21
TMR_00173	tmRNA links to Rfam database...	0.31	0.36	0.28	15	42141	66	16	23	27	27
TMR_00357	tmRNA links to Rfam database...	0.40	0.41	0.39	38	82931	75	22	37	16	54
TMR_00431	tmRNA links to Rfam database...	0.68	0.69	0.68	38	51947	63	8	10	45	17
TMR_00601	tmRNA links to Rfam database...	0.56	0.57	0.55	24	58952	77	2	18	57	18
TMR_00603	tmRNA links to Rfam database...	0.67	0.70	0.65	30	60332	76	7	9	60	13
TMR_00611	tmRNA links to Rfam database...	0.59	0.62	0.57	63	61315	50	14	33	3	39
TMR_00686	tmRNA links to Rfam database...	0.45	0.45	0.44	49	71142	73	14	48	11	59
TMR_00696	tmRNA links to Rfam database...	0.22	0.23	0.21	26	84954	107	28	70	9	88

^top

Performance of Mastr(seed) - scored lower in this pairwise comparison

1. Total counts & total scores for Mastr(seed)

Total Base Pair Counts
Total TP	736
Total TN	29501160
Total FP	234
Total FP CONTRA	22
Total FP INCONS	140
Total FP COMP	72
Total FN	46475

Total Scores
MCC	0.113
Average MCC ± 95% Confidence Intervals	0.062 ± 0.016
Sensitivity	0.016
Positive Predictive Value	0.820
Nr of predictions	644

