CompaRNA - on-line benchmarks of RNA structure prediction methods

Laboratory of Structural Bioinformatics @ Adam Mickiewicz University in Poznan

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Overview

Metric	Sfold		NanoFolder
MCC	0.583	>	0.194
Average MCC ± 95% Confidence Intervals	0.598 ± 0.032	>	0.270 ± 0.031
Sensitivity	0.531	>	0.229
Positive Predictive Value	0.641	>	0.168
Total TP	8585	>	3704
Total TN	8598086	>	8589367
Total FP	5624	<	19087
Total FP CONTRA	801	<	3388
Total FP INCONS	3999	<	15012
Total FP COMP	824	>	687
Total FN	7578	<	12459
P-value	3.56938820447e-08

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Performance plots

Comparison of performance of Sfold and NanoFolder. Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data (individual counts for Sfold and NanoFolder).
Average Matthews Correlation Coefficients (MCC) with 95% confidence intervals (CIs) were plotted for different RNA families, for which at least 3 members were present in the benchmarking dataset. 'n' denotes the number of MCCs used to calculate the average and CI. See tables below for raw data (individual counts for Sfold and NanoFolder).
Comparison of average Matthews Correlation Coefficients (MCCs) for Sfold and NanoFolder. The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data (individual counts for Sfold and NanoFolder).

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Performance of Sfold - scored higher in this pairwise comparison

1. Total counts & total scores for Sfold

Total Base Pair Counts
Total TP	8585
Total TN	8598086
Total FP	5624
Total FP CONTRA	801
Total FP INCONS	3999
Total FP COMP	824
Total FN	7578

Total Scores
MCC	0.583
Average MCC ± 95% Confidence Intervals	0.598 ± 0.032
Sensitivity	0.531
Positive Predictive Value	0.641
Nr of predictions	251

