CompaRNA - on-line benchmarks of RNA structure prediction methods

Laboratory of Structural Bioinformatics @ Adam Mickiewicz University in Poznan

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Overview

Metric	Contrafold		Afold
MCC	0.609	>	0.558
Average MCC ± 95% Confidence Intervals	0.639 ± 0.031	>	0.596 ± 0.030
Sensitivity	0.592	>	0.541
Positive Predictive Value	0.631	>	0.582
Total TP	6710	>	6136
Total TN	1569732	<	1569813
Total FP	4677	<	5149
Total FP CONTRA	406	<	465
Total FP INCONS	3514	<	3948
Total FP COMP	757	>	736
Total FN	4625	<	5199
P-value	3.56938820447e-08

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Performance plots

Comparison of performance of Contrafold and Afold. Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data (individual counts for Contrafold and Afold).
Average Matthews Correlation Coefficients (MCC) with 95% confidence intervals (CIs) were plotted for different RNA families, for which at least 3 members were present in the benchmarking dataset. 'n' denotes the number of MCCs used to calculate the average and CI. See tables below for raw data (individual counts for Contrafold and Afold).
Comparison of average Matthews Correlation Coefficients (MCCs) for Contrafold and Afold. The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data (individual counts for Contrafold and Afold).

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Performance of Contrafold - scored higher in this pairwise comparison

1. Total counts & total scores for Contrafold

Total Base Pair Counts
Total TP	6710
Total TN	1569732
Total FP	4677
Total FP CONTRA	406
Total FP INCONS	3514
Total FP COMP	757
Total FN	4625

Total Scores
MCC	0.609
Average MCC ± 95% Confidence Intervals	0.639 ± 0.031
Sensitivity	0.592
Positive Predictive Value	0.631
Nr of predictions	530