^top

2. Individual counts for Mastr(seed) [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00001	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	34191	0	0	0	0	75
ASE_00002	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	35511	0	0	0	0	73
ASE_00004	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	47895	0	0	0	0	97
ASE_00005	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	57970	0	0	0	0	117
ASE_00006	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	47586	0	0	0	0	93
ASE_00009	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	26106	0	0	0	0	67
ASE_00010	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	49770	0	0	0	0	82
ASE_00012	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	73920	0	0	0	0	123
ASE_00014	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	54285	0	0	0	0	106
ASE_00017	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	51040	0	0	0	0	64
ASE_00018	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	80601	0	0	0	0	134
ASE_00020	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	73920	0	0	0	0	126
ASE_00021	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	104196	0	0	0	0	160
ASE_00022	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	83028	0	0	0	0	124
ASE_00025	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	78606	0	0	0	0	71
ASE_00026	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	59685	0	0	0	0	110
ASE_00028	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	84666	0	0	0	0	126
ASE_00029	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	83028	0	0	0	0	122
ASE_00032	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	80200	0	0	0	0	118
ASE_00035	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	70500	0	0	0	0	118
ASE_00036	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	75855	0	0	0	0	132
ASE_00037	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	59340	0	0	0	0	110
ASE_00038	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	53628	0	0	0	0	101
ASE_00041	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	57630	0	0	0	0	108
ASE_00042	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	90100	0	0	0	0	145
ASE_00044	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	54615	0	0	0	0	105
ASE_00045	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	47278	0	0	0	0	80
ASE_00046	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	50403	0	0	0	0	103
ASE_00047	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	74305	0	0	0	0	130
ASE_00052	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	61425	0	0	0	0	112
ASE_00053	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	79401	0	0	0	0	133
ASE_00064	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	45451	0	0	0	0	89
ASE_00068	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	37675	0	0	0	0	85
ASE_00069	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	83028	0	0	0	0	140
ASE_00074	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	67896	0	0	0	0	119
ASE_00076	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	68265	0	0	0	0	118
ASE_00077	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	45150	0	0	0	0	86
ASE_00078	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	43071	0	0	0	0	83
ASE_00079	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	55611	0	0	0	0	100
ASE_00081	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	49770	0	0	0	0	97
ASE_00082	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	70500	0	0	0	0	116
ASE_00084	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	53628	0	0	0	0	99
ASE_00090	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	55611	0	0	0	0	101
ASE_00092	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	63546	0	0	0	0	113
ASE_00096	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	63546	0	0	0	0	115
ASE_00099	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	64620	0	0	0	0	120
ASE_00100	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	82215	0	0	0	0	76
ASE_00102	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	117855	0	0	0	0	166
ASE_00104	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	64261	0	0	0	0	119
ASE_00105	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	64261	0	0	0	0	111
ASE_00108	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	46971	0	0	0	0	63
ASE_00111	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	50086	0	0	0	0	57
ASE_00112	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	75466	0	0	0	0	116
ASE_00114	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	45451	0	0	0	0	77
ASE_00116	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	31626	0	0	0	0	66
ASE_00118	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	60726	0	0	0	0	102
ASE_00119	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	62835	0	0	0	0	108
ASE_00120	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	46971	0	0	0	0	94
ASE_00121	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	45150	0	0	0	0	92
ASE_00123	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	38503	0	0	0	0	85
ASE_00125	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	39340	0	0	0	0	88
ASE_00126	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	40470	0	0	0	0	82
ASE_00129	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	62835	0	0	0	0	111
ASE_00131	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	39340	0	0	0	0	85
ASE_00132	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	50403	0	0	0	0	95
ASE_00135	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	63190	0	0	0	0	109
ASE_00138	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	40470	0	0	0	0	81
ASE_00142	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	67161	0	0	0	0	122
ASE_00145	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	70125	0	0	0	0	111
ASE_00146	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	70876	0	0	0	0	124
ASE_00148	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	112575	0	0	0	0	154
ASE_00151	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	52003	0	0	0	0	98
ASE_00153	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	57630	0	0	0	0	73
ASE_00154	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	65341	0	0	0	0	107
ASE_00155	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	93528	0	0	0	0	142
ASE_00161	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	53628	0	0	0	0	87
ASE_00168	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	60726	0	0	0	0	64
ASE_00169	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	57291	0	0	0	0	107
ASE_00170	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	48828	0	0	0	0	93
ASE_00171	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	48516	0	0	0	0	94
ASE_00172	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	58996	0	0	0	0	106
ASE_00176	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	60031	0	0	0	0	110
ASE_00179	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	44253	0	0	0	0	84
ASE_00180	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	51360	0	0	0	0	100
ASE_00181	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	57630	0	0	0	0	106
ASE_00182	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	84255	0	0	0	0	136
ASE_00183	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	61425	0	0	0	0	113
ASE_00184	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	54615	0	0	0	0	102
ASE_00185	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	73536	0	0	0	0	128
ASE_00186	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	79003	0	0	0	0	132
ASE_00187	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	68635	0	0	0	0	115
