CompaRNA - on-line benchmarks of RNA structure prediction methods

Laboratory of Structural Bioinformatics @ Adam Mickiewicz University in Poznan

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Overview

Metric	ContextFold		Multilign(20)
MCC	0.921	>	0.784
Average MCC ± 95% Confidence Intervals	0.920 ± 0.017	>	0.750 ± 0.035
Sensitivity	0.896	>	0.697
Positive Predictive Value	0.948	>	0.885
Total TP	7043	>	5476
Total TN	1242503	<	1243743
Total FP	565	<	1072
Total FP CONTRA	34	<	65
Total FP INCONS	350	<	646
Total FP COMP	181	<	361
Total FN	815	<	2382
P-value	3.56938820447e-08

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Performance plots

Comparison of performance of ContextFold and Multilign(20). Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data (individual counts for ContextFold and Multilign(20)).
Average Matthews Correlation Coefficients (MCC) with 95% confidence intervals (CIs) were plotted for different RNA families, for which at least 3 members were present in the benchmarking dataset. 'n' denotes the number of MCCs used to calculate the average and CI. See tables below for raw data (individual counts for ContextFold and Multilign(20)).
Comparison of average Matthews Correlation Coefficients (MCCs) for ContextFold and Multilign(20). The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data (individual counts for ContextFold and Multilign(20)).

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Performance of ContextFold - scored higher in this pairwise comparison

1. Total counts & total scores for ContextFold

Total Base Pair Counts
Total TP	7043
Total TN	1242503
Total FP	565
Total FP CONTRA	34
Total FP INCONS	350
Total FP COMP	181
Total FN	815

Total Scores
MCC	0.921
Average MCC ± 95% Confidence Intervals	0.920 ± 0.017
Sensitivity	0.896
Positive Predictive Value	0.948
Nr of predictions	311