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2. Individual counts for Contrafold [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
CRW_00548	5S_rRNA links to Rfam database...	0.86	0.82	0.91	31	7347	6	0	3	3	7
CRW_00552	5S_rRNA links to Rfam database...	0.92	0.87	0.97	34	7105	6	0	1	5	5
CRW_00555	5S_rRNA links to Rfam database...	0.91	0.85	0.97	34	7591	2	0	1	1	6
CRW_00567	5S_rRNA links to Rfam database...	0.74	0.75	0.73	30	7462	14	4	7	3	10
CRW_00570	5S_rRNA links to Rfam database...	0.88	0.89	0.87	33	6865	10	0	5	5	4
CRW_01484	5S_rRNA links to Rfam database...	0.18	0.18	0.19	7	7467	30	4	25	1	32
CRW_01485	5S_rRNA links to Rfam database...	0.50	0.49	0.51	19	7466	19	3	15	1	20
CRW_01487	5S_rRNA links to Rfam database...	0.12	0.12	0.12	5	7462	36	4	32	0	36
CRW_01489	5S_rRNA links to Rfam database...	0.17	0.18	0.18	7	7463	33	3	30	0	32
CRW_01491	5S_rRNA links to Rfam database...	0.73	0.65	0.82	28	8351	7	0	6	1	15
CRW_01496	5S_rRNA links to Rfam database...	0.67	0.64	0.70	28	8088	18	0	12	6	16
CRW_01497	5S_rRNA links to Rfam database...	0.57	0.50	0.65	20	7109	16	0	11	5	20
CRW_01498	5S_rRNA links to Rfam database...	0.95	0.93	0.98	40	8087	5	0	1	4	3
CRW_01499	5S_rRNA links to Rfam database...	0.70	0.61	0.81	25	7970	8	0	6	2	16
CRW_01500	5S_rRNA links to Rfam database...	0.16	0.16	0.17	6	7714	30	5	25	0	32
CRW_01502	5S_rRNA links to Rfam database...	0.89	0.89	0.89	41	8339	10	0	5	5	5
CRW_01507	5S_rRNA links to Rfam database...	0.90	0.85	0.95	35	7466	7	0	2	5	6
CRW_01508	5S_rRNA links to Rfam database...	0.84	0.81	0.87	34	7962	11	0	5	6	8
CRW_01521	5S_rRNA links to Rfam database...	0.69	0.67	0.73	24	6870	14	0	9	5	12
CRW_01536	5S_rRNA links to Rfam database...	0.77	0.76	0.78	28	6985	9	0	8	1	9
CRW_01537	5S_rRNA links to Rfam database...	0.62	0.57	0.68	21	7109	16	0	10	6	16
CRW_01539	5S_rRNA links to Rfam database...	0.82	0.81	0.83	30	7104	12	0	6	6	7
CRW_01541	5S_rRNA links to Rfam database...	0.89	0.86	0.91	32	7105	7	0	3	4	5
CRW_01548	5S_rRNA links to Rfam database...	0.79	0.78	0.81	29	6985	10	0	7	3	8
CRW_01559	5S_rRNA links to Rfam database...	0.79	0.78	0.81	29	7224	14	0	7	7	8
CRW_01562	5S_rRNA links to Rfam database...	0.89	0.84	0.94	31	7107	9	0	2	7	6
CRW_01563	5S_rRNA links to Rfam database...	0.89	0.84	0.94	31	6870	3	0	2	1	6
CRW_01566	5S_rRNA links to Rfam database...	0.30	0.30	0.31	11	7104	25	5	20	0	26
CRW_01570	5S_rRNA links to Rfam database...	0.85	0.84	0.86	31	7104	12	0	5	7	6
CRW_01572	5S_rRNA links to Rfam database...	0.25	0.22	0.30	8	6994	19	6	13	0	29
CRW_01578	5S_rRNA links to Rfam database...	0.85	0.84	0.86	31	7104	11	0	5	6	6
CRW_01580	5S_rRNA links to Rfam database...	0.69	0.65	0.73	24	7107	13	0	9	4	13
