CompaRNA - on-line benchmarks of RNA structure prediction methods

Laboratory of Structural Bioinformatics @ Adam Mickiewicz University in Poznan

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Overview

Metric	RNAwolf		RSpredict(seed)
MCC	0.394	>	0.237
Average MCC ± 95% Confidence Intervals	0.422 ± 0.018	>	0.221 ± 0.022
Sensitivity	0.404	>	0.107
Positive Predictive Value	0.387	<	0.528
Total TP	19409	>	5115
Total TN	25943649	<	25984089
Total FP	36759	>	5166
Total FP CONTRA	4546	>	444
Total FP INCONS	26178	>	4134
Total FP COMP	6035	>	588
Total FN	28618	<	42912
P-value	3.56938820447e-08

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Performance plots

Comparison of performance of RNAwolf and RSpredict(seed). Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data (individual counts for RNAwolf and RSpredict(seed)).
Average Matthews Correlation Coefficients (MCC) with 95% confidence intervals (CIs) were plotted for different RNA families, for which at least 3 members were present in the benchmarking dataset. 'n' denotes the number of MCCs used to calculate the average and CI. See tables below for raw data (individual counts for RNAwolf and RSpredict(seed)).
Comparison of average Matthews Correlation Coefficients (MCCs) for RNAwolf and RSpredict(seed). The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data (individual counts for RNAwolf and RSpredict(seed)).

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Performance of RNAwolf - scored higher in this pairwise comparison

1. Total counts & total scores for RNAwolf

Total Base Pair Counts
Total TP	19409
Total TN	25943649
Total FP	36759
Total FP CONTRA	4546
Total FP INCONS	26178
Total FP COMP	6035
Total FN	28618

Total Scores
MCC	0.394
Average MCC ± 95% Confidence Intervals	0.422 ± 0.018
Sensitivity	0.404
Positive Predictive Value	0.387
Nr of predictions	645