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2. Individual counts for Sfold [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00017	RNaseP_nuc links to Rfam database...	0.27	0.25	0.29	16	50984	48	3	37	8	48
ASE_00083	RNaseP_bact_a links to Rfam database...	0.81	0.75	0.87	83	62386	17	0	12	5	27
ASE_00122	RNaseP_bact_a links to Rfam database...	0.35	0.28	0.42	25	43306	34	0	34	0	63
ASE_00185	RNaseP_bact_a links to Rfam database...	0.77	0.70	0.86	89	73432	21	3	12	6	39
ASE_00190	RNaseP_bact_b links to Rfam database...	0.65	0.46	0.93	41	45407	5	0	3	2	49
ASE_00191	RNaseP_arch links to Rfam database...	0.74	0.64	0.85	39	29600	11	0	7	4	22
ASE_00196	RNaseP_arch links to Rfam database...	0.79	0.77	0.81	58	31554	17	2	12	3	17
ASE_00221	RNaseP_bact_a links to Rfam database...	0.57	0.44	0.73	52	64549	22	1	18	3	65
ASE_00227	RNaseP_bact_a links to Rfam database...	0.33	0.30	0.35	40	78890	73	6	67	0	93
ASE_00228	RNaseP_bact_a links to Rfam database...	0.69	0.62	0.78	53	46903	15	11	4	0	33
ASE_00229	RNaseP_bact_a links to Rfam database...	0.63	0.60	0.66	52	42407	28	8	19	1	35
ASE_00231	RNaseP_bact_a links to Rfam database...	0.64	0.64	0.66	61	47802	33	5	27	1	35
ASE_00234	RNaseP_bact_a links to Rfam database...	0.56	0.45	0.69	58	75382	30	1	25	4	71
ASE_00238	RNaseP_bact_a links to Rfam database...	0.49	0.47	0.51	54	64155	56	1	51	4	60
ASE_00248	RNaseP_bact_a links to Rfam database...	0.62	0.54	0.70	62	62393	30	1	25	4	52
ASE_00250	RNaseP_bact_a links to Rfam database...	0.63	0.55	0.73	72	78905	31	7	19	5	59
ASE_00254	RNaseP_bact_a links to Rfam database...	0.80	0.66	0.98	54	36801	1	0	1	0	28
ASE_00255	RNaseP_bact_a links to Rfam database...	0.72	0.66	0.78	86	74581	25	3	21	1	44
ASE_00257	RNaseP_bact_a links to Rfam database...	0.71	0.56	0.90	54	50980	6	0	6	0	43
ASE_00267	RNaseP_bact_a links to Rfam database...	0.54	0.35	0.84	31	45113	10	0	6	4	57
ASE_00270	RNaseP_bact_a links to Rfam database...	0.68	0.66	0.69	85	72267	40	6	32	2	43
ASE_00274	RNaseP_bact_a links to Rfam database...	0.51	0.48	0.54	49	55521	41	8	33	0	54
ASE_00277	RNaseP_bact_a links to Rfam database...	0.46	0.44	0.48	40	48121	44	8	36	0	51
ASE_00279	RNaseP_bact_a links to Rfam database...	0.71	0.53	0.95	54	53244	4	0	3	1	47
ASE_00285	RNaseP_bact_a links to Rfam database...	0.72	0.67	0.77	82	68900	32	0	24	8	40
ASE_00287	RNaseP_bact_a links to Rfam database...	0.73	0.68	0.78	70	54856	26	2	18	6	33
ASE_00294	RNaseP_bact_a links to Rfam database...	0.80	0.72	0.89	123	114343	17	2	13	2	48
ASE_00295	RNaseP_bact_a links to Rfam database...	0.56	0.50	0.63	65	73817	40	4	34	2	66
ASE_00298	RNaseP_bact_a links to Rfam database...	0.61	0.52	0.70	59	67444	27	4	21	2	54
ASE_00318	RNaseP_bact_b links to Rfam database...	0.64	0.56	0.74	66	80111	27	7	16	4	52
ASE_00321	RNaseP_bact_b links to Rfam database...	0.62	0.39	1.00	34	54581	0	0	0	0	54
ASE_00335	RNaseP_bact_b links to Rfam database...	0.55	0.45	0.68	52	75390	30	3	21	6	64
ASE_00339	RNaseP_bact_a links to Rfam database...	0.50	0.47	0.52	56	80093	63	3	48	12	63
ASE_00340	RNaseP_bact_a links to Rfam database...	0.75	0.73	0.77	62	45975	25	6	13	6	23
ASE_00343	RNaseP_bact_a links to Rfam database...	0.49	0.44	0.55	50	83345	56	5	36	15	63
ASE_00344	-	0.81	0.82	0.81	46	27204	26	4	7	15	10
ASE_00350	-	0.93	0.88	0.98	46	29599	23	0	1	22	6
ASE_00367	RNaseP_bact_a links to Rfam database...	0.43	0.38	0.49	33	43004	34	4	30	0	53
ASE_00370	RNaseP_bact_a links to Rfam database...	0.68	0.63	0.74	53	41833	20	1	18	1	31
ASE_00372	RNaseP_bact_a links to Rfam database...	0.73	0.69	0.77	69	51913	26	4	17	5	31
ASE_00375	RNaseP_bact_a links to Rfam database...	0.71	0.54	0.95	59	60316	5	0	3	2	51
ASE_00376	RNaseP_bact_a links to Rfam database...	0.57	0.54	0.60	57	56858	43	3	35	5	48
ASE_00377	RNaseP_bact_a links to Rfam database...	0.70	0.67	0.73	72	57531	33	4	23	6	35
ASE_00386	RNaseP_bact_a links to Rfam database...	0.57	0.53	0.61	51	50319	38	3	30	5	45
ASE_00393	RNaseP_bact_a links to Rfam database...	0.50	0.41	0.60	38	47832	32	1	24	7	55
ASE_00412	RNaseP_bact_a links to Rfam database...	0.56	0.50	0.62	53	58225	33	8	25	0	52
ASE_00413	RNaseP_bact_a links to Rfam database...	0.43	0.42	0.44	34	44474	43	13	30	0	47
ASE_00416	RNaseP_bact_a links to Rfam database...	0.70	0.67	0.73	85	77305	35	3	28	4	42
ASE_00417	RNaseP_arch links to Rfam database...	0.41	0.41	0.41	41	54516	61	7	51	3	59
ASE_00422	RNaseP_bact_a links to Rfam database...	0.69	0.63	0.77	59	46894	25	0	18	7	35
ASE_00427	RNaseP_nuc links to Rfam database...	0.14	0.13	0.16	6	40718	39	8	23	8	40
ASE_00428	RNaseP_bact_a links to Rfam database...	0.61	0.40	0.94	50	76583	4	0	3	1	75
ASE_00429	-	0.66	0.56	0.79	37	28156	10	3	7	0	29
ASE_00430	RNaseP_bact_a links to Rfam database...	0.65	0.62	0.67	60	46882	35	5	24	6	37
ASE_00434	RNaseP_bact_b links to Rfam database...	0.60	0.55	0.64	61	68170	42	5	29	8	49
ASE_00437	RNaseP_bact_a links to Rfam database...	0.40	0.39	0.42	52	79277	73	5	67	1	83
ASE_00451	RNaseP_bact_a links to Rfam database...	0.62	0.52	0.73	65	70787	24	2	22	0	60
ASE_00454	RNaseP_nuc links to Rfam database...	0.55	0.52	0.59	33	43309	49	1	22	26	30
CRW_00648	-	0.61	0.56	0.67	83	137952	40	10	30	0	65
CRW_00654	-	0.86	0.81	0.92	101	78100	12	1	8	3	23
CRW_00658	-	0.49	0.48	0.50	49	74593	49	20	29	0	53
CRW_00663	-	0.00	0.00	0.00	0	26078	28	3	25	0	61
CRW_00664	-	0.16	0.10	0.25	8	53596	24	5	19	0	70
CRW_00671	Intron_gpI links to Rfam database...	0.75	0.70	0.81	82	62734	23	5	14	4	35
CRW_00672	Intron_gpI links to Rfam database...	0.78	0.71	0.85	79	72297	20	6	8	6	32
CRW_00674	Intron_gpI links to Rfam database...	0.60	0.54	0.66	67	83335	36	6	28	2	57
CRW_00676	Intron_gpI links to Rfam database...	0.61	0.57	0.66	65	93430	48	9	24	15	50
CRW_00685	-	0.58	0.54	0.63	57	156989	62	9	25	28	49
CRW_00688	-	0.85	0.75	0.96	43	21900	3	1	1	1	14
CRW_00721	-	0.57	0.60	0.54	41	58577	45	14	21	10	27
CRW_00756	-	0.49	0.49	0.49	85	194827	99	13	75	11	87
CRW_01535	5S_rRNA links to Rfam database...	0.84	0.78	0.91	29	7108	7	0	3	4	8
CRW_01539	5S_rRNA links to Rfam database...	0.83	0.76	0.90	28	7109	9	0	3	6	9
CRW_01563	5S_rRNA links to Rfam database...	0.65	0.51	0.83	19	6880	5	1	3	1	18
CRW_01583	5S_rRNA links to Rfam database...	0.80	0.76	0.85	28	7107	8	0	5	3	9
CRW_01590	5S_rRNA links to Rfam database...	0.66	0.43	1.00	16	7124	0	0	0	0	21