CRW_01581	5S_rRNA links to Rfam database...	0.28	0.27	0.30	10	7107	25	0	23	2	27
CRW_01583	5S_rRNA links to Rfam database...	0.90	0.84	0.97	31	7108	4	0	1	3	6
CRW_01590	5S_rRNA links to Rfam database...	0.23	0.24	0.23	9	7101	31	3	27	1	28
CRW_01603	5S_rRNA links to Rfam database...	0.86	0.81	0.91	30	7107	5	0	3	2	7
CRW_01605	5S_rRNA links to Rfam database...	0.73	0.70	0.76	26	7106	13	0	8	5	11
CRW_01608	5S_rRNA links to Rfam database...	0.88	0.86	0.89	32	8349	9	0	4	5	5
CRW_01613	5S_rRNA links to Rfam database...	0.57	0.57	0.58	21	6985	18	1	14	3	16
CRW_01620	5S_rRNA links to Rfam database...	0.89	0.89	0.89	33	6984	7	0	4	3	4
CRW_01621	5S_rRNA links to Rfam database...	0.72	0.70	0.74	26	7105	14	0	9	5	11
CRW_01623	5S_rRNA links to Rfam database...	0.92	0.89	0.94	33	7105	6	0	2	4	4
NDB_00014	-	1.00	1.00	1.00	10	180	0	0	0	0	0
NDB_00015	-	0.34	0.40	0.33	4	264	8	0	8	0	6
NDB_00016	-	1.00	1.00	1.00	12	264	0	0	0	0	0
NDB_00047	-	1.00	1.00	1.00	12	264	0	0	0	0	0
NDB_00048	-	-0.02	0.00	0.00	0	1512	28	0	28	0	28
NDB_00049	-	1.00	1.00	1.00	13	312	0	0	0	0	0
PDB_00001	-	0.91	0.83	1.00	10	266	0	0	0	0	2
PDB_00002	-	0.87	0.88	0.88	7	202	1	0	1	0	1
PDB_00003	-	0.86	0.75	1.00	9	342	0	0	0	0	3
PDB_00004	-	0.86	0.74	1.00	14	806	0	0	0	0	5
PDB_00006	-	1.00	1.00	1.00	14	689	0	0	0	0	0
PDB_00011	-	1.00	1.00	1.00	12	264	0	0	0	0	0
PDB_00012	mir-TAR links to Rfam database...	1.00	1.00	1.00	7	399	3	0	0	3	0
PDB_00013	-	1.00	1.00	1.00	10	396	1	0	0	1	0
PDB_00017	-	0.66	0.60	0.75	9	691	3	0	3	0	6
PDB_00018	-	0.18	0.20	0.20	4	1015	16	2	14	0	16
PDB_00019	-	0.48	0.50	0.50	4	245	4	0	4	0	4
PDB_00020	-	0.38	0.35	0.44	7	764	9	0	9	0	13
PDB_00021	-	1.00	1.00	1.00	8	182	0	0	0	0	0
PDB_00022	-	0.94	0.89	1.00	8	245	0	0	0	0	1
PDB_00032	-	0.89	0.80	1.00	12	891	1	0	0	1	3
PDB_00034	-	0.57	0.33	1.00	4	374	0	0	0	0	8
PDB_00035	-	0.94	0.89	1.00	8	202	0	0	0	0	1
PDB_00036	-	-0.01	0.00	0.00	0	3457	29	0	29	0	27
PDB_00039	-	-0.01	0.00	0.00	0	5312	44	0	44	0	45
PDB_00040	-	0.83	0.70	1.00	7	269	0	0	0	0	3
PDB_00043	-	0.83	0.77	0.91	10	424	1	0	1	0	3
PDB_00048	-	1.00	1.00	1.00	9	291	1	0	0	1	0
PDB_00049	-	0.83	0.70	1.00	7	224	0	0	0	0	3
PDB_00054	-	-0.04	0.00	0.00	0	184	6	0	6	0	10
PDB_00056	-	0.25	0.25	0.29	4	616	10	0	10	0	12
PDB_00057	-	1.00	1.00	1.00	10	341	1	0	0	1	0
PDB_00065	-	0.77	0.60	1.00	6	400	1	0	0	1	4
PDB_00074	-	-0.03	0.00	0.00	0	370	8	0	8	0	12
PDB_00081	-	0.94	0.89	1.00	8	182	0	0	0	0	1
PDB_00088	-	0.86	0.75	1.00	9	426	1	0	0	1	3
PDB_00096	-	1.00	1.00	1.00	12	313	0	0	0	0	0
PDB_00098	-	0.81	0.67	1.00	4	227	0	0	0	0	2
PDB_00104	-	-0.03	0.00	0.00	0	614	16	0	16	0	16
PDB_00107	-	0.95	0.91	1.00	10	455	2	0	0	2	1
PDB_00108	-	1.00	1.00	1.00	7	203	0	0	0	0	0