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2. Individual counts for RNAwolf [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00001	RNaseP_arch links to Rfam database...	0.76	0.73	0.80	55	34122	33	1	13	19	20
ASE_00002	RNaseP_arch links to Rfam database...	0.56	0.53	0.58	39	35444	45	2	26	17	34
ASE_00004	RNaseP_bact_a links to Rfam database...	0.51	0.51	0.51	49	47799	61	8	39	14	48
ASE_00005	RNaseP_bact_a links to Rfam database...	0.46	0.46	0.47	54	57854	68	12	50	6	63
ASE_00006	RNaseP_bact_a links to Rfam database...	0.32	0.33	0.30	31	47484	83	10	61	12	62
ASE_00007	RNaseP_bact_a links to Rfam database...	0.30	0.30	0.31	33	59577	81	11	64	6	77
ASE_00009	RNaseP_arch links to Rfam database...	0.39	0.39	0.40	26	26041	48	4	35	9	41
ASE_00010	RNaseP_bact_b links to Rfam database...	0.34	0.38	0.32	31	49672	74	15	52	7	51
ASE_00012	RNaseP_bact_a links to Rfam database...	0.54	0.54	0.54	67	73797	68	5	51	12	56
ASE_00014	RNaseP_arch links to Rfam database...	0.36	0.38	0.35	40	54171	80	16	58	6	66
ASE_00017	RNaseP_nuc links to Rfam database...	0.11	0.13	0.10	8	50962	92	14	56	22	56
ASE_00018	RNaseP_bact_a links to Rfam database...	0.53	0.54	0.53	72	80465	72	4	60	8	62
ASE_00020	RNaseP_bact_a links to Rfam database...	0.63	0.62	0.64	78	73799	56	6	37	13	48
ASE_00021	RNaseP_bact_a links to Rfam database...	0.45	0.44	0.46	70	104045	94	7	74	13	90
ASE_00022	RNaseP_bact_b links to Rfam database...	0.45	0.45	0.44	56	82901	79	9	62	8	68
ASE_00023	RNaseP_bact_a links to Rfam database...	0.48	0.50	0.46	63	84117	87	12	63	12	64
ASE_00025	RNaseP_nuc links to Rfam database...	0.26	0.30	0.24	21	78517	111	23	45	43	50
ASE_00026	RNaseP_bact_a links to Rfam database...	0.41	0.42	0.41	46	59573	75	6	60	9	64
ASE_00028	RNaseP_bact_b links to Rfam database...	0.46	0.47	0.45	59	84536	90	9	62	19	67
ASE_00029	RNaseP_bact_a links to Rfam database...	0.27	0.29	0.26	35	82894	112	15	84	13	87
ASE_00030	RNaseP_bact_a links to Rfam database...	0.49	0.46	0.52	67	85361	72	6	57	9	78
ASE_00031	RNaseP_bact_a links to Rfam database...	0.46	0.46	0.46	58	86609	81	8	61	12	68
ASE_00032	RNaseP_bact_a links to Rfam database...	0.32	0.31	0.33	37	80087	93	2	74	17	81
ASE_00033	RNaseP_bact_a links to Rfam database...	0.11	0.12	0.11	14	64857	111	8	101	2	107
ASE_00035	RNaseP_bact_a links to Rfam database...	0.22	0.23	0.22	27	70375	102	22	76	4	91
ASE_00036	RNaseP_bact_a links to Rfam database...	0.42	0.42	0.43	55	75728	79	4	68	7	77
ASE_00037	RNaseP_bact_a links to Rfam database...	0.36	0.35	0.39	38	59242	67	8	52	7	72
ASE_00038	RNaseP_bact_a links to Rfam database...	0.41	0.41	0.41	41	53529	66	7	51	8	60
ASE_00040	RNaseP_bact_a links to Rfam database...	0.31	0.32	0.30	43	78860	110	16	84	10	90
ASE_00041	RNaseP_bact_a links to Rfam database...	0.37	0.36	0.39	39	57530	71	7	54	10	69
ASE_00042	RNaseP_bact_a links to Rfam database...	0.31	0.31	0.31	45	89957	109	9	89	11	100
ASE_00044	RNaseP_bact_a links to Rfam database...	0.48	0.48	0.48	50	54511	71	5	49	17	55
ASE_00045	RNaseP_bact_b links to Rfam database...	0.35	0.35	0.35	28	47197	69	6	47	16	52
ASE_00046	RNaseP_bact_a links to Rfam database...	0.21	0.21	0.22	22	50301	81	6	74	1	81
ASE_00047	RNaseP_bact_a links to Rfam database...	0.12	0.12	0.12	15	74178	121	5	107	9	115
ASE_00052	RNaseP_bact_a links to Rfam database...	0.17	0.17	0.17	19	61315	94	14	77	3	93
ASE_00053	RNaseP_bact_a links to Rfam database...	0.44	0.44	0.44	58	79269	85	12	62	11	75
ASE_00057	RNaseP_bact_a links to Rfam database...	0.53	0.53	0.54	71	82083	73	6	55	12	63
ASE_00064	RNaseP_bact_a links to Rfam database...	0.19	0.19	0.19	17	45361	82	13	60	9	72
ASE_00066	RNaseP_bact_a links to Rfam database...	0.50	0.51	0.49	66	72254	74	7	63	4	64
ASE_00068	RNaseP_bact_a links to Rfam database...	0.38	0.38	0.38	32	37591	57	8	44	5	53
ASE_00069	RNaseP_bact_a links to Rfam database...	0.57	0.56	0.58	78	82893	67	8	49	10	62
ASE_00074	RNaseP_bact_a links to Rfam database...	0.36	0.36	0.37	43	67779	81	9	65	7	76
ASE_00075	RNaseP_bact_a links to Rfam database...	0.59	0.57	0.60	93	108656	77	7	55	15	69
ASE_00076	RNaseP_bact_a links to Rfam database...	0.43	0.43	0.44	51	68148	77	10	56	11	67
ASE_00077	RNaseP_bact_a links to Rfam database...	0.36	0.37	0.35	32	45059	70	15	44	11	54
ASE_00078	RNaseP_bact_a links to Rfam database...	0.28	0.29	0.27	24	42983	71	8	56	7	59
ASE_00079	RNaseP_bact_a links to Rfam database...	0.47	0.47	0.48	47	55513	64	7	44	13	53
ASE_00080	RNaseP_bact_a links to Rfam database...	0.36	0.37	0.36	45	71507	88	5	74	9	78
ASE_00081	RNaseP_bact_a links to Rfam database...	0.21	0.22	0.21	21	49668	87	9	72	6	76
ASE_00082	RNaseP_bact_a links to Rfam database...	0.44	0.46	0.43	53	70377	86	8	62	16	63
ASE_00083	RNaseP_bact_a links to Rfam database...	0.29	0.29	0.28	32	62368	94	11	70	13	78
ASE_00084	RNaseP_bact_a links to Rfam database...	0.59	0.61	0.57	60	53523	55	7	38	10	39
ASE_00087	RNaseP_bact_a links to Rfam database...	0.29	0.28	0.31	41	88276	102	8	85	9	103
ASE_00090	RNaseP_bact_a links to Rfam database...	0.32	0.33	0.31	33	55504	91	4	70	17	68
ASE_00092	RNaseP_bact_a links to Rfam database...	0.51	0.52	0.50	59	63428	75	11	48	16	54
ASE_00096	RNaseP_bact_a links to Rfam database...	0.62	0.64	0.60	74	63422	58	13	37	8	41
ASE_00099	RNaseP_bact_a links to Rfam database...	0.56	0.55	0.56	66	64503	67	3	48	16	54
ASE_00100	RNaseP_nuc links to Rfam database...	0.22	0.24	0.20	18	82127	121	13	57	51	58
ASE_00102	RNaseP_bact_a links to Rfam database...	0.52	0.51	0.54	85	117697	89	7	66	16	81
ASE_00104	RNaseP_bact_a links to Rfam database...	0.40	0.39	0.41	46	64148	80	2	65	13	73
ASE_00105	RNaseP_bact_a links to Rfam database...	0.57	0.57	0.57	63	64151	57	10	37	10	48
ASE_00107	RNaseP_bact_a links to Rfam database...	0.51	0.53	0.50	67	73020	74	9	57	8	60
ASE_00108	RNaseP_nuc links to Rfam database...	0.19	0.22	0.16	14	46885	92	14	58	20	49
ASE_00111	RNaseP_nuc links to Rfam database...	0.20	0.25	0.17	14	50002	85	25	45	15	43
ASE_00112	RNaseP_bact_a links to Rfam database...	0.55	0.56	0.53	65	75344	66	4	53	9	51
ASE_00114	RNaseP_bact_b links to Rfam database...	0.32	0.35	0.30	27	45361	77	8	55	14	50
ASE_00115	RNaseP_bact_a links to Rfam database...	0.28	0.29	0.28	29	54512	85	6	68	11	72
ASE_00116	RNaseP_arch links to Rfam database...	0.05	0.06	0.05	4	31549	79	14	59	6	62
ASE_00118	RNaseP_bact_a links to Rfam database...	0.28	0.30	0.26	31	60607	93	9	79	5	71
ASE_00119	RNaseP_bact_a links to Rfam database...	0.52	0.53	0.50	57	62722	71	10	46	15	51
ASE_00120	RNaseP_arch links to Rfam database...	0.20	0.20	0.20	19	46877	79	15	60	4	75
ASE_00121	RNaseP_arch links to Rfam database...	0.15	0.15	0.14	14	45052	88	10	74	4	78
ASE_00122	RNaseP_bact_a links to Rfam database...	0.36	0.36	0.35	32	43274	62	12	47	3	56
ASE_00123	RNaseP_bact_a links to Rfam database...	0.46	0.48	0.45	41	38412	58	9	41	8	44
ASE_00125	RNaseP_bact_a links to Rfam database...	0.48	0.48	0.48	42	39252	53	12	34	7	46
ASE_00126	RNaseP_bact_a links to Rfam database...	0.43	0.44	0.42	36	40385	59	9	40	10	46
ASE_00128	RNaseP_bact_a links to Rfam database...	0.45	0.46	0.43	46	53195	70	6	54	10	54
ASE_00129	RNaseP_bact_a links to Rfam database...	0.34	0.35	0.33	39	62716	87	8	72	7	72
ASE_00131	RNaseP_bact_a links to Rfam database...	0.47	0.46	0.48	39	39258	54	10	33	11	46
ASE_00132	RNaseP_bact_a links to Rfam database...	0.42	0.43	0.42	41	50305	63	13	44	6	54
ASE_00134	RNaseP_bact_a links to Rfam database...	0.49	0.49	0.48	47	50305	59	8	43	8	48
ASE_00135	RNaseP_bact_a links to Rfam database...	0.45	0.46	0.45	50	63078	74	12	50	12	59
ASE_00136	RNaseP_bact_a links to Rfam database...	0.27	0.27	0.27	25	48112	84	4	64	16	67
ASE_00137	RNaseP_bact_a links to Rfam database...	0.47	0.49	0.45	48	48410	75	3	55	17	50
ASE_00138	RNaseP_bact_a links to Rfam database...	0.54	0.56	0.54	45	40386	55	6	33	16	36
ASE_00139	RNaseP_bact_a links to Rfam database...	0.56	0.55	0.57	57	54185	52	7	36	9	47
ASE_00140	RNaseP_bact_a links to Rfam database...	0.51	0.50	0.52	62	70757	67	7	50	10	63
ASE_00142	RNaseP_bact_a links to Rfam database...	0.28	0.28	0.27	34	67037	95	13	77	5	88
ASE_00145	RNaseP_arch links to Rfam database...	0.24	0.25	0.24	28	70006	101	8	83	10	83
ASE_00146	RNaseP_bact_a links to Rfam database...	0.42	0.43	0.42	53	70749	81	12	62	7	71
ASE_00148	RNaseP_arch links to Rfam database...	0.36	0.36	0.36	56	112419	106	14	86	6	98
ASE_00151	RNaseP_bact_a links to Rfam database...	0.62	0.61	0.63	60	51908	47	9	26	12	38
ASE_00153	RNaseP_nuc links to Rfam database...	0.33	0.38	0.29	28	57534	96	15	53	28	45
ASE_00154	RNaseP_arch links to Rfam database...	0.42	0.42	0.43	45	65236	73	8	52	13	62
ASE_00155	RNaseP_arch links to Rfam database...	0.41	0.42	0.41	59	93384	92	4	81	7	83
ASE_00161	RNaseP_bact_b links to Rfam database...	0.34	0.37	0.31	32	53525	82	7	64	11	55
ASE_00163	RNaseP_bact_a links to Rfam database...	0.40	0.40	0.40	37	53208	82	0	56	26	56
ASE_00165	RNaseP_bact_a links to Rfam database...	0.17	0.18	0.17	18	52870	93	10	77	6	83
ASE_00168	RNaseP_nuc links to Rfam database...	0.08	0.09	0.07	6	60637	105	22	61	22	58
ASE_00169	RNaseP_bact_a links to Rfam database...	0.51	0.50	0.51	54	57185	70	5	47	18	53
ASE_00170	RNaseP_bact_a links to Rfam database...	0.35	0.37	0.34	34	48728	76	9	57	10	59
ASE_00171	RNaseP_bact_a links to Rfam database...	0.57	0.60	0.55	56	48414	56	8	38	10	38
ASE_00172	RNaseP_bact_a links to Rfam database...	0.39	0.41	0.37	43	58880	80	9	64	7	63
ASE_00174	RNaseP_bact_a links to Rfam database...	0.48	0.50	0.47	55	60957	77	11	52	14	54
ASE_00175	RNaseP_bact_a links to Rfam database...	0.55	0.56	0.54	60	59919	62	10	42	10	47
ASE_00176	RNaseP_bact_a links to Rfam database...	0.41	0.43	0.41	47	59915	80	7	62	11	63
ASE_00179	RNaseP_bact_a links to Rfam database...	0.26	0.27	0.25	23	44162	79	13	55	11	61
ASE_00180	RNaseP_bact_a links to Rfam database...	0.43	0.43	0.43	43	51259	71	7	51	13	57
ASE_00181	RNaseP_bact_a links to Rfam database...	0.39	0.41	0.37	43	57514	78	9	64	5	63
ASE_00182	RNaseP_bact_a links to Rfam database...	0.43	0.43	0.44	58	84123	86	5	69	12	78
ASE_00184	RNaseP_bact_a links to Rfam database...	0.44	0.46	0.42	47	54504	69	11	53	5	55
ASE_00185	RNaseP_bact_a links to Rfam database...	0.49	0.49	0.49	63	73407	73	10	56	7	65
ASE_00186	RNaseP_bact_a links to Rfam database...	0.43	0.42	0.44	55	78877	87	9	62	16	77
ASE_00187	RNaseP_arch links to Rfam database...	0.28	0.29	0.28	33	68517	96	13	72	11	82
ASE_00189	RNaseP_bact_b links to Rfam database...	0.34	0.35	0.34	36	63083	78	14	57	7	66
ASE_00190	RNaseP_bact_b links to Rfam database...	0.56	0.54	0.57	49	45365	50	1	36	13	41
ASE_00191	RNaseP_arch links to Rfam database...	0.57	0.59	0.55	36	29581	43	5	24	14	25
ASE_00192	RNaseP_bact_b links to Rfam database...	0.51	0.51	0.51	68	84533	73	9	56	8	65
ASE_00194	RNaseP_bact_b links to Rfam database...	0.41	0.41	0.42	49	73419	79	4	64	11	70
ASE_00196	RNaseP_arch links to Rfam database...	0.57	0.59	0.55	44	31546	50	4	32	14	31
ASE_00197	RNaseP_bact_a links to Rfam database...	0.31	0.32	0.31	46	89104	114	10	93	11	99
ASE_00198	RNaseP_bact_a links to Rfam database...	0.28	0.27	0.28	28	52551	76	7	64	5	74
ASE_00203	RNaseP_bact_a links to Rfam database...	0.54	0.55	0.52	53	46564	58	10	38	10	43
ASE_00204	RNaseP_bact_b links to Rfam database...	0.51	0.53	0.49	59	67775	70	12	50	8	53
ASE_00205	RNaseP_arch links to Rfam database...	0.17	0.19	0.16	17	45949	90	17	73	0	73
ASE_00209	RNaseP_arch links to Rfam database...	0.30	0.30	0.31	26	42988	63	8	49	6	62
ASE_00210	RNaseP_arch links to Rfam database...	0.62	0.63	0.61	41	27194	39	9	17	13	24
ASE_00212	RNaseP_bact_a links to Rfam database...	0.29	0.29	0.28	43	93810	117	10	98	9	105
ASE_00213	RNaseP_arch links to Rfam database...	0.68	0.65	0.70	43	27200	31	6	12	13	23
ASE_00214	RNaseP_bact_a links to Rfam database...	0.44	0.46	0.43	47	56171	76	2	60	14	56
ASE_00215	RNaseP_bact_a links to Rfam database...	0.28	0.28	0.29	28	48418	83	6	64	13	71
ASE_00216	RNaseP_bact_a links to Rfam database...	0.25	0.26	0.25	21	39255	67	8	56	3	61
ASE_00217	RNaseP_bact_a links to Rfam database...	0.34	0.33	0.35	30	40385	63	5	50	8	60
ASE_00221	RNaseP_bact_a links to Rfam database...	0.36	0.37	0.35	43	64496	87	11	70	6	74
ASE_00222	RNaseP_arch links to Rfam database...	0.30	0.32	0.29	50	111929	125	20	102	3	107
ASE_00227	RNaseP_bact_a links to Rfam database...	0.21	0.20	0.21	27	78875	107	6	95	6	106
ASE_00228	RNaseP_bact_a links to Rfam database...	0.36	0.40	0.32	34	46866	76	20	51	5	52
ASE_00229	RNaseP_bact_a links to Rfam database...	0.09	0.10	0.09	9	42384	101	6	87	8	78
ASE_00231	RNaseP_bact_a links to Rfam database...	0.56	0.58	0.53	56	47790	61	8	41	12	40
ASE_00232	RNaseP_bact_a links to Rfam database...	0.37	0.39	0.36	33	38411	70	4	55	11	51
ASE_00234	RNaseP_bact_a links to Rfam database...	0.54	0.54	0.55	70	75338	70	8	50	12	59
ASE_00237	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	45662	110	30	61	19	56
ASE_00238	RNaseP_bact_a links to Rfam database...	0.56	0.57	0.56	65	64144	64	10	42	12	49
ASE_00240	RNaseP_bact_a links to Rfam database...	0.31	0.31	0.32	29	46573	73	9	54	10	64
ASE_00241	RNaseP_bact_a links to Rfam database...	0.62	0.64	0.59	56	43861	48	6	33	9	31
ASE_00242	RNaseP_bact_a links to Rfam database...	0.42	0.41	0.44	46	60970	62	14	45	3	66
ASE_00245	RNaseP_nuc links to Rfam database...	0.38	0.37	0.38	29	55202	82	1	46	35	49
ASE_00246	RNaseP_nuc links to Rfam database...	0.07	0.07	0.06	5	48121	94	25	54	15	62
ASE_00247	RNaseP_nuc links to Rfam database...	0.10	0.13	0.08	8	54188	105	25	64	16	56
ASE_00248	RNaseP_bact_a links to Rfam database...	0.32	0.31	0.33	35	62376	75	7	63	5	79
ASE_00250	RNaseP_bact_a links to Rfam database...	0.37	0.36	0.38	47	78880	83	10	66	7	84
ASE_00251	RNaseP_nuc links to Rfam database...	0.78	0.79	0.77	34	17722	33	0	10	23	9
ASE_00252	RNaseP_bact_a links to Rfam database...	0.30	0.30	0.31	50	115281	120	9	100	11	118
ASE_00254	RNaseP_bact_a links to Rfam database...	0.36	0.39	0.34	32	36761	69	10	53	6	50
ASE_00255	RNaseP_bact_a links to Rfam database...	0.46	0.47	0.45	61	74555	83	9	66	8	69
ASE_00257	RNaseP_bact_a links to Rfam database...	0.56	0.57	0.56	55	50941	56	9	35	12	42