ASE_00189	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	63190	0	0	0	0	102
ASE_00190	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	45451	0	0	0	0	90
ASE_00191	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	29646	0	0	0	0	61
ASE_00192	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	84666	0	0	0	0	133
ASE_00194	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	73536	0	0	0	0	119
ASE_00196	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	31626	0	0	0	0	75
ASE_00197	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	89253	0	0	0	0	145
ASE_00198	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	52650	0	0	0	0	102
ASE_00203	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46665	0	0	0	0	96
ASE_00204	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	67896	0	0	0	0	112
ASE_00205	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	46056	0	0	0	0	90
ASE_00209	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	43071	0	0	0	0	88
ASE_00210	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	27261	0	0	0	0	65
ASE_00212	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	93961	0	0	0	0	148
ASE_00213	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	27261	0	0	0	0	66
ASE_00214	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	56280	0	0	0	0	103
ASE_00215	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	48516	0	0	0	0	99
ASE_00216	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	39340	0	0	0	0	82
ASE_00217	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	40470	0	0	0	0	90
ASE_00221	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	64620	0	0	0	0	117
ASE_00222	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	112101	0	0	0	0	157
ASE_00227	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	79003	0	0	0	0	133
ASE_00228	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46971	0	0	0	0	86
ASE_00229	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	42486	0	0	0	0	87
ASE_00231	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	47895	0	0	0	0	96
ASE_00232	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	38503	0	0	0	0	84
ASE_00234	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	75466	0	0	0	0	129
ASE_00237	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	45753	0	0	0	0	56
ASE_00238	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	64261	0	0	0	0	114
ASE_00240	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46665	0	0	0	0	93
ASE_00241	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	43956	0	0	0	0	87
ASE_00242	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	61075	0	0	0	0	112
ASE_00245	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	55278	0	0	0	0	78
ASE_00246	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	48205	0	0	0	0	67
ASE_00247	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	54285	0	0	0	0	64
ASE_00248	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	62481	0	0	0	0	114
ASE_00250	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	79003	0	0	0	0	131
ASE_00251	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	17766	0	0	0	0	43
ASE_00254	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	36856	0	0	0	0	82
ASE_00255	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	74691	0	0	0	0	130
ASE_00257	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	51040	0	0	0	0	97
ASE_00258	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	26796	0	0	0	0	54
ASE_00259	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	73153	0	0	0	0	121
ASE_00263	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	70500	0	0	0	0	120
ASE_00264	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	49141	0	0	0	0	100
ASE_00267	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	45150	0	0	0	0	88
ASE_00270	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	72390	0	0	0	0	128
ASE_00274	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	55611	0	0	0	0	103
ASE_00277	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	48205	0	0	0	0	91
ASE_00279	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	53301	0	0	0	0	101
ASE_00280	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	52003	0	0	0	0	98
ASE_00281	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	44551	0	0	0	0	88
ASE_00282	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	77815	0	0	0	0	127
ASE_00283	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	61776	0	0	0	0	107
ASE_00284	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	58311	0	0	0	0	108
ASE_00285	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	69006	0	0	0	0	122
ASE_00286	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46665	0	0	0	0	92
ASE_00287	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	54946	0	0	0	0	103
ASE_00288	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46056	0	0	0	0	93
ASE_00289	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	101025	0	0	0	0	157
ASE_00292	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	81810	0	0	0	0	138
ASE_00294	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	114481	0	0	0	0	171
ASE_00295	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	73920	0	0	0	0	131
ASE_00296	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	91806	0	0	0	0	145
ASE_00297	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	52975	0	0	0	0	98
ASE_00298	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	67528	0	0	0	0	113
ASE_00299	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	49455	0	0	0	0	100
ASE_00303	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	67896	0	0	0	0	95
ASE_00305	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	54615	0	0	0	0	85
ASE_00313	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	62481	0	0	0	0	89
ASE_00316	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	107880	0	0	0	0	98
ASE_00318	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	80200	0	0	0	0	118
ASE_00321	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	54615	0	0	0	0	88
ASE_00327	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	57291	0	0	0	0	89
ASE_00328	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	72771	0	0	0	0	112
ASE_00329	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	40755	0	0	0	0	63
ASE_00330	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	56280	0	0	0	0	90
ASE_00332	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	81810	0	0	0	0	138
ASE_00335	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	75466	0	0	0	0	116
ASE_00337	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	39340	0	0	0	0	71
ASE_00338	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	66430	0	0	0	0	98
ASE_00339	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	80200	0	0	0	0	119
ASE_00340	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46056	0	0	0	0	85
ASE_00342	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	62481	0	0	0	0	115
ASE_00343	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	83436	0	0	0	0	113
ASE_00346	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	48205	0	0	0	0	97
ASE_00353	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	57970	0	0	0	0	107
ASE_00359	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	42778	0	0	0	0	80
ASE_00360	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	29403	0	0	0	0	65
ASE_00361	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	75466	0	0	0	0	127
ASE_00362	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	48205	0	0	0	0	91