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2. Individual counts for ContextFold [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
CRW_00548	5S_rRNA links to Rfam database...	0.93	0.87	1.00	33	7348	0	0	0	0	5
CRW_00552	5S_rRNA links to Rfam database...	0.95	0.90	1.00	35	7105	1	0	0	1	4
CRW_00555	5S_rRNA links to Rfam database...	0.75	0.70	0.80	28	7591	8	0	7	1	12
CRW_00567	5S_rRNA links to Rfam database...	0.96	0.93	1.00	37	7466	2	0	0	2	3
CRW_00570	5S_rRNA links to Rfam database...	0.88	0.89	0.87	33	6865	6	0	5	1	4
CRW_00573	5S_rRNA links to Rfam database...	0.95	0.90	1.00	36	7104	0	0	0	0	4
CRW_01484	5S_rRNA links to Rfam database...	0.92	0.85	1.00	33	7470	0	0	0	0	6
CRW_01485	5S_rRNA links to Rfam database...	0.89	0.79	1.00	31	7472	0	0	0	0	8
CRW_01487	5S_rRNA links to Rfam database...	0.80	0.73	0.88	30	7469	4	0	4	0	11
CRW_01489	5S_rRNA links to Rfam database...	0.92	0.85	1.00	33	7470	0	0	0	0	6
CRW_01491	5S_rRNA links to Rfam database...	0.81	0.72	0.91	31	8351	3	0	3	0	12
CRW_01492	5S_rRNA links to Rfam database...	0.80	0.79	0.83	33	7586	8	0	7	1	9
CRW_01494	5S_rRNA links to Rfam database...	0.95	0.90	1.00	36	7104	0	0	0	0	4
CRW_01497	5S_rRNA links to Rfam database...	0.88	0.80	0.97	32	7107	2	0	1	1	8
CRW_01498	5S_rRNA links to Rfam database...	0.98	0.95	1.00	41	8087	1	0	0	1	2
CRW_01499	5S_rRNA links to Rfam database...	0.76	0.68	0.85	28	7968	7	0	5	2	13
CRW_01500	5S_rRNA links to Rfam database...	0.95	0.89	1.00	34	7716	1	0	0	1	4
CRW_01501	5S_rRNA links to Rfam database...	0.87	0.84	0.90	38	8473	4	0	4	0	7
CRW_01508	5S_rRNA links to Rfam database...	0.95	0.90	1.00	38	7963	0	0	0	0	4
CRW_01532	5S_rRNA links to Rfam database...	0.96	0.92	1.00	34	7106	1	0	0	1	3
CRW_01533	5S_rRNA links to Rfam database...	0.96	0.92	1.00	34	7106	0	0	0	0	3
CRW_01534	5S_rRNA links to Rfam database...	0.97	0.95	1.00	35	7105	0	0	0	0	2
CRW_01535	5S_rRNA links to Rfam database...	0.97	0.95	1.00	35	7105	0	0	0	0	2
CRW_01536	5S_rRNA links to Rfam database...	0.93	0.86	1.00	32	6989	1	0	0	1	5
CRW_01537	5S_rRNA links to Rfam database...	0.79	0.70	0.90	26	7111	3	0	3	0	11
CRW_01539	5S_rRNA links to Rfam database...	0.96	0.92	1.00	34	7106	0	0	0	0	3
CRW_01540	5S_rRNA links to Rfam database...	0.97	0.95	1.00	35	7105	0	0	0	0	2
CRW_01541	5S_rRNA links to Rfam database...	0.96	0.92	1.00	34	7106	0	0	0	0	3
CRW_01542	5S_rRNA links to Rfam database...	0.94	0.89	1.00	33	7107	1	0	0	1	4
CRW_01544	5S_rRNA links to Rfam database...	0.97	0.95	1.00	35	7105	0	0	0	0	2
CRW_01548	5S_rRNA links to Rfam database...	0.97	0.95	1.00	35	6986	1	0	0	1	2
CRW_01555	5S_rRNA links to Rfam database...	0.93	0.86	1.00	32	9013	0	0	0	0	5
CRW_01556	5S_rRNA links to Rfam database...	0.94	0.89	1.00	33	7107	0	0	0	0	4
CRW_01557	5S_rRNA links to Rfam database...	0.97	0.95	1.00	35	7105	0	0	0	0	2
CRW_01559	5S_rRNA links to Rfam database...	0.92	0.89	0.94	33	7225	3	0	2	1	4
CRW_01562	5S_rRNA links to Rfam database...	0.94	0.89	1.00	33	7107	0	0	0	0	4
CRW_01563	5S_rRNA links to Rfam database...	0.94	0.89	1.00	33	6870	0	0	0	0	4
CRW_01566	5S_rRNA links to Rfam database...	0.91	0.84	1.00	31	7109	1	0	0	1	6
CRW_01568	5S_rRNA links to Rfam database...	0.96	0.92	1.00	34	7106	0	0	0	0	3
CRW_01569	5S_rRNA links to Rfam database...	0.97	0.95	1.00	35	7105	0	0	0	0	2
CRW_01570	5S_rRNA links to Rfam database...	0.97	0.95	1.00	35	7105	1	0	0	1	2
CRW_01572	5S_rRNA links to Rfam database...	0.82	0.73	0.93	27	6992	2	0	2	0	10
CRW_01573	5S_rRNA links to Rfam database...	0.97	0.95	1.00	35	7225	0	0	0	0	2
CRW_01578	5S_rRNA links to Rfam database...	0.97	0.95	1.00	35	7105	0	0	0	0	2
CRW_01580	5S_rRNA links to Rfam database...	0.96	0.92	1.00	34	7106	1	0	0	1	3
CRW_01581	5S_rRNA links to Rfam database...	0.84	0.76	0.93	28	7110	3	0	2	1	9
CRW_01583	5S_rRNA links to Rfam database...	0.94	0.89	1.00	33	7107	1	0	0	1	4
CRW_01584	5S_rRNA links to Rfam database...	0.94	0.89	1.00	33	7107	1	0	0	1	4
CRW_01590	5S_rRNA links to Rfam database...	0.96	0.92	1.00	34	7106	0	0	0	0	3
CRW_01593	5S_rRNA links to Rfam database...	0.97	0.95	1.00	35	7105	0	0	0	0	2
CRW_01595	5S_rRNA links to Rfam database...	0.96	0.92	1.00	34	8481	0	0	0	0	3
CRW_01599	5S_rRNA links to Rfam database...	0.94	0.89	1.00	33	7107	0	0	0	0	4
CRW_01603	5S_rRNA links to Rfam database...	0.87	0.81	0.94	30	7108	2	0	2	0	7
CRW_01605	5S_rRNA links to Rfam database...	0.93	0.86	1.00	32	7108	0	0	0	0	5
CRW_01606	5S_rRNA links to Rfam database...	0.40	0.38	0.44	14	7108	18	0	18	0	23
CRW_01608	5S_rRNA links to Rfam database...	0.61	0.54	0.69	20	8356	9	1	8	0	17
CRW_01616	5S_rRNA links to Rfam database...	0.97	0.95	1.00	35	7105	0	0	0	0	2
CRW_01617	5S_rRNA links to Rfam database...	0.97	0.95	1.00	35	7105	0	0	0	0	2
CRW_01620	5S_rRNA links to Rfam database...	0.99	0.97	1.00	36	6985	0	0	0	0	1
CRW_01621	5S_rRNA links to Rfam database...	0.75	0.70	0.81	26	7108	6	0	6	0	11
CRW_01623	5S_rRNA links to Rfam database...	0.94	0.89	1.00	33	7107	0	0	0	0	4
CRW_01625	5S_rRNA links to Rfam database...	0.96	0.92	1.00	34	7106	1	0	0	1	3
PDB_00012	mir-TAR links to Rfam database...	1.00	1.00	1.00	7	399	2	0	0	2	0
PDB_00070	tRNA links to Rfam database...	0.93	0.88	1.00	21	2829	0	0	0	0	3
PDB_00213	Gammaretro_CES links to Rfam database...	0.90	0.85	0.95	35	5013	2	0	2	0	6
PDB_00229	tRNA links to Rfam database...	0.96	0.91	1.00	21	2754	0	0	0	0	2
PDB_00327	tRNA links to Rfam database...	0.96	0.91	1.00	21	3060	0	0	0	0	2
PDB_00362	tRNA links to Rfam database...	0.98	0.95	1.00	21	2829	0	0	0	0	1
PDB_00402	tRNA links to Rfam database...	0.93	0.87	1.00	20	2755	0	0	0	0	3
PDB_00431	tRNA links to Rfam database...	0.95	0.90	1.00	18	2193	0	0	0	0	2
PDB_00474	tRNA links to Rfam database...	0.96	0.91	1.00	21	2680	0	0	0	0	2
PDB_00553	mir-TAR links to Rfam database...	0.95	0.91	1.00	10	455	0	0	0	0	1
PDB_00571	tRNA links to Rfam database...	0.85	0.76	0.95	19	3301	1	1	0	0	6
PDB_00667	tRNA links to Rfam database...	0.93	0.86	1.00	19	2831	0	0	0	0	3
PDB_00741	Entero_5_CRE links to Rfam database...	0.87	0.76	1.00	13	690	0	0	0	0	4
PDB_00810	s2m links to Rfam database...	0.91	0.82	1.00	14	1067	0	0	0	0	3
PDB_00828	Purine links to Rfam database...	0.86	0.74	1.00	20	2465	0	0	0	0	7
PDB_00829	Purine links to Rfam database...	0.86	0.75	1.00	18	2260	0	0	0	0	6
PDB_00876	HIV_FE links to Rfam database...	0.89	0.85	0.94	17	972	1	0	1	0	3
PDB_01002	tRNA links to Rfam database...	0.93	0.86	1.00	18	2757	2	0	0	2	3
PDB_01020	Purine links to Rfam database...	0.86	0.74	1.00	17	2261	1	0	0	1	6
PDB_01050	UnaL2 links to Rfam database...	0.96	0.92	1.00	12	618	1	0	0	1	1
PDB_01053	tRNA links to Rfam database...	0.97	0.94	1.00	15	1363	0	0	0	0	1
PDB_01073	SAM links to Rfam database...	0.48	0.44	0.54	15	4343	13	2	11	0	19
PDB_01114	TPP links to Rfam database...	0.86	0.74	1.00	20	2830	0	0	0	0	7
PDB_01152	HIV_FS2 links to Rfam database...	0.88	0.79	1.00	11	550	0	0	0	0	3
PDB_01236	ykoK links to Rfam database...	0.90	0.81	1.00	44	11584	0	0	0	0	10
RFA_00389	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	1	0	0	1	0
RFA_00390	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	0	0	0	0	0
RFA_00391	Hammerhead_3 links to Rfam database...	0.93	0.87	1.00	13	1418	0	0	0	0	2
RFA_00396	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	0	0	0	0	1
RFA_00402	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	0	0	0	0	0
RFA_00409	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	0	0	0	0	1
RFA_00416	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1470	1	0	0	1	0
RFA_00433	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	0	0	0	0	0
RFA_00434	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	1	0	0	1	0
RFA_00436	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	1	0	0	1	0
RFA_00440	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1470	0	0	0	0	0
RFA_00442	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	1	0	0	1	0
RFA_00444	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1525	1	0	0	1	0
RFA_00583	Y_RNA links to Rfam database...	0.93	0.93	0.93	14	4935	8	0	1	7	1
RFA_00584	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	2911	1	0	0	1	0