ASE_00258	RNaseP_nuc links to Rfam database...	0.26	0.28	0.24	15	26733	56	10	38	8	39
ASE_00259	RNaseP_bact_a links to Rfam database...	0.35	0.35	0.36	42	73037	85	9	65	11	79
ASE_00263	RNaseP_bact_a links to Rfam database...	0.15	0.16	0.15	19	70373	111	9	99	3	101
ASE_00264	RNaseP_nuc links to Rfam database...	0.43	0.44	0.43	44	49038	69	6	53	10	56
ASE_00267	RNaseP_bact_a links to Rfam database...	0.36	0.35	0.37	31	45067	62	8	44	10	57
ASE_00270	RNaseP_bact_a links to Rfam database...	0.51	0.50	0.52	64	72268	71	4	54	13	64
ASE_00274	RNaseP_bact_a links to Rfam database...	0.30	0.29	0.30	30	55512	78	13	56	9	73
ASE_00277	RNaseP_bact_a links to Rfam database...	0.28	0.30	0.26	27	48103	84	14	61	9	64
ASE_00279	RNaseP_bact_a links to Rfam database...	0.29	0.29	0.29	29	53202	80	4	66	10	72
ASE_00280	RNaseP_bact_a links to Rfam database...	0.20	0.20	0.20	20	51905	85	5	73	7	78
ASE_00281	RNaseP_bact_a links to Rfam database...	0.33	0.34	0.32	30	44458	73	11	52	10	58
ASE_00282	RNaseP_bact_a links to Rfam database...	0.23	0.24	0.24	30	77688	105	10	87	8	97
ASE_00283	RNaseP_bact_a links to Rfam database...	0.46	0.48	0.45	51	61662	74	12	51	11	56
ASE_00284	RNaseP_bact_a links to Rfam database...	0.08	0.08	0.08	9	58197	111	9	96	6	99
ASE_00285	RNaseP_bact_a links to Rfam database...	0.27	0.28	0.27	34	68878	102	9	85	8	88
ASE_00286	RNaseP_bact_a links to Rfam database...	0.57	0.54	0.61	50	46583	42	6	26	10	42
ASE_00287	RNaseP_bact_a links to Rfam database...	0.30	0.30	0.30	31	54842	81	6	67	8	72
ASE_00288	RNaseP_bact_a links to Rfam database...	0.27	0.27	0.28	25	45967	68	12	52	4	68
ASE_00289	RNaseP_bact_a links to Rfam database...	0.67	0.66	0.68	104	100873	60	6	42	12	53
ASE_00292	RNaseP_bact_a links to Rfam database...	0.38	0.38	0.39	52	81676	93	8	74	11	86
ASE_00294	RNaseP_bact_a links to Rfam database...	0.38	0.37	0.38	63	114317	107	9	92	6	108
ASE_00295	RNaseP_bact_a links to Rfam database...	0.49	0.49	0.50	64	73792	73	10	54	9	67
ASE_00296	RNaseP_bact_a links to Rfam database...	0.31	0.30	0.32	44	91669	101	7	86	8	101
ASE_00297	RNaseP_bact_a links to Rfam database...	0.41	0.42	0.40	41	52873	73	4	57	12	57
ASE_00298	RNaseP_bact_a links to Rfam database...	0.29	0.29	0.30	33	67418	86	8	69	9	80
ASE_00299	RNaseP_bact_a links to Rfam database...	0.45	0.47	0.43	47	49346	69	6	56	7	53
ASE_00303	RNaseP_nuc links to Rfam database...	0.46	0.47	0.44	45	67794	83	8	49	26	50
ASE_00305	RNaseP_bact_b links to Rfam database...	0.15	0.18	0.14	15	54504	107	20	76	11	70
ASE_00313	RNaseP_nuc links to Rfam database...	0.11	0.11	0.11	10	62387	106	11	73	22	79
ASE_00316	RNaseP_nuc links to Rfam database...	0.30	0.34	0.27	33	107758	124	18	71	35	65
ASE_00318	RNaseP_bact_b links to Rfam database...	0.41	0.42	0.40	49	80077	79	13	61	5	69
ASE_00321	RNaseP_bact_b links to Rfam database...	0.27	0.28	0.26	25	54520	80	13	57	10	63
ASE_00327	RNaseP_nuc links to Rfam database...	0.44	0.48	0.40	43	57184	75	21	43	11	46
ASE_00328	RNaseP_bact_b links to Rfam database...	0.51	0.49	0.53	55	72667	61	5	44	12	57
ASE_00329	RNaseP_nuc links to Rfam database...	0.53	0.54	0.52	34	40689	58	6	26	26	29
ASE_00330	RNaseP_nuc links to Rfam database...	0.40	0.42	0.38	38	56181	78	12	49	17	52
ASE_00332	RNaseP_bact_a links to Rfam database...	0.23	0.23	0.24	32	81674	118	5	99	14	106
ASE_00335	RNaseP_bact_b links to Rfam database...	0.58	0.57	0.58	66	75353	65	5	42	18	50
ASE_00337	RNaseP_nuc links to Rfam database...	0.45	0.44	0.47	31	39274	59	1	34	24	40
ASE_00338	RNaseP_nuc links to Rfam database...	0.35	0.37	0.34	36	66323	87	14	57	16	62
ASE_00339	RNaseP_bact_a links to Rfam database...	0.51	0.52	0.50	62	80077	77	3	58	16	57
ASE_00340	RNaseP_bact_a links to Rfam database...	0.14	0.15	0.14	13	45963	87	8	72	7	72
ASE_00342	RNaseP_bact_a links to Rfam database...	0.50	0.50	0.50	58	62365	70	9	49	12	57
ASE_00343	RNaseP_bact_a links to Rfam database...	0.51	0.50	0.53	56	83331	75	2	47	26	57
ASE_00346	RNaseP_arch links to Rfam database...	0.26	0.26	0.27	25	48112	83	9	59	15	72
ASE_00353	RNaseP_bact_a links to Rfam database...	0.19	0.21	0.19	22	57852	106	9	87	10	85
ASE_00359	RNaseP_arch links to Rfam database...	0.16	0.18	0.15	14	42682	87	15	67	5	66
ASE_00360	RNaseP_arch links to Rfam database...	0.25	0.28	0.23	18	29326	62	10	49	3	47
ASE_00361	RNaseP_bact_a links to Rfam database...	0.36	0.37	0.35	47	75333	94	11	75	8	80
ASE_00362	RNaseP_bact_a links to Rfam database...	0.43	0.44	0.42	40	48110	66	10	45	11	51
ASE_00363	RNaseP_bact_a links to Rfam database...	0.29	0.31	0.27	29	51254	81	12	65	4	65
ASE_00364	RNaseP_bact_a links to Rfam database...	0.38	0.39	0.38	41	54177	77	9	58	10	64
ASE_00366	RNaseP_bact_a links to Rfam database...	0.19	0.20	0.17	20	58538	98	14	81	3	78
ASE_00367	RNaseP_bact_a links to Rfam database...	0.26	0.27	0.25	23	42978	79	8	62	9	63
ASE_00369	RNaseP_bact_a links to Rfam database...	0.34	0.36	0.33	38	55831	88	3	73	12	69
ASE_00370	RNaseP_bact_a links to Rfam database...	0.29	0.30	0.28	25	41816	75	7	57	11	59
ASE_00372	RNaseP_bact_a links to Rfam database...	0.21	0.22	0.21	22	51897	88	11	73	4	78
ASE_00374	RNaseP_bact_a links to Rfam database...	0.48	0.48	0.48	42	44763	54	2	43	9	46
ASE_00375	RNaseP_bact_a links to Rfam database...	0.34	0.32	0.37	35	60284	67	9	50	8	75
ASE_00376	RNaseP_bact_a links to Rfam database...	0.45	0.46	0.44	48	56843	71	4	58	9	57
ASE_00377	RNaseP_bact_a links to Rfam database...	0.65	0.65	0.64	70	57521	52	8	31	13	37
ASE_00379	RNaseP_bact_a links to Rfam database...	0.25	0.26	0.25	23	45964	77	10	59	8	66
ASE_00380	RNaseP_bact_a links to Rfam database...	0.28	0.28	0.29	28	54848	82	7	63	12	71
ASE_00382	RNaseP_bact_a links to Rfam database...	0.36	0.37	0.35	31	41816	69	12	46	11	53
ASE_00383	RNaseP_bact_a links to Rfam database...	0.44	0.43	0.45	45	54514	70	4	52	14	60
ASE_00384	RNaseP_bact_a links to Rfam database...	0.27	0.28	0.27	26	48418	84	10	62	12	66
ASE_00385	RNaseP_bact_a links to Rfam database...	0.52	0.52	0.53	42	41825	54	7	31	16	39
ASE_00386	RNaseP_bact_a links to Rfam database...	0.39	0.40	0.38	38	50303	74	6	56	12	58
ASE_00387	RNaseP_bact_a links to Rfam database...	0.47	0.47	0.47	49	55841	66	8	47	11	55
ASE_00388	RNaseP_bact_a links to Rfam database...	0.29	0.30	0.28	27	45657	84	7	62	15	62
ASE_00390	RNaseP_bact_a links to Rfam database...	0.38	0.40	0.36	34	42100	71	9	52	10	51
ASE_00393	RNaseP_bact_a links to Rfam database...	0.27	0.28	0.27	26	47798	77	6	65	6	67
ASE_00394	RNaseP_bact_a links to Rfam database...	0.29	0.29	0.30	27	46881	73	6	57	10	66
ASE_00395	RNaseP_bact_a links to Rfam database...	0.54	0.56	0.52	47	41526	54	12	31	11	37
ASE_00396	RNaseP_bact_a links to Rfam database...	0.28	0.30	0.27	25	41522	78	11	58	9	58
ASE_00397	RNaseP_bact_a links to Rfam database...	0.43	0.43	0.42	45	54509	75	7	54	14	60
ASE_00398	RNaseP_bact_a links to Rfam database...	0.35	0.36	0.35	37	55839	79	6	63	10	67
ASE_00400	RNaseP_bact_a links to Rfam database...	0.63	0.64	0.62	68	57860	54	9	33	12	38
ASE_00401	RNaseP_bact_a links to Rfam database...	0.39	0.40	0.38	51	76893	91	12	72	7	75
ASE_00402	RNaseP_bact_a links to Rfam database...	0.44	0.45	0.44	38	42400	59	7	41	11	47
ASE_00403	RNaseP_bact_a links to Rfam database...	0.24	0.23	0.24	25	55841	94	8	71	15	82
ASE_00404	RNaseP_bact_a links to Rfam database...	0.25	0.28	0.23	24	42967	83	16	64	3	61
ASE_00406	RNaseP_bact_a links to Rfam database...	0.33	0.32	0.34	30	48740	71	5	53	13	64
ASE_00411	RNaseP_bact_a links to Rfam database...	0.39	0.40	0.39	36	49362	70	10	47	13	53
ASE_00412	RNaseP_bact_a links to Rfam database...	0.25	0.25	0.25	26	58206	86	11	68	7	79
ASE_00413	RNaseP_bact_a links to Rfam database...	0.60	0.62	0.59	50	44466	49	10	25	14	31
ASE_00414	RNaseP_bact_a links to Rfam database...	0.34	0.34	0.34	32	46267	75	6	55	14	63
ASE_00415	RNaseP_bact_a links to Rfam database...	0.47	0.48	0.46	49	54839	67	5	53	9	54
ASE_00416	RNaseP_bact_a links to Rfam database...	0.32	0.32	0.32	41	77291	98	8	81	9	86
ASE_00417	RNaseP_arch links to Rfam database...	0.42	0.44	0.40	44	54506	75	9	56	10	56
ASE_00418	RNaseP_arch links to Rfam database...	0.17	0.19	0.16	14	38696	80	6	65	9	61
ASE_00419	RNaseP_bact_a links to Rfam database...	0.51	0.52	0.49	54	54836	66	9	47	10	49
ASE_00420	RNaseP_nuc links to Rfam database...	0.56	0.57	0.55	36	43300	55	9	20	26	27
ASE_00422	RNaseP_bact_a links to Rfam database...	0.24	0.24	0.24	23	46875	85	1	72	12	71
ASE_00423	RNaseP_bact_a links to Rfam database...	0.36	0.38	0.34	41	56833	84	9	70	5	68
ASE_00426	RNaseP_bact_a links to Rfam database...	0.31	0.33	0.29	36	60951	91	10	78	3	72
ASE_00427	RNaseP_nuc links to Rfam database...	0.08	0.11	0.06	5	40673	91	35	42	14	41
ASE_00428	RNaseP_bact_a links to Rfam database...	0.29	0.30	0.29	37	76507	103	11	81	11	88
ASE_00430	RNaseP_bact_a links to Rfam database...	0.52	0.53	0.52	51	46873	56	1	46	9	46
ASE_00431	RNaseP_bact_a links to Rfam database...	0.54	0.54	0.54	51	46266	57	7	36	14	44
ASE_00434	RNaseP_bact_b links to Rfam database...	0.63	0.64	0.63	70	68154	63	4	37	22	40
ASE_00437	RNaseP_bact_a links to Rfam database...	0.30	0.30	0.31	41	79268	98	3	89	6	94
ASE_00438	RNaseP_bact_a links to Rfam database...	0.32	0.34	0.30	39	65935	97	16	76	5	77
ASE_00441	RNaseP_bact_a links to Rfam database...	0.45	0.46	0.45	51	64147	73	3	60	10	61
ASE_00443	RNaseP_nuc links to Rfam database...	0.96	0.96	0.96	48	26746	38	0	2	36	2
ASE_00447	RNaseP_bact_a links to Rfam database...	0.61	0.59	0.62	69	60267	47	9	33	5	47
ASE_00448	RNaseP_bact_a links to Rfam database...	0.45	0.43	0.48	48	64161	65	8	44	13	64
ASE_00451	RNaseP_bact_a links to Rfam database...	0.48	0.49	0.47	61	70746	77	7	62	8	64
ASE_00454	RNaseP_nuc links to Rfam database...	0.15	0.17	0.14	11	43286	82	19	49	14	52
CRW_00013	Intron_gpI links to Rfam database...	0.03	0.03	0.03	4	103598	147	24	114	9	111
CRW_00016	Intron_gpI links to Rfam database...	0.24	0.23	0.24	28	77305	101	10	78	13	92
CRW_00610	Intron_gpI links to Rfam database...	0.52	0.52	0.52	42	36234	53	4	35	14	39
CRW_00613	Intron_gpI links to Rfam database...	0.60	0.62	0.59	48	34898	50	1	33	16	30
CRW_00614	Intron_gpI links to Rfam database...	0.09	0.12	0.07	7	121673	167	34	57	76	50
CRW_00618	Intron_gpI links to Rfam database...	0.01	0.02	0.01	1	56208	107	13	58	36	60
CRW_00619	Intron_gpI links to Rfam database...	0.27	0.32	0.24	23	164928	154	28	46	80	50
CRW_00620	Intron_gpI links to Rfam database...	0.31	0.33	0.28	21	150901	165	8	45	112	42
CRW_00621	Intron_gpI links to Rfam database...	0.26	0.30	0.23	21	153090	163	20	50	93	50
CRW_00623	Intron_gpI links to Rfam database...	0.11	0.13	0.10	11	129683	155	28	73	54	72
CRW_00633	Intron_gpI links to Rfam database...	0.29	0.29	0.30	31	63442	76	12	61	3	75
CRW_00634	Intron_gpI links to Rfam database...	0.19	0.22	0.17	21	64493	110	25	81	4	73
CRW_00670	Intron_gpI links to Rfam database...	0.35	0.35	0.35	42	70006	81	12	65	4	78
CRW_00671	Intron_gpI links to Rfam database...	0.13	0.13	0.13	15	62723	100	11	86	3	102
CRW_00672	Intron_gpI links to Rfam database...	0.06	0.06	0.06	7	72276	114	17	90	7	104
CRW_00674	Intron_gpI links to Rfam database...	0.28	0.28	0.28	35	83310	106	12	79	15	89
CRW_00676	Intron_gpI links to Rfam database...	0.16	0.17	0.16	19	93407	113	22	80	11	96
CRW_00692	Intron_gpI links to Rfam database...	0.18	0.19	0.18	17	68539	100	16	63	21	73
PDB_00005	Tymo_tRNA-like links to Rfam database...	0.42	0.36	0.50	5	936	6	0	5	1	9
PDB_00012	mir-TAR links to Rfam database...	0.92	0.86	1.00	6	400	2	0	0	2	1
PDB_00213	Gammaretro_CES links to Rfam database...	0.84	0.83	0.85	34	5010	7	0	6	1	7
PDB_00553	mir-TAR links to Rfam database...	0.90	0.82	1.00	9	456	0	0	0	0	2
PDB_00716	HDV_ribozyme links to Rfam database...	0.68	0.57	0.81	13	2685	3	0	3	0	10
PDB_00741	Entero_5_CRE links to Rfam database...	0.97	0.94	1.00	16	687	0	0	0	0	1
PDB_00810	s2m links to Rfam database...	0.55	0.47	0.67	8	1069	4	0	4	0	9
PDB_00827	Intron_gpI links to Rfam database...	0.58	0.58	0.57	47	26946	37	6	29	2	34
PDB_00828	Purine links to Rfam database...	0.85	0.81	0.88	22	2460	3	1	2	0	5
PDB_00829	Purine links to Rfam database...	0.78	0.75	0.82	18	2256	4	1	3	0	6
PDB_00876	HIV_FE links to Rfam database...	0.92	0.85	1.00	17	973	0	0	0	0	3
PDB_00919	RNaseP_bact_a links to Rfam database...	0.48	0.46	0.51	47	44161	51	5	40	6	56
PDB_01001	tRNA links to Rfam database...	0.70	0.78	0.64	14	2123	10	1	7	2	4
PDB_01020	Purine links to Rfam database...	0.84	0.83	0.86	19	2256	5	1	2	2	4
PDB_01050	UnaL2 links to Rfam database...	0.80	0.77	0.83	10	618	2	0	2	0	3
PDB_01051	Telomerase-cil links to Rfam database...	1.00	1.00	1.00	13	890	5	0	0	5	0
PDB_01073	SAM links to Rfam database...	0.17	0.18	0.17	6	4336	29	3	26	0	28
PDB_01092	glmS links to Rfam database...	0.43	0.38	0.49	20	10112	23	2	19	2	32
PDB_01114	TPP links to Rfam database...	0.74	0.67	0.82	18	2828	7	0	4	3	9
PDB_01152	HIV_FS2 links to Rfam database...	0.92	0.86	1.00	12	549	1	0	0	1	2
PDB_01236	ykoK links to Rfam database...	0.43	0.41	0.47	22	11581	27	1	24	2	32
RFA_00389	Hammerhead_3 links to Rfam database...	0.69	0.67	0.71	10	1417	7	1	3	3	5
RFA_00390	Hammerhead_3 links to Rfam database...	0.74	0.67	0.83	10	1419	5	0	2	3	5
RFA_00391	Hammerhead_3 links to Rfam database...	0.70	0.60	0.82	9	1420	4	1	1	2	6
RFA_00396	Hammerhead_3 links to Rfam database...	0.93	0.93	0.93	14	1416	4	0	1	3	1
RFA_00402	Hammerhead_3 links to Rfam database...	0.74	0.67	0.83	10	1419	4	0	2	2	5
RFA_00409	Hammerhead_3 links to Rfam database...	0.80	0.80	0.80	12	1416	9	0	3	6	3
RFA_00416	Hammerhead_3 links to Rfam database...	0.80	0.80	0.80	12	1470	8	0	3	5	3
RFA_00425	Hammerhead_3 links to Rfam database...	0.45	0.47	0.44	7	1637	14	0	9	5	8
RFA_00427	Hammerhead_3 links to Rfam database...	0.62	0.60	0.64	9	1471	9	1	4	4	6
RFA_00433	Hammerhead_3 links to Rfam database...	0.71	0.67	0.77	10	1418	7	2	1	4	5
RFA_00434	Hammerhead_3 links to Rfam database...	0.80	0.80	0.80	12	1416	8	0	3	5	3
RFA_00436	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	3	0	0	3	0
RFA_00440	Hammerhead_3 links to Rfam database...	0.69	0.67	0.71	10	1471	8	1	3	4	5
RFA_00442	Hammerhead_3 links to Rfam database...	0.87	0.87	0.87	13	1416	6	0	2	4	2