CRW_01593	5S_rRNA links to Rfam database...	0.82	0.78	0.85	29	7106	10	0	5	5	8
CRW_01595	5S_rRNA links to Rfam database...	0.77	0.73	0.82	27	8482	9	0	6	3	10
CRW_01603	5S_rRNA links to Rfam database...	0.84	0.78	0.91	29	7108	6	0	3	3	8
CRW_01617	5S_rRNA links to Rfam database...	0.92	0.89	0.94	33	7105	6	0	2	4	4
CRW_01625	5S_rRNA links to Rfam database...	0.82	0.81	0.83	30	7104	9	0	6	3	7
PDB_00011	-	0.91	0.83	1.00	10	266	0	0	0	0	2
PDB_00017	-	0.77	0.60	1.00	9	694	0	0	0	0	6
PDB_00036	-	-0.01	0.00	0.00	0	3464	24	1	21	2	27
PDB_00070	tRNA links to Rfam database...	0.68	0.67	0.70	16	2827	7	1	6	0	8
PDB_00078	-	0.72	0.65	0.79	75	49675	20	6	14	0	40
PDB_00113	-	0.94	0.89	1.00	8	223	0	0	0	0	1
PDB_00119	-	0.95	0.90	1.00	9	244	0	0	0	0	1
PDB_00136	-	0.76	0.73	0.79	19	2391	5	0	5	0	7
PDB_00137	-	0.87	0.77	1.00	10	396	0	0	0	0	3
PDB_00160	-	0.94	0.89	1.00	8	268	0	0	0	0	1
PDB_00178	-	0.90	0.82	1.00	9	519	1	0	0	1	2
PDB_00221	-	0.88	0.78	1.00	7	246	0	0	0	0	2
PDB_00278	-	0.07	0.07	0.08	5	24910	61	4	57	0	67
PDB_00312	-	0.46	0.44	0.50	4	427	4	0	4	0	5
PDB_00326	-	0.80	0.64	1.00	18	3723	0	0	0	0	10
PDB_00341	-	0.26	0.25	0.31	4	690	9	0	9	0	12
PDB_00349	-	-0.01	0.00	0.00	0	932	14	0	14	0	14
PDB_00417	-	0.10	0.11	0.11	6	14140	50	6	44	0	50
PDB_00430	tRNA links to Rfam database...	0.72	0.72	0.72	18	3215	7	3	4	0	7
PDB_00527	-	-0.02	0.00	0.00	0	294	6	1	5	0	5
PDB_00565	-	0.79	0.70	0.90	35	8089	5	0	4	1	15
PDB_00570	-	-0.01	0.00	0.00	0	2269	9	0	9	0	22
PDB_00571	tRNA links to Rfam database...	0.21	0.20	0.24	5	3300	16	6	10	0	20
PDB_00573	-	0.75	0.71	0.80	24	6640	10	0	6	4	10
PDB_00584	-	0.42	0.18	1.00	3	1482	0	0	0	0	14
PDB_00698	-	0.94	0.89	1.00	17	844	0	0	0	0	2
PDB_00701	-	0.45	0.42	0.48	46	45356	50	5	44	1	63
PDB_00725	-	0.93	0.87	1.00	13	582	0	0	0	0	2
PDB_00734	-	0.83	0.70	1.00	7	224	0	0	0	0	3
PDB_00823	-	-0.03	0.00	0.00	0	186	4	0	4	0	9
PDB_00828	Purine links to Rfam database...	0.88	0.78	1.00	21	2464	0	0	0	0	6
PDB_00851	-	0.45	0.39	0.53	16	4723	14	0	14	0	25
PDB_00890	-	0.92	0.86	1.00	12	691	0	0	0	0	2
PDB_00917	-	0.52	0.48	0.55	46	35162	43	3	34	6	49
PDB_00923	-	1.00	1.00	1.00	6	184	0	0	0	0	0
PDB_00994	-	0.00	0.00	0.00	0	10534	51	12	39	0	42
PDB_01009	tRNA links to Rfam database...	0.46	0.52	0.41	11	2458	16	5	11	0	10
PDB_01051	Telomerase-cil links to Rfam database...	0.88	0.85	0.92	11	891	5	0	1	4	2
PDB_01074	-	-0.01	0.00	0.00	0	2746	29	3	26	0	25
PDB_01076	-	0.81	0.71	0.93	56	23376	11	0	4	7	23
PDB_01130	-	-0.01	0.00	0.00	0	1748	22	6	16	0	20
PDB_01193	-	0.44	0.42	0.46	63	105894	82	14	59	9	88
PDB_01199	-	-0.01	0.00	0.00	0	2132	13	0	13	0	24
PDB_01236	ykoK links to Rfam database...	0.62	0.57	0.67	31	11582	18	0	15	3	23
PDB_01275	-	0.27	0.24	0.31	17	18281	39	2	36	1	54
RFA_00416	Hammerhead_3 links to Rfam database...	0.93	0.93	0.93	14	1470	4	0	1	3	1
RFA_00434	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00436	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00442	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00446	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1471	2	0	0	2	1
RFA_00604	Telomerase-cil links to Rfam database...	0.71	0.74	0.68	26	13492	24	2	10	12	9
RFA_00620	Telomerase-cil links to Rfam database...	0.55	0.49	0.63	19	21915	22	3	8	11	20
RFA_00664	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	980	11	0	10	1	14
RFA_00674	Hammerhead_1 links to Rfam database...	0.66	0.64	0.69	9	1115	5	0	4	1	5
RFA_00675	Hammerhead_1 links to Rfam database...	0.29	0.29	0.31	4	977	9	1	8	0	10
RFA_00677	Hammerhead_1 links to Rfam database...	0.59	0.57	0.62	8	977	6	0	5	1	6
RFA_00684	Hammerhead_1 links to Rfam database...	0.59	0.57	0.62	8	977	6	0	5	1	6
RFA_00703	Hammerhead_1 links to Rfam database...	0.67	0.64	0.69	9	4265	16	1	3	12	5
RFA_00716	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	935	11	0	11	0	14
RFA_00717	Hammerhead_1 links to Rfam database...	0.72	0.64	0.82	9	892	2	0	2	0	5
RFA_00730	s2m links to Rfam database...	0.69	0.67	0.73	8	892	4	1	2	1	4
RFA_00763	s2m links to Rfam database...	0.91	0.83	1.00	10	893	0	0	0	0	2
RFA_00765	s2m links to Rfam database...	1.00	1.00	1.00	12	891	1	0	0	1	0
RFA_00770	Corona_pk3 links to Rfam database...	0.68	0.56	0.83	10	2004	5	0	2	3	8
RFA_00773	Corona_pk3 links to Rfam database...	0.57	0.56	0.59	10	1936	7	1	6	0	8
RFA_00808	RydC links to Rfam database...	-0.01	0.00	0.00	0	2000	19	2	14	3	16
RFA_00816	R2_retro_el links to Rfam database...	0.76	0.73	0.79	30	23182	12	8	0	4	11
SPR_00030	-	0.32	0.24	0.45	5	2474	7	0	6	1	16
SPR_00066	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00228	tRNA links to Rfam database...	0.58	0.50	0.67	10	3813	6	2	3	1	10
SPR_00314	tRNA links to Rfam database...	0.71	0.76	0.67	16	2902	11	0	8	3	5
SPR_00331	tRNA links to Rfam database...	0.46	0.50	0.43	10	2752	13	5	8	0	10
SPR_00333	tRNA links to Rfam database...	0.45	0.48	0.43	10	2752	13	5	8	0	11
SPR_00353	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	1	0	0	1	0
SPR_00398	-	-0.01	0.00	0.00	0	2194	19	2	15	2	13
SPR_00452	tRNA links to Rfam database...	0.53	0.57	0.50	12	2826	12	2	10	0	9
SPR_00456	tRNA links to Rfam database...	0.54	0.57	0.52	12	2827	12	2	9	1	9
SPR_00462	tRNA links to Rfam database...	0.70	0.68	0.72	13	2397	6	3	2	1	6
SPR_00476	tRNA links to Rfam database...	0.46	0.52	0.41	11	2748	17	3	13	1	10
SPR_00496	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	0	0	0	0	0
SPR_00497	tRNA links to Rfam database...	0.46	0.52	0.41	11	2748	17	3	13	1	10
SPR_00502	tRNA links to Rfam database...	0.70	0.57	0.86	12	2912	2	0	2	0	9
SPR_00509	tRNA links to Rfam database...	0.74	0.55	1.00	11	2915	0	0	0	0	9
SPR_00512	tRNA links to Rfam database...	0.97	0.95	1.00	19	2907	0	0	0	0	1
SPR_00542	tRNA links to Rfam database...	0.31	0.33	0.30	7	3547	16	2	14	0	14
SPR_00557	tRNA links to Rfam database...	0.40	0.43	0.39	9	2827	15	1	13	1	12
SPR_00832	-	0.82	0.67	1.00	10	1643	0	0	0	0	5
SPR_00868	tRNA links to Rfam database...	0.58	0.57	0.60	12	2906	9	0	8	1	9
SPR_00932	tRNA links to Rfam database...	0.25	0.24	0.28	5	2832	14	2	11	1	16
SPR_00957	tRNA links to Rfam database...	0.78	0.76	0.80	16	2983	5	0	4	1	5
SPR_01040	tRNA links to Rfam database...	0.83	0.81	0.85	17	2755	4	0	3	1	4
SPR_01143	tRNA links to Rfam database...	0.35	0.33	0.37	7	2537	12	3	9	0	14
SRP_00005	-	0.82	0.83	0.80	20	3980	6	0	5	1	4