RFA_00585	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4836	11	0	0	11	0
RFA_00586	Y_RNA links to Rfam database...	0.97	0.93	1.00	14	3902	2	0	0	2	1
RFA_00587	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4836	11	0	0	11	0
RFA_00588	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4545	14	0	0	14	0
RFA_00589	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4356	9	0	0	9	0
RFA_00594	Y_RNA links to Rfam database...	0.97	0.93	1.00	14	2761	2	0	0	2	1
RFA_00596	Y_RNA links to Rfam database...	0.00	0.00	0.00	0	5978	25	3	14	8	15
RFA_00658	Hammerhead_1 links to Rfam database...	0.89	0.79	1.00	11	1117	0	0	0	0	3
RFA_00664	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	980	11	0	10	1	14
RFA_00667	Hammerhead_1 links to Rfam database...	0.33	0.29	0.40	4	980	7	0	6	1	10
RFA_00668	Hammerhead_1 links to Rfam database...	0.67	0.57	0.80	8	980	2	0	2	0	6
RFA_00672	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	895	8	0	8	0	13
RFA_00673	Hammerhead_1 links to Rfam database...	0.80	0.64	1.00	9	1119	0	0	0	0	5
RFA_00674	Hammerhead_1 links to Rfam database...	0.92	0.86	1.00	12	1116	1	0	0	1	2
RFA_00675	Hammerhead_1 links to Rfam database...	0.80	0.64	1.00	9	981	0	0	0	0	5
RFA_00677	Hammerhead_1 links to Rfam database...	0.67	0.57	0.80	8	980	2	0	2	0	6
RFA_00678	Hammerhead_1 links to Rfam database...	0.84	0.71	1.00	10	936	0	0	0	0	4
RFA_00680	Hammerhead_1 links to Rfam database...	0.92	0.86	1.00	12	1116	1	0	0	1	2
RFA_00704	Hammerhead_1 links to Rfam database...	0.50	0.43	0.60	6	980	5	0	4	1	8
RFA_00707	Hammerhead_1 links to Rfam database...	0.89	0.79	1.00	11	1024	0	0	0	0	3
RFA_00715	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	936	10	0	10	0	14
RFA_00717	Hammerhead_1 links to Rfam database...	0.88	0.79	1.00	11	892	0	0	0	0	3
RFA_00730	s2m links to Rfam database...	1.00	1.00	1.00	12	891	1	0	0	1	0
RFA_00731	s2m links to Rfam database...	1.00	1.00	1.00	12	891	1	0	0	1	0
RFA_00733	s2m links to Rfam database...	1.00	1.00	1.00	12	891	1	0	0	1	0
RFA_00734	s2m links to Rfam database...	0.78	0.75	0.82	9	892	3	0	2	1	3
RFA_00736	s2m links to Rfam database...	1.00	1.00	1.00	12	891	1	0	0	1	0
RFA_00737	s2m links to Rfam database...	1.00	1.00	1.00	12	891	1	0	0	1	0
RFA_00745	s2m links to Rfam database...	1.00	1.00	1.00	12	934	1	0	0	1	0
RFA_00749	s2m links to Rfam database...	1.00	1.00	1.00	12	891	1	0	0	1	0
RFA_00758	s2m links to Rfam database...	0.96	0.92	1.00	11	892	0	0	0	0	1
RFA_00762	s2m links to Rfam database...	0.96	0.92	1.00	11	892	0	0	0	0	1
RFA_00763	s2m links to Rfam database...	1.00	1.00	1.00	12	891	0	0	0	0	0
RFA_00764	s2m links to Rfam database...	1.00	1.00	1.00	12	891	0	0	0	0	0
RFA_00765	s2m links to Rfam database...	1.00	1.00	1.00	12	891	0	0	0	0	0
RFA_00786	Gammaretro_CES links to Rfam database...	0.97	0.94	1.00	30	5020	0	0	0	0	2
RFA_00791	Gammaretro_CES links to Rfam database...	0.94	0.88	1.00	28	5123	1	0	0	1	4
RFA_00792	Gammaretro_CES links to Rfam database...	0.76	0.75	0.77	24	5019	7	2	5	0	8
RFA_00801	Gammaretro_CES links to Rfam database...	0.97	0.94	1.00	30	5020	1	0	0	1	2
SPR_00007	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00009	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	0	0	0	0	0
SPR_00010	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00012	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	0	0	0	0	0
SPR_00013	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	0	0	0	0	0
SPR_00016	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00017	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00025	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	1	0	0	1	0
SPR_00026	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00027	tRNA links to Rfam database...	0.95	0.90	1.00	19	2907	0	0	0	0	2
SPR_00036	tRNA links to Rfam database...	1.00	1.00	1.00	20	2755	0	0	0	0	0
SPR_00045	tRNA links to Rfam database...	0.95	0.95	0.95	21	2828	1	0	1	0	1
SPR_00064	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00065	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00066	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00068	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00070	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00074	tRNA links to Rfam database...	0.84	0.80	0.89	16	2832	2	2	0	0	4
SPR_00079	tRNA links to Rfam database...	0.97	0.95	1.00	18	2467	0	0	0	0	1
SPR_00086	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00087	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	0	0	0	0	0
SPR_00088	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	0	0	0	0	0
SPR_00089	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	0	0	0	0	0
SPR_00090	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	0	0	0	0	0
SPR_00091	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	0	0	0	0	0
SPR_00095	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00111	tRNA links to Rfam database...	0.83	0.81	0.85	17	2681	3	0	3	0	4
SPR_00112	tRNA links to Rfam database...	1.00	1.00	1.00	21	2680	0	0	0	0	0
SPR_00115	tRNA links to Rfam database...	0.87	0.81	0.94	17	2683	1	0	1	0	4
SPR_00117	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00139	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	1	0	0	1	0
SPR_00153	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00155	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00156	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00176	tRNA links to Rfam database...	0.87	0.85	0.89	17	2831	2	2	0	0	3
SPR_00177	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00178	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00191	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00200	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00224	tRNA links to Rfam database...	1.00	1.00	1.00	20	3721	4	0	0	4	0
SPR_00271	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00273	tRNA links to Rfam database...	0.73	0.71	0.75	15	2830	5	0	5	0	6
SPR_00276	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00277	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00294	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00295	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	1	0	0	1	0
SPR_00314	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	1	0	0	1	0
SPR_00315	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	1	0	0	1	0
SPR_00317	tRNA links to Rfam database...	0.80	0.80	0.80	16	2906	4	1	3	0	4
SPR_00318	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	1	0	0	1	0
SPR_00321	tRNA links to Rfam database...	0.76	0.76	0.76	16	2982	5	3	2	0	5
SPR_00333	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	0	0	0	0	0
SPR_00352	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00353	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00357	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00358	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00370	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	0	0	0	0	0
SPR_00386	tRNA links to Rfam database...	1.00	1.00	1.00	20	4166	4	0	0	4	0
SPR_00414	tRNA links to Rfam database...	1.00	1.00	1.00	21	3549	4	0	0	4	0
SPR_00415	tRNA links to Rfam database...	1.00	1.00	1.00	21	3549	4	0	0	4	0
SPR_00417	tRNA links to Rfam database...	0.95	0.95	0.95	21	3548	5	0	1	4	1
SPR_00418	tRNA links to Rfam database...	0.95	0.95	0.95	21	3548	4	0	1	3	1
SPR_00434	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00435	tRNA links to Rfam database...	0.95	0.90	1.00	19	2831	0	0	0	0	2
SPR_00436	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00437	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	0	0	0	0	0
SPR_00438	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	0	0	0	0	0
SPR_00452	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00455	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00456	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00476	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	0	0	0	0	0
SPR_00479	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00482	tRNA links to Rfam database...	1.00	1.00	1.00	21	2680	0	0	0	0	0