RFA_00444	Hammerhead_3 links to Rfam database...	0.24	0.27	0.24	4	1523	16	0	13	3	11
RFA_00446	Hammerhead_3 links to Rfam database...	0.93	0.93	0.93	14	1470	4	0	1	3	1
RFA_00449	Hammerhead_3 links to Rfam database...	0.27	0.27	0.29	4	1471	12	1	9	2	11
RFA_00582	Y_RNA links to Rfam database...	0.97	0.93	1.00	14	5981	18	0	0	18	1
RFA_00583	Y_RNA links to Rfam database...	0.93	0.93	0.93	14	4935	21	0	1	20	1
RFA_00584	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	2911	13	0	0	13	0
RFA_00585	Y_RNA links to Rfam database...	0.90	0.87	0.93	13	4837	20	0	1	19	2
RFA_00586	Y_RNA links to Rfam database...	0.00	0.00	0.00	0	3899	22	5	12	5	15
RFA_00587	Y_RNA links to Rfam database...	0.93	0.87	1.00	13	4838	16	0	0	16	2
RFA_00588	Y_RNA links to Rfam database...	0.97	0.93	1.00	14	4546	16	0	0	16	1
RFA_00589	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4356	16	0	0	16	0
RFA_00594	Y_RNA links to Rfam database...	0.90	0.87	0.93	13	2761	6	0	1	5	2
RFA_00596	Y_RNA links to Rfam database...	0.00	0.00	0.00	0	5972	34	5	18	11	15
RFA_00597	Telomerase-vert links to Rfam database...	0.41	0.44	0.39	48	97780	99	18	57	24	61
RFA_00598	Telomerase-vert links to Rfam database...	0.18	0.20	0.17	20	84546	111	30	70	11	81
RFA_00599	Telomerase-vert links to Rfam database...	0.31	0.34	0.28	38	101339	111	33	65	13	73
RFA_00600	Telomerase-vert links to Rfam database...	0.06	0.08	0.05	8	120145	162	45	97	20	92
RFA_00601	Telomerase-vert links to Rfam database...	0.37	0.42	0.33	48	99088	112	28	71	13	66
RFA_00602	Telomerase-vert links to Rfam database...	0.32	0.35	0.30	41	101337	128	16	81	31	75
RFA_00603	Telomerase-cil links to Rfam database...	0.55	0.60	0.50	21	13488	33	5	16	12	14
RFA_00604	Telomerase-cil links to Rfam database...	0.73	0.77	0.69	27	13491	29	5	7	17	8
RFA_00605	Telomerase-cil links to Rfam database...	0.15	0.17	0.14	6	15181	46	6	32	8	29
RFA_00606	Telomerase-cil links to Rfam database...	0.39	0.41	0.36	16	21277	43	8	20	15	23
RFA_00607	Telomerase-cil links to Rfam database...	0.44	0.44	0.44	16	17730	39	1	19	19	20
RFA_00609	Telomerase-cil links to Rfam database...	0.59	0.62	0.56	23	17914	37	1	17	19	14
RFA_00610	Telomerase-cil links to Rfam database...	0.09	0.11	0.08	4	17154	53	17	30	6	33
RFA_00611	Telomerase-cil links to Rfam database...	0.65	0.69	0.62	24	13002	29	3	12	14	11
RFA_00613	Telomerase-cil links to Rfam database...	0.16	0.17	0.15	6	12839	41	8	27	6	29
RFA_00615	Telomerase-cil links to Rfam database...	0.10	0.11	0.09	4	13321	42	10	31	1	31
RFA_00620	Telomerase-cil links to Rfam database...	0.21	0.23	0.19	9	21898	49	10	28	11	30
RFA_00621	RNase_MRP links to Rfam database...	0.30	0.32	0.29	24	46276	83	13	47	23	52
RFA_00623	RNase_MRP links to Rfam database...	0.48	0.47	0.48	37	43879	60	5	35	20	41
RFA_00624	RNase_MRP links to Rfam database...	0.19	0.21	0.18	13	30062	67	18	42	7	48
RFA_00626	rne5 links to Rfam database...	0.08	0.09	0.08	8	56511	99	24	73	2	79
RFA_00627	rne5 links to Rfam database...	0.38	0.39	0.37	34	56862	73	13	44	16	53
RFA_00628	rne5 links to Rfam database...	0.58	0.57	0.59	49	57208	64	7	27	30	37
RFA_00630	rne5 links to Rfam database...	0.48	0.47	0.49	41	56869	66	9	34	23	46
RFA_00632	HDV_ribozyme links to Rfam database...	0.25	0.25	0.27	7	4069	22	1	18	3	21
RFA_00636	HDV_ribozyme links to Rfam database...	0.40	0.39	0.41	11	3978	19	1	15	3	17
RFA_00639	7SK links to Rfam database...	0.10	0.10	0.09	9	54519	94	13	74	7	78
RFA_00642	Vimentin3 links to Rfam database...	-0.01	0.00	0.00	0	2906	20	2	18	0	18
RFA_00643	Vimentin3 links to Rfam database...	-0.01	0.00	0.00	0	2190	21	4	17	0	18
RFA_00644	Vimentin3 links to Rfam database...	-0.01	0.00	0.00	0	2682	21	0	19	2	18
RFA_00645	Vimentin3 links to Rfam database...	-0.01	0.00	0.00	0	2396	19	4	15	0	18
RFA_00649	Vimentin3 links to Rfam database...	0.42	0.44	0.40	8	2125	14	1	11	2	10
RFA_00651	Vimentin3 links to Rfam database...	0.10	0.11	0.11	2	2061	17	1	16	0	16
RFA_00653	Vimentin3 links to Rfam database...	-0.01	0.00	0.00	0	2123	22	4	18	0	18
RFA_00654	Vimentin3 links to Rfam database...	-0.01	0.00	0.00	0	2394	21	3	18	0	18
RFA_00658	Hammerhead_1 links to Rfam database...	0.56	0.50	0.64	7	1117	8	0	4	4	7
RFA_00659	Hammerhead_1 links to Rfam database...	0.20	0.21	0.21	3	1114	14	1	10	3	11
RFA_00664	Hammerhead_1 links to Rfam database...	-0.02	0.00	0.00	0	974	16	0	16	0	14
RFA_00667	Hammerhead_1 links to Rfam database...	0.27	0.29	0.27	4	975	12	1	10	1	10
RFA_00668	Hammerhead_1 links to Rfam database...	0.44	0.43	0.46	6	977	7	0	7	0	8
RFA_00672	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	893	12	0	10	2	13
RFA_00673	Hammerhead_1 links to Rfam database...	0.36	0.36	0.38	5	1115	10	0	8	2	9
RFA_00674	Hammerhead_1 links to Rfam database...	0.74	0.71	0.77	10	1115	5	0	3	2	4
RFA_00675	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	979	13	0	11	2	14
RFA_00677	Hammerhead_1 links to Rfam database...	0.55	0.57	0.53	8	975	10	0	7	3	6
RFA_00678	Hammerhead_1 links to Rfam database...	0.30	0.29	0.33	4	934	10	0	8	2	10
RFA_00680	Hammerhead_1 links to Rfam database...	0.42	0.43	0.43	6	1114	12	0	8	4	8
RFA_00684	Hammerhead_1 links to Rfam database...	0.37	0.29	0.50	4	982	4	1	3	0	10
RFA_00685	Hammerhead_1 links to Rfam database...	0.46	0.43	0.50	6	978	6	2	4	0	8
RFA_00695	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	7002	39	2	17	20	14
RFA_00703	Hammerhead_1 links to Rfam database...	0.39	0.43	0.35	6	4261	25	6	5	14	8
RFA_00704	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	979	11	2	9	0	14
RFA_00705	Hammerhead_1 links to Rfam database...	0.69	0.71	0.67	10	1020	6	0	5	1	4
RFA_00706	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	1023	12	2	10	0	14
RFA_00707	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	1025	11	0	10	1	14
RFA_00708	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	1025	10	1	9	0	14
RFA_00709	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	978	12	0	12	0	14
RFA_00710	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	978	12	1	11	0	14
RFA_00711	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	1022	14	2	11	1	14
RFA_00715	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	936	10	0	10	0	14
RFA_00716	Hammerhead_1 links to Rfam database...	0.06	0.07	0.07	1	932	13	0	13	0	13
RFA_00717	Hammerhead_1 links to Rfam database...	0.69	0.64	0.75	9	891	4	0	3	1	5
RFA_00730	s2m links to Rfam database...	0.48	0.42	0.56	5	894	6	0	4	2	7
RFA_00731	s2m links to Rfam database...	0.55	0.58	0.54	7	890	9	1	5	3	5
RFA_00733	s2m links to Rfam database...	0.23	0.25	0.23	3	890	12	1	9	2	9
RFA_00734	s2m links to Rfam database...	0.52	0.50	0.55	6	892	7	0	5	2	6
RFA_00736	s2m links to Rfam database...	0.48	0.42	0.56	5	894	7	0	4	3	7
RFA_00737	s2m links to Rfam database...	0.34	0.33	0.36	4	892	9	2	5	2	8
RFA_00745	s2m links to Rfam database...	0.66	0.67	0.67	8	934	8	0	4	4	4
RFA_00749	s2m links to Rfam database...	0.55	0.58	0.54	7	890	9	1	5	3	5
RFA_00758	s2m links to Rfam database...	0.45	0.42	0.50	5	893	5	0	5	0	7
RFA_00762	s2m links to Rfam database...	0.55	0.58	0.54	7	890	9	1	5	3	5
RFA_00763	s2m links to Rfam database...	0.58	0.58	0.58	7	891	8	0	5	3	5
RFA_00764	s2m links to Rfam database...	0.48	0.42	0.56	5	894	6	0	4	2	7
RFA_00765	s2m links to Rfam database...	0.36	0.42	0.33	5	888	13	0	10	3	7
RFA_00767	Corona_pk3 links to Rfam database...	0.48	0.44	0.53	8	1876	8	1	6	1	10
RFA_00768	Corona_pk3 links to Rfam database...	0.50	0.44	0.57	8	1877	8	1	5	2	10
RFA_00769	Corona_pk3 links to Rfam database...	0.41	0.44	0.38	8	1932	13	3	10	0	10
RFA_00770	Corona_pk3 links to Rfam database...	0.51	0.50	0.53	9	1999	12	2	6	4	9
RFA_00773	Corona_pk3 links to Rfam database...	0.42	0.39	0.47	7	1938	12	1	7	4	11
RFA_00779	Corona_pk3 links to Rfam database...	0.26	0.28	0.26	5	1934	14	6	8	0	13
RFA_00781	Gammaretro_CES links to Rfam database...	0.72	0.72	0.72	23	5018	13	0	9	4	9
RFA_00786	Gammaretro_CES links to Rfam database...	0.32	0.31	0.34	10	5021	22	2	17	3	22
RFA_00791	Gammaretro_CES links to Rfam database...	0.41	0.44	0.39	14	5115	23	5	17	1	18
RFA_00792	Gammaretro_CES links to Rfam database...	0.18	0.16	0.21	5	5026	20	2	17	1	27
RFA_00801	Gammaretro_CES links to Rfam database...	0.31	0.31	0.32	10	5019	22	2	19	1	22
RFA_00805	RNAIII links to Rfam database...	0.30	0.31	0.29	47	133225	121	13	101	7	103
RFA_00808	RydC links to Rfam database...	0.68	0.56	0.82	9	2005	2	2	0	0	7
RFA_00809	RydC links to Rfam database...	0.47	0.38	0.60	6	2135	6	0	4	2	10
RFA_00814	R2_retro_el links to Rfam database...	0.20	0.22	0.18	9	25149	62	12	30	20	32
RFA_00815	R2_retro_el links to Rfam database...	0.47	0.54	0.41	22	24477	47	14	18	15	19
RFA_00816	R2_retro_el links to Rfam database...	0.00	0.00	0.00	0	23162	66	17	41	8	41
RFA_00817	R2_retro_el links to Rfam database...	0.00	0.00	0.00	0	21892	57	12	41	4	41
RFA_00818	R2_retro_el links to Rfam database...	0.25	0.27	0.23	11	20253	51	12	25	14	30
RFA_00819	R2_retro_el links to Rfam database...	0.16	0.17	0.16	7	27921	70	6	32	32	34
RFA_00820	bicoid_3 links to Rfam database...	0.53	0.53	0.53	85	151364	102	9	67	26	75
RFA_00830	bicoid_3 links to Rfam database...	0.27	0.28	0.27	43	152469	144	14	102	28	111
SPR_00020	tRNA links to Rfam database...	0.31	0.35	0.28	7	2676	18	5	13	0	13
SPR_00023	tRNA links to Rfam database...	0.21	0.24	0.19	5	2824	21	6	15	0	16
SPR_00137	tRNA links to Rfam database...	0.49	0.57	0.43	12	2898	18	7	9	2	9
SPR_00273	tRNA links to Rfam database...	0.13	0.14	0.14	3	2828	20	3	16	1	18
SPR_00277	tRNA links to Rfam database...	0.30	0.33	0.28	7	2901	19	2	16	1	14
SPR_00394	tRNA links to Rfam database...	0.50	0.52	0.48	11	3632	16	6	6	4	10
SPR_00402	tRNA links to Rfam database...	0.73	0.76	0.70	16	2533	10	2	5	3	5
SPR_00721	tRNA links to Rfam database...	0.45	0.48	0.43	10	2903	14	0	13	1	11
SPR_00816	tRNA links to Rfam database...	0.95	0.95	0.95	19	3466	9	0	1	8	1
SPR_01157	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	4	0	0	4	0
SRP_00001	Bacteria_large_SRP links to Rfam database...	0.80	0.75	0.86	30	6751	10	1	4	5	10
SRP_00002	Metazoa_SRP links to Rfam database...	0.67	0.65	0.69	66	45054	38	6	24	8	36
SRP_00006	Metazoa_SRP links to Rfam database...	0.49	0.49	0.49	49	45654	54	4	46	4	52
SRP_00008	Bacteria_small_SRP links to Rfam database...	0.55	0.60	0.52	15	2897	14	4	10	0	10
SRP_00009	Plant_SRP links to Rfam database...	0.22	0.22	0.22	22	46567	78	10	66	2	80
SRP_00011	Plant_SRP links to Rfam database...	0.10	0.11	0.09	11	46242	107	10	97	0	93
SRP_00012	Plant_SRP links to Rfam database...	0.28	0.29	0.28	29	46258	80	9	64	7	72
SRP_00015	Plant_SRP links to Rfam database...	0.30	0.30	0.30	30	46259	73	8	63	2	69
SRP_00016	Archaea_SRP links to Rfam database...	0.79	0.81	0.78	88	47782	44	1	24	19	21
SRP_00018	Fungi_SRP links to Rfam database...	0.43	0.44	0.41	36	38415	63	11	41	11	45
SRP_00019	Fungi_SRP links to Rfam database...	0.36	0.35	0.38	32	35961	59	3	50	6	59
SRP_00020	Bacteria_small_SRP links to Rfam database...	0.93	0.94	0.91	31	5531	12	1	2	9	2
SRP_00024	Bacteria_large_SRP links to Rfam database...	0.51	0.49	0.53	43	37594	49	7	31	11	44
SRP_00026	Bacteria_large_SRP links to Rfam database...	0.68	0.68	0.69	60	36769	45	0	27	18	28
SRP_00027	Bacteria_large_SRP links to Rfam database...	0.52	0.51	0.54	44	37046	48	4	34	10	43
SRP_00030	Bacteria_large_SRP links to Rfam database...	0.30	0.31	0.29	27	36764	69	5	60	4	61
SRP_00031	Bacteria_large_SRP links to Rfam database...	0.64	0.61	0.67	54	36234	37	3	24	10	35
SRP_00037	Bacteria_large_SRP links to Rfam database...	0.17	0.17	0.17	15	36496	80	4	70	6	72
SRP_00038	Bacteria_small_SRP links to Rfam database...	0.33	0.33	0.34	11	5018	26	1	20	5	22
SRP_00040	Bacteria_small_SRP links to Rfam database...	0.58	0.61	0.56	19	5531	24	0	15	9	12
SRP_00042	Bacteria_small_SRP links to Rfam database...	0.32	0.36	0.30	9	3975	23	5	16	2	16
SRP_00043	Bacteria_small_SRP links to Rfam database...	0.47	0.48	0.47	14	5020	23	3	13	7	15
SRP_00044	Bacteria_small_SRP links to Rfam database...	0.86	0.84	0.87	27	6074	14	1	3	10	5
SRP_00046	Bacteria_small_SRP links to Rfam database...	0.53	0.53	0.53	17	4721	18	1	14	3	15
SRP_00050	Metazoa_SRP links to Rfam database...	0.85	0.84	0.86	83	44753	34	0	14	20	16
SRP_00051	Bacteria_small_SRP links to Rfam database...	0.93	0.93	0.93	28	5430	12	0	2	10	2
SRP_00053	Metazoa_SRP links to Rfam database...	0.02	0.02	0.02	2	45053	96	14	81	1	92
SRP_00054	Bacteria_small_SRP links to Rfam database...	0.62	0.63	0.63	20	5533	18	0	12	6	12
SRP_00056	Bacteria_small_SRP links to Rfam database...	0.77	0.78	0.76	29	6403	15	1	8	6	8
SRP_00057	Bacteria_small_SRP links to Rfam database...	0.38	0.40	0.36	14	6289	27	2	23	2	21
SRP_00058	Bacteria_small_SRP links to Rfam database...	0.93	0.94	0.91	32	5743	12	1	2	9	2
SRP_00060	Metazoa_SRP links to Rfam database...	0.60	0.59	0.60	59	44453	50	1	38	11	41
SRP_00061	Metazoa_SRP links to Rfam database...	0.39	0.41	0.38	41	44742	75	10	57	8	59
SRP_00066	Metazoa_SRP links to Rfam database...	0.14	0.14	0.14	14	45349	89	12	76	1	86
SRP_00067	Bacteria_small_SRP links to Rfam database...	0.43	0.47	0.40	18	5733	27	4	23	0	20
SRP_00069	Fungi_SRP links to Rfam database...	0.29	0.28	0.29	24	34371	62	6	52	4	61
SRP_00070	Fungi_SRP links to Rfam database...	0.20	0.24	0.17	29	126588	151	37	102	12	92
SRP_00072	Bacteria_small_SRP links to Rfam database...	0.65	0.66	0.66	19	6299	20	2	8	10	10
SRP_00073	Fungi_SRP links to Rfam database...	0.43	0.48	0.39	34	38973	64	14	39	11	37
SRP_00074	Bacteria_small_SRP links to Rfam database...	0.09	0.10	0.09	3	6521	35	5	26	4	26
SRP_00075	Bacteria_small_SRP links to Rfam database...	0.85	0.85	0.85	29	5531	15	0	5	10	5
SRP_00077	Bacteria_small_SRP links to Rfam database...	0.57	0.59	0.55	22	6630	24	1	17	6	15
SRP_00079	Plant_SRP links to Rfam database...	0.53	0.55	0.51	48	41811	63	9	37	17	40
SRP_00081	Bacteria_small_SRP links to Rfam database...	0.57	0.61	0.54	19	5530	21	2	14	5	12
SRP_00084	Bacteria_small_SRP links to Rfam database...	0.75	0.76	0.74	26	5425	15	1	8	6	8
SRP_00085	Plant_SRP links to Rfam database...	0.44	0.45	0.45	45	45350	59	10	46	3	56
SRP_00086	Metazoa_SRP links to Rfam database...	0.62	0.62	0.61	62	44152	51	4	35	12	38