SRP_00038	Bacteria_small_SRP links to Rfam database...	0.48	0.39	0.59	13	5028	9	0	9	0	20
SRP_00046	Bacteria_small_SRP links to Rfam database...	0.62	0.56	0.69	18	4727	9	0	8	1	14
SRP_00103	Metazoa_SRP links to Rfam database...	0.91	0.86	0.97	88	45360	3	0	3	0	14
SRP_00117	Metazoa_SRP links to Rfam database...	0.84	0.74	0.95	75	45372	6	0	4	2	27
SRP_00138	-	1.00	1.00	1.00	27	3978	6	0	0	6	0
SRP_00144	Archaea_SRP links to Rfam database...	0.74	0.73	0.75	69	46573	27	1	22	4	25
SRP_00170	Bacteria_small_SRP links to Rfam database...	0.50	0.48	0.52	12	4072	12	0	11	1	13
SRP_00173	Bacteria_large_SRP links to Rfam database...	0.72	0.70	0.73	63	38140	26	1	22	3	27
SRP_00193	-	0.67	0.67	0.69	24	6868	12	1	10	1	12
SRP_00194	Bacteria_small_SRP links to Rfam database...	0.77	0.81	0.74	17	3217	6	0	6	0	4
SRP_00197	Archaea_SRP links to Rfam database...	0.43	0.37	0.51	37	49382	36	1	35	0	64
SRP_00198	Archaea_SRP links to Rfam database...	0.42	0.35	0.51	36	50970	35	2	32	1	67
SRP_00200	Bacteria_small_SRP links to Rfam database...	0.82	0.83	0.81	30	6866	8	1	6	1	6
SRP_00216	Bacteria_small_SRP links to Rfam database...	0.93	0.93	0.93	25	3376	3	1	1	1	2
SRP_00229	Bacteria_small_SRP links to Rfam database...	0.34	0.33	0.36	9	5228	16	5	11	0	18
SRP_00233	Bacteria_small_SRP links to Rfam database...	0.94	0.88	1.00	29	5122	0	0	0	0	4
SRP_00234	Bacteria_large_SRP links to Rfam database...	0.78	0.76	0.80	65	36234	21	1	15	5	21
SRP_00243	Bacteria_small_SRP links to Rfam database...	0.97	0.94	1.00	29	5122	1	0	0	1	2
SRP_00244	Bacteria_small_SRP links to Rfam database...	0.76	0.64	0.89	25	6875	3	1	2	0	14
SRP_00266	Bacteria_small_SRP links to Rfam database...	0.65	0.55	0.76	16	4635	6	0	5	1	13
SRP_00267	Metazoa_SRP links to Rfam database...	0.79	0.78	0.80	75	44457	25	3	16	6	21
SRP_00269	Bacteria_small_SRP links to Rfam database...	0.60	0.61	0.61	20	5017	13	3	10	0	13
SRP_00273	Bacteria_small_SRP links to Rfam database...	0.90	0.90	0.90	36	6746	6	1	3	2	4
SRP_00276	Archaea_SRP links to Rfam database...	0.87	0.85	0.89	94	50615	13	5	7	1	16
SRP_00278	Archaea_SRP links to Rfam database...	0.81	0.73	0.89	77	45969	12	0	10	2	28
SRP_00285	Bacteria_small_SRP links to Rfam database...	0.89	0.83	0.96	25	3715	1	0	1	0	5
SRP_00303	Bacteria_small_SRP links to Rfam database...	0.81	0.84	0.77	27	6635	8	1	7	0	5
SRP_00308	Bacteria_large_SRP links to Rfam database...	0.62	0.59	0.65	52	36235	30	8	20	2	36
SRP_00317	Metazoa_SRP links to Rfam database...	0.94	0.89	0.99	87	45062	9	0	1	8	11
SRP_00321	Archaea_SRP links to Rfam database...	0.77	0.75	0.79	81	47483	24	3	19	2	27
SRP_00322	Archaea_SRP links to Rfam database...	0.71	0.66	0.76	72	48421	24	4	19	1	37
SRP_00332	Archaea_SRP links to Rfam database...	0.84	0.81	0.87	86	50304	16	6	7	3	20
SRP_00333	Bacteria_small_SRP links to Rfam database...	0.86	0.85	0.88	29	5118	4	0	4	0	5
SRP_00337	Bacteria_large_SRP links to Rfam database...	0.70	0.68	0.73	62	35426	25	2	21	2	29
SRP_00338	Bacteria_small_SRP links to Rfam database...	0.94	0.94	0.94	34	5424	2	0	2	0	2
SRP_00342	Bacteria_small_SRP links to Rfam database...	0.59	0.60	0.58	15	3979	16	1	10	5	10
SRP_00354	-	0.77	0.76	0.78	71	38690	23	0	20	3	22
SRP_00355	-	0.83	0.81	0.84	78	41812	19	2	13	4	18
SRP_00358	Bacteria_small_SRP links to Rfam database...	0.93	0.91	0.94	32	6294	3	1	1	1	3
SRP_00383	Bacteria_small_SRP links to Rfam database...	0.22	0.21	0.24	5	3219	16	3	13	0	19
TMR_00036	tmRNA links to Rfam database...	0.54	0.50	0.57	51	90436	55	11	27	17	50
TMR_00123	tmRNA links to Rfam database...	0.32	0.27	0.39	27	66360	48	7	36	5	74
TMR_00180	tmRNA links to Rfam database...	0.65	0.66	0.65	65	67061	48	8	27	13	34
TMR_00240	tmRNA links to Rfam database...	0.30	0.21	0.43	18	63148	27	7	17	3	67
TMR_00352	tmRNA links to Rfam database...	0.20	0.16	0.25	12	95218	60	12	24	24	63
TMR_00353	tmRNA links to Rfam database...	0.48	0.46	0.50	48	84159	57	17	31	9	57
TMR_00357	tmRNA links to Rfam database...	0.44	0.40	0.48	37	82951	54	13	27	14	55
TMR_00361	-	0.30	0.33	0.27	24	93438	84	23	43	18	48
TMR_00374	tmRNA links to Rfam database...	0.22	0.23	0.21	21	81708	84	20	61	3	71
TMR_00384	tmRNA links to Rfam database...	0.29	0.24	0.36	26	65630	51	2	45	4	82
TMR_00395	tmRNA links to Rfam database...	0.47	0.36	0.63	39	64558	27	3	20	4	70
TMR_00398	tmRNA links to Rfam database...	0.64	0.56	0.75	59	65262	25	1	19	5	47
TMR_00399	tmRNA links to Rfam database...	0.35	0.31	0.41	29	64909	43	16	26	1	65
TMR_00430	tmRNA links to Rfam database...	0.32	0.23	0.45	25	82565	31	4	27	0	84
TMR_00431	tmRNA links to Rfam database...	0.73	0.67	0.79	37	51956	53	5	5	43	18
TMR_00443	tmRNA links to Rfam database...	0.41	0.31	0.55	32	67103	35	5	21	9	72
TMR_00457	tmRNA links to Rfam database...	0.45	0.41	0.49	42	78521	48	8	35	5	60
TMR_00469	tmRNA links to Rfam database...	0.41	0.42	0.40	42	64516	62	11	51	0	58
TMR_00502	tmRNA links to Rfam database...	0.31	0.30	0.33	28	75380	60	11	47	2	65
TMR_00503	tmRNA links to Rfam database...	0.39	0.33	0.45	37	67814	52	4	41	7	74
TMR_00519	tmRNA links to Rfam database...	0.14	0.15	0.14	14	63089	97	15	72	10	81
TMR_00528	tmRNA links to Rfam database...	0.32	0.15	0.65	15	63167	18	3	5	10	82
TMR_00541	tmRNA links to Rfam database...	0.52	0.51	0.52	54	61673	55	1	48	6	51
TMR_00547	tmRNA links to Rfam database...	0.50	0.45	0.56	45	65260	36	4	32	0	55
TMR_00562	tmRNA links to Rfam database...	0.24	0.23	0.25	23	72680	70	14	54	2	79
TMR_00566	tmRNA links to Rfam database...	0.50	0.31	0.79	31	60687	13	1	7	5	69
TMR_00571	tmRNA links to Rfam database...	0.50	0.33	0.75	33	60682	18	2	9	7	66
TMR_00584	tmRNA links to Rfam database...	0.58	0.55	0.62	53	60990	38	7	25	6	44
TMR_00594	tmRNA links to Rfam database...	0.24	0.24	0.24	25	79296	84	16	64	4	79
TMR_00605	tmRNA links to Rfam database...	0.53	0.47	0.61	51	74221	35	9	24	2	57
TMR_00609	tmRNA links to Rfam database...	0.67	0.63	0.71	71	63446	29	8	21	0	42
TMR_00624	tmRNA links to Rfam database...	0.44	0.41	0.47	44	62388	59	2	47	10	64
TMR_00683	tmRNA links to Rfam database...	0.15	0.11	0.20	11	82974	51	9	34	8	89
TMR_00698	tmRNA links to Rfam database...	0.55	0.49	0.61	51	63107	35	6	26	3	53
TMR_00703	tmRNA links to Rfam database...	0.37	0.31	0.44	31	67457	44	7	33	4	68
TMR_00706	tmRNA links to Rfam database...	0.64	0.57	0.72	59	66348	26	6	17	3	44
TMR_00711	tmRNA links to Rfam database...	0.57	0.58	0.56	57	67795	48	16	28	4	41