SPR_00483	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00487	tRNA links to Rfam database...	0.98	0.95	1.00	21	2680	0	0	0	0	1
SPR_00493	tRNA links to Rfam database...	1.00	1.00	1.00	22	2753	0	0	0	0	0
SPR_00496	tRNA links to Rfam database...	0.98	0.95	1.00	20	2755	0	0	0	0	1
SPR_00497	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	0	0	0	0	0
SPR_00502	tRNA links to Rfam database...	0.87	0.81	0.94	17	2908	1	0	1	0	4
SPR_00504	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	0	0	0	0	0
SPR_00505	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00506	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00509	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00512	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00513	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00518	tRNA links to Rfam database...	0.87	0.80	0.94	16	2909	1	0	1	0	4
SPR_00548	tRNA links to Rfam database...	0.86	0.86	0.86	18	3382	3	3	0	0	3
SPR_00557	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00561	tRNA links to Rfam database...	0.95	0.90	1.00	19	2831	0	0	0	0	2
SPR_00590	tRNA links to Rfam database...	1.00	1.00	1.00	20	2983	0	0	0	0	0
SPR_00593	tRNA links to Rfam database...	0.97	0.95	1.00	18	2757	0	0	0	0	1
SPR_00595	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	0	0	0	0	0
SPR_00598	tRNA links to Rfam database...	1.00	1.00	1.00	21	2982	1	0	0	1	0
SPR_00610	tRNA links to Rfam database...	1.00	1.00	1.00	21	2535	0	0	0	0	0
SPR_00620	tRNA links to Rfam database...	1.00	1.00	1.00	21	2982	1	0	0	1	0
SPR_00721	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00722	tRNA links to Rfam database...	0.80	0.80	0.80	16	2906	4	0	4	0	4
SPR_00758	tRNA links to Rfam database...	1.00	1.00	1.00	21	2982	0	0	0	0	0
SPR_00760	tRNA links to Rfam database...	1.00	1.00	1.00	21	3549	0	0	0	0	0
SPR_00777	tRNA links to Rfam database...	1.00	1.00	1.00	20	2608	1	0	0	1	0
SPR_00867	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00868	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00943	tRNA links to Rfam database...	1.00	1.00	1.00	20	2536	1	0	0	1	0
SPR_00957	tRNA links to Rfam database...	1.00	1.00	1.00	21	2982	1	0	0	1	0
SPR_01040	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	1	0	0	1	0
SPR_01088	tRNA links to Rfam database...	0.98	0.95	1.00	20	2906	0	0	0	0	1
SPR_01095	tRNA links to Rfam database...	0.76	0.76	0.76	16	2829	5	0	5	0	5
SPR_01106	tRNA links to Rfam database...	0.75	0.71	0.79	15	2537	4	1	3	0	6
SPR_01117	tRNA links to Rfam database...	0.54	0.57	0.52	12	2980	11	1	10	0	9
SPR_01157	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	0	0	0	0	0
SRP_00020	Bacteria_small_SRP links to Rfam database...	1.00	1.00	1.00	33	5532	0	0	0	0	0
SRP_00038	Bacteria_small_SRP links to Rfam database...	1.00	1.00	1.00	33	5017	0	0	0	0	0
SRP_00042	Bacteria_small_SRP links to Rfam database...	1.00	1.00	1.00	25	3980	1	0	0	1	0
SRP_00046	Bacteria_small_SRP links to Rfam database...	1.00	1.00	1.00	32	4721	0	0	0	0	0
SRP_00051	Bacteria_small_SRP links to Rfam database...	0.97	0.97	0.97	29	5430	3	0	1	2	1
SRP_00054	Bacteria_small_SRP links to Rfam database...	1.00	1.00	1.00	32	5533	0	0	0	0	0
SRP_00057	Bacteria_small_SRP links to Rfam database...	0.81	0.77	0.84	27	6296	6	1	4	1	8
SRP_00058	Bacteria_small_SRP links to Rfam database...	1.00	1.00	1.00	34	5744	3	0	0	3	0
SRP_00072	Bacteria_small_SRP links to Rfam database...	1.00	1.00	1.00	29	6299	1	0	0	1	0
SRP_00074	Bacteria_small_SRP links to Rfam database...	0.75	0.79	0.72	23	6523	14	2	7	5	6
SRP_00077	Bacteria_small_SRP links to Rfam database...	0.81	0.81	0.81	30	6633	7	0	7	0	7
SRP_00081	Bacteria_small_SRP links to Rfam database...	0.70	0.71	0.69	22	5533	10	0	10	0	9
SRP_00084	Bacteria_small_SRP links to Rfam database...	1.00	1.00	1.00	34	5426	0	0	0	0	0
SRP_00094	Bacteria_small_SRP links to Rfam database...	0.90	0.92	0.88	22	4070	3	0	3	0	2
SRP_00095	Bacteria_small_SRP links to Rfam database...	0.90	0.92	0.88	23	3979	3	0	3	0	2
SRP_00098	Bacteria_small_SRP links to Rfam database...	0.88	0.89	0.87	33	6403	6	0	5	1	4
SRP_00107	Bacteria_small_SRP links to Rfam database...	0.40	0.47	0.35	9	3629	19	4	13	2	10
SRP_00121	Bacteria_small_SRP links to Rfam database...	0.92	0.92	0.92	23	4253	3	0	2	1	2
SRP_00128	Bacteria_small_SRP links to Rfam database...	0.80	0.83	0.77	30	6747	9	0	9	0	6
SRP_00132	Bacteria_small_SRP links to Rfam database...	0.73	0.76	0.71	22	4820	10	0	9	1	7
SRP_00134	Bacteria_large_SRP links to Rfam database...	0.69	0.72	0.66	21	5963	15	3	8	4	8
SRP_00141	Bacteria_small_SRP links to Rfam database...	0.99	0.98	1.00	40	6288	0	0	0	0	1
SRP_00161	Bacteria_small_SRP links to Rfam database...	0.79	0.77	0.81	17	2829	4	0	4	0	5
SRP_00162	Bacteria_small_SRP links to Rfam database...	1.00	1.00	1.00	23	2903	1	0	0	1	0
SRP_00163	Bacteria_small_SRP links to Rfam database...	0.98	0.96	1.00	25	3461	0	0	0	0	1
SRP_00164	Bacteria_small_SRP links to Rfam database...	1.00	1.00	1.00	35	6868	0	0	0	0	0
SRP_00170	Bacteria_small_SRP links to Rfam database...	1.00	1.00	1.00	25	4070	1	0	0	1	0
SRP_00194	Bacteria_small_SRP links to Rfam database...	0.77	0.81	0.74	17	3217	6	0	6	0	4
SRP_00209	Bacteria_small_SRP links to Rfam database...	0.84	0.85	0.82	23	4628	5	0	5	0	4
SRP_00213	Bacteria_small_SRP links to Rfam database...	1.00	1.00	1.00	25	4161	0	0	0	0	0
SRP_00215	Bacteria_small_SRP links to Rfam database...	0.88	0.88	0.88	22	3215	3	1	2	0	3
SRP_00227	Bacteria_small_SRP links to Rfam database...	0.97	0.94	1.00	29	5122	0	0	0	0	2
SRP_00231	Bacteria_small_SRP links to Rfam database...	0.99	0.97	1.00	33	5427	0	0	0	0	1
SRP_00243	Bacteria_small_SRP links to Rfam database...	0.95	0.90	1.00	28	5123	1	0	0	1	3
SRP_00244	Bacteria_small_SRP links to Rfam database...	0.99	0.97	1.00	38	6865	1	0	0	1	1
SRP_00250	Bacteria_small_SRP links to Rfam database...	0.84	0.86	0.82	31	6748	8	0	7	1	5
SRP_00251	Bacteria_small_SRP links to Rfam database...	0.78	0.81	0.76	29	6983	9	0	9	0	7
SRP_00266	Bacteria_small_SRP links to Rfam database...	0.67	0.59	0.77	17	4634	5	0	5	0	12
SRP_00268	Bacteria_small_SRP links to Rfam database...	1.00	1.00	1.00	27	4159	0	0	0	0	0
SRP_00269	Bacteria_small_SRP links to Rfam database...	0.94	0.88	1.00	29	5021	0	0	0	0	4
SRP_00270	Bacteria_small_SRP links to Rfam database...	1.00	1.00	1.00	31	4625	0	0	0	0	0
SRP_00271	Bacteria_small_SRP links to Rfam database...	0.91	0.83	1.00	20	3220	0	0	0	0	4
SRP_00273	Bacteria_small_SRP links to Rfam database...	1.00	1.00	1.00	40	6746	0	0	0	0	0
SRP_00274	Bacteria_small_SRP links to Rfam database...	1.00	1.00	1.00	38	6865	0	0	0	0	0
SRP_00303	Bacteria_small_SRP links to Rfam database...	0.88	0.91	0.85	29	6636	5	0	5	0	3
SRP_00310	Bacteria_small_SRP links to Rfam database...	0.98	0.96	1.00	22	2904	1	0	0	1	1
SRP_00312	Bacteria_small_SRP links to Rfam database...	0.91	0.93	0.89	25	4158	3	0	3	0	2
SRP_00318	Bacteria_small_SRP links to Rfam database...	1.00	1.00	1.00	23	2980	0	0	0	0	0
SRP_00325	Bacteria_small_SRP links to Rfam database...	1.00	1.00	1.00	33	4338	0	0	0	0	0
SRP_00333	Bacteria_small_SRP links to Rfam database...	0.91	0.91	0.91	31	5117	3	0	3	0	3
SRP_00338	Bacteria_small_SRP links to Rfam database...	0.96	0.94	0.97	34	5425	1	0	1	0	2
SRP_00341	Bacteria_small_SRP links to Rfam database...	0.73	0.74	0.72	23	4721	9	0	9	0	8
SRP_00342	Bacteria_small_SRP links to Rfam database...	0.68	0.68	0.68	17	3980	10	1	7	2	8
SRP_00350	Bacteria_small_SRP links to Rfam database...	1.00	1.00	1.00	27	3889	0	0	0	0	0
SRP_00356	Bacteria_small_SRP links to Rfam database...	0.95	0.93	0.97	28	5021	1	0	1	0	2
SRP_00357	Bacteria_small_SRP links to Rfam database...	1.00	1.00	1.00	36	5320	0	0	0	0	0
SRP_00358	Bacteria_small_SRP links to Rfam database...	0.97	0.97	0.97	34	6293	1	0	1	0	1
SRP_00367	Bacteria_small_SRP links to Rfam database...	1.00	1.00	1.00	35	6751	0	0	0	0	0
SRP_00369	Bacteria_small_SRP links to Rfam database...	1.00	1.00	1.00	35	5743	0	0	0	0	0
SRP_00383	Bacteria_small_SRP links to Rfam database...	0.85	0.83	0.87	20	3217	4	0	3	1	4