SRP_00087	Fungi_SRP links to Rfam database...	0.27	0.34	0.22	20	37309	84	30	42	12	38
SRP_00088	Bacteria_large_SRP links to Rfam database...	0.38	0.38	0.38	34	34102	62	5	50	7	55
SRP_00089	Bacteria_large_SRP links to Rfam database...	0.66	0.67	0.66	60	35687	39	4	27	8	30
SRP_00090	Bacteria_large_SRP links to Rfam database...	0.41	0.39	0.44	35	35432	51	6	38	7	55
SRP_00091	Fungi_SRP links to Rfam database...	0.57	0.61	0.53	58	52865	65	10	42	13	37
SRP_00094	Bacteria_small_SRP links to Rfam database...	0.08	0.08	0.09	2	4072	22	1	20	1	22
SRP_00095	Bacteria_small_SRP links to Rfam database...	0.24	0.28	0.22	7	3973	26	6	19	1	18
SRP_00098	Bacteria_small_SRP links to Rfam database...	0.72	0.76	0.68	28	6400	20	1	12	7	9
SRP_00099	Plant_SRP links to Rfam database...	0.55	0.57	0.53	54	44749	60	9	38	13	41
SRP_00102	Metazoa_SRP links to Rfam database...	0.44	0.44	0.45	44	44454	60	4	49	7	57
SRP_00103	Metazoa_SRP links to Rfam database...	0.67	0.68	0.66	69	45346	44	3	33	8	33
SRP_00104	Fungi_SRP links to Rfam database...	0.16	0.17	0.15	12	34372	73	14	55	4	57
SRP_00105	Bacteria_small_SRP links to Rfam database...	0.18	0.18	0.19	6	5533	26	3	23	0	28
SRP_00106	Bacteria_large_SRP links to Rfam database...	0.64	0.72	0.58	18	5222	23	5	8	10	7
SRP_00107	Bacteria_small_SRP links to Rfam database...	0.30	0.37	0.25	7	3627	30	4	17	9	12
SRP_00117	Metazoa_SRP links to Rfam database...	0.65	0.63	0.67	64	45356	40	2	29	9	38
SRP_00121	Bacteria_small_SRP links to Rfam database...	0.59	0.60	0.58	15	4252	16	1	10	5	10
SRP_00123	Metazoa_SRP links to Rfam database...	0.29	0.29	0.30	26	36499	63	7	53	3	65
SRP_00124	Metazoa_SRP links to Rfam database...	0.54	0.56	0.53	48	37037	55	8	35	12	37
SRP_00127	Fungi_SRP links to Rfam database...	0.40	0.42	0.39	50	72261	83	14	65	4	69
SRP_00128	Bacteria_small_SRP links to Rfam database...	0.69	0.72	0.67	26	6747	18	1	12	5	10
SRP_00130	Archaea_SRP links to Rfam database...	0.21	0.22	0.20	21	49666	85	6	77	2	76
SRP_00132	Bacteria_small_SRP links to Rfam database...	0.64	0.66	0.63	19	4821	18	0	11	7	10
SRP_00134	Bacteria_large_SRP links to Rfam database...	0.71	0.76	0.67	22	5962	19	3	8	8	7
SRP_00136	Fungi_SRP links to Rfam database...	0.27	0.31	0.24	22	44161	76	15	55	6	49
SRP_00137	Bacteria_small_SRP links to Rfam database...	0.35	0.40	0.31	10	4154	22	7	15	0	15
SRP_00141	Bacteria_small_SRP links to Rfam database...	0.89	0.90	0.88	37	6286	11	1	4	6	4
SRP_00142	Archaea_SRP links to Rfam database...	0.21	0.23	0.20	21	45949	92	12	74	6	72
SRP_00143	Archaea_SRP links to Rfam database...	0.42	0.44	0.40	44	49660	75	6	60	9	57
SRP_00144	Archaea_SRP links to Rfam database...	0.36	0.38	0.34	36	46560	80	8	61	11	58
SRP_00145	Bacteria_small_SRP links to Rfam database...	0.23	0.23	0.24	9	6291	28	1	27	0	31
SRP_00146	Bacteria_small_SRP links to Rfam database...	0.24	0.22	0.28	8	5224	21	1	20	0	28
SRP_00148	Fungi_SRP links to Rfam database...	0.28	0.30	0.26	26	49985	93	7	68	18	61
SRP_00152	Plant_SRP links to Rfam database...	0.31	0.31	0.32	32	45653	73	9	59	5	71
SRP_00153	Plant_SRP links to Rfam database...	0.24	0.24	0.24	26	46862	85	6	77	2	81
SRP_00157	Fungi_SRP links to Rfam database...	0.24	0.26	0.23	19	44169	77	16	49	12	53
SRP_00158	Fungi_SRP links to Rfam database...	0.00	0.00	0.00	0	124087	164	45	119	0	115
SRP_00160	Fungi_SRP links to Rfam database...	0.25	0.25	0.24	33	86184	106	14	89	3	97
SRP_00161	Bacteria_small_SRP links to Rfam database...	0.45	0.45	0.45	10	2828	15	0	12	3	12
SRP_00162	Bacteria_small_SRP links to Rfam database...	0.50	0.52	0.48	12	2901	15	1	12	2	11
SRP_00163	Bacteria_small_SRP links to Rfam database...	0.63	0.65	0.61	17	3458	16	2	9	5	9
SRP_00164	Bacteria_small_SRP links to Rfam database...	0.96	0.97	0.94	34	6867	15	1	1	13	1
SRP_00170	Bacteria_small_SRP links to Rfam database...	0.32	0.36	0.29	9	4064	23	6	16	1	16
SRP_00171	Metazoa_SRP links to Rfam database...	0.17	0.19	0.16	17	45343	91	13	78	0	71
SRP_00173	Bacteria_large_SRP links to Rfam database...	0.27	0.26	0.28	23	38144	69	0	59	10	67
SRP_00174	Bacteria_large_SRP links to Rfam database...	0.26	0.27	0.26	23	38694	70	12	52	6	63
SRP_00175	Fungi_SRP links to Rfam database...	0.18	0.19	0.17	16	44457	86	10	68	8	68
SRP_00178	Plant_SRP links to Rfam database...	0.17	0.17	0.18	17	45657	84	9	70	5	85
SRP_00179	Plant_SRP links to Rfam database...	0.03	0.03	0.03	3	45955	98	7	91	0	102
SRP_00181	Plant_SRP links to Rfam database...	0.09	0.09	0.10	9	45963	84	12	72	0	93
SRP_00182	Plant_SRP links to Rfam database...	0.34	0.35	0.34	35	45952	72	13	56	3	66
SRP_00184	Plant_SRP links to Rfam database...	0.24	0.24	0.25	24	45961	75	7	64	4	76
SRP_00188	Plant_SRP links to Rfam database...	0.26	0.27	0.25	21	31041	64	13	50	1	58
SRP_00194	Bacteria_small_SRP links to Rfam database...	0.31	0.33	0.29	7	3216	17	6	11	0	14
SRP_00197	Archaea_SRP links to Rfam database...	0.36	0.37	0.36	37	49353	73	6	59	8	64
SRP_00198	Archaea_SRP links to Rfam database...	0.13	0.14	0.13	14	50935	101	10	81	10	89
SRP_00199	Archaea_SRP links to Rfam database...	0.18	0.19	0.18	20	50930	94	7	83	4	85
SRP_00200	Bacteria_small_SRP links to Rfam database...	0.34	0.33	0.35	12	6869	30	0	22	8	24
SRP_00201	Archaea_SRP links to Rfam database...	0.78	0.79	0.77	88	47780	40	7	20	13	23
SRP_00202	Archaea_SRP links to Rfam database...	0.85	0.86	0.83	101	54163	31	5	16	10	16
SRP_00203	Archaea_SRP links to Rfam database...	0.72	0.75	0.69	79	48714	53	2	33	18	26
SRP_00204	Archaea_SRP links to Rfam database...	0.71	0.69	0.74	70	49046	45	1	24	20	32
SRP_00206	Archaea_SRP links to Rfam database...	0.74	0.75	0.73	81	47784	43	6	24	13	27
SRP_00208	Archaea_SRP links to Rfam database...	0.80	0.80	0.80	81	46564	36	3	17	16	20
SRP_00209	Bacteria_small_SRP links to Rfam database...	0.52	0.56	0.50	15	4626	17	3	12	2	12
SRP_00213	Bacteria_small_SRP links to Rfam database...	0.35	0.40	0.31	10	4154	22	6	16	0	15
SRP_00215	Bacteria_small_SRP links to Rfam database...	0.82	0.80	0.83	20	3216	10	0	4	6	5
SRP_00216	Bacteria_small_SRP links to Rfam database...	0.58	0.59	0.57	16	3375	17	2	10	5	11
SRP_00217	Bacteria_small_SRP links to Rfam database...	0.26	0.29	0.25	7	3293	22	4	17	1	17
SRP_00219	Bacteria_small_SRP links to Rfam database...	0.91	0.91	0.91	21	3298	10	0	2	8	2
SRP_00222	Bacteria_small_SRP links to Rfam database...	0.28	0.28	0.29	7	3057	17	2	15	0	18
SRP_00227	Bacteria_small_SRP links to Rfam database...	0.81	0.81	0.81	25	5120	12	1	5	6	6
SRP_00228	Metazoa_SRP links to Rfam database...	0.61	0.61	0.62	58	45357	51	9	27	15	37
SRP_00229	Bacteria_small_SRP links to Rfam database...	0.28	0.30	0.28	8	5224	23	1	20	2	19
SRP_00230	Fungi_SRP links to Rfam database...	0.44	0.43	0.45	39	39534	55	4	44	7	51
SRP_00231	Bacteria_small_SRP links to Rfam database...	0.64	0.65	0.65	22	5426	15	1	11	3	12
SRP_00233	Bacteria_small_SRP links to Rfam database...	0.79	0.73	0.86	24	5123	10	0	4	6	9
SRP_00234	Bacteria_large_SRP links to Rfam database...	0.71	0.71	0.71	61	36229	43	4	21	18	25
SRP_00239	Plant_SRP links to Rfam database...	0.22	0.23	0.21	21	50305	78	14	63	1	72
SRP_00240	Plant_SRP links to Rfam database...	0.57	0.60	0.55	61	48095	57	8	41	8	41
SRP_00241	Plant_SRP links to Rfam database...	0.55	0.60	0.51	49	45959	61	14	34	13	33
SRP_00243	Bacteria_small_SRP links to Rfam database...	0.48	0.45	0.52	14	5124	16	2	11	3	17
SRP_00244	Bacteria_small_SRP links to Rfam database...	0.42	0.41	0.43	16	6866	21	1	20	0	23
SRP_00247	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	47177	103	23	78	2	87
SRP_00250	Bacteria_small_SRP links to Rfam database...	0.75	0.78	0.72	28	6747	21	1	10	10	8
SRP_00251	Bacteria_small_SRP links to Rfam database...	0.68	0.72	0.65	26	6981	20	1	13	6	10
SRP_00252	Metazoa_SRP links to Rfam database...	0.32	0.35	0.30	31	49039	79	12	59	8	58
SRP_00253	Metazoa_SRP links to Rfam database...	0.22	0.24	0.20	22	49346	89	14	73	2	68
SRP_00254	Fungi_SRP links to Rfam database...	0.00	0.00	0.00	0	32310	75	18	57	0	61
SRP_00255	Archaea_SRP links to Rfam database...	0.56	0.59	0.54	55	47485	59	7	39	13	39
SRP_00257	Metazoa_SRP links to Rfam database...	0.68	0.69	0.67	75	50928	49	5	32	12	33
SRP_00260	Metazoa_SRP links to Rfam database...	0.58	0.60	0.57	60	47790	58	8	37	13	40
SRP_00265	Fungi_SRP links to Rfam database...	0.16	0.19	0.14	14	41225	94	20	69	5	59
SRP_00266	Bacteria_small_SRP links to Rfam database...	0.69	0.66	0.73	19	4630	12	0	7	5	10
SRP_00267	Metazoa_SRP links to Rfam database...	0.72	0.71	0.74	68	44459	45	4	20	21	28
SRP_00268	Bacteria_small_SRP links to Rfam database...	0.36	0.37	0.36	10	4158	22	2	16	4	17
SRP_00269	Bacteria_small_SRP links to Rfam database...	0.31	0.30	0.33	10	5020	22	3	17	2	23
SRP_00270	Bacteria_small_SRP links to Rfam database...	0.40	0.39	0.41	12	4627	18	2	15	1	19
SRP_00271	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	3208	32	3	29	0	24
SRP_00273	Bacteria_small_SRP links to Rfam database...	0.85	0.83	0.87	33	6748	13	1	4	8	7
SRP_00274	Bacteria_small_SRP links to Rfam database...	0.68	0.68	0.68	26	6865	17	0	12	5	12
SRP_00276	Archaea_SRP links to Rfam database...	0.80	0.80	0.80	88	50611	41	1	21	19	22
SRP_00278	Archaea_SRP links to Rfam database...	0.69	0.70	0.69	74	45948	45	2	32	11	31
SRP_00282	Metazoa_SRP links to Rfam database...	0.08	0.10	0.07	6	43273	95	22	64	9	57
SRP_00285	Bacteria_small_SRP links to Rfam database...	0.61	0.53	0.70	16	3718	12	0	7	5	14
SRP_00286	Fungi_SRP links to Rfam database...	0.37	0.36	0.37	63	136856	122	6	101	15	111
SRP_00287	Fungi_SRP links to Rfam database...	0.27	0.28	0.26	45	141605	143	25	103	15	117
SRP_00290	Fungi_SRP links to Rfam database...	0.31	0.32	0.31	43	100438	105	12	83	10	92
SRP_00292	Fungi_SRP links to Rfam database...	0.29	0.29	0.29	50	137375	136	4	121	11	123
SRP_00294	Fungi_SRP links to Rfam database...	0.31	0.31	0.31	52	129117	130	9	108	13	115
SRP_00295	Bacteria_small_SRP links to Rfam database...	0.96	0.97	0.95	37	6864	11	1	1	9	1
SRP_00299	Metazoa_SRP links to Rfam database...	0.06	0.06	0.06	6	44145	102	10	92	0	93
SRP_00300	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	44158	95	10	85	0	94
SRP_00301	Fungi_SRP links to Rfam database...	0.50	0.48	0.52	41	32561	49	2	36	11	45
SRP_00302	Fungi_SRP links to Rfam database...	0.22	0.23	0.22	19	41528	74	11	58	5	62
SRP_00303	Bacteria_small_SRP links to Rfam database...	0.69	0.69	0.69	22	6638	19	0	10	9	10
SRP_00308	Bacteria_large_SRP links to Rfam database...	0.27	0.26	0.27	23	36231	62	13	48	1	65
SRP_00310	Bacteria_small_SRP links to Rfam database...	0.75	0.74	0.77	17	2904	10	0	5	5	6
SRP_00312	Bacteria_small_SRP links to Rfam database...	0.34	0.37	0.32	10	4155	24	4	17	3	17
SRP_00315	Bacteria_small_SRP links to Rfam database...	0.46	0.48	0.46	11	2902	18	0	13	5	12
SRP_00317	Metazoa_SRP links to Rfam database...	0.14	0.14	0.14	14	45051	89	6	79	4	84
SRP_00318	Bacteria_small_SRP links to Rfam database...	0.47	0.48	0.48	11	2980	16	1	11	4	12
SRP_00321	Archaea_SRP links to Rfam database...	0.73	0.72	0.74	78	47480	39	4	24	11	30
SRP_00322	Archaea_SRP links to Rfam database...	0.73	0.72	0.73	79	48408	38	3	26	9	30
SRP_00323	Archaea_SRP links to Rfam database...	0.74	0.73	0.76	78	47175	33	1	24	8	29
SRP_00324	Bacteria_small_SRP links to Rfam database...	0.57	0.62	0.53	18	5322	23	6	10	7	11
SRP_00325	Bacteria_small_SRP links to Rfam database...	0.77	0.73	0.83	24	4342	13	0	5	8	9
SRP_00326	Bacteria_small_SRP links to Rfam database...	0.18	0.19	0.18	6	5017	31	2	25	4	25
SRP_00328	Metazoa_SRP links to Rfam database...	0.32	0.33	0.31	28	39530	68	12	51	5	57
SRP_00329	Metazoa_SRP links to Rfam database...	0.31	0.33	0.30	28	39810	75	5	60	10	57
SRP_00330	Archaea_SRP links to Rfam database...	0.64	0.69	0.60	66	49976	58	9	35	14	29
SRP_00331	Metazoa_SRP links to Rfam database...	0.61	0.61	0.61	53	37588	49	3	31	15	34
SRP_00332	Archaea_SRP links to Rfam database...	0.88	0.88	0.89	93	50298	34	1	11	22	13
SRP_00333	Bacteria_small_SRP links to Rfam database...	0.76	0.68	0.85	23	5124	11	0	4	7	11
SRP_00335	Bacteria_large_SRP links to Rfam database...	0.27	0.38	0.19	15	35166	94	30	34	30	24
SRP_00337	Bacteria_large_SRP links to Rfam database...	0.61	0.60	0.61	55	35421	48	3	32	13	36
SRP_00338	Bacteria_small_SRP links to Rfam database...	0.94	0.94	0.94	34	5424	9	0	2	7	2
SRP_00339	Archaea_SRP links to Rfam database...	0.68	0.69	0.67	65	44454	47	7	25	15	29
SRP_00340	Metazoa_SRP links to Rfam database...	0.34	0.37	0.33	30	41236	75	10	52	13	52
SRP_00341	Bacteria_small_SRP links to Rfam database...	0.43	0.45	0.41	14	4719	25	0	20	5	17
SRP_00342	Bacteria_small_SRP links to Rfam database...	0.57	0.60	0.56	15	3978	19	1	11	7	10
SRP_00347	Metazoa_SRP links to Rfam database...	0.64	0.66	0.62	63	46564	51	5	33	13	33
SRP_00350	Bacteria_small_SRP links to Rfam database...	0.32	0.33	0.32	9	3888	20	6	13	1	18
SRP_00356	Bacteria_small_SRP links to Rfam database...	0.43	0.40	0.46	12	5024	22	1	13	8	18
SRP_00357	Bacteria_small_SRP links to Rfam database...	0.94	0.94	0.94	34	5320	8	1	1	6	2
SRP_00358	Bacteria_small_SRP links to Rfam database...	0.87	0.89	0.86	31	6292	15	1	4	10	4
SRP_00361	Plant_SRP links to Rfam database...	0.32	0.32	0.32	29	41815	65	7	54	4	61
SRP_00363	Bacteria_small_SRP links to Rfam database...	0.43	0.40	0.48	12	4728	17	3	10	4	18
SRP_00365	Bacteria_small_SRP links to Rfam database...	0.89	0.89	0.89	24	3376	10	0	3	7	3
SRP_00367	Bacteria_small_SRP links to Rfam database...	0.96	0.97	0.94	34	6750	11	1	1	9	1
SRP_00368	Metazoa_SRP links to Rfam database...	0.52	0.52	0.52	51	43857	56	5	43	8	47
SRP_00369	Bacteria_small_SRP links to Rfam database...	0.89	0.89	0.89	31	5743	11	1	3	7	4
SRP_00371	Fungi_SRP links to Rfam database...	0.43	0.46	0.40	38	36221	63	11	45	7	44
SRP_00382	Fungi_SRP links to Rfam database...	0.31	0.31	0.32	53	141611	125	8	106	11	117
SRP_00383	Bacteria_small_SRP links to Rfam database...	0.53	0.54	0.52	13	3215	18	2	10	6	11
TMR_00173	tmRNA links to Rfam database...	0.16	0.19	0.14	8	42138	90	11	38	41	34
TMR_00357	tmRNA links to Rfam database...	0.29	0.33	0.26	30	82913	101	26	59	16	62
TMR_00601	tmRNA links to Rfam database...	0.32	0.36	0.28	15	58943	88	14	24	50	27
TMR_00696	tmRNA links to Rfam database...	0.24	0.25	0.24	28	84961	109	13	76	20	86