ASE_00363	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	51360	0	0	0	0	94
ASE_00364	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	54285	0	0	0	0	105
ASE_00366	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	58653	0	0	0	0	98
ASE_00367	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	43071	0	0	0	0	86
ASE_00369	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	55945	0	0	0	0	107
ASE_00370	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	41905	0	0	0	0	84
ASE_00372	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	52003	0	0	0	0	100
ASE_00374	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	44850	0	0	0	0	88
ASE_00375	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	60378	0	0	0	0	110
ASE_00376	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	56953	0	0	0	0	105
ASE_00377	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	57630	0	0	0	0	107
ASE_00379	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46056	0	0	0	0	89
ASE_00380	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	54946	0	0	0	0	99
ASE_00382	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	41905	0	0	0	0	84
ASE_00383	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	54615	0	0	0	0	105
ASE_00384	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	48516	0	0	0	0	92
ASE_00385	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	41905	0	0	0	0	81
ASE_00386	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	50403	0	0	0	0	96
ASE_00387	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	55945	0	0	0	0	104
ASE_00388	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	45753	0	0	0	0	89
ASE_00390	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	42195	0	0	0	0	85
ASE_00393	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	47895	0	0	0	0	93
ASE_00394	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46971	0	0	0	0	93
ASE_00395	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	41616	0	0	0	0	84
ASE_00396	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	41616	0	0	0	0	83
ASE_00397	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	54615	0	0	0	0	105
ASE_00398	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	55945	0	0	0	0	104
ASE_00400	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	57970	0	0	0	0	106
ASE_00401	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	77028	0	0	0	0	126
ASE_00402	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	42486	0	0	0	0	85
ASE_00403	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	55945	0	0	0	0	107
ASE_00404	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	43071	0	0	0	0	85
ASE_00406	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	48828	0	0	0	0	94
ASE_00411	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	49455	0	0	0	0	89
ASE_00412	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	58311	0	0	0	0	105
ASE_00413	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	44551	0	0	0	0	81
ASE_00414	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46360	0	0	0	0	95
ASE_00415	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	54946	0	0	0	0	103
ASE_00416	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	77421	0	0	0	0	127
ASE_00417	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	54615	0	0	0	0	100
ASE_00418	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	38781	0	0	0	0	75
ASE_00419	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	54946	0	0	0	0	103
ASE_00420	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	43365	0	0	0	0	63
ASE_00422	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46971	0	0	0	0	94
ASE_00423	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	56953	0	0	0	0	109
ASE_00426	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	61075	0	0	0	0	108
ASE_00427	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	40755	0	0	0	0	46
ASE_00428	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	76636	0	0	0	0	125
ASE_00430	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46971	0	0	0	0	97
ASE_00431	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46360	0	0	0	0	95
ASE_00434	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	68265	0	0	0	0	110
ASE_00437	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	79401	0	0	0	0	135
ASE_00441	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	64261	0	0	0	0	112
ASE_00443	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	26796	0	0	0	0	50
ASE_00447	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	60378	0	0	0	0	116
ASE_00448	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	64261	0	0	0	0	112
ASE_00451	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	70876	0	0	0	0	125
ASE_00454	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	43365	0	0	0	0	63
CRW_00013	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	103740	0	0	0	0	115
CRW_00016	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	77421	0	0	0	0	120
CRW_00306	SSU_rRNA_eukarya links to Rfam database...	0.00	0.00	0.00	0	1445850	0	0	0	0	462
CRW_00379	SSU_rRNA_eukarya links to Rfam database...	0.00	0.00	0.00	0	2126953	0	0	0	0	534
CRW_00610	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	36315	0	0	0	0	81
CRW_00613	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	34980	0	0	0	0	78
CRW_00614	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	121771	0	0	0	0	57
CRW_00618	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	56280	0	0	0	0	61
CRW_00619	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	165025	0	0	0	0	73
CRW_00620	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	150975	0	0	0	0	63
CRW_00621	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	153181	0	0	0	0	71
CRW_00623	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	129795	0	0	0	0	83
CRW_00633	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	63546	0	0	0	0	106
CRW_00634	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	64620	0	0	0	0	94
CRW_00670	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	70125	0	0	0	0	120
CRW_00671	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	62835	0	0	0	0	117
CRW_00672	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	72390	0	0	0	0	111
CRW_00674	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	83436	0	0	0	0	124
CRW_00676	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	93528	0	0	0	0	115
CRW_00692	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	68635	0	0	0	0	90
CRW_00800	SSU_rRNA_eukarya links to Rfam database...	0.00	0.00	0.00	0	1401975	0	0	0	0	470
CRW_01484	5S_rRNA links to Rfam database...	0.00	0.00	0.00	0	7503	0	0	0	0	39
CRW_01499	5S_rRNA links to Rfam database...	0.00	0.00	0.00	0	8001	0	0	0	0	41
CRW_01507	5S_rRNA links to Rfam database...	0.00	0.00	0.00	0	7503	0	0	0	0	41
CRW_01535	5S_rRNA links to Rfam database...	0.00	0.00	0.00	0	7140	0	0	0	0	37
CRW_01590	5S_rRNA links to Rfam database...	0.00	0.00	0.00	0	7140	0	0	0	0	37
CRW_01603	5S_rRNA links to Rfam database...	0.00	0.00	0.00	0	7140	0	0	0	0	37
PDB_00005	Tymo_tRNA-like links to Rfam database...	0.60	0.43	0.86	6	939	2	0	1	1	8
PDB_00012	mir-TAR links to Rfam database...	0.00	0.00	0.00	0	406	0	0	0	0	7
PDB_00070	tRNA links to Rfam database...	0.00	0.00	0.00	0	2850	0	0	0	0	24
PDB_00213	Gammaretro_CES links to Rfam database...	0.81	0.73	0.91	30	5017	3	0	3	0	11
PDB_00392	tRNA links to Rfam database...	0.00	0.00	0.00	0	2850	0	0	0	0	21
PDB_00553	mir-TAR links to Rfam database...	0.00	0.00	0.00	0	465	0	0	0	0	11
PDB_00716	HDV_ribozyme links to Rfam database...	0.00	0.00	0.00	0	2701	0	0	0	0	23
PDB_00741	Entero_5_CRE links to Rfam database...	0.00	0.00	0.00	0	703	0	0	0	0	17