^top

Performance of Multilign(20) - scored lower in this pairwise comparison

1. Total counts & total scores for Multilign(20)

Total Base Pair Counts
Total TP	5476
Total TN	1243743
Total FP	1072
Total FP CONTRA	65
Total FP INCONS	646
Total FP COMP	361
Total FN	2382

Total Scores
MCC	0.784
Average MCC ± 95% Confidence Intervals	0.750 ± 0.035
Sensitivity	0.697
Positive Predictive Value	0.885
Nr of predictions	311

^top

2. Individual counts for Multilign(20) [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
CRW_00548	5S_rRNA links to Rfam database...	0.84	0.76	0.94	29	7350	2	0	2	0	9
CRW_00552	5S_rRNA links to Rfam database...	0.95	0.90	1.00	35	7105	2	0	0	2	4
CRW_00555	5S_rRNA links to Rfam database...	0.91	0.83	1.00	33	7593	0	0	0	0	7
CRW_00567	5S_rRNA links to Rfam database...	0.96	0.93	1.00	37	7466	3	0	0	3	3
CRW_00570	5S_rRNA links to Rfam database...	0.88	0.86	0.89	32	6867	7	0	4	3	5
CRW_00573	5S_rRNA links to Rfam database...	0.74	0.70	0.78	28	7104	8	0	8	0	12
CRW_01484	5S_rRNA links to Rfam database...	0.89	0.79	1.00	31	7472	1	0	0	1	8
CRW_01485	5S_rRNA links to Rfam database...	0.84	0.77	0.91	30	7470	4	0	3	1	9
CRW_01487	5S_rRNA links to Rfam database...	0.91	0.83	1.00	34	7469	1	0	0	1	7
CRW_01489	5S_rRNA links to Rfam database...	0.86	0.79	0.94	31	7470	3	0	2	1	8
CRW_01491	5S_rRNA links to Rfam database...	0.73	0.63	0.84	27	8353	7	0	5	2	16
CRW_01492	5S_rRNA links to Rfam database...	0.79	0.76	0.82	32	7587	9	0	7	2	10
CRW_01494	5S_rRNA links to Rfam database...	0.87	0.80	0.94	32	7106	2	0	2	0	8
CRW_01497	5S_rRNA links to Rfam database...	0.88	0.83	0.94	33	7105	3	0	2	1	7
CRW_01498	5S_rRNA links to Rfam database...	0.85	0.77	0.94	33	8093	3	0	2	1	10
CRW_01499	5S_rRNA links to Rfam database...	0.58	0.54	0.63	22	7966	13	3	10	0	19
CRW_01500	5S_rRNA links to Rfam database...	0.92	0.84	1.00	32	7718	3	0	0	3	6
CRW_01501	5S_rRNA links to Rfam database...	0.86	0.80	0.92	36	8476	3	0	3	0	9
CRW_01508	5S_rRNA links to Rfam database...	0.95	0.90	1.00	38	7963	2	0	0	2	4
CRW_01532	5S_rRNA links to Rfam database...	0.77	0.76	0.78	28	7104	11	0	8	3	9
CRW_01533	5S_rRNA links to Rfam database...	0.92	0.89	0.94	33	7105	3	0	2	1	4
CRW_01534	5S_rRNA links to Rfam database...	0.86	0.81	0.91	30	7107	5	0	3	2	7
CRW_01535	5S_rRNA links to Rfam database...	0.92	0.89	0.94	33	7105	4	0	2	2	4
CRW_01536	5S_rRNA links to Rfam database...	0.88	0.86	0.89	32	6985	4	0	4	0	5
CRW_01537	5S_rRNA links to Rfam database...	0.56	0.49	0.64	18	7112	12	0	10	2	19
CRW_01539	5S_rRNA links to Rfam database...	0.80	0.76	0.85	28	7107	8	0	5	3	9
CRW_01540	5S_rRNA links to Rfam database...	0.93	0.89	0.97	33	7106	3	0	1	2	4
CRW_01541	5S_rRNA links to Rfam database...	0.89	0.84	0.94	31	7107	4	0	2	2	6
CRW_01542	5S_rRNA links to Rfam database...	0.94	0.89	1.00	33	7107	1	0	0	1	4
CRW_01544	5S_rRNA links to Rfam database...	0.88	0.86	0.89	32	7104	9	0	4	5	5
CRW_01548	5S_rRNA links to Rfam database...	0.90	0.86	0.94	32	6987	3	0	2	1	5
CRW_01555	5S_rRNA links to Rfam database...	0.79	0.76	0.82	28	9011	9	0	6	3	9
CRW_01556	5S_rRNA links to Rfam database...	0.90	0.86	0.94	32	7106	4	0	2	2	5
CRW_01557	5S_rRNA links to Rfam database...	0.79	0.78	0.81	29	7104	13	0	7	6	8
CRW_01559	5S_rRNA links to Rfam database...	0.82	0.78	0.85	29	7226	10	0	5	5	8
CRW_01562	5S_rRNA links to Rfam database...	0.83	0.78	0.88	29	7107	7	0	4	3	8
CRW_01563	5S_rRNA links to Rfam database...	0.87	0.81	0.94	30	6871	2	0	2	0	7
CRW_01566	5S_rRNA links to Rfam database...	0.86	0.81	0.91	30	7107	4	0	3	1	7
CRW_01568	5S_rRNA links to Rfam database...	0.78	0.78	0.78	29	7103	11	0	8	3	8
CRW_01569	5S_rRNA links to Rfam database...	0.79	0.78	0.81	29	7104	10	0	7	3	8
CRW_01570	5S_rRNA links to Rfam database...	0.89	0.86	0.91	32	7105	7	0	3	4	5
CRW_01572	5S_rRNA links to Rfam database...	0.75	0.68	0.83	25	6991	9	0	5	4	12
CRW_01573	5S_rRNA links to Rfam database...	0.92	0.89	0.94	33	7225	3	0	2	1	4
CRW_01578	5S_rRNA links to Rfam database...	0.92	0.89	0.94	33	7105	6	0	2	4	4
CRW_01580	5S_rRNA links to Rfam database...	0.78	0.76	0.80	28	7105	10	0	7	3	9
CRW_01581	5S_rRNA links to Rfam database...	0.62	0.54	0.71	20	7112	9	0	8	1	17
CRW_01583	5S_rRNA links to Rfam database...	0.88	0.78	1.00	29	7111	1	0	0	1	8
CRW_01584	5S_rRNA links to Rfam database...	0.90	0.86	0.94	32	7106	4	0	2	2	5
CRW_01590	5S_rRNA links to Rfam database...	0.74	0.65	0.86	24	7112	7	0	4	3	13
CRW_01593	5S_rRNA links to Rfam database...	0.79	0.78	0.81	29	7104	9	0	7	2	8
CRW_01595	5S_rRNA links to Rfam database...	0.89	0.86	0.91	32	8480	5	0	3	2	5
CRW_01599	5S_rRNA links to Rfam database...	0.90	0.89	0.92	33	7104	5	0	3	2	4
CRW_01603	5S_rRNA links to Rfam database...	0.72	0.59	0.88	22	7115	6	0	3	3	15
CRW_01605	5S_rRNA links to Rfam database...	0.84	0.78	0.91	29	7108	7	0	3	4	8
CRW_01606	5S_rRNA links to Rfam database...	0.77	0.62	0.96	23	7116	2	0	1	1	14
CRW_01608	5S_rRNA links to Rfam database...	0.87	0.81	0.94	30	8353	5	0	2	3	7
CRW_01616	5S_rRNA links to Rfam database...	0.92	0.86	0.97	32	7107	3	0	1	2	5
CRW_01617	5S_rRNA links to Rfam database...	0.92	0.89	0.94	33	7105	3	0	2	1	4
CRW_01620	5S_rRNA links to Rfam database...	0.90	0.89	0.92	33	6985	5	0	3	2	4
CRW_01621	5S_rRNA links to Rfam database...	0.68	0.68	0.69	25	7104	12	0	11	1	12
CRW_01623	5S_rRNA links to Rfam database...	0.90	0.86	0.94	32	7106	4	0	2	2	5
CRW_01625	5S_rRNA links to Rfam database...	0.89	0.86	0.91	32	7105	6	0	3	3	5
PDB_00012	mir-TAR links to Rfam database...	1.00	1.00	1.00	7	399	3	0	0	3	0
PDB_00070	tRNA links to Rfam database...	0.93	0.88	1.00	21	2829	0	0	0	0	3
PDB_00213	Gammaretro_CES links to Rfam database...	0.86	0.78	0.94	32	5016	2	0	2	0	9
PDB_00229	tRNA links to Rfam database...	0.96	0.91	1.00	21	2754	0	0	0	0	2
PDB_00327	tRNA links to Rfam database...	0.96	0.91	1.00	21	3060	0	0	0	0	2
PDB_00362	tRNA links to Rfam database...	0.98	0.95	1.00	21	2829	0	0	0	0	1
PDB_00402	tRNA links to Rfam database...	0.84	0.83	0.86	19	2753	3	0	3	0	4
PDB_00431	tRNA links to Rfam database...	0.97	0.95	1.00	19	2192	1	0	0	1	1
PDB_00474	tRNA links to Rfam database...	0.96	0.91	1.00	21	2680	0	0	0	0	2
PDB_00553	mir-TAR links to Rfam database...	1.00	1.00	1.00	11	454	0	0	0	0	0
PDB_00571	tRNA links to Rfam database...	0.85	0.76	0.95	19	3301	1	1	0	0	6