^top

Performance of RSpredict(seed) - scored lower in this pairwise comparison

1. Total counts & total scores for RSpredict(seed)

Total Base Pair Counts
Total TP	5115
Total TN	25984089
Total FP	5166
Total FP CONTRA	444
Total FP INCONS	4134
Total FP COMP	588
Total FN	42912

Total Scores
MCC	0.237
Average MCC ± 95% Confidence Intervals	0.221 ± 0.022
Sensitivity	0.107
Positive Predictive Value	0.528
Nr of predictions	645

^top

2. Individual counts for RSpredict(seed) [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00001	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	34191	0	0	0	0	75
ASE_00002	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	35511	0	0	0	0	73
ASE_00004	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	47894	2	0	1	1	97
ASE_00005	RNaseP_bact_a links to Rfam database...	0.14	0.03	0.57	4	57963	3	0	3	0	113
ASE_00006	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	47583	3	0	3	0	93
ASE_00007	RNaseP_bact_a links to Rfam database...	0.16	0.05	0.56	5	59676	4	0	4	0	105
ASE_00009	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	26106	0	0	0	0	67
ASE_00010	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	49754	16	4	12	0	82
ASE_00012	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	73914	6	0	6	0	123
ASE_00014	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	54285	0	0	0	0	106
ASE_00017	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	51038	2	0	2	0	64
ASE_00018	RNaseP_bact_a links to Rfam database...	0.13	0.04	0.35	6	80584	11	0	11	0	128
ASE_00020	RNaseP_bact_a links to Rfam database...	0.04	0.01	0.25	1	73916	3	0	3	0	125
ASE_00021	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	104189	7	1	6	0	160
ASE_00022	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	83008	21	3	17	1	124
ASE_00023	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	84246	9	0	9	0	127
ASE_00025	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	78605	1	0	1	0	71
ASE_00026	RNaseP_bact_a links to Rfam database...	0.07	0.02	0.25	2	59677	6	1	5	0	108
ASE_00028	RNaseP_bact_b links to Rfam database...	0.02	0.01	0.05	1	84646	22	5	14	3	125
ASE_00029	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	83024	4	0	4	0	122
ASE_00030	RNaseP_bact_a links to Rfam database...	0.11	0.03	0.44	4	85482	5	0	5	0	141
ASE_00031	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	86724	12	2	10	0	126
ASE_00032	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	80196	5	0	4	1	118
ASE_00033	RNaseP_bact_a links to Rfam database...	0.12	0.03	0.44	4	64971	5	0	5	0	117
ASE_00035	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	70496	6	0	4	2	118
ASE_00036	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	75845	10	0	10	0	132
ASE_00037	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	59335	5	0	5	0	110
ASE_00038	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	53623	5	0	5	0	101
ASE_00040	RNaseP_bact_a links to Rfam database...	0.02	0.01	0.07	1	78989	13	0	13	0	132
ASE_00041	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	57624	6	0	6	0	108
ASE_00042	RNaseP_bact_a links to Rfam database...	0.09	0.03	0.29	4	90086	10	0	10	0	141
ASE_00044	RNaseP_bact_a links to Rfam database...	0.03	0.01	0.10	1	54605	9	0	9	0	104
ASE_00045	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	47271	9	0	7	2	80
ASE_00046	RNaseP_bact_a links to Rfam database...	0.11	0.03	0.43	3	50396	4	0	4	0	100
ASE_00047	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	74303	2	0	2	0	130
ASE_00052	RNaseP_bact_a links to Rfam database...	0.18	0.04	0.71	5	61418	2	0	2	0	107
ASE_00053	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	79398	3	0	3	0	133
ASE_00057	RNaseP_bact_a links to Rfam database...	0.05	0.01	0.17	2	82203	11	0	10	1	132
ASE_00064	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	45448	3	0	3	0	89
ASE_00066	RNaseP_bact_a links to Rfam database...	0.16	0.03	0.80	4	72385	1	0	1	0	126
ASE_00068	RNaseP_bact_a links to Rfam database...	0.05	0.01	0.25	1	37671	3	0	3	0	84
ASE_00069	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	83022	6	1	5	0	140
ASE_00074	RNaseP_bact_a links to Rfam database...	0.21	0.07	0.67	8	67884	4	0	4	0	111
ASE_00075	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	108804	8	0	7	1	162
ASE_00076	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	68256	9	0	9	0	118
ASE_00077	RNaseP_bact_a links to Rfam database...	0.09	0.02	0.33	2	45144	4	1	3	0	84
ASE_00078	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	43071	0	0	0	0	83
ASE_00079	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	55606	5	0	5	0	100
ASE_00080	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	71623	9	2	6	1	123
ASE_00081	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	49768	2	0	2	0	97
ASE_00082	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	70494	6	0	6	0	116
ASE_00083	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	62477	5	0	4	1	110
ASE_00084	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	53625	4	0	3	1	99
ASE_00087	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	88406	4	0	4	0	144
ASE_00090	RNaseP_bact_a links to Rfam database...	0.04	0.01	0.17	1	55605	5	0	5	0	100
ASE_00092	RNaseP_bact_a links to Rfam database...	0.04	0.01	0.20	1	63541	4	0	4	0	112
ASE_00096	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	63542	4	0	4	0	115
ASE_00099	RNaseP_bact_a links to Rfam database...	0.20	0.07	0.62	8	64607	5	0	5	0	112
ASE_00100	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	82213	2	1	1	0	76
ASE_00102	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	117845	10	0	10	0	166
ASE_00104	RNaseP_bact_a links to Rfam database...	0.10	0.03	0.31	4	64248	9	0	9	0	115
ASE_00105	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	64254	7	0	7	0	111
ASE_00107	RNaseP_bact_a links to Rfam database...	0.13	0.03	0.50	4	73145	4	0	4	0	123
ASE_00108	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	46969	2	2	0	0	63
ASE_00111	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	50084	2	2	0	0	57
ASE_00112	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	75461	5	1	4	0	116
ASE_00114	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	45440	14	0	11	3	77
ASE_00115	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	54615	0	0	0	0	101
ASE_00116	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	31626	0	0	0	0	66
ASE_00118	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	60722	6	0	4	2	102
ASE_00119	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	62834	3	0	1	2	108
ASE_00120	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	46970	1	0	1	0	94
ASE_00121	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	45150	0	0	0	0	92
ASE_00122	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	43360	6	0	5	1	88
ASE_00123	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	38499	4	0	4	0	85
ASE_00125	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	39337	3	0	3	0	88
ASE_00126	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	40468	2	0	2	0	82
ASE_00128	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	53297	4	1	3	0	100
ASE_00129	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	62821	18	1	13	4	111
ASE_00131	RNaseP_bact_a links to Rfam database...	0.30	0.15	0.59	13	39318	15	0	9	6	72
ASE_00132	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	50401	3	0	2	1	95
ASE_00134	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	50397	6	0	6	0	95
ASE_00135	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	63187	3	0	3	0	109
ASE_00136	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	48202	4	0	3	1	92
ASE_00137	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	48512	4	0	4	0	98
ASE_00138	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	40467	3	0	3	0	81
ASE_00139	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	54280	5	0	5	0	104
ASE_00140	RNaseP_bact_a links to Rfam database...	0.04	0.01	0.20	1	70871	4	1	3	0	124
ASE_00142	RNaseP_bact_a links to Rfam database...	0.06	0.02	0.25	2	67153	6	0	6	0	120
ASE_00145	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	70125	0	0	0	0	111
ASE_00146	RNaseP_bact_a links to Rfam database...	0.09	0.02	0.38	3	70868	5	0	5	0	121
ASE_00148	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	112574	1	1	0	0	154
ASE_00151	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	52000	4	1	2	1	98
ASE_00153	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	57629	1	1	0	0	73
ASE_00154	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	65341	0	0	0	0	107
ASE_00155	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	93528	0	0	0	0	142
ASE_00161	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	53619	12	2	7	3	87
ASE_00163	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	53297	4	1	3	0	93
ASE_00165	RNaseP_bact_a links to Rfam database...	0.11	0.02	0.67	2	52972	1	0	1	0	99
ASE_00168	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	60725	1	1	0	0	64
ASE_00169	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	57287	4	0	4	0	107
ASE_00170	RNaseP_bact_a links to Rfam database...	0.04	0.01	0.17	1	48822	5	0	5	0	92
ASE_00171	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	48513	4	0	3	1	94
ASE_00172	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	58988	8	0	8	0	106
ASE_00174	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	61075	0	0	0	0	109
ASE_00175	RNaseP_bact_a links to Rfam database...	0.05	0.02	0.14	2	60017	14	0	12	2	105
ASE_00176	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	60020	11	3	8	0	110
ASE_00179	RNaseP_bact_a links to Rfam database...	0.09	0.04	0.23	3	44240	12	1	9	2	81
ASE_00180	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	51355	5	3	2	0	100
ASE_00181	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	57627	3	0	3	0	106
ASE_00182	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	84254	1	0	1	0	136
ASE_00184	RNaseP_bact_a links to Rfam database...	0.09	0.03	0.30	3	54605	7	0	7	0	99
ASE_00185	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	73531	5	0	5	0	128
ASE_00186	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	78994	9	1	8	0	132
ASE_00187	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	68630	5	3	2	0	115
ASE_00189	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	63180	13	1	9	3	102
ASE_00190	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	45437	15	3	11	1	90
ASE_00191	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	29646	0	0	0	0	61
ASE_00192	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	84653	14	3	10	1	133
ASE_00194	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	73523	15	0	13	2	119
ASE_00196	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	31626	0	0	0	0	75
ASE_00197	RNaseP_bact_a links to Rfam database...	0.03	0.01	0.13	1	89245	7	0	7	0	144
ASE_00198	RNaseP_bact_a links to Rfam database...	0.15	0.04	0.57	4	52643	3	0	3	0	98
ASE_00203	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46663	2	0	2	0	96
ASE_00204	RNaseP_bact_b links to Rfam database...	0.06	0.03	0.13	3	67873	20	6	14	0	109
ASE_00205	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	46056	0	0	0	0	90
ASE_00209	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	43071	0	0	0	0	88
ASE_00210	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	27261	0	0	0	0	65
ASE_00212	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	93956	5	0	5	0	148
ASE_00213	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	27261	0	0	0	0	66
ASE_00214	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	56271	9	0	9	0	103
ASE_00215	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	48513	3	0	3	0	99
ASE_00216	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	39338	2	0	2	0	82
ASE_00217	RNaseP_bact_a links to Rfam database...	0.16	0.04	0.57	4	40463	3	0	3	0	86
ASE_00221	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	64617	3	0	3	0	117
ASE_00222	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	112101	0	0	0	0	157
ASE_00227	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	78993	10	3	7	0	133
ASE_00228	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46967	4	0	4	0	86
ASE_00229	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	42482	4	1	3	0	87
ASE_00231	RNaseP_bact_a links to Rfam database...	0.07	0.02	0.22	2	47886	8	2	5	1	94
ASE_00232	RNaseP_bact_a links to Rfam database...	0.09	0.02	0.33	2	38497	4	0	4	0	82
ASE_00234	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	75463	3	1	2	0	129
ASE_00237	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	45751	2	0	2	0	56
ASE_00238	RNaseP_bact_a links to Rfam database...	0.07	0.01	0.50	1	64259	1	0	1	0	113
ASE_00240	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46660	5	0	5	0	93
ASE_00241	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	43954	2	0	2	0	87
ASE_00242	RNaseP_bact_a links to Rfam database...	0.12	0.04	0.40	4	61065	6	0	6	0	108
ASE_00245	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	55278	2	0	0	2	78
ASE_00246	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	48202	3	0	3	0	67
ASE_00247	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	54284	1	1	0	0	64
ASE_00248	RNaseP_bact_a links to Rfam database...	0.11	0.03	0.43	3	62474	4	0	4	0	111
ASE_00250	RNaseP_bact_a links to Rfam database...	0.08	0.02	0.30	3	78993	7	0	7	0	128
ASE_00251	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	17766	0	0	0	0	43
ASE_00252	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	115437	4	0	3	1	168
ASE_00254	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	36850	6	1	5	0	82
ASE_00255	RNaseP_bact_a links to Rfam database...	0.12	0.03	0.50	4	74683	4	0	4	0	126
ASE_00257	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	51035	5	0	5	0	97
ASE_00258	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	26796	0	0	0	0	54
ASE_00259	RNaseP_bact_a links to Rfam database...	0.11	0.02	0.50	3	73147	3	0	3	0	118
ASE_00263	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	70490	10	0	10	0	120
ASE_00264	RNaseP_nuc links to Rfam database...	0.12	0.02	0.67	2	49138	3	0	1	2	98
ASE_00267	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	45145	6	0	5	1	88
ASE_00270	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	72388	3	0	2	1	128
ASE_00274	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	55608	3	0	3	0	103
ASE_00277	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	48203	2	0	2	0	91
ASE_00279	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	53299	2	0	2	0	101
ASE_00280	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	52001	2	0	2	0	98
ASE_00281	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	44548	3	0	3	0	88
ASE_00282	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	77811	4	0	4	0	127
ASE_00283	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	61769	7	0	7	0	107
ASE_00284	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	58309	2	1	1	0	108
ASE_00285	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	69000	6	0	6	0	122
ASE_00286	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46659	6	0	6	0	92
ASE_00287	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	54939	7	0	7	0	103
ASE_00288	RNaseP_bact_a links to Rfam database...	0.10	0.02	0.50	2	46052	2	0	2	0	91
ASE_00289	RNaseP_bact_a links to Rfam database...	0.05	0.01	0.18	2	101014	10	1	8	1	155
ASE_00292	RNaseP_bact_a links to Rfam database...	0.15	0.04	0.50	6	81798	6	0	6	0	132
ASE_00294	RNaseP_bact_a links to Rfam database...	0.08	0.02	0.31	4	114468	9	0	9	0	167
ASE_00295	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	73909	11	0	11	0	131
ASE_00296	RNaseP_bact_a links to Rfam database...	0.09	0.03	0.29	4	91792	10	1	9	0	141
ASE_00297	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	52972	3	0	3	0	98
ASE_00298	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	67525	3	1	2	0	113
ASE_00299	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	49451	5	0	4	1	100
ASE_00303	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	67895	1	0	1	0	95
ASE_00305	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	54596	22	4	15	3	85
ASE_00313	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	62479	4	0	2	2	89
ASE_00316	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	107880	0	0	0	0	98
ASE_00318	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	80184	21	0	16	5	118
ASE_00321	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	54597	21	1	17	3	88
ASE_00327	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	57285	6	1	5	0	89
ASE_00328	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	72760	15	0	11	4	112
ASE_00329	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	40755	0	0	0	0	63
ASE_00330	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	56277	3	0	3	0	90
ASE_00332	RNaseP_bact_a links to Rfam database...	0.15	0.04	0.50	6	81798	6	0	6	0	132
ASE_00335	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	75451	19	1	14	4	116
ASE_00337	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	39340	2	0	0	2	71
ASE_00338	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	66427	3	0	3	0	98
ASE_00339	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	80192	8	0	8	0	119
ASE_00340	RNaseP_bact_a links to Rfam database...	0.04	0.01	0.14	1	46049	6	0	6	0	84
ASE_00342	RNaseP_bact_a links to Rfam database...	0.09	0.03	0.30	3	62471	7	0	7	0	112
ASE_00343	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	83429	8	1	6	1	113
ASE_00346	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	48205	0	0	0	0	97
ASE_00353	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	57968	2	0	2	0	107
ASE_00359	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	42778	0	0	0	0	80
ASE_00360	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	29403	0	0	0	0	65
ASE_00361	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	75463	3	0	3	0	127
ASE_00362	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	48200	5	0	5	0	91
ASE_00363	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	51354	6	0	6	0	94
ASE_00364	RNaseP_bact_a links to Rfam database...	0.11	0.02	0.67	2	54282	1	0	1	0	103
ASE_00366	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	58652	1	0	1	0	98
ASE_00367	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	43067	5	0	4	1	86
ASE_00369	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	55939	6	1	5	0	107