^top

Performance of NanoFolder - scored lower in this pairwise comparison

1. Total counts & total scores for NanoFolder

Total Base Pair Counts
Total TP	3704
Total TN	8589367
Total FP	19087
Total FP CONTRA	3388
Total FP INCONS	15012
Total FP COMP	687
Total FN	12459

Total Scores
MCC	0.194
Average MCC ± 95% Confidence Intervals	0.270 ± 0.031
Sensitivity	0.229
Positive Predictive Value	0.168
Nr of predictions	251

^top

2. Individual counts for NanoFolder [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00017	RNaseP_nuc links to Rfam database...	0.02	0.03	0.02	2	50914	131	38	86	7	62
ASE_00083	RNaseP_bact_a links to Rfam database...	0.22	0.25	0.20	27	62347	108	12	95	1	83
ASE_00122	RNaseP_bact_a links to Rfam database...	0.27	0.30	0.24	26	43258	84	13	68	3	62
ASE_00185	RNaseP_bact_a links to Rfam database...	0.17	0.19	0.16	24	73382	134	14	116	4	104
ASE_00190	RNaseP_bact_b links to Rfam database...	0.24	0.28	0.21	25	45334	93	14	78	1	65
ASE_00191	RNaseP_arch links to Rfam database...	0.36	0.43	0.30	26	29559	67	15	46	6	35
ASE_00196	RNaseP_arch links to Rfam database...	0.49	0.57	0.42	43	31524	62	16	43	3	32
ASE_00221	RNaseP_bact_a links to Rfam database...	0.20	0.21	0.18	25	64484	112	10	101	1	92
ASE_00227	RNaseP_bact_a links to Rfam database...	0.28	0.31	0.25	41	78840	122	20	102	0	92
ASE_00228	RNaseP_bact_a links to Rfam database...	0.05	0.06	0.04	5	46858	109	17	91	1	81
ASE_00229	RNaseP_bact_a links to Rfam database...	0.12	0.14	0.11	12	42380	97	12	82	3	75
ASE_00231	RNaseP_bact_a links to Rfam database...	0.37	0.42	0.33	40	47773	84	17	65	2	56
ASE_00234	RNaseP_bact_a links to Rfam database...	0.25	0.27	0.23	35	75315	117	10	106	1	94
ASE_00238	RNaseP_bact_a links to Rfam database...	0.26	0.30	0.23	34	64111	119	18	98	3	80
ASE_00248	RNaseP_bact_a links to Rfam database...	0.13	0.15	0.12	17	62340	124	9	115	0	97
ASE_00250	RNaseP_bact_a links to Rfam database...	0.25	0.29	0.23	38	78835	135	17	113	5	93
ASE_00254	RNaseP_bact_a links to Rfam database...	0.15	0.16	0.14	13	36761	88	3	79	6	69
ASE_00255	RNaseP_bact_a links to Rfam database...	0.11	0.12	0.10	16	74530	146	16	129	1	114
ASE_00257	RNaseP_bact_a links to Rfam database...	0.37	0.42	0.33	41	50917	85	15	67	3	56
ASE_00267	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	45036	115	9	105	1	88
ASE_00270	RNaseP_bact_a links to Rfam database...	0.19	0.21	0.17	27	72232	132	14	117	1	101
ASE_00274	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	55487	126	12	112	2	103
ASE_00277	RNaseP_bact_a links to Rfam database...	0.10	0.12	0.08	11	48071	123	23	100	0	80
ASE_00279	RNaseP_bact_a links to Rfam database...	0.14	0.16	0.13	16	53177	109	16	92	1	85
ASE_00285	RNaseP_bact_a links to Rfam database...	0.34	0.36	0.31	44	68866	98	14	82	2	78
ASE_00287	RNaseP_bact_a links to Rfam database...	0.15	0.17	0.14	17	54824	107	14	91	2	86
ASE_00294	RNaseP_bact_a links to Rfam database...	0.12	0.13	0.12	23	114287	172	11	160	1	148
ASE_00295	RNaseP_bact_a links to Rfam database...	0.14	0.16	0.13	21	73761	140	19	119	2	110
ASE_00298	RNaseP_bact_a links to Rfam database...	0.09	0.10	0.08	11	67389	129	8	120	1	102
ASE_00318	RNaseP_bact_b links to Rfam database...	0.03	0.04	0.03	5	80039	156	21	135	0	113
ASE_00321	RNaseP_bact_b links to Rfam database...	0.11	0.14	0.09	12	54484	122	22	97	3	76
ASE_00335	RNaseP_bact_b links to Rfam database...	0.10	0.12	0.09	14	75304	151	22	126	3	102
ASE_00339	RNaseP_bact_a links to Rfam database...	0.25	0.29	0.22	34	80042	129	20	104	5	85
ASE_00340	RNaseP_bact_a links to Rfam database...	0.06	0.07	0.05	6	45943	110	13	94	3	79
ASE_00343	RNaseP_bact_a links to Rfam database...	0.14	0.17	0.12	19	83275	145	31	111	3	94
ASE_00344	-	0.30	0.38	0.24	21	27175	84	18	47	19	35
ASE_00350	-	0.00	0.00	0.00	0	29557	101	20	69	12	52
ASE_00367	RNaseP_bact_a links to Rfam database...	0.08	0.09	0.07	8	42960	110	10	93	7	78
ASE_00370	RNaseP_bact_a links to Rfam database...	0.03	0.04	0.03	3	41796	109	18	88	3	81
ASE_00372	RNaseP_bact_a links to Rfam database...	0.17	0.20	0.15	20	51871	113	19	93	1	80
ASE_00375	RNaseP_bact_a links to Rfam database...	0.12	0.14	0.11	15	60246	120	10	107	3	95
ASE_00376	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	56822	136	9	122	5	105
ASE_00377	RNaseP_bact_a links to Rfam database...	0.25	0.27	0.23	29	57505	98	10	86	2	78
ASE_00386	RNaseP_bact_a links to Rfam database...	0.14	0.16	0.13	15	50284	106	9	95	2	81
ASE_00393	RNaseP_bact_a links to Rfam database...	0.31	0.35	0.27	33	47773	90	18	71	1	60
ASE_00412	RNaseP_bact_a links to Rfam database...	0.15	0.17	0.14	18	58183	111	14	96	1	87
ASE_00413	RNaseP_bact_a links to Rfam database...	0.08	0.10	0.07	8	44438	108	19	86	3	73
ASE_00416	RNaseP_bact_a links to Rfam database...	0.39	0.43	0.35	54	77267	103	18	82	3	73
ASE_00417	RNaseP_arch links to Rfam database...	0.32	0.36	0.28	36	54486	98	18	75	5	64
ASE_00422	RNaseP_bact_a links to Rfam database...	0.28	0.31	0.25	29	46856	87	9	77	1	65
ASE_00427	RNaseP_nuc links to Rfam database...	0.06	0.09	0.04	4	40651	105	35	65	5	42