PDB_00810	s2m links to Rfam database...	0.43	0.35	0.55	6	1070	6	0	5	1	11
PDB_00827	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	27028	0	0	0	0	81
PDB_00828	Purine links to Rfam database...	0.00	0.00	0.00	0	2485	0	0	0	0	27
PDB_00829	Purine links to Rfam database...	0.00	0.00	0.00	0	2278	0	0	0	0	24
PDB_00876	HIV_FE links to Rfam database...	0.00	0.00	0.00	0	990	0	0	0	0	20
PDB_00919	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	44253	0	0	0	0	103
PDB_01001	tRNA links to Rfam database...	0.00	0.00	0.00	0	2145	0	0	0	0	18
PDB_01020	Purine links to Rfam database...	0.00	0.00	0.00	0	2278	0	0	0	0	23
PDB_01050	UnaL2 links to Rfam database...	0.78	0.62	1.00	8	622	2	0	0	2	5
PDB_01051	Telomerase-cil links to Rfam database...	0.00	0.00	0.00	0	903	0	0	0	0	13
PDB_01073	SAM links to Rfam database...	0.00	0.00	0.00	0	4371	0	0	0	0	34
PDB_01092	glmS links to Rfam database...	0.00	0.00	0.00	0	10153	0	0	0	0	52
PDB_01114	TPP links to Rfam database...	0.00	0.00	0.00	0	2850	0	0	0	0	27
PDB_01152	HIV_FS2 links to Rfam database...	0.81	0.79	0.85	11	548	2	0	2	0	3
PDB_01236	ykoK links to Rfam database...	0.00	0.00	0.00	0	11628	0	0	0	0	54
RFA_00389	Hammerhead_3 links to Rfam database...	0.00	0.00	0.00	0	1431	0	0	0	0	15
RFA_00390	Hammerhead_3 links to Rfam database...	0.00	0.00	0.00	0	1431	0	0	0	0	15
RFA_00391	Hammerhead_3 links to Rfam database...	0.00	0.00	0.00	0	1431	0	0	0	0	15
RFA_00396	Hammerhead_3 links to Rfam database...	0.00	0.00	0.00	0	1431	0	0	0	0	15
RFA_00402	Hammerhead_3 links to Rfam database...	0.00	0.00	0.00	0	1431	0	0	0	0	15
RFA_00409	Hammerhead_3 links to Rfam database...	0.00	0.00	0.00	0	1431	0	0	0	0	15
RFA_00416	Hammerhead_3 links to Rfam database...	0.00	0.00	0.00	0	1485	0	0	0	0	15
RFA_00425	Hammerhead_3 links to Rfam database...	0.00	0.00	0.00	0	1653	0	0	0	0	15
RFA_00427	Hammerhead_3 links to Rfam database...	0.00	0.00	0.00	0	1485	0	0	0	0	15
RFA_00433	Hammerhead_3 links to Rfam database...	0.00	0.00	0.00	0	1431	0	0	0	0	15
RFA_00434	Hammerhead_3 links to Rfam database...	0.00	0.00	0.00	0	1431	0	0	0	0	15
RFA_00436	Hammerhead_3 links to Rfam database...	0.00	0.00	0.00	0	1431	0	0	0	0	15
RFA_00440	Hammerhead_3 links to Rfam database...	0.00	0.00	0.00	0	1485	0	0	0	0	15
RFA_00442	Hammerhead_3 links to Rfam database...	0.00	0.00	0.00	0	1431	0	0	0	0	15
RFA_00444	Hammerhead_3 links to Rfam database...	0.00	0.00	0.00	0	1540	0	0	0	0	15
RFA_00446	Hammerhead_3 links to Rfam database...	0.00	0.00	0.00	0	1485	0	0	0	0	15
RFA_00449	Hammerhead_3 links to Rfam database...	0.00	0.00	0.00	0	1485	0	0	0	0	15
RFA_00582	Y_RNA links to Rfam database...	0.00	0.00	0.00	0	5995	0	0	0	0	15
RFA_00583	Y_RNA links to Rfam database...	0.00	0.00	0.00	0	4950	0	0	0	0	15
RFA_00584	Y_RNA links to Rfam database...	0.00	0.00	0.00	0	2926	0	0	0	0	15
RFA_00585	Y_RNA links to Rfam database...	0.00	0.00	0.00	0	4851	0	0	0	0	15
RFA_00586	Y_RNA links to Rfam database...	0.00	0.00	0.00	0	3916	0	0	0	0	15
RFA_00587	Y_RNA links to Rfam database...	0.00	0.00	0.00	0	4851	0	0	0	0	15
RFA_00588	Y_RNA links to Rfam database...	0.00	0.00	0.00	0	4560	0	0	0	0	15
RFA_00589	Y_RNA links to Rfam database...	0.00	0.00	0.00	0	4371	0	0	0	0	15
RFA_00594	Y_RNA links to Rfam database...	0.00	0.00	0.00	0	2775	0	0	0	0	15
RFA_00596	Y_RNA links to Rfam database...	0.00	0.00	0.00	0	5995	0	0	0	0	15
RFA_00597	Telomerase-vert links to Rfam database...	0.00	0.00	0.00	0	97903	0	0	0	0	109
RFA_00598	Telomerase-vert links to Rfam database...	0.00	0.00	0.00	0	84666	0	0	0	0	101
RFA_00599	Telomerase-vert links to Rfam database...	0.00	0.00	0.00	0	101475	0	0	0	0	111
RFA_00600	Telomerase-vert links to Rfam database...	0.00	0.00	0.00	0	120295	0	0	0	0	100
RFA_00601	Telomerase-vert links to Rfam database...	0.00	0.00	0.00	0	99235	0	0	0	0	114
RFA_00602	Telomerase-vert links to Rfam database...	0.00	0.00	0.00	0	101475	0	0	0	0	116
RFA_00603	Telomerase-cil links to Rfam database...	0.00	0.00	0.00	0	13530	0	0	0	0	35
RFA_00604	Telomerase-cil links to Rfam database...	0.00	0.00	0.00	0	13530	0	0	0	0	35
RFA_00605	Telomerase-cil links to Rfam database...	0.00	0.00	0.00	0	15225	0	0	0	0	35
RFA_00606	Telomerase-cil links to Rfam database...	0.00	0.00	0.00	0	21321	0	0	0	0	39
RFA_00607	Telomerase-cil links to Rfam database...	0.00	0.00	0.00	0	17766	0	0	0	0	36
RFA_00609	Telomerase-cil links to Rfam database...	0.00	0.00	0.00	0	17955	0	0	0	0	37
RFA_00610	Telomerase-cil links to Rfam database...	0.00	0.00	0.00	0	17205	0	0	0	0	37
RFA_00611	Telomerase-cil links to Rfam database...	0.00	0.00	0.00	0	13041	0	0	0	0	35
RFA_00613	Telomerase-cil links to Rfam database...	0.00	0.00	0.00	0	12880	0	0	0	0	35
RFA_00615	Telomerase-cil links to Rfam database...	0.00	0.00	0.00	0	13366	0	0	0	0	35
RFA_00620	Telomerase-cil links to Rfam database...	0.00	0.00	0.00	0	21945	0	0	0	0	39
RFA_00621	RNase_MRP links to Rfam database...	0.00	0.00	0.00	0	46360	0	0	0	0	76
RFA_00623	RNase_MRP links to Rfam database...	0.00	0.00	0.00	0	43956	0	0	0	0	78
RFA_00624	RNase_MRP links to Rfam database...	0.00	0.00	0.00	0	30135	0	0	0	0	61
RFA_00626	rne5 links to Rfam database...	0.61	0.51	0.75	44	56557	22	2	13	7	43
RFA_00627	rne5 links to Rfam database...	0.84	0.75	0.94	65	56884	16	0	4	12	22
RFA_00628	rne5 links to Rfam database...	0.88	0.80	0.96	69	57219	11	0	3	8	17
RFA_00630	rne5 links to Rfam database...	0.80	0.70	0.91	61	56886	14	0	6	8	26
RFA_00632	HDV_ribozyme links to Rfam database...	0.00	0.00	0.00	0	4095	0	0	0	0	28
RFA_00636	HDV_ribozyme links to Rfam database...	0.00	0.00	0.00	0	4005	0	0	0	0	28
RFA_00639	7SK links to Rfam database...	0.00	0.00	0.00	0	54615	0	0	0	0	87
RFA_00642	Vimentin3 links to Rfam database...	0.58	0.33	1.00	6	2920	0	0	0	0	12
RFA_00643	Vimentin3 links to Rfam database...	0.29	0.17	0.50	3	2205	3	0	3	0	15
RFA_00644	Vimentin3 links to Rfam database...	0.62	0.39	1.00	7	2694	0	0	0	0	11
RFA_00645	Vimentin3 links to Rfam database...	0.58	0.33	1.00	6	2409	0	0	0	0	12
RFA_00649	Vimentin3 links to Rfam database...	0.67	0.44	1.00	8	2137	0	0	0	0	10
RFA_00651	Vimentin3 links to Rfam database...	0.67	0.44	1.00	8	2072	0	0	0	0	10
RFA_00653	Vimentin3 links to Rfam database...	0.00	0.00	0.00	0	2143	2	0	2	0	18
RFA_00654	Vimentin3 links to Rfam database...	0.62	0.39	1.00	7	2408	0	0	0	0	11
RFA_00658	Hammerhead_1 links to Rfam database...	0.56	0.43	0.75	6	1120	3	0	2	1	8
RFA_00659	Hammerhead_1 links to Rfam database...	0.50	0.36	0.71	5	1121	3	0	2	1	9
RFA_00664	Hammerhead_1 links to Rfam database...	0.27	0.07	1.00	1	989	0	0	0	0	13
RFA_00667	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	988	2	0	2	0	14
RFA_00668	Hammerhead_1 links to Rfam database...	0.50	0.36	0.71	5	983	3	0	2	1	9
RFA_00672	Hammerhead_1 links to Rfam database...	0.28	0.08	1.00	1	902	0	0	0	0	12
RFA_00673	Hammerhead_1 links to Rfam database...	0.46	0.21	1.00	3	1125	0	0	0	0	11
RFA_00674	Hammerhead_1 links to Rfam database...	0.53	0.29	1.00	4	1124	0	0	0	0	10
RFA_00675	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	989	1	0	1	0	14
RFA_00677	Hammerhead_1 links to Rfam database...	0.46	0.21	1.00	3	987	0	0	0	0	11
RFA_00678	Hammerhead_1 links to Rfam database...	0.43	0.29	0.67	4	940	2	0	2	0	10
RFA_00680	Hammerhead_1 links to Rfam database...	0.65	0.43	1.00	6	1122	0	0	0	0	8
RFA_00684	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	990	0	0	0	0	14
RFA_00685	Hammerhead_1 links to Rfam database...	0.56	0.43	0.75	6	982	3	0	2	1	8
RFA_00695	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	7017	4	2	2	0	14
RFA_00703	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	4270	8	3	5	0	14