ASE_00370	RNaseP_bact_a links to Rfam database...	0.10	0.02	0.40	2	41900	3	0	3	0	82
ASE_00372	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	51997	6	0	6	0	100
ASE_00374	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	44843	7	0	7	0	88
ASE_00375	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	60373	5	0	5	0	110
ASE_00376	RNaseP_bact_a links to Rfam database...	0.04	0.01	0.17	1	56947	5	0	5	0	104
ASE_00377	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	57628	2	0	2	0	107
ASE_00379	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46050	7	0	6	1	89
ASE_00380	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	54942	4	2	2	0	99
ASE_00382	RNaseP_bact_a links to Rfam database...	0.06	0.01	0.33	1	41902	3	0	2	1	83
ASE_00383	RNaseP_bact_a links to Rfam database...	0.06	0.01	0.33	1	54612	2	0	2	0	104
ASE_00384	RNaseP_bact_a links to Rfam database...	0.05	0.01	0.20	1	48511	4	0	4	0	91
ASE_00385	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	41902	3	0	3	0	81
ASE_00386	RNaseP_bact_a links to Rfam database...	0.10	0.03	0.33	3	50394	7	0	6	1	93
ASE_00387	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	55940	5	0	5	0	104
ASE_00388	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	45749	5	0	4	1	89
ASE_00390	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	42192	4	0	3	1	85
ASE_00393	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	47891	4	0	4	0	93
ASE_00394	RNaseP_bact_a links to Rfam database...	0.03	0.01	0.07	1	46956	15	0	14	1	92
ASE_00395	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	41612	6	0	4	2	84
ASE_00396	RNaseP_bact_a links to Rfam database...	0.15	0.04	0.60	3	41611	2	0	2	0	80
ASE_00397	RNaseP_bact_a links to Rfam database...	0.04	0.01	0.17	1	54609	5	1	4	0	104
ASE_00398	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	55934	11	0	11	0	104
ASE_00400	RNaseP_bact_a links to Rfam database...	0.08	0.02	0.33	2	57964	4	3	1	0	104
ASE_00401	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	77015	13	0	13	0	126
ASE_00402	RNaseP_bact_a links to Rfam database...	0.05	0.01	0.25	1	42482	3	0	3	0	84
ASE_00403	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	55941	4	0	4	0	107
ASE_00404	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	43065	9	0	6	3	85
ASE_00406	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	48823	6	0	5	1	94
ASE_00411	RNaseP_bact_a links to Rfam database...	0.11	0.02	0.50	2	49451	2	0	2	0	87
ASE_00412	RNaseP_bact_a links to Rfam database...	0.04	0.01	0.17	1	58305	5	1	4	0	104
ASE_00413	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	44546	5	0	5	0	81
ASE_00414	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46359	1	0	1	0	95
ASE_00415	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	54941	5	1	4	0	103
ASE_00416	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	77412	9	0	9	0	127
ASE_00417	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	54615	0	0	0	0	100
ASE_00418	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	38781	0	0	0	0	75
ASE_00419	RNaseP_bact_a links to Rfam database...	0.10	0.03	0.33	3	54937	6	0	6	0	100
ASE_00420	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	43365	0	0	0	0	63
ASE_00422	RNaseP_bact_a links to Rfam database...	0.05	0.02	0.12	2	46954	19	1	14	4	92
ASE_00423	RNaseP_bact_a links to Rfam database...	0.14	0.04	0.50	4	56945	4	0	4	0	105
ASE_00426	RNaseP_bact_a links to Rfam database...	0.11	0.04	0.31	4	61062	9	0	9	0	104
ASE_00427	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	40755	0	0	0	0	46
ASE_00428	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	76629	8	0	7	1	125
ASE_00430	RNaseP_bact_a links to Rfam database...	0.07	0.02	0.25	2	46963	6	0	6	0	95
ASE_00431	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46358	2	0	2	0	95
ASE_00434	RNaseP_bact_b links to Rfam database...	0.04	0.02	0.11	2	68246	20	1	16	3	108
ASE_00437	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	79395	7	0	6	1	135
ASE_00438	RNaseP_bact_a links to Rfam database...	0.02	0.01	0.07	1	66052	13	2	11	0	115
ASE_00441	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	64258	3	0	3	0	112
ASE_00443	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	26794	2	0	2	0	50
ASE_00447	RNaseP_bact_a links to Rfam database...	0.15	0.03	0.67	4	60372	2	0	2	0	112
ASE_00448	RNaseP_bact_a links to Rfam database...	0.04	0.01	0.14	1	64254	6	1	5	0	111
ASE_00451	RNaseP_bact_a links to Rfam database...	0.11	0.03	0.36	4	70865	7	0	7	0	121
ASE_00454	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	43365	0	0	0	0	63
CRW_00013	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	103737	3	0	3	0	115
CRW_00016	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	77418	3	0	3	0	120
CRW_00610	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	36310	5	0	5	0	81
CRW_00613	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	34979	1	0	1	0	78
CRW_00614	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	121764	17	0	7	10	57
CRW_00618	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	56279	1	0	1	0	61
CRW_00619	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	165014	28	5	6	17	73
CRW_00620	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	150964	27	4	7	16	63
CRW_00621	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	153172	32	5	4	23	71
CRW_00623	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	129777	25	6	12	7	83
CRW_00633	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	63541	5	0	5	0	106
CRW_00634	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	64620	1	0	0	1	94
CRW_00670	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	70124	4	0	1	3	120
CRW_00671	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	62835	0	0	0	0	117
CRW_00672	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	72386	7	0	4	3	111
CRW_00674	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	83436	1	0	0	1	124
CRW_00676	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	93527	2	0	1	1	115
CRW_00692	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	68635	3	0	0	3	90
PDB_00005	Tymo_tRNA-like links to Rfam database...	0.71	0.57	0.89	8	937	1	0	1	0	6
PDB_00012	mir-TAR links to Rfam database...	1.00	1.00	1.00	7	399	1	0	0	1	0
PDB_00213	Gammaretro_CES links to Rfam database...	0.56	0.49	0.65	20	5019	11	0	11	0	21
PDB_00553	mir-TAR links to Rfam database...	0.90	0.82	1.00	9	456	0	0	0	0	2
PDB_00716	HDV_ribozyme links to Rfam database...	0.59	0.48	0.73	11	2686	4	0	4	0	12
PDB_00741	Entero_5_CRE links to Rfam database...	0.00	0.00	0.00	0	703	0	0	0	0	17
PDB_00810	s2m links to Rfam database...	0.80	0.65	1.00	11	1070	0	0	0	0	6
PDB_00827	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	27026	2	0	2	0	81
PDB_00828	Purine links to Rfam database...	0.54	0.41	0.73	11	2470	4	2	2	0	16
PDB_00829	Purine links to Rfam database...	0.74	0.63	0.88	15	2261	2	2	0	0	9
PDB_00876	HIV_FE links to Rfam database...	0.57	0.50	0.67	10	975	5	0	5	0	10
PDB_00919	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	44249	5	0	4	1	103
PDB_01001	tRNA links to Rfam database...	0.00	0.00	0.00	0	2144	1	0	1	0	18
PDB_01020	Purine links to Rfam database...	0.76	0.65	0.88	15	2261	2	2	0	0	8
PDB_01050	UnaL2 links to Rfam database...	0.62	0.46	0.86	6	623	2	0	1	1	7
PDB_01051	Telomerase-cil links to Rfam database...	-0.01	0.00	0.00	0	899	4	2	2	0	13
PDB_01073	SAM links to Rfam database...	0.39	0.18	0.86	6	4364	1	0	1	0	28
PDB_01092	glmS links to Rfam database...	0.48	0.37	0.63	19	10123	13	1	10	2	33
PDB_01114	TPP links to Rfam database...	0.74	0.56	1.00	15	2835	0	0	0	0	12
PDB_01152	HIV_FS2 links to Rfam database...	0.88	0.79	1.00	11	550	0	0	0	0	3
PDB_01236	ykoK links to Rfam database...	0.00	0.00	0.00	0	11621	7	0	7	0	54
RFA_00389	Hammerhead_3 links to Rfam database...	0.63	0.40	1.00	6	1425	1	0	0	1	9
RFA_00390	Hammerhead_3 links to Rfam database...	0.63	0.40	1.00	6	1425	1	0	0	1	9
RFA_00391	Hammerhead_3 links to Rfam database...	0.63	0.40	1.00	6	1425	1	0	0	1	9
RFA_00396	Hammerhead_3 links to Rfam database...	0.63	0.40	1.00	6	1425	1	0	0	1	9
RFA_00402	Hammerhead_3 links to Rfam database...	0.63	0.40	1.00	6	1425	0	0	0	0	9
RFA_00409	Hammerhead_3 links to Rfam database...	0.58	0.33	1.00	5	1426	1	0	0	1	10
RFA_00416	Hammerhead_3 links to Rfam database...	0.63	0.40	1.00	6	1479	1	0	0	1	9
RFA_00425	Hammerhead_3 links to Rfam database...	0.63	0.40	1.00	6	1647	0	0	0	0	9
RFA_00427	Hammerhead_3 links to Rfam database...	0.00	0.00	0.00	0	1482	3	0	3	0	15
RFA_00433	Hammerhead_3 links to Rfam database...	0.63	0.40	1.00	6	1425	1	0	0	1	9
RFA_00434	Hammerhead_3 links to Rfam database...	0.63	0.40	1.00	6	1425	1	0	0	1	9
RFA_00436	Hammerhead_3 links to Rfam database...	0.63	0.40	1.00	6	1425	1	0	0	1	9
RFA_00440	Hammerhead_3 links to Rfam database...	0.63	0.40	1.00	6	1479	1	0	0	1	9
RFA_00442	Hammerhead_3 links to Rfam database...	0.63	0.40	1.00	6	1425	1	0	0	1	9
RFA_00444	Hammerhead_3 links to Rfam database...	0.00	0.00	0.00	0	1538	2	0	2	0	15
RFA_00446	Hammerhead_3 links to Rfam database...	-0.01	0.00	0.00	0	1481	4	0	4	0	15
RFA_00449	Hammerhead_3 links to Rfam database...	-0.01	0.00	0.00	0	1481	4	0	4	0	15
RFA_00582	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	5980	4	0	0	4	0
RFA_00583	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4935	7	0	0	7	0
RFA_00584	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	2911	2	0	0	2	0
RFA_00585	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4836	6	0	0	6	0
RFA_00586	Y_RNA links to Rfam database...	0.97	0.93	1.00	14	3902	2	0	0	2	1
RFA_00587	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4836	4	0	0	4	0
RFA_00588	Y_RNA links to Rfam database...	0.97	0.93	1.00	14	4546	4	0	0	4	1
RFA_00589	Y_RNA links to Rfam database...	0.93	0.87	1.00	13	4358	3	0	0	3	2
RFA_00594	Y_RNA links to Rfam database...	0.93	0.87	1.00	13	2762	2	0	0	2	2
RFA_00596	Y_RNA links to Rfam database...	0.82	0.67	1.00	10	5985	5	0	0	5	5
RFA_00597	Telomerase-vert links to Rfam database...	0.00	0.00	0.00	0	97889	17	4	10	3	109
RFA_00598	Telomerase-vert links to Rfam database...	0.00	0.00	0.00	0	84655	11	0	11	0	101
RFA_00599	Telomerase-vert links to Rfam database...	0.43	0.25	0.74	28	101437	25	0	10	15	83
RFA_00600	Telomerase-vert links to Rfam database...	0.00	0.00	0.00	0	120278	17	1	16	0	100
RFA_00601	Telomerase-vert links to Rfam database...	0.57	0.38	0.86	43	99185	16	1	6	9	71
RFA_00602	Telomerase-vert links to Rfam database...	0.09	0.02	0.50	2	101471	3	1	1	1	114
RFA_00603	Telomerase-cil links to Rfam database...	0.00	0.00	0.00	0	13520	11	2	8	1	35
RFA_00604	Telomerase-cil links to Rfam database...	0.00	0.00	0.00	0	13529	1	0	1	0	35
RFA_00605	Telomerase-cil links to Rfam database...	0.00	0.00	0.00	0	15215	11	2	8	1	35
RFA_00606	Telomerase-cil links to Rfam database...	0.00	0.00	0.00	0	21309	12	3	9	0	39
RFA_00607	Telomerase-cil links to Rfam database...	0.00	0.00	0.00	0	17752	15	0	14	1	36
RFA_00609	Telomerase-cil links to Rfam database...	0.00	0.00	0.00	0	17949	9	1	5	3	37
RFA_00610	Telomerase-cil links to Rfam database...	0.00	0.00	0.00	0	17195	10	3	7	0	37
RFA_00611	Telomerase-cil links to Rfam database...	0.00	0.00	0.00	0	13032	10	0	9	1	35
RFA_00613	Telomerase-cil links to Rfam database...	0.00	0.00	0.00	0	12879	1	0	1	0	35
RFA_00615	Telomerase-cil links to Rfam database...	0.00	0.00	0.00	0	13360	6	0	6	0	35
RFA_00620	Telomerase-cil links to Rfam database...	0.00	0.00	0.00	0	21941	4	0	4	0	39
RFA_00621	RNase_MRP links to Rfam database...	0.00	0.00	0.00	0	46359	1	0	1	0	76
RFA_00623	RNase_MRP links to Rfam database...	0.00	0.00	0.00	0	43955	1	0	1	0	78
RFA_00624	RNase_MRP links to Rfam database...	0.00	0.00	0.00	0	30135	0	0	0	0	61
RFA_00626	rne5 links to Rfam database...	0.90	0.80	1.00	70	56546	12	0	0	12	17
RFA_00627	rne5 links to Rfam database...	0.90	0.82	0.99	71	56881	11	0	1	10	16
RFA_00628	rne5 links to Rfam database...	0.89	0.81	0.97	70	57219	12	0	2	10	16
RFA_00630	rne5 links to Rfam database...	0.85	0.75	0.97	65	56886	11	0	2	9	22
RFA_00632	HDV_ribozyme links to Rfam database...	0.47	0.39	0.58	11	4076	8	3	5	0	17
RFA_00636	HDV_ribozyme links to Rfam database...	0.62	0.54	0.71	15	3984	6	3	3	0	13
RFA_00639	7SK links to Rfam database...	0.59	0.48	0.72	42	54557	30	3	13	14	45
RFA_00642	Vimentin3 links to Rfam database...	0.31	0.22	0.44	4	2917	5	0	5	0	14
RFA_00643	Vimentin3 links to Rfam database...	0.21	0.17	0.27	3	2200	8	0	8	0	15
RFA_00644	Vimentin3 links to Rfam database...	0.36	0.33	0.40	6	2686	9	1	8	0	12
RFA_00645	Vimentin3 links to Rfam database...	0.31	0.28	0.36	5	2401	9	1	8	0	13
RFA_00649	Vimentin3 links to Rfam database...	0.37	0.33	0.43	6	2131	8	0	8	0	12
RFA_00651	Vimentin3 links to Rfam database...	0.32	0.28	0.38	5	2067	8	0	8	0	13
RFA_00653	Vimentin3 links to Rfam database...	0.36	0.33	0.40	6	2130	9	1	8	0	12
RFA_00654	Vimentin3 links to Rfam database...	0.35	0.28	0.45	5	2404	6	0	6	0	13
RFA_00658	Hammerhead_1 links to Rfam database...	0.64	0.57	0.73	8	1117	4	0	3	1	6
RFA_00659	Hammerhead_1 links to Rfam database...	0.35	0.29	0.44	4	1119	6	0	5	1	10
RFA_00664	Hammerhead_1 links to Rfam database...	0.59	0.50	0.70	7	980	4	0	3	1	7
RFA_00667	Hammerhead_1 links to Rfam database...	0.64	0.57	0.73	8	979	4	0	3	1	6
RFA_00668	Hammerhead_1 links to Rfam database...	0.71	0.57	0.89	8	981	1	0	1	0	6
RFA_00672	Hammerhead_1 links to Rfam database...	0.61	0.54	0.70	7	893	3	0	3	0	6
RFA_00673	Hammerhead_1 links to Rfam database...	0.42	0.36	0.50	5	1118	6	0	5	1	9
RFA_00674	Hammerhead_1 links to Rfam database...	0.69	0.64	0.75	9	1116	4	0	3	1	5
RFA_00675	Hammerhead_1 links to Rfam database...	0.62	0.50	0.78	7	981	3	0	2	1	7
RFA_00677	Hammerhead_1 links to Rfam database...	0.72	0.64	0.82	9	979	2	0	2	0	5
RFA_00678	Hammerhead_1 links to Rfam database...	0.43	0.29	0.67	4	940	3	0	2	1	10
RFA_00680	Hammerhead_1 links to Rfam database...	0.69	0.64	0.75	9	1116	4	0	3	1	5
RFA_00684	Hammerhead_1 links to Rfam database...	0.80	0.64	1.00	9	981	1	0	0	1	5
RFA_00685	Hammerhead_1 links to Rfam database...	0.64	0.57	0.73	8	979	4	0	3	1	6
RFA_00695	Hammerhead_1 links to Rfam database...	0.31	0.14	0.67	2	7018	2	0	1	1	12
RFA_00703	Hammerhead_1 links to Rfam database...	0.54	0.36	0.83	5	4272	1	0	1	0	9
RFA_00704	Hammerhead_1 links to Rfam database...	0.35	0.29	0.44	4	981	6	0	5	1	10
RFA_00705	Hammerhead_1 links to Rfam database...	0.80	0.64	1.00	9	1026	1	0	0	1	5
RFA_00706	Hammerhead_1 links to Rfam database...	0.56	0.43	0.75	6	1027	3	0	2	1	8
RFA_00707	Hammerhead_1 links to Rfam database...	0.67	0.57	0.80	8	1025	3	0	2	1	6
RFA_00708	Hammerhead_1 links to Rfam database...	0.75	0.57	1.00	8	1027	1	0	0	1	6
RFA_00709	Hammerhead_1 links to Rfam database...	0.53	0.43	0.67	6	981	3	0	3	0	8
RFA_00710	Hammerhead_1 links to Rfam database...	0.43	0.29	0.67	4	984	2	0	2	0	10
RFA_00711	Hammerhead_1 links to Rfam database...	0.35	0.21	0.60	3	1030	3	0	2	1	11
RFA_00715	Hammerhead_1 links to Rfam database...	0.66	0.50	0.88	7	938	2	0	1	1	7
RFA_00716	Hammerhead_1 links to Rfam database...	0.56	0.43	0.75	6	938	3	0	2	1	8
RFA_00717	Hammerhead_1 links to Rfam database...	0.50	0.36	0.71	5	896	2	0	2	0	9
RFA_00730	s2m links to Rfam database...	0.91	0.83	1.00	10	893	1	0	0	1	2
RFA_00731	s2m links to Rfam database...	0.91	0.83	1.00	10	893	1	0	0	1	2
RFA_00733	s2m links to Rfam database...	0.91	0.83	1.00	10	893	1	0	0	1	2
RFA_00734	s2m links to Rfam database...	0.91	0.83	1.00	10	893	0	0	0	0	2
RFA_00736	s2m links to Rfam database...	0.91	0.83	1.00	10	893	1	0	0	1	2
RFA_00737	s2m links to Rfam database...	0.91	0.83	1.00	10	893	1	0	0	1	2
RFA_00745	s2m links to Rfam database...	0.91	0.83	1.00	10	936	1	0	0	1	2
RFA_00749	s2m links to Rfam database...	0.91	0.83	1.00	10	893	1	0	0	1	2
RFA_00758	s2m links to Rfam database...	0.86	0.75	1.00	9	894	0	0	0	0	3
RFA_00762	s2m links to Rfam database...	0.91	0.83	1.00	10	893	0	0	0	0	2
RFA_00763	s2m links to Rfam database...	0.91	0.83	1.00	10	893	1	0	0	1	2
RFA_00764	s2m links to Rfam database...	0.91	0.83	1.00	10	893	1	0	0	1	2
RFA_00765	s2m links to Rfam database...	0.91	0.83	1.00	10	893	1	0	0	1	2
RFA_00767	Corona_pk3 links to Rfam database...	0.19	0.17	0.23	3	1878	10	3	7	0	15
RFA_00768	Corona_pk3 links to Rfam database...	0.19	0.17	0.23	3	1878	10	3	7	0	15
RFA_00769	Corona_pk3 links to Rfam database...	0.59	0.56	0.63	10	1937	6	4	2	0	8
RFA_00770	Corona_pk3 links to Rfam database...	0.54	0.56	0.53	10	1997	9	6	3	0	8
RFA_00773	Corona_pk3 links to Rfam database...	0.50	0.50	0.50	9	1935	9	6	3	0	9
RFA_00779	Corona_pk3 links to Rfam database...	0.50	0.50	0.50	9	1935	9	6	3	0	9
RFA_00781	Gammaretro_CES links to Rfam database...	0.61	0.59	0.63	19	5020	12	2	9	1	13
RFA_00786	Gammaretro_CES links to Rfam database...	0.61	0.59	0.63	19	5020	12	2	9	1	13
RFA_00791	Gammaretro_CES links to Rfam database...	0.58	0.53	0.63	17	5124	11	2	8	1	15
RFA_00792	Gammaretro_CES links to Rfam database...	0.64	0.63	0.67	20	5020	11	2	8	1	12
RFA_00801	Gammaretro_CES links to Rfam database...	0.59	0.56	0.62	18	5021	12	2	9	1	14
RFA_00805	RNAIII links to Rfam database...	0.27	0.24	0.30	36	133267	84	12	71	1	114
RFA_00808	RydC links to Rfam database...	0.60	0.50	0.73	8	2005	4	0	3	1	8
RFA_00809	RydC links to Rfam database...	0.37	0.31	0.45	5	2134	7	0	6	1	11
RFA_00814	R2_retro_el links to Rfam database...	0.90	0.85	0.95	35	25163	11	0	2	9	6
RFA_00815	R2_retro_el links to Rfam database...	0.90	0.85	0.95	35	24494	10	0	2	8	6
RFA_00816	R2_retro_el links to Rfam database...	0.90	0.85	0.95	35	23183	8	0	2	6	6
RFA_00817	R2_retro_el links to Rfam database...	0.88	0.83	0.94	34	21909	7	0	2	5	7
RFA_00818	R2_retro_el links to Rfam database...	0.80	0.71	0.91	29	20269	10	0	3	7	12
RFA_00819	R2_retro_el links to Rfam database...	0.90	0.85	0.95	35	27929	13	0	2	11	6
RFA_00820	bicoid_3 links to Rfam database...	0.90	0.88	0.93	140	151374	29	1	10	18	20
RFA_00830	bicoid_3 links to Rfam database...	0.39	0.27	0.59	41	152558	37	3	26	8	113
SPR_00020	tRNA links to Rfam database...	0.00	0.00	0.00	0	2696	5	0	5	0	20
SPR_00023	tRNA links to Rfam database...	0.00	0.00	0.00	0	2846	5	0	4	1	21
SPR_00137	tRNA links to Rfam database...	0.00	0.00	0.00	0	2924	2	0	2	0	21
SPR_00273	tRNA links to Rfam database...	0.00	0.00	0.00	0	2846	4	0	4	0	21
SPR_00277	tRNA links to Rfam database...	0.00	0.00	0.00	0	2923	4	0	3	1	21
SPR_00394	tRNA links to Rfam database...	0.00	0.00	0.00	0	3649	7	0	6	1	21
SPR_00402	tRNA links to Rfam database...	0.00	0.00	0.00	0	2552	4	0	4	0	21