PDB_00667	tRNA links to Rfam database...	0.95	0.91	1.00	20	2830	1	0	0	1	2
PDB_00741	Entero_5_CRE links to Rfam database...	0.87	0.76	1.00	13	690	0	0	0	0	4
PDB_00810	s2m links to Rfam database...	0.67	0.59	0.77	10	1068	3	0	3	0	7
PDB_00828	Purine links to Rfam database...	0.88	0.78	1.00	21	2464	0	0	0	0	6
PDB_00829	Purine links to Rfam database...	0.86	0.75	1.00	18	2260	2	0	0	2	6
PDB_00876	HIV_FE links to Rfam database...	0.97	0.95	1.00	19	971	0	0	0	0	1
PDB_01002	tRNA links to Rfam database...	0.95	0.90	1.00	19	2756	2	0	0	2	2
PDB_01020	Purine links to Rfam database...	0.86	0.74	1.00	17	2261	3	0	0	3	6
PDB_01050	UnaL2 links to Rfam database...	0.92	0.85	1.00	11	619	2	0	0	2	2
PDB_01053	tRNA links to Rfam database...	0.97	0.94	1.00	15	1363	0	0	0	0	1
PDB_01073	SAM links to Rfam database...	0.86	0.74	1.00	25	4346	1	0	0	1	9
PDB_01114	TPP links to Rfam database...	0.42	0.37	0.48	10	2829	11	1	10	0	17
PDB_01152	HIV_FS2 links to Rfam database...	0.88	0.79	1.00	11	550	0	0	0	0	3
PDB_01236	ykoK links to Rfam database...	0.88	0.81	0.96	44	11582	3	0	2	1	10
RFA_00389	Hammerhead_3 links to Rfam database...	0.70	0.60	0.82	9	1420	4	0	2	2	6
RFA_00390	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00391	Hammerhead_3 links to Rfam database...	0.57	0.47	0.70	7	1421	4	0	3	1	8
RFA_00396	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	2	0	0	2	1
RFA_00402	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	0	0	0	0	0
RFA_00409	Hammerhead_3 links to Rfam database...	0.70	0.60	0.82	9	1420	4	0	2	2	6
RFA_00416	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1470	2	0	0	2	0
RFA_00433	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00434	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00436	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00440	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1470	2	0	0	2	0
RFA_00442	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00444	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1525	1	0	0	1	0
RFA_00583	Y_RNA links to Rfam database...	0.51	0.53	0.50	8	4934	23	0	8	15	7
RFA_00584	Y_RNA links to Rfam database...	0.87	0.87	0.87	13	2911	14	0	2	12	2
RFA_00585	Y_RNA links to Rfam database...	0.93	0.93	0.93	14	4836	15	0	1	14	1
RFA_00586	Y_RNA links to Rfam database...	0.97	0.93	1.00	14	3902	12	0	0	12	1
RFA_00587	Y_RNA links to Rfam database...	0.93	0.93	0.93	14	4836	15	0	1	14	1
RFA_00588	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4545	10	0	0	10	0
RFA_00589	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4356	17	0	0	17	0
RFA_00594	Y_RNA links to Rfam database...	0.83	0.80	0.86	12	2761	14	0	2	12	3
RFA_00596	Y_RNA links to Rfam database...	0.74	0.67	0.83	10	5983	18	0	2	16	5
RFA_00658	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	1128	0	0	0	0	14
RFA_00664	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	990	0	0	0	0	14
RFA_00667	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	990	0	0	0	0	14
RFA_00668	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	990	0	0	0	0	14
RFA_00672	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	903	0	0	0	0	13
RFA_00673	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	1128	0	0	0	0	14
RFA_00674	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	1128	0	0	0	0	14
RFA_00675	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	990	0	0	0	0	14
RFA_00677	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	990	0	0	0	0	14
RFA_00678	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	946	0	0	0	0	14
RFA_00680	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	1128	0	0	0	0	14
RFA_00704	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	990	0	0	0	0	14
RFA_00707	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	1035	0	0	0	0	14
RFA_00715	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	946	0	0	0	0	14
RFA_00717	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	903	0	0	0	0	14
RFA_00730	s2m links to Rfam database...	0.69	0.67	0.73	8	892	4	1	2	1	4
RFA_00731	s2m links to Rfam database...	1.00	1.00	1.00	12	891	1	0	0	1	0
RFA_00733	s2m links to Rfam database...	1.00	1.00	1.00	12	891	1	0	0	1	0
RFA_00734	s2m links to Rfam database...	0.78	0.75	0.82	9	892	3	0	2	1	3
RFA_00736	s2m links to Rfam database...	0.69	0.67	0.73	8	892	4	1	2	1	4
RFA_00737	s2m links to Rfam database...	0.73	0.67	0.80	8	893	3	0	2	1	4
RFA_00745	s2m links to Rfam database...	0.69	0.67	0.73	8	935	4	1	2	1	4
RFA_00749	s2m links to Rfam database...	0.69	0.67	0.73	8	892	4	1	2	1	4
RFA_00758	s2m links to Rfam database...	0.63	0.58	0.70	7	893	3	1	2	0	5
RFA_00762	s2m links to Rfam database...	0.69	0.67	0.73	8	892	3	0	3	0	4
RFA_00763	s2m links to Rfam database...	1.00	1.00	1.00	12	891	0	0	0	0	0
RFA_00764	s2m links to Rfam database...	0.69	0.67	0.73	8	892	4	1	2	1	4
RFA_00765	s2m links to Rfam database...	0.91	0.83	1.00	10	893	1	0	0	1	2
RFA_00786	Gammaretro_CES links to Rfam database...	0.64	0.66	0.64	21	5017	12	2	10	0	11
RFA_00791	Gammaretro_CES links to Rfam database...	0.89	0.84	0.93	27	5122	3	0	2	1	5
RFA_00792	Gammaretro_CES links to Rfam database...	0.94	0.94	0.94	30	5018	4	0	2	2	2
RFA_00801	Gammaretro_CES links to Rfam database...	0.81	0.78	0.83	25	5020	6	0	5	1	7
SPR_00007	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00009	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	0	0	0	0	0
SPR_00010	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00012	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	0	0	0	0	0
SPR_00013	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	0	0	0	0	0
SPR_00016	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00017	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00025	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	1	0	0	1	0
SPR_00026	tRNA links to Rfam database...	0.73	0.76	0.70	16	2903	7	0	7	0	5
SPR_00027	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	1	0	0	1	0
SPR_00036	tRNA links to Rfam database...	1.00	1.00	1.00	20	2755	1	0	0	1	0
SPR_00045	tRNA links to Rfam database...	0.93	0.91	0.95	20	2829	1	0	1	0	2
SPR_00064	tRNA links to Rfam database...	0.65	0.43	1.00	9	2841	0	0	0	0	12