PDB_00110	-	1.00	1.00	1.00	7	246	1	0	0	1	0
PDB_00113	-	0.94	0.89	1.00	8	223	0	0	0	0	1
PDB_00115	-	-0.03	0.00	0.00	0	545	16	0	16	0	16
PDB_00116	-	0.70	0.50	1.00	3	228	0	0	0	0	3
PDB_00119	-	0.95	0.90	1.00	9	244	0	0	0	0	1
PDB_00120	-	0.95	0.90	1.00	9	222	0	0	0	0	1
PDB_00121	-	0.95	0.90	1.00	9	222	0	0	0	0	1
PDB_00122	-	1.00	1.00	1.00	12	288	0	0	0	0	0
PDB_00123	-	-0.01	0.00	0.00	0	4151	35	0	35	0	36
PDB_00125	-	-0.03	0.00	0.00	0	225	6	0	6	0	10
PDB_00130	-	1.00	1.00	1.00	6	270	2	0	0	2	0
PDB_00132	-	0.86	0.75	1.00	9	426	0	0	0	0	3
PDB_00136	-	0.76	0.73	0.79	19	2391	7	0	5	2	7
PDB_00138	-	0.79	0.63	1.00	5	373	0	0	0	0	3
PDB_00142	-	0.91	0.83	1.00	10	425	0	0	0	0	2
PDB_00149	-	0.89	0.80	1.00	12	691	0	0	0	0	3
PDB_00150	-	0.95	0.90	1.00	9	291	1	0	0	1	1
PDB_00153	-	1.00	1.00	1.00	10	243	1	0	0	1	0
PDB_00155	-	0.86	0.75	1.00	6	319	0	0	0	0	2
PDB_00157	-	0.28	0.24	0.33	7	3300	19	0	14	5	22
PDB_00158	-	0.83	0.70	1.00	14	847	0	0	0	0	6
PDB_00159	-	0.85	0.73	1.00	8	343	1	0	0	1	3
PDB_00160	-	0.94	0.89	1.00	8	268	0	0	0	0	1
PDB_00168	-	0.61	0.67	0.57	4	293	5	0	3	2	2
PDB_00169	-	0.83	0.70	1.00	7	224	0	0	0	0	3
PDB_00170	-	0.93	0.88	1.00	14	616	0	0	0	0	2
PDB_00171	-	0.81	0.67	1.00	8	427	0	0	0	0	4
PDB_00174	-	0.95	0.91	1.00	20	1015	0	0	0	0	2
PDB_00178	-	0.90	0.82	1.00	9	519	1	0	0	1	2
PDB_00181	-	0.88	0.78	1.00	7	224	0	0	0	0	2
PDB_00182	-	0.88	0.78	1.00	7	246	0	0	0	0	2
PDB_00183	-	0.91	0.83	1.00	19	1466	0	0	0	0	4
PDB_00184	-	0.87	0.77	1.00	10	551	0	0	0	0	3
PDB_00185	-	0.93	0.86	1.00	24	2902	2	0	0	2	4
PDB_00190	-	0.95	0.90	1.00	9	222	0	0	0	0	1
PDB_00192	-	0.21	0.17	0.29	6	3219	15	0	15	0	30
PDB_00195	-	0.30	0.29	0.33	12	3450	24	0	24	0	30
PDB_00197	-	1.00	1.00	1.00	7	293	3	0	0	3	0
PDB_00200	-	0.94	0.89	1.00	8	202	0	0	0	0	1
PDB_00201	-	0.77	0.60	1.00	6	319	0	0	0	0	4
PDB_00202	-	0.96	0.93	1.00	13	548	1	0	0	1	1
PDB_00203	-	0.96	0.92	1.00	12	549	0	0	0	0	1
PDB_00205	-	0.84	0.71	1.00	10	425	0	0	0	0	4
PDB_00206	-	1.00	1.00	1.00	8	268	0	0	0	0	0
PDB_00207	-	1.00	1.00	1.00	14	364	0	0	0	0	0
PDB_00209	-	0.56	0.45	0.71	5	554	2	0	2	0	6
PDB_00211	-	1.00	1.00	1.00	10	180	0	0	0	0	0
PDB_00213	Gammaretro_CES links to Rfam database...	0.94	0.88	1.00	36	5014	0	0	0	0	5
PDB_00214	-	0.74	0.64	0.88	7	398	2	0	1	1	4
PDB_00215	-	-0.02	0.00	0.00	0	1104	24	0	24	0	24
PDB_00219	-	1.00	1.00	1.00	7	203	0	0	0	0	0
PDB_00221	-	0.88	0.78	1.00	7	246	0	0	0	0	2
PDB_00224	-	0.93	0.88	1.00	7	183	0	0	0	0	1
PDB_00234	-	0.91	0.83	1.00	10	266	0	0	0	0	2
PDB_00236	-	-0.02	0.00	0.00	0	1108	20	0	20	0	24
PDB_00237	-	0.88	0.78	1.00	7	371	1	0	0	1	2
PDB_00239	-	0.82	0.72	0.93	13	806	1	0	1	0	5
PDB_00243	-	0.63	0.58	0.70	7	620	3	0	3	0	5