ASE_00428	RNaseP_bact_a links to Rfam database...	0.24	0.26	0.22	33	76483	121	13	107	1	92
ASE_00429	-	0.08	0.09	0.07	6	28114	84	14	69	1	60
ASE_00430	RNaseP_bact_a links to Rfam database...	0.16	0.18	0.14	17	46852	102	10	92	0	80
ASE_00434	RNaseP_bact_b links to Rfam database...	0.29	0.34	0.25	37	68116	122	20	92	10	73
ASE_00437	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	79238	164	12	151	1	135
ASE_00451	RNaseP_bact_a links to Rfam database...	0.20	0.22	0.19	27	70731	118	8	110	0	98
ASE_00454	RNaseP_nuc links to Rfam database...	0.24	0.32	0.19	20	43260	103	28	57	18	43
CRW_00648	-	0.05	0.06	0.04	9	137864	213	24	178	11	139
CRW_00654	-	0.41	0.47	0.36	58	78049	105	18	85	2	66
CRW_00658	-	0.21	0.26	0.16	27	74527	137	28	109	0	75
CRW_00663	-	0.08	0.10	0.07	6	26014	90	17	69	4	55
CRW_00664	-	0.14	0.19	0.11	15	53486	134	42	85	7	63
CRW_00671	Intron_gpI links to Rfam database...	0.18	0.21	0.16	24	62682	130	23	106	1	93
CRW_00672	Intron_gpI links to Rfam database...	0.36	0.43	0.31	48	72233	114	35	74	5	63
CRW_00674	Intron_gpI links to Rfam database...	0.16	0.19	0.14	23	83274	142	19	120	3	101
CRW_00676	Intron_gpI links to Rfam database...	0.11	0.14	0.09	16	93347	169	29	136	4	99
CRW_00685	-	0.11	0.15	0.08	16	156867	212	64	133	15	90
CRW_00688	-	0.33	0.40	0.27	23	21859	64	21	42	1	34
CRW_00721	-	0.22	0.31	0.15	21	58515	133	46	71	16	47
CRW_00756	-	0.04	0.05	0.03	9	194742	253	54	195	4	163
CRW_01535	5S_rRNA links to Rfam database...	0.20	0.24	0.17	9	7088	43	7	36	0	28
CRW_01539	5S_rRNA links to Rfam database...	0.10	0.11	0.10	4	7099	40	1	36	3	33
CRW_01563	5S_rRNA links to Rfam database...	0.11	0.14	0.11	5	6856	43	5	37	1	32
CRW_01583	5S_rRNA links to Rfam database...	0.36	0.41	0.33	15	7095	31	8	22	1	22
CRW_01590	5S_rRNA links to Rfam database...	-0.01	0.00	0.00	0	7093	50	7	40	3	37
CRW_01593	5S_rRNA links to Rfam database...	0.32	0.38	0.29	14	7091	36	5	30	1	23
CRW_01595	5S_rRNA links to Rfam database...	-0.01	0.00	0.00	0	8459	57	10	46	1	37
CRW_01603	5S_rRNA links to Rfam database...	0.41	0.46	0.38	17	7095	29	6	22	1	20
CRW_01617	5S_rRNA links to Rfam database...	0.20	0.24	0.17	9	7087	45	7	37	1	28
CRW_01625	5S_rRNA links to Rfam database...	0.43	0.49	0.38	18	7093	31	7	22	2	19
PDB_00011	-	0.96	0.92	1.00	11	265	0	0	0	0	1
PDB_00017	-	0.66	0.67	0.67	10	688	5	1	4	0	5
PDB_00036	-	-0.01	0.00	0.00	0	3457	29	1	28	0	27
PDB_00070	tRNA links to Rfam database...	0.25	0.29	0.23	7	2819	24	4	20	0	17
PDB_00078	-	0.00	0.00	0.00	0	49644	126	10	116	0	115
PDB_00113	-	0.94	0.89	1.00	8	223	0	0	0	0	1
PDB_00119	-	0.95	0.90	1.00	9	244	0	0	0	0	1
PDB_00136	-	0.70	0.73	0.68	19	2387	9	1	8	0	7
PDB_00137	-	0.87	0.77	1.00	10	396	0	0	0	0	3
PDB_00160	-	0.89	0.89	0.89	8	267	2	0	1	1	1
PDB_00178	-	-0.02	0.00	0.00	0	517	11	1	10	0	11
PDB_00221	-	0.94	0.89	1.00	8	245	0	0	0	0	1
PDB_00278	-	0.04	0.06	0.04	4	24875	98	13	84	1	68
PDB_00312	-	1.00	1.00	1.00	9	426	1	0	0	1	0
PDB_00326	-	0.58	0.64	0.53	18	3707	16	4	12	0	10
PDB_00341	-	0.47	0.44	0.54	7	690	6	0	6	0	9
PDB_00349	-	0.10	0.14	0.10	2	926	18	0	18	0	12
PDB_00417	-	0.00	0.00	0.00	0	14138	58	2	56	0	56
PDB_00430	tRNA links to Rfam database...	0.38	0.44	0.34	11	3208	21	6	15	0	14
PDB_00527	-	-0.02	0.00	0.00	0	292	8	2	6	0	5
PDB_00565	-	0.24	0.24	0.24	12	8079	37	1	36	0	38
PDB_00570	-	-0.01	0.00	0.00	0	2257	21	0	21	0	22
PDB_00571	tRNA links to Rfam database...	-0.01	0.00	0.00	0	3286	36	6	29	1	25
PDB_00573	-	-0.01	0.00	0.00	0	6622	48	5	43	0	34
PDB_00584	-	0.47	0.53	0.43	9	1464	12	1	11	0	8
PDB_00698	-	0.97	0.95	1.00	18	843	0	0	0	0	1
PDB_00701	-	0.04	0.05	0.04	5	45319	127	14	113	0	104
PDB_00725	-	0.82	0.80	0.86	12	581	2	0	2	0	3
PDB_00734	-	0.83	0.70	1.00	7	224	0	0	0	0	3
PDB_00823	-	-0.04	0.00	0.00	0	183	7	0	7	0	9
PDB_00828	Purine links to Rfam database...	0.30	0.33	0.28	9	2453	23	0	23	0	18
PDB_00851	-	0.16	0.17	0.17	7	4711	35	3	32	0	34
PDB_00890	-	-0.02	0.00	0.00	0	690	13	2	11	0	14
PDB_00917	-	0.31	0.34	0.29	32	35136	81	10	67	4	63
PDB_00923	-	1.00	1.00	1.00	6	184	2	0	0	2	0
PDB_00994	-	0.40	0.50	0.33	21	10521	44	13	30	1	21
PDB_01009	tRNA links to Rfam database...	0.27	0.33	0.23	7	2455	25	3	20	2	14
PDB_01051	Telomerase-cil links to Rfam database...	-0.02	0.00	0.00	0	885	18	1	17	0	13
PDB_01074	-	-0.01	0.00	0.00	0	2747	28	3	25	0	25
PDB_01076	-	0.00	0.00	0.00	0	23356	80	7	73	0	79
PDB_01130	-	-0.01	0.00	0.00	0	1742	28	5	23	0	20
PDB_01193	-	0.08	0.09	0.07	14	105834	185	28	154	3	137
PDB_01199	-	-0.01	0.00	0.00	0	2116	29	2	27	0	24
PDB_01236	ykoK links to Rfam database...	0.31	0.33	0.30	18	11568	43	3	39	1	36
PDB_01275	-	0.04	0.04	0.04	3	18258	75	6	69	0	68
RFA_00416	Hammerhead_3 links to Rfam database...	0.94	1.00	0.88	15	1468	6	2	0	4	0
RFA_00434	Hammerhead_3 links to Rfam database...	0.84	1.00	0.71	15	1410	8	6	0	2	0
RFA_00436	Hammerhead_3 links to Rfam database...	0.86	1.00	0.75	15	1411	7	5	0	2	0
RFA_00442	Hammerhead_3 links to Rfam database...	0.94	1.00	0.88	15	1414	4	2	0	2	0
RFA_00446	Hammerhead_3 links to Rfam database...	0.85	0.93	0.78	14	1467	7	3	1	3	1
RFA_00604	Telomerase-cil links to Rfam database...	0.42	0.54	0.33	19	13472	53	14	25	14	16