RFA_00704	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	988	2	0	2	0	14
RFA_00705	Hammerhead_1 links to Rfam database...	0.27	0.07	1.00	1	1034	0	0	0	0	13
RFA_00706	Hammerhead_1 links to Rfam database...	0.30	0.14	0.67	2	1032	1	0	1	0	12
RFA_00707	Hammerhead_1 links to Rfam database...	0.50	0.36	0.71	5	1028	3	0	2	1	9
RFA_00708	Hammerhead_1 links to Rfam database...	0.40	0.21	0.75	3	1031	1	0	1	0	11
RFA_00709	Hammerhead_1 links to Rfam database...	0.65	0.43	1.00	6	984	0	0	0	0	8
RFA_00710	Hammerhead_1 links to Rfam database...	0.65	0.43	1.00	6	984	0	0	0	0	8
RFA_00711	Hammerhead_1 links to Rfam database...	0.27	0.07	1.00	1	1034	0	0	0	0	13
RFA_00715	Hammerhead_1 links to Rfam database...	0.35	0.21	0.60	3	941	2	0	2	0	11
RFA_00716	Hammerhead_1 links to Rfam database...	0.26	0.14	0.50	2	942	2	0	2	0	12
RFA_00717	Hammerhead_1 links to Rfam database...	0.62	0.50	0.78	7	894	2	0	2	0	7
RFA_00730	s2m links to Rfam database...	0.91	0.83	1.00	10	893	2	0	0	2	2
RFA_00731	s2m links to Rfam database...	0.91	0.83	1.00	10	893	2	0	0	2	2
RFA_00733	s2m links to Rfam database...	0.91	0.83	1.00	10	893	2	0	0	2	2
RFA_00734	s2m links to Rfam database...	0.91	0.83	1.00	10	893	2	0	0	2	2
RFA_00736	s2m links to Rfam database...	0.91	0.83	1.00	10	893	2	0	0	2	2
RFA_00737	s2m links to Rfam database...	0.91	0.83	1.00	10	893	2	0	0	2	2
RFA_00745	s2m links to Rfam database...	0.91	0.83	1.00	10	936	2	0	0	2	2
RFA_00749	s2m links to Rfam database...	0.91	0.83	1.00	10	893	2	0	0	2	2
RFA_00758	s2m links to Rfam database...	0.91	0.83	1.00	10	893	2	0	0	2	2
RFA_00762	s2m links to Rfam database...	0.91	0.83	1.00	10	893	2	0	0	2	2
RFA_00763	s2m links to Rfam database...	0.91	0.83	1.00	10	893	2	0	0	2	2
RFA_00764	s2m links to Rfam database...	0.91	0.83	1.00	10	893	2	0	0	2	2
RFA_00765	s2m links to Rfam database...	0.91	0.83	1.00	10	893	2	0	0	2	2
RFA_00767	Corona_pk3 links to Rfam database...	0.67	0.50	0.90	9	1881	1	0	1	0	9
RFA_00768	Corona_pk3 links to Rfam database...	0.74	0.56	1.00	10	1881	0	0	0	0	8
RFA_00769	Corona_pk3 links to Rfam database...	0.64	0.50	0.82	9	1942	2	1	1	0	9
RFA_00770	Corona_pk3 links to Rfam database...	0.68	0.56	0.83	10	2004	2	0	2	0	8
RFA_00773	Corona_pk3 links to Rfam database...	0.64	0.50	0.82	9	1942	2	1	1	0	9
RFA_00779	Corona_pk3 links to Rfam database...	0.65	0.56	0.77	10	1940	3	0	3	0	8
RFA_00781	Gammaretro_CES links to Rfam database...	0.92	0.94	0.91	30	5017	3	2	1	0	2
RFA_00786	Gammaretro_CES links to Rfam database...	0.73	0.75	0.71	24	5016	10	2	8	0	8
RFA_00791	Gammaretro_CES links to Rfam database...	0.64	0.66	0.64	21	5118	12	2	10	0	11
RFA_00792	Gammaretro_CES links to Rfam database...	0.92	0.94	0.91	30	5017	3	2	1	0	2
RFA_00801	Gammaretro_CES links to Rfam database...	0.40	0.41	0.39	13	5017	20	2	18	0	19
RFA_00805	RNAIII links to Rfam database...	0.00	0.00	0.00	0	133386	0	0	0	0	150
RFA_00808	RydC links to Rfam database...	-0.01	0.00	0.00	0	2001	17	2	13	2	16
RFA_00809	RydC links to Rfam database...	0.40	0.38	0.43	6	2131	8	1	7	0	10
RFA_00814	R2_retro_el links to Rfam database...	0.00	0.00	0.00	0	25200	0	0	0	0	41
RFA_00815	R2_retro_el links to Rfam database...	0.00	0.00	0.00	0	24531	0	0	0	0	41
RFA_00816	R2_retro_el links to Rfam database...	0.00	0.00	0.00	0	23220	0	0	0	0	41
RFA_00817	R2_retro_el links to Rfam database...	0.00	0.00	0.00	0	21945	0	0	0	0	41
RFA_00818	R2_retro_el links to Rfam database...	0.00	0.00	0.00	0	20301	0	0	0	0	41
RFA_00819	R2_retro_el links to Rfam database...	0.00	0.00	0.00	0	27966	0	0	0	0	41
RFA_00820	bicoid_3 links to Rfam database...	0.00	0.00	0.00	0	151525	0	0	0	0	160
RFA_00830	bicoid_3 links to Rfam database...	0.00	0.00	0.00	0	152628	0	0	0	0	154
SPR_00020	tRNA links to Rfam database...	0.00	0.00	0.00	0	2701	0	0	0	0	20
SPR_00023	tRNA links to Rfam database...	0.00	0.00	0.00	0	2850	0	0	0	0	21
SPR_00064	tRNA links to Rfam database...	0.00	0.00	0.00	0	2850	0	0	0	0	21
SPR_00111	tRNA links to Rfam database...	0.00	0.00	0.00	0	2701	0	0	0	0	21
SPR_00113	tRNA links to Rfam database...	0.00	0.00	0.00	0	2775	0	0	0	0	20
SPR_00137	tRNA links to Rfam database...	0.00	0.00	0.00	0	2926	0	0	0	0	21
SPR_00273	tRNA links to Rfam database...	0.00	0.00	0.00	0	2850	0	0	0	0	21
SPR_00277	tRNA links to Rfam database...	0.00	0.00	0.00	0	2926	0	0	0	0	21
SPR_00279	tRNA links to Rfam database...	0.00	0.00	0.00	0	2926	0	0	0	0	21
SPR_00314	tRNA links to Rfam database...	0.00	0.00	0.00	0	2926	0	0	0	0	21
SPR_00394	tRNA links to Rfam database...	0.00	0.00	0.00	0	3655	0	0	0	0	21
SPR_00402	tRNA links to Rfam database...	0.00	0.00	0.00	0	2556	0	0	0	0	21
SPR_00434	tRNA links to Rfam database...	0.00	0.00	0.00	0	2850	0	0	0	0	21
SPR_00452	tRNA links to Rfam database...	0.00	0.00	0.00	0	2850	0	0	0	0	21
SPR_00595	tRNA links to Rfam database...	0.00	0.00	0.00	0	2775	0	0	0	0	21
SPR_00721	tRNA links to Rfam database...	0.00	0.00	0.00	0	2926	0	0	0	0	21
SPR_00816	tRNA links to Rfam database...	0.00	0.00	0.00	0	3486	0	0	0	0	20
SPR_00867	tRNA links to Rfam database...	0.00	0.00	0.00	0	2926	0	0	0	0	21
SPR_00912	tRNA links to Rfam database...	0.00	0.00	0.00	0	3003	0	0	0	0	21
SPR_01157	tRNA links to Rfam database...	0.00	0.00	0.00	0	2775	0	0	0	0	21
SRP_00001	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	6786	0	0	0	0	40
SRP_00002	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	45150	0	0	0	0	102
SRP_00006	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	45753	0	0	0	0	101
SRP_00008	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	2926	0	0	0	0	25
SRP_00009	Plant_SRP links to Rfam database...	0.00	0.00	0.00	0	46665	0	0	0	0	102
SRP_00011	Plant_SRP links to Rfam database...	0.00	0.00	0.00	0	46360	0	0	0	0	104
SRP_00012	Plant_SRP links to Rfam database...	0.00	0.00	0.00	0	46360	0	0	0	0	101
SRP_00015	Plant_SRP links to Rfam database...	0.00	0.00	0.00	0	46360	0	0	0	0	99
SRP_00016	Archaea_SRP links to Rfam database...	0.00	0.00	0.00	0	47895	0	0	0	0	109
SRP_00018	Fungi_SRP links to Rfam database...	0.00	0.00	0.00	0	38503	0	0	0	0	81
SRP_00019	Fungi_SRP links to Rfam database...	0.00	0.00	0.00	0	36046	0	0	0	0	91
SRP_00020	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	5565	0	0	0	0	33
SRP_00024	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	37675	0	0	0	0	87
SRP_00026	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	36856	0	0	0	0	88
SRP_00027	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	37128	0	0	0	0	87
SRP_00030	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	36856	0	0	0	0	88
SRP_00031	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	36315	0	0	0	0	89
SRP_00037	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	36585	0	0	0	0	87
SRP_00038	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	5050	0	0	0	0	33
SRP_00040	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	5565	0	0	0	0	31
SRP_00042	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	4005	0	0	0	0	25
SRP_00043	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	5050	0	0	0	0	29
SRP_00044	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6105	0	0	0	0	32
SRP_00046	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	4753	0	0	0	0	32
SRP_00050	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	44850	0	0	0	0	99
SRP_00051	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	5460	0	0	0	0	30
SRP_00053	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	45150	0	0	0	0	94
SRP_00054	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	5565	0	0	0	0	32
SRP_00056	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6441	0	0	0	0	37
SRP_00057	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6328	0	0	0	0	35