SPR_00065	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00066	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00068	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00070	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00074	tRNA links to Rfam database...	0.97	0.95	1.00	19	2831	1	0	0	1	1
SPR_00079	tRNA links to Rfam database...	1.00	1.00	1.00	19	2466	0	0	0	0	0
SPR_00086	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00087	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	0	0	0	0	0
SPR_00088	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	0	0	0	0	0
SPR_00089	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	0	0	0	0	0
SPR_00090	tRNA links to Rfam database...	0.85	0.85	0.85	17	2830	3	0	3	0	3
SPR_00091	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	0	0	0	0	0
SPR_00095	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00111	tRNA links to Rfam database...	1.00	1.00	1.00	21	2680	0	0	0	0	0
SPR_00112	tRNA links to Rfam database...	1.00	1.00	1.00	21	2680	1	0	0	1	0
SPR_00115	tRNA links to Rfam database...	1.00	1.00	1.00	21	2680	0	0	0	0	0
SPR_00117	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	2	0	0	2	0
SPR_00139	tRNA links to Rfam database...	0.98	0.95	1.00	20	2906	1	0	0	1	1
SPR_00153	tRNA links to Rfam database...	0.98	0.95	1.00	20	2906	0	0	0	0	1
SPR_00155	tRNA links to Rfam database...	0.98	0.95	1.00	20	2906	0	0	0	0	1
SPR_00156	tRNA links to Rfam database...	0.98	0.95	1.00	20	2906	0	0	0	0	1
SPR_00176	tRNA links to Rfam database...	0.95	0.90	1.00	18	2832	0	0	0	0	2
SPR_00177	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00178	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00191	tRNA links to Rfam database...	0.95	0.95	0.95	20	2829	1	0	1	0	1
SPR_00200	tRNA links to Rfam database...	0.81	0.81	0.81	17	2829	4	0	4	0	4
SPR_00224	tRNA links to Rfam database...	1.00	1.00	1.00	20	3721	5	0	0	5	0
SPR_00271	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00273	tRNA links to Rfam database...	0.76	0.76	0.76	16	2829	5	0	5	0	5
SPR_00276	tRNA links to Rfam database...	0.98	0.95	1.00	20	2906	0	0	0	0	1
SPR_00277	tRNA links to Rfam database...	0.98	0.95	1.00	20	2906	0	0	0	0	1
SPR_00294	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00295	tRNA links to Rfam database...	0.98	0.95	1.00	20	2755	1	0	0	1	1
SPR_00314	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	2	0	0	2	0
SPR_00315	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	1	0	0	1	0
SPR_00317	tRNA links to Rfam database...	0.76	0.80	0.73	16	2904	6	1	5	0	4
SPR_00318	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	2	0	0	2	0
SPR_00321	tRNA links to Rfam database...	1.00	1.00	1.00	21	2982	0	0	0	0	0
SPR_00333	tRNA links to Rfam database...	0.98	0.95	1.00	20	2755	0	0	0	0	1
SPR_00352	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00353	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00357	tRNA links to Rfam database...	0.98	0.95	1.00	20	2906	0	0	0	0	1
SPR_00358	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00370	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	0	0	0	0	0
SPR_00386	tRNA links to Rfam database...	0.75	0.75	0.75	15	4166	9	0	5	4	5
SPR_00414	tRNA links to Rfam database...	0.59	0.62	0.57	13	3547	10	7	3	0	8
SPR_00415	tRNA links to Rfam database...	0.95	0.90	1.00	19	3551	4	0	0	4	2
SPR_00417	tRNA links to Rfam database...	0.98	0.95	1.00	21	3549	4	0	0	4	1
SPR_00418	tRNA links to Rfam database...	0.58	0.55	0.63	12	3551	11	0	7	4	10
SPR_00434	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00435	tRNA links to Rfam database...	0.76	0.76	0.76	16	2829	5	0	5	0	5
SPR_00436	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	1	0	0	1	1
SPR_00437	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	1	0	0	1	0
SPR_00438	tRNA links to Rfam database...	0.98	0.95	1.00	20	2755	0	0	0	0	1
SPR_00452	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00455	tRNA links to Rfam database...	0.73	0.76	0.70	16	2827	7	0	7	0	5
SPR_00456	tRNA links to Rfam database...	0.73	0.76	0.70	16	2827	7	1	6	0	5
SPR_00476	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	0	0	0	0	0
SPR_00479	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00482	tRNA links to Rfam database...	0.48	0.33	0.70	7	2691	3	0	3	0	14
SPR_00483	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00487	tRNA links to Rfam database...	0.70	0.68	0.71	15	2680	6	0	6	0	7
SPR_00493	tRNA links to Rfam database...	0.70	0.68	0.71	15	2754	6	2	4	0	7
SPR_00496	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	0	0	0	0	0
SPR_00497	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	0	0	0	0	0
SPR_00502	tRNA links to Rfam database...	0.83	0.81	0.85	17	2906	3	0	3	0	4
SPR_00504	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	0	0	0	0	0
SPR_00505	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00506	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00509	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00512	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00513	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00518	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00548	tRNA links to Rfam database...	0.84	0.86	0.82	18	3381	4	0	4	0	3
SPR_00557	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00561	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00590	tRNA links to Rfam database...	1.00	1.00	1.00	20	2983	0	0	0	0	0
SPR_00593	tRNA links to Rfam database...	0.95	0.89	1.00	17	2758	0	0	0	0	2
SPR_00595	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	0	0	0	0	0
SPR_00598	tRNA links to Rfam database...	0.58	0.57	0.60	12	2983	9	0	8	1	9
SPR_00610	tRNA links to Rfam database...	0.81	0.81	0.81	17	2535	5	0	4	1	4
SPR_00620	tRNA links to Rfam database...	0.57	0.57	0.57	12	2982	10	3	6	1	9
SPR_00721	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00722	tRNA links to Rfam database...	0.80	0.80	0.80	16	2906	4	0	4	0	4
SPR_00758	tRNA links to Rfam database...	0.74	0.76	0.73	16	2981	6	0	6	0	5
SPR_00760	tRNA links to Rfam database...	1.00	1.00	1.00	21	3549	0	0	0	0	0
SPR_00777	tRNA links to Rfam database...	0.92	0.90	0.95	18	2609	2	0	1	1	2
SPR_00867	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00868	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00943	tRNA links to Rfam database...	1.00	1.00	1.00	20	2536	0	0	0	0	0