SPR_00721	tRNA links to Rfam database...	0.00	0.00	0.00	0	2923	3	0	3	0	21
SPR_00816	tRNA links to Rfam database...	0.00	0.00	0.00	0	3484	2	0	2	0	20
SPR_01157	tRNA links to Rfam database...	0.00	0.00	0.00	0	2774	1	0	1	0	21
SRP_00001	Bacteria_large_SRP links to Rfam database...	0.63	0.50	0.80	20	6761	5	1	4	0	20
SRP_00002	Metazoa_SRP links to Rfam database...	0.51	0.35	0.75	36	45102	13	0	12	1	66
SRP_00006	Metazoa_SRP links to Rfam database...	0.51	0.36	0.72	36	45703	15	0	14	1	65
SRP_00008	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	2921	5	1	4	0	25
SRP_00009	Plant_SRP links to Rfam database...	0.09	0.06	0.15	6	46626	34	1	32	1	96
SRP_00011	Plant_SRP links to Rfam database...	0.45	0.33	0.63	34	46306	21	1	19	1	70
SRP_00012	Plant_SRP links to Rfam database...	0.11	0.07	0.17	7	46319	35	2	32	1	94
SRP_00015	Plant_SRP links to Rfam database...	0.11	0.07	0.18	7	46320	34	1	32	1	92
SRP_00016	Archaea_SRP links to Rfam database...	0.58	0.41	0.82	45	47840	11	0	10	1	64
SRP_00018	Fungi_SRP links to Rfam database...	0.00	0.00	0.00	0	38497	6	1	5	0	81
SRP_00019	Fungi_SRP links to Rfam database...	0.00	0.00	0.00	0	36042	4	3	1	0	91
SRP_00020	Bacteria_small_SRP links to Rfam database...	0.38	0.24	0.62	8	5552	5	0	5	0	25
SRP_00024	Bacteria_large_SRP links to Rfam database...	0.53	0.45	0.64	39	37614	23	4	18	1	48
SRP_00026	Bacteria_large_SRP links to Rfam database...	0.60	0.55	0.67	48	36784	25	4	20	1	40
SRP_00027	Bacteria_large_SRP links to Rfam database...	0.59	0.53	0.66	46	37058	24	4	20	0	41
SRP_00030	Bacteria_large_SRP links to Rfam database...	0.64	0.58	0.71	51	36784	21	4	17	0	37
SRP_00031	Bacteria_large_SRP links to Rfam database...	0.63	0.57	0.70	51	36242	22	4	18	0	38
SRP_00037	Bacteria_large_SRP links to Rfam database...	0.66	0.60	0.73	52	36514	19	4	15	0	35
SRP_00038	Bacteria_small_SRP links to Rfam database...	0.35	0.21	0.58	7	5038	5	1	4	0	26
SRP_00040	Bacteria_small_SRP links to Rfam database...	0.24	0.16	0.36	5	5551	9	2	7	0	26
SRP_00042	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	3997	8	0	8	0	25
SRP_00043	Bacteria_small_SRP links to Rfam database...	0.53	0.38	0.73	11	5035	5	0	4	1	18
SRP_00044	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6095	11	1	9	1	32
SRP_00046	Bacteria_small_SRP links to Rfam database...	0.33	0.19	0.60	6	4743	4	1	3	0	26
SRP_00050	Metazoa_SRP links to Rfam database...	0.56	0.43	0.72	43	44790	17	0	17	0	56
SRP_00051	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	5448	12	1	11	0	30
SRP_00053	Metazoa_SRP links to Rfam database...	0.17	0.12	0.25	11	45106	33	2	31	0	83
SRP_00054	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	5555	10	1	9	0	32
SRP_00056	Bacteria_small_SRP links to Rfam database...	0.04	0.03	0.07	1	6426	14	3	11	0	36
SRP_00057	Bacteria_small_SRP links to Rfam database...	0.21	0.11	0.40	4	6318	6	0	6	0	31
SRP_00058	Bacteria_small_SRP links to Rfam database...	0.31	0.18	0.55	6	5767	6	0	5	1	28
SRP_00060	Metazoa_SRP links to Rfam database...	0.42	0.28	0.64	28	44507	16	0	16	0	72
SRP_00061	Metazoa_SRP links to Rfam database...	0.44	0.31	0.62	31	44800	19	1	18	0	69
SRP_00066	Metazoa_SRP links to Rfam database...	0.54	0.41	0.72	41	45394	16	0	16	0	59
SRP_00067	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	5768	10	0	10	0	38
SRP_00069	Fungi_SRP links to Rfam database...	0.10	0.04	0.30	3	34443	9	0	7	2	82
SRP_00070	Fungi_SRP links to Rfam database...	0.14	0.05	0.40	6	126741	11	5	4	2	115
SRP_00072	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6320	8	4	4	0	29
SRP_00073	Fungi_SRP links to Rfam database...	0.12	0.04	0.33	3	39051	8	2	4	2	68
SRP_00074	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6548	7	1	6	0	29
SRP_00075	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	5557	9	1	7	1	34
SRP_00077	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6660	10	1	9	0	37
SRP_00079	Plant_SRP links to Rfam database...	0.10	0.06	0.17	5	41875	26	2	23	1	83
SRP_00081	Bacteria_small_SRP links to Rfam database...	0.29	0.19	0.43	6	5551	8	1	7	0	25
SRP_00084	Bacteria_small_SRP links to Rfam database...	0.34	0.21	0.58	7	5448	5	1	4	0	27
SRP_00085	Plant_SRP links to Rfam database...	0.47	0.35	0.65	35	45397	21	2	17	2	66
SRP_00086	Metazoa_SRP links to Rfam database...	0.52	0.40	0.69	40	44195	18	0	18	0	60
SRP_00087	Fungi_SRP links to Rfam database...	0.25	0.10	0.60	6	37391	6	1	3	2	52
SRP_00088	Bacteria_large_SRP links to Rfam database...	0.56	0.47	0.67	42	34128	21	4	17	0	47
SRP_00089	Bacteria_large_SRP links to Rfam database...	0.61	0.50	0.74	45	35717	16	3	13	0	45
SRP_00090	Bacteria_large_SRP links to Rfam database...	0.65	0.58	0.73	52	35440	20	3	16	1	38
SRP_00091	Fungi_SRP links to Rfam database...	0.09	0.02	0.40	2	52970	5	0	3	2	93
SRP_00094	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	4089	6	1	5	0	24
SRP_00095	Bacteria_small_SRP links to Rfam database...	0.57	0.44	0.73	11	3990	4	3	1	0	14
SRP_00098	Bacteria_small_SRP links to Rfam database...	0.04	0.03	0.08	1	6429	11	0	11	0	36
SRP_00099	Plant_SRP links to Rfam database...	0.08	0.04	0.14	4	44821	26	1	24	1	91
SRP_00102	Metazoa_SRP links to Rfam database...	0.57	0.42	0.78	42	44497	12	0	12	0	59
SRP_00103	Metazoa_SRP links to Rfam database...	0.56	0.42	0.74	43	45393	15	0	15	0	59
SRP_00104	Fungi_SRP links to Rfam database...	0.09	0.04	0.20	3	34438	14	0	12	2	66
SRP_00105	Bacteria_small_SRP links to Rfam database...	0.34	0.21	0.58	7	5553	5	1	4	0	27
SRP_00106	Bacteria_large_SRP links to Rfam database...	0.61	0.60	0.63	15	5229	10	2	7	1	10
SRP_00107	Bacteria_small_SRP links to Rfam database...	0.43	0.32	0.60	6	3645	4	0	4	0	13
SRP_00117	Metazoa_SRP links to Rfam database...	0.57	0.39	0.83	40	45403	9	0	8	1	62
SRP_00121	Bacteria_small_SRP links to Rfam database...	0.60	0.36	1.00	9	4269	0	0	0	0	16
SRP_00123	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	36569	16	1	15	0	91
SRP_00124	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	37109	20	2	17	1	85
SRP_00127	Fungi_SRP links to Rfam database...	0.07	0.02	0.29	2	72383	7	0	5	2	117
SRP_00128	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6778	8	2	6	0	36
SRP_00130	Archaea_SRP links to Rfam database...	0.43	0.31	0.60	30	49720	22	2	18	2	67
SRP_00132	Bacteria_small_SRP links to Rfam database...	0.32	0.21	0.50	6	4839	6	2	4	0	23
SRP_00134	Bacteria_large_SRP links to Rfam database...	0.65	0.66	0.66	19	5966	11	0	10	1	10
SRP_00136	Fungi_SRP links to Rfam database...	0.10	0.04	0.25	3	44241	11	1	8	2	68
SRP_00137	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	4178	8	1	7	0	25
SRP_00141	Bacteria_small_SRP links to Rfam database...	0.26	0.15	0.46	6	6315	7	0	7	0	35
SRP_00142	Archaea_SRP links to Rfam database...	0.55	0.42	0.74	39	46003	17	0	14	3	54
SRP_00143	Archaea_SRP links to Rfam database...	0.56	0.45	0.70	45	49706	20	0	19	1	56
SRP_00144	Archaea_SRP links to Rfam database...	0.55	0.43	0.70	40	46608	20	1	16	3	54
SRP_00145	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6315	13	0	13	0	40
SRP_00146	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	5246	7	1	6	0	36
SRP_00148	Fungi_SRP links to Rfam database...	0.09	0.02	0.33	2	50080	6	1	3	2	85
SRP_00152	Plant_SRP links to Rfam database...	0.58	0.39	0.87	40	45707	7	0	6	1	63
SRP_00153	Plant_SRP links to Rfam database...	0.52	0.36	0.74	39	46918	16	0	14	2	68
SRP_00157	Fungi_SRP links to Rfam database...	0.10	0.04	0.25	3	44241	11	2	7	2	69
SRP_00158	Fungi_SRP links to Rfam database...	0.13	0.02	1.00	2	124249	1	0	0	1	113
SRP_00160	Fungi_SRP links to Rfam database...	0.08	0.02	0.25	3	86308	9	3	6	0	127
SRP_00161	Bacteria_small_SRP links to Rfam database...	0.41	0.32	0.54	7	2837	6	0	6	0	15
SRP_00162	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	2921	5	4	1	0	23
SRP_00163	Bacteria_small_SRP links to Rfam database...	0.43	0.27	0.70	7	3476	3	0	3	0	19
SRP_00164	Bacteria_small_SRP links to Rfam database...	0.72	0.60	0.88	21	6879	4	1	2	1	14
SRP_00170	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	4091	4	0	4	0	25
SRP_00171	Metazoa_SRP links to Rfam database...	0.53	0.40	0.70	35	45401	15	0	15	0	53
SRP_00173	Bacteria_large_SRP links to Rfam database...	0.53	0.44	0.63	40	38163	25	4	19	2	50
SRP_00174	Bacteria_large_SRP links to Rfam database...	0.44	0.31	0.63	27	38738	16	0	16	0	59
SRP_00175	Fungi_SRP links to Rfam database...	0.12	0.04	0.38	3	44543	7	2	3	2	81
SRP_00178	Plant_SRP links to Rfam database...	0.51	0.36	0.71	37	45701	16	0	15	1	65
SRP_00179	Plant_SRP links to Rfam database...	0.50	0.35	0.73	37	46005	15	0	14	1	68
SRP_00181	Plant_SRP links to Rfam database...	0.52	0.35	0.77	36	46009	12	0	11	1	66
SRP_00182	Plant_SRP links to Rfam database...	0.57	0.41	0.79	41	46004	12	1	10	1	60
SRP_00184	Plant_SRP links to Rfam database...	0.51	0.36	0.73	36	46007	14	0	13	1	64
SRP_00188	Plant_SRP links to Rfam database...	0.65	0.52	0.82	41	31075	10	0	9	1	38
SRP_00194	Bacteria_small_SRP links to Rfam database...	0.16	0.10	0.29	2	3233	5	2	3	0	19
SRP_00197	Archaea_SRP links to Rfam database...	0.51	0.37	0.73	37	49404	15	3	11	1	64
SRP_00198	Archaea_SRP links to Rfam database...	0.52	0.39	0.70	40	50983	20	2	15	3	63
SRP_00199	Archaea_SRP links to Rfam database...	0.48	0.37	0.63	39	50978	24	0	23	1	66
SRP_00200	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6888	15	1	14	0	36
SRP_00201	Archaea_SRP links to Rfam database...	0.51	0.39	0.68	43	47832	21	0	20	1	68
SRP_00202	Archaea_SRP links to Rfam database...	0.46	0.36	0.58	42	54213	31	2	28	1	75
SRP_00203	Archaea_SRP links to Rfam database...	0.41	0.31	0.54	33	48767	30	1	27	2	72
SRP_00204	Archaea_SRP links to Rfam database...	0.56	0.42	0.74	43	49083	17	1	14	2	59
SRP_00206	Archaea_SRP links to Rfam database...	0.55	0.41	0.73	44	47835	17	0	16	1	64
SRP_00208	Archaea_SRP links to Rfam database...	0.44	0.32	0.60	32	46612	21	2	19	0	69
SRP_00209	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	4649	7	1	6	0	27
SRP_00213	Bacteria_small_SRP links to Rfam database...	0.39	0.28	0.54	7	4173	6	1	5	0	18
SRP_00215	Bacteria_small_SRP links to Rfam database...	0.44	0.28	0.70	7	3230	3	1	2	0	18
SRP_00216	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	3396	7	1	6	0	27
SRP_00217	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	3312	9	1	8	0	24
SRP_00219	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	3315	6	1	5	0	23
SRP_00222	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	3074	7	1	6	0	25
SRP_00227	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	5143	8	0	8	0	31
SRP_00228	Metazoa_SRP links to Rfam database...	0.56	0.42	0.75	40	45398	14	1	12	1	55
SRP_00229	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	5246	7	2	5	0	27
SRP_00230	Fungi_SRP links to Rfam database...	0.08	0.03	0.18	3	39604	16	0	14	2	87
SRP_00231	Bacteria_small_SRP links to Rfam database...	0.46	0.29	0.71	10	5446	4	0	4	0	24
SRP_00233	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	5141	10	1	9	0	33
SRP_00234	Bacteria_large_SRP links to Rfam database...	0.59	0.53	0.66	46	36245	27	5	19	3	40
SRP_00239	Plant_SRP links to Rfam database...	0.39	0.31	0.50	29	50345	30	2	27	1	64
SRP_00240	Plant_SRP links to Rfam database...	0.47	0.37	0.60	38	48142	27	2	23	2	64
SRP_00241	Plant_SRP links to Rfam database...	0.00	0.00	0.00	0	46025	31	2	29	0	82
SRP_00243	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	5140	11	1	10	0	31
SRP_00244	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6891	12	1	11	0	39
SRP_00247	Metazoa_SRP links to Rfam database...	0.50	0.38	0.67	33	47229	19	2	14	3	54
SRP_00250	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6775	11	2	9	0	36
SRP_00251	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	7011	10	1	9	0	36
SRP_00252	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	49113	28	3	25	0	89
SRP_00253	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	49433	22	4	18	0	90
SRP_00254	Fungi_SRP links to Rfam database...	0.00	0.00	0.00	0	32382	3	3	0	0	61
SRP_00255	Archaea_SRP links to Rfam database...	0.52	0.38	0.71	36	47535	17	2	13	2	58
SRP_00257	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	51009	31	2	29	0	108
SRP_00260	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	47877	18	1	17	0	100
SRP_00265	Fungi_SRP links to Rfam database...	0.00	0.00	0.00	0	41319	9	1	8	0	73
SRP_00266	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	4647	9	1	8	0	29
SRP_00267	Metazoa_SRP links to Rfam database...	0.17	0.11	0.26	11	44509	32	0	31	1	85
SRP_00268	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	4180	6	1	5	0	27
SRP_00269	Bacteria_small_SRP links to Rfam database...	0.29	0.18	0.46	6	5037	7	0	7	0	27
SRP_00270	Bacteria_small_SRP links to Rfam database...	0.28	0.16	0.50	5	4646	5	0	5	0	26
SRP_00271	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	3235	5	0	5	0	24
SRP_00273	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6778	8	1	7	0	40
SRP_00274	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6892	11	1	10	0	38
SRP_00276	Archaea_SRP links to Rfam database...	0.62	0.48	0.79	53	50654	15	1	13	1	57
SRP_00278	Archaea_SRP links to Rfam database...	0.48	0.35	0.65	37	45999	21	1	19	1	68
SRP_00282	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	43345	20	3	17	0	63
SRP_00285	Bacteria_small_SRP links to Rfam database...	0.33	0.20	0.55	6	3730	5	0	5	0	24
SRP_00286	Fungi_SRP links to Rfam database...	0.07	0.02	0.21	4	137007	18	0	15	3	170
SRP_00287	Fungi_SRP links to Rfam database...	0.07	0.02	0.25	3	141766	11	1	8	2	159
SRP_00290	Fungi_SRP links to Rfam database...	0.00	0.00	0.00	0	100557	19	1	18	0	135
SRP_00292	Fungi_SRP links to Rfam database...	0.05	0.02	0.14	3	137529	20	1	17	2	170
SRP_00294	Fungi_SRP links to Rfam database...	0.05	0.02	0.13	3	129263	24	1	19	4	164
SRP_00295	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6894	9	1	8	0	38
SRP_00299	Metazoa_SRP links to Rfam database...	0.48	0.34	0.67	34	44202	17	0	17	0	65
SRP_00300	Metazoa_SRP links to Rfam database...	0.46	0.35	0.61	33	44199	21	0	21	0	61
SRP_00301	Fungi_SRP links to Rfam database...	0.10	0.02	0.40	2	32635	5	0	3	2	84
SRP_00302	Fungi_SRP links to Rfam database...	0.10	0.04	0.25	3	41604	11	3	6	2	78
SRP_00303	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6665	5	1	4	0	32
SRP_00308	Bacteria_large_SRP links to Rfam database...	0.62	0.55	0.72	48	36248	19	4	15	0	40
SRP_00310	Bacteria_small_SRP links to Rfam database...	0.60	0.43	0.83	10	2914	3	0	2	1	13
SRP_00312	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	4178	8	0	8	0	27
SRP_00315	Bacteria_small_SRP links to Rfam database...	0.63	0.43	0.91	10	2915	1	0	1	0	13
SRP_00317	Metazoa_SRP links to Rfam database...	0.47	0.36	0.63	35	45094	21	0	21	0	63
SRP_00318	Bacteria_small_SRP links to Rfam database...	0.69	0.48	1.00	11	2992	0	0	0	0	12
SRP_00321	Archaea_SRP links to Rfam database...	0.37	0.25	0.56	27	47538	22	1	20	1	81
SRP_00322	Archaea_SRP links to Rfam database...	0.47	0.34	0.66	37	48460	20	2	17	1	72
SRP_00323	Archaea_SRP links to Rfam database...	0.53	0.36	0.76	39	47227	13	0	12	1	68
SRP_00324	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	5344	12	2	10	0	29
SRP_00325	Bacteria_small_SRP links to Rfam database...	0.36	0.21	0.64	7	4360	4	0	4	0	26
SRP_00326	Bacteria_small_SRP links to Rfam database...	0.30	0.16	0.56	5	5041	4	0	4	0	26
SRP_00328	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	39594	27	2	25	0	85
SRP_00329	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	39885	18	1	17	0	85
SRP_00330	Archaea_SRP links to Rfam database...	0.38	0.25	0.57	24	50044	20	1	17	2	71
SRP_00331	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	37656	19	2	17	0	87
SRP_00332	Archaea_SRP links to Rfam database...	0.70	0.58	0.86	61	50332	11	0	10	1	45
SRP_00333	Bacteria_small_SRP links to Rfam database...	0.33	0.21	0.54	7	5138	6	0	6	0	27
SRP_00335	Bacteria_large_SRP links to Rfam database...	0.42	0.41	0.43	16	35208	34	11	10	13	23
SRP_00337	Bacteria_large_SRP links to Rfam database...	0.58	0.49	0.68	45	35445	21	4	17	0	46
SRP_00338	Bacteria_small_SRP links to Rfam database...	0.51	0.33	0.80	12	5445	4	0	3	1	24
SRP_00339	Archaea_SRP links to Rfam database...	0.36	0.26	0.50	24	44503	25	1	23	1	70
SRP_00340	Metazoa_SRP links to Rfam database...	0.21	0.13	0.34	11	41296	23	1	20	2	71
SRP_00341	Bacteria_small_SRP links to Rfam database...	0.35	0.23	0.54	7	4740	6	1	5	0	24
SRP_00342	Bacteria_small_SRP links to Rfam database...	0.38	0.24	0.60	6	3995	4	0	4	0	19
SRP_00347	Metazoa_SRP links to Rfam database...	0.40	0.28	0.57	27	46618	21	1	19	1	69
SRP_00350	Bacteria_small_SRP links to Rfam database...	0.19	0.07	0.50	2	3912	2	0	2	0	25
SRP_00356	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	5043	7	1	6	0	30
SRP_00357	Bacteria_small_SRP links to Rfam database...	0.46	0.31	0.69	11	5340	5	0	5	0	25
SRP_00358	Bacteria_small_SRP links to Rfam database...	0.49	0.29	0.83	10	6316	2	1	1	0	25
SRP_00361	Plant_SRP links to Rfam database...	0.09	0.04	0.19	4	41884	18	1	16	1	86
SRP_00363	Bacteria_small_SRP links to Rfam database...	0.52	0.37	0.73	11	4738	4	0	4	0	19
SRP_00365	Bacteria_small_SRP links to Rfam database...	0.45	0.26	0.78	7	3394	2	0	2	0	20
SRP_00367	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6774	12	0	12	0	35
SRP_00368	Metazoa_SRP links to Rfam database...	0.57	0.45	0.73	44	43896	16	0	16	0	54
SRP_00369	Bacteria_small_SRP links to Rfam database...	0.30	0.17	0.55	6	5767	5	0	5	0	29
SRP_00371	Fungi_SRP links to Rfam database...	0.00	0.00	0.00	0	36310	5	0	5	0	82
SRP_00382	Fungi_SRP links to Rfam database...	0.06	0.02	0.18	3	141761	16	0	14	2	167
SRP_00383	Bacteria_small_SRP links to Rfam database...	0.54	0.42	0.71	10	3226	4	0	4	0	14
TMR_00173	tmRNA links to Rfam database...	0.30	0.17	0.54	7	42182	6	2	4	0	35
TMR_00357	tmRNA links to Rfam database...	0.25	0.09	0.73	8	83017	3	0	3	0	84
TMR_00601	tmRNA links to Rfam database...	0.30	0.19	0.47	8	58979	9	2	7	0	34
TMR_00696	tmRNA links to Rfam database...	0.24	0.07	0.80	8	85068	2	0	2	0	106

^top

Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.

Table of contents:

Overview

Performance plots

Performance of RNAwolf - scored higher in this pairwise comparison

1. Total counts & total scores for RNAwolf

2. Individual counts for RNAwolf [ download as .csv ]

Performance of RSpredict(seed) - scored lower in this pairwise comparison

1. Total counts & total scores for RSpredict(seed)

2. Individual counts for RSpredict(seed) [ download as .csv ]