SRP_00058	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	5778	0	0	0	0	34
SRP_00060	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	44551	0	0	0	0	100
SRP_00061	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	44850	0	0	0	0	100
SRP_00066	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	45451	0	0	0	0	100
SRP_00067	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	5778	0	0	0	0	38
SRP_00069	Fungi_SRP links to Rfam database...	0.00	0.00	0.00	0	34453	0	0	0	0	85
SRP_00070	Fungi_SRP links to Rfam database...	0.00	0.00	0.00	0	126756	0	0	0	0	121
SRP_00072	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6328	0	0	0	0	29
SRP_00073	Fungi_SRP links to Rfam database...	0.00	0.00	0.00	0	39060	0	0	0	0	71
SRP_00074	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6555	0	0	0	0	29
SRP_00075	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	5565	0	0	0	0	34
SRP_00077	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6670	0	0	0	0	37
SRP_00079	Plant_SRP links to Rfam database...	0.00	0.00	0.00	0	41905	0	0	0	0	88
SRP_00081	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	5565	0	0	0	0	31
SRP_00084	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	5460	0	0	0	0	34
SRP_00085	Plant_SRP links to Rfam database...	0.00	0.00	0.00	0	45451	0	0	0	0	101
SRP_00086	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	44253	0	0	0	0	100
SRP_00087	Fungi_SRP links to Rfam database...	0.00	0.00	0.00	0	37401	0	0	0	0	58
SRP_00088	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	34191	0	0	0	0	89
SRP_00089	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	35778	0	0	0	0	90
SRP_00090	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	35511	0	0	0	0	90
SRP_00091	Fungi_SRP links to Rfam database...	0.00	0.00	0.00	0	52975	0	0	0	0	95
SRP_00094	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	4095	0	0	0	0	24
SRP_00095	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	4005	0	0	0	0	25
SRP_00098	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6441	0	0	0	0	37
SRP_00099	Plant_SRP links to Rfam database...	0.00	0.00	0.00	0	44850	0	0	0	0	95
SRP_00102	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	44551	0	0	0	0	101
SRP_00103	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	45451	0	0	0	0	102
SRP_00104	Fungi_SRP links to Rfam database...	0.00	0.00	0.00	0	34453	0	0	0	0	69
SRP_00105	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	5565	0	0	0	0	34
SRP_00106	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	5253	0	0	0	0	25
SRP_00107	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	3655	0	0	0	0	19
SRP_00117	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	45451	0	0	0	0	102
SRP_00121	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	4278	0	0	0	0	25
SRP_00123	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	36585	0	0	0	0	91
SRP_00124	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	37128	0	0	0	0	85
SRP_00127	Fungi_SRP links to Rfam database...	0.00	0.00	0.00	0	72390	0	0	0	0	119
SRP_00128	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6786	0	0	0	0	36
SRP_00130	Archaea_SRP links to Rfam database...	0.00	0.00	0.00	0	49770	0	0	0	0	97
SRP_00132	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	4851	0	0	0	0	29
SRP_00134	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	5995	0	0	0	0	29
SRP_00136	Fungi_SRP links to Rfam database...	0.00	0.00	0.00	0	44253	0	0	0	0	71
SRP_00137	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	4186	0	0	0	0	25
SRP_00141	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6328	0	0	0	0	41
SRP_00142	Archaea_SRP links to Rfam database...	0.00	0.00	0.00	0	46056	0	0	0	0	93
SRP_00143	Archaea_SRP links to Rfam database...	0.00	0.00	0.00	0	49770	0	0	0	0	101
SRP_00144	Archaea_SRP links to Rfam database...	0.00	0.00	0.00	0	46665	0	0	0	0	94
SRP_00145	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6328	0	0	0	0	40
SRP_00146	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	5253	0	0	0	0	36
SRP_00148	Fungi_SRP links to Rfam database...	0.00	0.00	0.00	0	50086	0	0	0	0	87
SRP_00152	Plant_SRP links to Rfam database...	0.00	0.00	0.00	0	45753	0	0	0	0	103
SRP_00153	Plant_SRP links to Rfam database...	0.00	0.00	0.00	0	46971	0	0	0	0	107
SRP_00157	Fungi_SRP links to Rfam database...	0.00	0.00	0.00	0	44253	0	0	0	0	72
SRP_00158	Fungi_SRP links to Rfam database...	0.00	0.00	0.00	0	124251	0	0	0	0	115
SRP_00160	Fungi_SRP links to Rfam database...	0.00	0.00	0.00	0	86320	0	0	0	0	130
SRP_00161	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	2850	0	0	0	0	22
SRP_00162	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	2926	0	0	0	0	23
SRP_00163	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	3486	0	0	0	0	26
SRP_00164	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6903	0	0	0	0	35
SRP_00170	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	4095	0	0	0	0	25
SRP_00171	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	45451	0	0	0	0	88
SRP_00173	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	38226	0	0	0	0	90
SRP_00174	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	38781	0	0	0	0	86
SRP_00175	Fungi_SRP links to Rfam database...	0.00	0.00	0.00	0	44551	0	0	0	0	84
SRP_00178	Plant_SRP links to Rfam database...	0.00	0.00	0.00	0	45753	0	0	0	0	102
SRP_00179	Plant_SRP links to Rfam database...	0.00	0.00	0.00	0	46056	0	0	0	0	105
SRP_00181	Plant_SRP links to Rfam database...	0.00	0.00	0.00	0	46056	0	0	0	0	102
SRP_00182	Plant_SRP links to Rfam database...	0.00	0.00	0.00	0	46056	0	0	0	0	101
SRP_00184	Plant_SRP links to Rfam database...	0.00	0.00	0.00	0	46056	0	0	0	0	100
SRP_00188	Plant_SRP links to Rfam database...	0.00	0.00	0.00	0	31125	0	0	0	0	79
SRP_00194	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	3240	0	0	0	0	21
SRP_00197	Archaea_SRP links to Rfam database...	0.00	0.00	0.00	0	49455	0	0	0	0	101
SRP_00198	Archaea_SRP links to Rfam database...	0.00	0.00	0.00	0	51040	0	0	0	0	103
SRP_00199	Archaea_SRP links to Rfam database...	0.00	0.00	0.00	0	51040	0	0	0	0	105
SRP_00200	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6903	0	0	0	0	36
SRP_00201	Archaea_SRP links to Rfam database...	0.00	0.00	0.00	0	47895	0	0	0	0	111
SRP_00202	Archaea_SRP links to Rfam database...	0.00	0.00	0.00	0	54285	0	0	0	0	117
SRP_00203	Archaea_SRP links to Rfam database...	0.00	0.00	0.00	0	48828	0	0	0	0	105
SRP_00204	Archaea_SRP links to Rfam database...	0.00	0.00	0.00	0	49141	0	0	0	0	102
SRP_00206	Archaea_SRP links to Rfam database...	0.00	0.00	0.00	0	47895	0	0	0	0	108
SRP_00208	Archaea_SRP links to Rfam database...	0.00	0.00	0.00	0	46665	0	0	0	0	101
SRP_00209	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	4656	0	0	0	0	27
SRP_00213	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	4186	0	0	0	0	25
SRP_00215	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	3240	0	0	0	0	25
SRP_00216	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	3403	0	0	0	0	27
SRP_00217	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	3321	0	0	0	0	24
SRP_00219	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	3321	0	0	0	0	23
SRP_00222	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	3081	0	0	0	0	25
SRP_00227	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	5151	0	0	0	0	31
SRP_00228	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	45451	0	0	0	0	95
SRP_00229	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	5253	0	0	0	0	27
SRP_00230	Fungi_SRP links to Rfam database...	0.00	0.00	0.00	0	39621	0	0	0	0	90