RFA_00620	Telomerase-cil links to Rfam database...	0.16	0.23	0.11	9	21864	80	29	43	8	30
RFA_00664	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	978	13	0	12	1	14
RFA_00674	Hammerhead_1 links to Rfam database...	0.12	0.14	0.13	2	1112	15	0	14	1	12
RFA_00675	Hammerhead_1 links to Rfam database...	0.28	0.29	0.29	4	976	10	1	9	0	10
RFA_00677	Hammerhead_1 links to Rfam database...	0.62	0.64	0.60	9	975	10	0	6	4	5
RFA_00684	Hammerhead_1 links to Rfam database...	0.74	0.71	0.77	10	977	5	2	1	2	4
RFA_00703	Hammerhead_1 links to Rfam database...	0.26	0.36	0.19	5	4252	32	5	16	11	9
RFA_00716	Hammerhead_1 links to Rfam database...	-0.02	0.00	0.00	0	929	17	0	17	0	14
RFA_00717	Hammerhead_1 links to Rfam database...	0.64	0.64	0.64	9	889	5	2	3	0	5
RFA_00730	s2m links to Rfam database...	0.38	0.42	0.36	5	889	10	3	6	1	7
RFA_00763	s2m links to Rfam database...	0.38	0.42	0.36	5	889	10	3	6	1	7
RFA_00765	s2m links to Rfam database...	0.39	0.42	0.38	5	890	9	2	6	1	7
RFA_00770	Corona_pk3 links to Rfam database...	-0.01	0.00	0.00	0	1996	24	0	20	4	18
RFA_00773	Corona_pk3 links to Rfam database...	0.93	1.00	0.86	18	1932	9	3	0	6	0
RFA_00808	RydC links to Rfam database...	0.83	1.00	0.70	16	1993	7	7	0	0	0
RFA_00816	R2_retro_el links to Rfam database...	0.00	0.00	0.00	0	23133	89	30	57	2	41
SPR_00030	-	0.47	0.52	0.42	11	2459	16	2	13	1	10
SPR_00066	tRNA links to Rfam database...	0.47	0.57	0.39	12	2819	20	4	15	1	9
SPR_00228	tRNA links to Rfam database...	0.44	0.60	0.32	12	3791	26	15	10	1	8
SPR_00314	tRNA links to Rfam database...	0.47	0.57	0.39	12	2895	21	9	10	2	9
SPR_00331	tRNA links to Rfam database...	0.48	0.60	0.39	12	2744	19	6	13	0	8
SPR_00333	tRNA links to Rfam database...	0.25	0.33	0.21	7	2741	27	10	17	0	14
SPR_00353	tRNA links to Rfam database...	0.64	0.81	0.52	17	2817	16	8	8	0	4
SPR_00398	-	-0.01	0.00	0.00	0	2185	28	10	16	2	13
SPR_00452	tRNA links to Rfam database...	0.27	0.33	0.23	7	2820	24	7	16	1	14
SPR_00456	tRNA links to Rfam database...	0.49	0.57	0.43	12	2822	19	5	11	3	9
SPR_00462	tRNA links to Rfam database...	0.65	0.74	0.58	14	2391	11	4	6	1	5
SPR_00476	tRNA links to Rfam database...	0.47	0.52	0.42	11	2749	17	4	11	2	10
SPR_00496	tRNA links to Rfam database...	0.47	0.57	0.40	12	2745	22	7	11	4	9
SPR_00497	tRNA links to Rfam database...	0.27	0.33	0.23	7	2745	23	5	18	0	14
SPR_00502	tRNA links to Rfam database...	0.27	0.33	0.23	7	2896	26	2	21	3	14
SPR_00509	tRNA links to Rfam database...	0.23	0.30	0.19	6	2895	25	8	17	0	14
SPR_00512	tRNA links to Rfam database...	0.61	0.75	0.50	15	2896	15	6	9	0	5
SPR_00542	tRNA links to Rfam database...	0.26	0.33	0.22	7	3538	28	4	21	3	14
SPR_00557	tRNA links to Rfam database...	0.42	0.52	0.34	11	2818	22	8	13	1	10
SPR_00832	-	0.53	0.67	0.43	10	1630	13	5	8	0	5
SPR_00868	tRNA links to Rfam database...	0.49	0.57	0.43	12	2898	19	5	11	3	9
SPR_00932	tRNA links to Rfam database...	0.43	0.52	0.35	11	2819	21	7	13	1	10
SPR_00957	tRNA links to Rfam database...	0.63	0.76	0.53	16	2973	15	7	7	1	5
SPR_01040	tRNA links to Rfam database...	0.15	0.19	0.13	4	2744	27	4	23	0	17
SPR_01143	tRNA links to Rfam database...	0.41	0.48	0.36	10	2528	18	8	10	0	11
SRP_00005	-	-0.01	0.00	0.00	0	3966	39	6	33	0	24
SRP_00038	Bacteria_small_SRP links to Rfam database...	0.23	0.27	0.20	9	5005	36	1	35	0	24
SRP_00046	Bacteria_small_SRP links to Rfam database...	0.33	0.38	0.29	12	4712	30	3	26	1	20
SRP_00103	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	45319	132	14	118	0	102
SRP_00117	Metazoa_SRP links to Rfam database...	0.20	0.23	0.18	23	45322	106	9	97	0	79
SRP_00138	-	0.44	0.52	0.39	14	3969	24	8	14	2	13
SRP_00144	Archaea_SRP links to Rfam database...	0.05	0.06	0.05	6	46538	122	17	104	1	88
SRP_00170	Bacteria_small_SRP links to Rfam database...	0.29	0.36	0.25	9	4059	28	4	23	1	16
SRP_00173	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	38104	124	13	109	2	90
SRP_00193	-	0.16	0.19	0.15	7	6855	43	4	37	2	29
SRP_00194	Bacteria_small_SRP links to Rfam database...	0.27	0.33	0.23	7	3209	27	5	19	3	14
SRP_00197	Archaea_SRP links to Rfam database...	0.12	0.14	0.11	14	49324	117	16	101	0	87
SRP_00198	Archaea_SRP links to Rfam database...	0.07	0.08	0.06	8	50903	129	15	114	0	95
SRP_00200	Bacteria_small_SRP links to Rfam database...	0.41	0.47	0.35	17	6855	31	4	27	0	19
SRP_00216	Bacteria_small_SRP links to Rfam database...	0.44	0.48	0.41	13	3371	19	4	15	0	14
SRP_00229	Bacteria_small_SRP links to Rfam database...	0.42	0.52	0.35	14	5213	26	8	18	0	13
SRP_00233	Bacteria_small_SRP links to Rfam database...	0.25	0.30	0.22	10	5106	35	4	31	0	23
SRP_00234	Bacteria_large_SRP links to Rfam database...	0.21	0.24	0.18	21	36200	97	19	75	3	65
SRP_00243	Bacteria_small_SRP links to Rfam database...	0.47	0.55	0.40	17	5109	25	7	18	0	14
SRP_00244	Bacteria_small_SRP links to Rfam database...	0.38	0.44	0.34	17	6853	33	2	31	0	22
SRP_00266	Bacteria_small_SRP links to Rfam database...	0.55	0.66	0.46	19	4615	22	8	14	0	10
SRP_00267	Metazoa_SRP links to Rfam database...	0.04	0.05	0.04	5	44424	122	15	107	0	91
SRP_00269	Bacteria_small_SRP links to Rfam database...	0.46	0.52	0.43	17	5010	24	6	17	1	16