SPR_00957	tRNA links to Rfam database...	0.79	0.81	0.77	17	2981	6	0	5	1	4
SPR_01040	tRNA links to Rfam database...	0.95	0.95	0.95	20	2754	2	0	1	1	1
SPR_01088	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_01095	tRNA links to Rfam database...	0.76	0.76	0.76	16	2829	6	0	5	1	5
SPR_01106	tRNA links to Rfam database...	0.98	0.95	1.00	20	2536	2	0	0	2	1
SPR_01117	tRNA links to Rfam database...	0.76	0.76	0.76	16	2982	6	0	5	1	5
SPR_01157	tRNA links to Rfam database...	0.83	0.81	0.85	17	2755	4	0	3	1	4
SRP_00020	Bacteria_small_SRP links to Rfam database...	0.29	0.15	0.56	5	5556	4	0	4	0	28
SRP_00038	Bacteria_small_SRP links to Rfam database...	0.89	0.85	0.93	28	5020	2	0	2	0	5
SRP_00042	Bacteria_small_SRP links to Rfam database...	0.36	0.24	0.55	6	3994	6	1	4	1	19
SRP_00046	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	4753	0	0	0	0	32
SRP_00051	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	5450	10	0	10	0	30
SRP_00054	Bacteria_small_SRP links to Rfam database...	0.47	0.22	1.00	7	5558	0	0	0	0	25
SRP_00057	Bacteria_small_SRP links to Rfam database...	0.34	0.20	0.58	7	6316	5	1	4	0	28
SRP_00058	Bacteria_small_SRP links to Rfam database...	0.73	0.68	0.79	23	5749	6	1	5	0	11
SRP_00072	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6318	10	0	10	0	29
SRP_00074	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6543	12	0	12	0	29
SRP_00077	Bacteria_small_SRP links to Rfam database...	0.57	0.32	1.00	12	6658	0	0	0	0	25
SRP_00081	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	5555	10	2	8	0	31
SRP_00084	Bacteria_small_SRP links to Rfam database...	0.36	0.21	0.64	7	5449	4	0	4	0	27
SRP_00094	Bacteria_small_SRP links to Rfam database...	0.73	0.75	0.72	18	4070	7	1	6	0	6
SRP_00095	Bacteria_small_SRP links to Rfam database...	0.30	0.28	0.33	7	3984	14	4	10	0	18
SRP_00098	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6430	11	1	10	0	37
SRP_00107	Bacteria_small_SRP links to Rfam database...	0.27	0.32	0.24	6	3630	21	4	15	2	13
SRP_00121	Bacteria_small_SRP links to Rfam database...	0.60	0.40	0.91	10	4267	1	0	1	0	15
SRP_00128	Bacteria_small_SRP links to Rfam database...	0.14	0.08	0.25	3	6774	9	0	9	0	33
SRP_00132	Bacteria_small_SRP links to Rfam database...	0.28	0.17	0.45	5	4840	7	0	6	1	24
SRP_00134	Bacteria_large_SRP links to Rfam database...	0.51	0.55	0.48	16	5962	23	3	14	6	13
SRP_00141	Bacteria_small_SRP links to Rfam database...	0.65	0.51	0.84	21	6303	4	1	3	0	20
SRP_00161	Bacteria_small_SRP links to Rfam database...	0.71	0.50	1.00	11	2839	0	0	0	0	11
SRP_00162	Bacteria_small_SRP links to Rfam database...	0.87	0.87	0.87	20	2903	4	0	3	1	3
SRP_00163	Bacteria_small_SRP links to Rfam database...	0.52	0.27	1.00	7	3479	0	0	0	0	19
SRP_00164	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6892	11	2	9	0	35
SRP_00170	Bacteria_small_SRP links to Rfam database...	0.70	0.56	0.88	14	4079	3	1	1	1	11
SRP_00194	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	3240	0	0	0	0	21
SRP_00209	Bacteria_small_SRP links to Rfam database...	0.20	0.19	0.23	5	4634	17	4	13	0	22
SRP_00213	Bacteria_small_SRP links to Rfam database...	0.54	0.36	0.82	9	4175	2	0	2	0	16
SRP_00215	Bacteria_small_SRP links to Rfam database...	0.53	0.32	0.89	8	3231	1	0	1	0	17
SRP_00227	Bacteria_small_SRP links to Rfam database...	0.94	0.94	0.94	29	5120	2	1	1	0	2
SRP_00231	Bacteria_small_SRP links to Rfam database...	0.46	0.26	0.82	9	5449	2	0	2	0	25
SRP_00243	Bacteria_small_SRP links to Rfam database...	0.47	0.23	1.00	7	5144	0	0	0	0	24
SRP_00244	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6892	11	1	10	0	39
SRP_00250	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6786	0	0	0	0	36
SRP_00251	Bacteria_small_SRP links to Rfam database...	0.77	0.67	0.89	24	6994	3	1	2	0	12
SRP_00266	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	4656	0	0	0	0	29
SRP_00268	Bacteria_small_SRP links to Rfam database...	0.93	0.93	0.93	25	4159	2	1	1	0	2
SRP_00269	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	5043	7	1	6	0	33
SRP_00270	Bacteria_small_SRP links to Rfam database...	0.80	0.65	1.00	20	4636	0	0	0	0	11
SRP_00271	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	3240	0	0	0	0	24
SRP_00273	Bacteria_small_SRP links to Rfam database...	0.55	0.30	1.00	12	6774	0	0	0	0	28
SRP_00274	Bacteria_small_SRP links to Rfam database...	0.95	0.95	0.95	36	6865	2	1	1	0	2
SRP_00303	Bacteria_small_SRP links to Rfam database...	0.31	0.09	1.00	3	6667	0	0	0	0	29
SRP_00310	Bacteria_small_SRP links to Rfam database...	0.84	0.83	0.86	19	2904	4	0	3	1	4
SRP_00312	Bacteria_small_SRP links to Rfam database...	0.77	0.67	0.90	18	4166	2	1	1	0	9
SRP_00318	Bacteria_small_SRP links to Rfam database...	0.62	0.39	1.00	9	2994	0	0	0	0	14
SRP_00325	Bacteria_small_SRP links to Rfam database...	0.70	0.58	0.86	19	4349	3	0	3	0	14
SRP_00333	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	5151	0	0	0	0	34
SRP_00338	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	5460	0	0	0	0	36
SRP_00341	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	4741	12	3	9	0	31
SRP_00342	Bacteria_small_SRP links to Rfam database...	0.46	0.28	0.78	7	3996	4	0	2	2	18
SRP_00350	Bacteria_small_SRP links to Rfam database...	0.39	0.26	0.58	7	3904	5	0	5	0	20
SRP_00356	Bacteria_small_SRP links to Rfam database...	0.58	0.37	0.92	11	5038	1	0	1	0	19
SRP_00357	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	5356	0	0	0	0	36
SRP_00358	Bacteria_small_SRP links to Rfam database...	0.32	0.14	0.71	5	6321	2	1	1	0	30
SRP_00367	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6775	11	1	10	0	35
SRP_00369	Bacteria_small_SRP links to Rfam database...	0.58	0.34	1.00	12	5766	0	0	0	0	23
SRP_00383	Bacteria_small_SRP links to Rfam database...	0.54	0.29	1.00	7	3233	0	0	0	0	17

^top

Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.

Table of contents:

Overview

Performance plots

Performance of ContextFold - scored higher in this pairwise comparison

1. Total counts & total scores for ContextFold

2. Individual counts for ContextFold [ download as .csv ]

Performance of Multilign(20) - scored lower in this pairwise comparison

1. Total counts & total scores for Multilign(20)

2. Individual counts for Multilign(20) [ download as .csv ]