SRP_00231	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	5460	0	0	0	0	34
SRP_00233	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	5151	0	0	0	0	33
SRP_00234	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	36315	0	0	0	0	86
SRP_00239	Plant_SRP links to Rfam database...	0.00	0.00	0.00	0	50403	0	0	0	0	93
SRP_00240	Plant_SRP links to Rfam database...	0.00	0.00	0.00	0	48205	0	0	0	0	102
SRP_00241	Plant_SRP links to Rfam database...	0.00	0.00	0.00	0	46056	0	0	0	0	82
SRP_00243	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	5151	0	0	0	0	31
SRP_00244	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6903	0	0	0	0	39
SRP_00247	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	47278	0	0	0	0	87
SRP_00250	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6786	0	0	0	0	36
SRP_00251	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	7021	0	0	0	0	36
SRP_00252	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	49141	0	0	0	0	89
SRP_00253	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	49455	0	0	0	0	90
SRP_00254	Fungi_SRP links to Rfam database...	0.00	0.00	0.00	0	32385	0	0	0	0	61
SRP_00255	Archaea_SRP links to Rfam database...	0.00	0.00	0.00	0	47586	0	0	0	0	94
SRP_00257	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	51040	0	0	0	0	108
SRP_00260	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	47895	0	0	0	0	100
SRP_00265	Fungi_SRP links to Rfam database...	0.00	0.00	0.00	0	41328	0	0	0	0	73
SRP_00266	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	4656	0	0	0	0	29
SRP_00267	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	44551	0	0	0	0	96
SRP_00268	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	4186	0	0	0	0	27
SRP_00269	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	5050	0	0	0	0	33
SRP_00270	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	4656	0	0	0	0	31
SRP_00271	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	3240	0	0	0	0	24
SRP_00273	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6786	0	0	0	0	40
SRP_00274	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6903	0	0	0	0	38
SRP_00276	Archaea_SRP links to Rfam database...	0.00	0.00	0.00	0	50721	0	0	0	0	110
SRP_00278	Archaea_SRP links to Rfam database...	0.00	0.00	0.00	0	46056	0	0	0	0	105
SRP_00282	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	43365	0	0	0	0	63
SRP_00285	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	3741	0	0	0	0	30
SRP_00286	Fungi_SRP links to Rfam database...	0.00	0.00	0.00	0	137026	0	0	0	0	174
SRP_00287	Fungi_SRP links to Rfam database...	0.00	0.00	0.00	0	141778	0	0	0	0	162
SRP_00290	Fungi_SRP links to Rfam database...	0.00	0.00	0.00	0	100576	0	0	0	0	135
SRP_00292	Fungi_SRP links to Rfam database...	0.00	0.00	0.00	0	137550	0	0	0	0	173
SRP_00294	Fungi_SRP links to Rfam database...	0.00	0.00	0.00	0	129286	0	0	0	0	167
SRP_00295	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6903	0	0	0	0	38
SRP_00299	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	44253	0	0	0	0	99
SRP_00300	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	44253	0	0	0	0	94
SRP_00301	Fungi_SRP links to Rfam database...	0.00	0.00	0.00	0	32640	0	0	0	0	86
SRP_00302	Fungi_SRP links to Rfam database...	0.00	0.00	0.00	0	41616	0	0	0	0	81
SRP_00303	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6670	0	0	0	0	32
SRP_00308	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	36315	0	0	0	0	88
SRP_00310	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	2926	0	0	0	0	23
SRP_00312	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	4186	0	0	0	0	27
SRP_00315	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	2926	0	0	0	0	23
SRP_00317	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	45150	0	0	0	0	98
SRP_00318	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	3003	0	0	0	0	23
SRP_00321	Archaea_SRP links to Rfam database...	0.00	0.00	0.00	0	47586	0	0	0	0	108
SRP_00322	Archaea_SRP links to Rfam database...	0.00	0.00	0.00	0	48516	0	0	0	0	109
SRP_00323	Archaea_SRP links to Rfam database...	0.00	0.00	0.00	0	47278	0	0	0	0	107
SRP_00324	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	5356	0	0	0	0	29
SRP_00325	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	4371	0	0	0	0	33
SRP_00326	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	5050	0	0	0	0	31
SRP_00328	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	39621	0	0	0	0	85
SRP_00329	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	39903	0	0	0	0	85
SRP_00330	Archaea_SRP links to Rfam database...	0.00	0.00	0.00	0	50086	0	0	0	0	95
SRP_00331	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	37675	0	0	0	0	87
SRP_00332	Archaea_SRP links to Rfam database...	0.00	0.00	0.00	0	50403	0	0	0	0	106
SRP_00333	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	5151	0	0	0	0	34
SRP_00335	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	35245	0	0	0	0	39
SRP_00337	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	35511	0	0	0	0	91
SRP_00338	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	5460	0	0	0	0	36
SRP_00339	Archaea_SRP links to Rfam database...	0.00	0.00	0.00	0	44551	0	0	0	0	94
SRP_00340	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	41328	0	0	0	0	82
SRP_00341	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	4753	0	0	0	0	31
SRP_00342	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	4005	0	0	0	0	25
SRP_00347	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	46665	0	0	0	0	96
SRP_00350	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	3916	0	0	0	0	27
SRP_00356	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	5050	0	0	0	0	30
SRP_00357	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	5356	0	0	0	0	36
SRP_00358	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6328	0	0	0	0	35
SRP_00361	Plant_SRP links to Rfam database...	0.00	0.00	0.00	0	41905	0	0	0	0	90
SRP_00363	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	4753	0	0	0	0	30
SRP_00365	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	3403	0	0	0	0	27
SRP_00367	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6786	0	0	0	0	35
SRP_00368	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	43956	0	0	0	0	98
SRP_00369	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	5778	0	0	0	0	35
SRP_00371	Fungi_SRP links to Rfam database...	0.00	0.00	0.00	0	36315	0	0	0	0	82
SRP_00382	Fungi_SRP links to Rfam database...	0.00	0.00	0.00	0	141778	0	0	0	0	170
SRP_00383	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	3240	0	0	0	0	24
TMR_00173	tmRNA links to Rfam database...	0.00	0.00	0.00	0	42195	0	0	0	0	42
TMR_00357	tmRNA links to Rfam database...	0.00	0.00	0.00	0	83028	0	0	0	0	92
TMR_00431	tmRNA links to Rfam database...	0.00	0.00	0.00	0	52003	0	0	0	0	55
TMR_00601	tmRNA links to Rfam database...	0.00	0.00	0.00	0	58996	0	0	0	0	42
TMR_00603	tmRNA links to Rfam database...	0.00	0.00	0.00	0	60378	0	0	0	0	43
TMR_00611	tmRNA links to Rfam database...	0.00	0.00	0.00	0	61425	0	0	0	0	102
TMR_00686	tmRNA links to Rfam database...	0.00	0.00	0.00	0	71253	0	0	0	0	108
TMR_00696	tmRNA links to Rfam database...	0.00	0.00	0.00	0	85078	0	0	0	0	114

^top

Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.

Table of contents:

Overview

Performance plots

Performance of RNAfold - scored higher in this pairwise comparison

1. Total counts & total scores for RNAfold

2. Individual counts for RNAfold [ download as .csv ]

Performance of Mastr(seed) - scored lower in this pairwise comparison

1. Total counts & total scores for Mastr(seed)

2. Individual counts for Mastr(seed) [ download as .csv ]