SRP_00273	Bacteria_small_SRP links to Rfam database...	0.36	0.40	0.33	16	6737	34	6	27	1	24
SRP_00276	Archaea_SRP links to Rfam database...	0.19	0.22	0.18	24	50585	112	10	102	0	86
SRP_00278	Archaea_SRP links to Rfam database...	0.33	0.36	0.30	38	45928	90	14	76	0	67
SRP_00285	Bacteria_small_SRP links to Rfam database...	0.38	0.43	0.35	13	3704	24	6	18	0	17
SRP_00303	Bacteria_small_SRP links to Rfam database...	0.36	0.41	0.33	13	6630	27	3	24	0	19
SRP_00308	Bacteria_large_SRP links to Rfam database...	0.14	0.17	0.12	15	36189	112	18	93	1	73
SRP_00317	Metazoa_SRP links to Rfam database...	0.14	0.16	0.12	16	45018	116	16	100	0	82
SRP_00321	Archaea_SRP links to Rfam database...	0.44	0.49	0.40	53	47453	81	16	64	1	55
SRP_00322	Archaea_SRP links to Rfam database...	0.22	0.25	0.21	27	48385	105	8	96	1	82
SRP_00332	Archaea_SRP links to Rfam database...	0.12	0.14	0.11	15	50269	120	8	111	1	91
SRP_00333	Bacteria_small_SRP links to Rfam database...	0.20	0.24	0.19	8	5108	35	3	32	0	26
SRP_00337	Bacteria_large_SRP links to Rfam database...	0.42	0.46	0.38	42	35400	70	15	54	1	49
SRP_00338	Bacteria_small_SRP links to Rfam database...	0.52	0.56	0.49	20	5419	22	4	17	1	16
SRP_00342	Bacteria_small_SRP links to Rfam database...	0.20	0.24	0.17	6	3970	29	7	22	0	19
SRP_00354	-	0.06	0.08	0.06	7	38654	120	15	105	0	86
SRP_00355	-	0.09	0.10	0.08	10	41778	119	9	108	2	86
SRP_00358	Bacteria_small_SRP links to Rfam database...	0.32	0.37	0.28	13	6282	33	4	29	0	22
SRP_00383	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	3205	35	9	26	0	24
TMR_00036	tmRNA links to Rfam database...	0.22	0.29	0.17	29	90359	153	37	100	16	72
TMR_00123	tmRNA links to Rfam database...	0.19	0.23	0.16	23	66283	126	20	104	2	78
TMR_00180	tmRNA links to Rfam database...	0.12	0.16	0.10	16	66999	149	35	111	3	83
TMR_00240	tmRNA links to Rfam database...	0.23	0.31	0.17	26	63041	128	39	84	5	59
TMR_00352	tmRNA links to Rfam database...	0.07	0.09	0.05	7	95133	171	39	87	45	68
TMR_00353	tmRNA links to Rfam database...	0.41	0.51	0.32	54	84087	127	49	65	13	51
TMR_00357	tmRNA links to Rfam database...	0.26	0.34	0.19	31	82869	146	44	84	18	61
TMR_00361	-	0.06	0.10	0.04	7	93368	174	64	89	21	65
TMR_00374	tmRNA links to Rfam database...	0.09	0.13	0.07	12	81631	174	44	123	7	80
TMR_00384	tmRNA links to Rfam database...	0.17	0.20	0.14	22	65550	133	26	105	2	86
TMR_00395	tmRNA links to Rfam database...	0.27	0.31	0.24	34	64478	115	10	98	7	75
TMR_00398	tmRNA links to Rfam database...	0.05	0.07	0.05	7	65197	139	24	113	2	99
TMR_00399	tmRNA links to Rfam database...	0.20	0.26	0.16	24	64833	130	38	85	7	70
TMR_00430	tmRNA links to Rfam database...	0.18	0.23	0.15	25	82450	148	34	112	2	84
TMR_00431	tmRNA links to Rfam database...	0.24	0.33	0.17	18	51899	127	26	60	41	37
TMR_00443	tmRNA links to Rfam database...	0.17	0.20	0.15	21	67018	126	24	98	4	83
TMR_00457	tmRNA links to Rfam database...	0.19	0.25	0.15	25	78443	141	39	99	3	77
TMR_00469	tmRNA links to Rfam database...	0.10	0.12	0.08	12	64469	145	27	112	6	88
TMR_00502	tmRNA links to Rfam database...	0.14	0.19	0.11	18	75303	150	45	100	5	75
TMR_00503	tmRNA links to Rfam database...	0.11	0.14	0.10	15	67741	141	20	120	1	96
TMR_00519	tmRNA links to Rfam database...	0.04	0.05	0.03	5	63046	141	33	106	2	90
TMR_00528	tmRNA links to Rfam database...	0.13	0.15	0.11	15	63051	131	20	104	7	82
TMR_00541	tmRNA links to Rfam database...	0.12	0.14	0.10	15	61630	139	22	109	8	90
TMR_00547	tmRNA links to Rfam database...	0.28	0.35	0.23	35	65188	122	37	81	4	65
TMR_00562	tmRNA links to Rfam database...	0.09	0.12	0.08	12	72617	147	27	115	5	90
TMR_00566	tmRNA links to Rfam database...	0.13	0.16	0.11	16	60582	132	22	106	4	84
TMR_00571	tmRNA links to Rfam database...	0.05	0.06	0.04	6	60577	149	19	124	6	93
TMR_00584	tmRNA links to Rfam database...	0.01	0.01	0.01	1	60922	159	33	119	7	96
TMR_00594	tmRNA links to Rfam database...	0.08	0.10	0.06	10	79238	156	30	123	3	94
TMR_00605	tmRNA links to Rfam database...	0.28	0.35	0.23	38	74141	129	36	90	3	70
TMR_00609	tmRNA links to Rfam database...	0.53	0.62	0.45	70	63391	89	28	57	4	43
TMR_00624	tmRNA links to Rfam database...	0.36	0.44	0.30	47	62325	111	27	82	2	61
TMR_00683	tmRNA links to Rfam database...	0.01	0.02	0.01	2	82854	176	50	122	4	98
TMR_00698	tmRNA links to Rfam database...	0.20	0.24	0.17	25	63042	124	27	96	1	79
TMR_00703	tmRNA links to Rfam database...	0.10	0.12	0.08	12	67376	140	26	114	0	87
TMR_00706	tmRNA links to Rfam database...	0.14	0.17	0.11	17	66281	133	29	103	1	86
TMR_00711	tmRNA links to Rfam database...	0.18	0.22	0.14	22	67740	137	41	93	3	76

^top

Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.

Table of contents:

Overview

Performance plots

Performance of Sfold - scored higher in this pairwise comparison

1. Total counts & total scores for Sfold

2. Individual counts for Sfold [ download as .csv ]

Performance of NanoFolder - scored lower in this pairwise comparison

1. Total counts & total scores for NanoFolder

2. Individual counts for NanoFolder [ download as .csv ]