PDB_00248	-	1.00	1.00	1.00	12	264	0	0	0	0	0
PDB_00249	-	0.00	0.00	0.00	0	276	0	0	0	0	11
PDB_00250	-	0.87	0.80	0.95	20	1749	3	0	1	2	5
PDB_00252	-	-0.02	0.00	0.00	0	764	18	2	14	2	15
PDB_00254	-	-0.04	0.00	0.00	0	264	12	0	12	0	12
PDB_00257	-	0.95	0.91	1.00	10	341	0	0	0	0	1
PDB_00261	-	0.93	0.88	1.00	14	482	0	0	0	0	2
PDB_00262	-	0.32	0.33	0.33	8	1104	16	0	16	0	16
PDB_00267	-	-0.04	0.00	0.00	0	364	14	0	14	0	14
PDB_00286	-	-0.03	0.00	0.00	0	183	10	0	7	3	6
PDB_00312	-	1.00	1.00	1.00	9	426	0	0	0	0	0
PDB_00317	-	1.00	1.00	1.00	10	368	1	0	0	1	0
PDB_00339	-	0.83	0.69	1.00	11	655	0	0	0	0	5
PDB_00341	-	0.83	0.69	1.00	11	692	0	0	0	0	5
PDB_00342	-	-0.02	0.00	0.00	0	760	20	0	20	0	10
PDB_00343	-	0.62	0.52	0.73	11	1581	5	0	4	1	10
PDB_00347	-	0.89	0.80	1.00	16	1160	0	0	0	0	4
PDB_00349	-	-0.02	0.00	0.00	0	930	16	0	16	0	14
PDB_00351	-	-0.02	0.00	0.00	0	551	10	0	10	0	12
PDB_00352	-	0.92	0.84	1.00	16	1209	0	0	0	0	3
PDB_00357	-	-0.01	0.00	0.00	0	771	9	0	9	0	10
PDB_00358	-	0.37	0.38	0.36	18	10535	32	6	26	0	29
PDB_00365	-	0.96	0.93	1.00	13	422	0	0	0	0	1
PDB_00371	-	0.86	0.80	0.92	12	548	1	0	1	0	3
PDB_00377	-	1.00	1.00	1.00	12	516	0	0	0	0	0
PDB_00378	-	0.96	0.93	1.00	13	690	0	0	0	0	1
PDB_00400	-	-0.01	0.00	0.00	0	3136	24	0	24	0	34
PDB_00402	tRNA links to Rfam database...	0.93	0.91	0.95	21	2753	1	0	1	0	2
PDB_00411	-	0.54	0.47	0.64	7	584	4	0	4	0	8
PDB_00417	-	0.10	0.11	0.10	6	14136	54	6	48	0	50
PDB_00420	-	0.84	0.80	0.89	8	487	4	0	1	3	2
PDB_00431	tRNA links to Rfam database...	0.77	0.75	0.79	15	2192	7	0	4	3	5
PDB_00433	-	0.60	0.59	0.63	20	6638	12	0	12	0	14
PDB_00447	-	0.66	0.55	0.80	24	7110	6	6	0	0	20
PDB_00454	-	-0.01	0.00	0.00	0	2667	34	0	34	0	32
PDB_00481	-	-0.01	0.00	0.00	0	1869	22	0	22	0	26
PDB_00513	-	1.00	1.00	1.00	7	224	0	0	0	0	0
PDB_00522	-	0.56	0.56	0.59	10	1111	7	0	7	0	8
PDB_00526	-	-0.01	0.00	0.00	0	296	5	1	3	1	3
PDB_00527	-	-0.02	0.00	0.00	0	295	5	1	4	0	5
PDB_00537	-	0.94	0.89	1.00	8	398	2	0	0	2	1
PDB_00553	mir-TAR links to Rfam database...	1.00	1.00	1.00	11	454	0	0	0	0	0
PDB_00565	-	0.70	0.64	0.76	32	8086	11	0	10	1	18
PDB_00570	-	0.90	0.82	1.00	18	2260	0	0	0	0	4
PDB_00571	tRNA links to Rfam database...	0.87	0.80	0.95	20	3300	1	1	0	0	5
PDB_00573	-	0.42	0.41	0.44	14	6638	22	0	18	4	20
PDB_00584	-	0.60	0.53	0.69	9	1472	4	0	4	0	8
PDB_00599	-	0.96	0.93	1.00	13	548	0	0	0	0	1
PDB_00603	-	0.95	0.90	1.00	9	244	0	0	0	0	1
PDB_00611	-	-0.01	0.00	0.00	0	773	7	1	6	0	11
PDB_00617	-	0.95	0.90	1.00	9	267	0	0	0	0	1
PDB_00627	-	0.72	0.71	0.75	12	1637	6	0	4	2	5
PDB_00629	-	0.39	0.35	0.44	8	1635	10	0	10	0	15
PDB_00637	-	0.23	0.24	0.23	5	2324	18	2	15	1	16
PDB_00648	-	-0.02	0.00	0.00	0	844	17	4	13	0	13
PDB_00679	-	0.00	0.00	0.00	0	17518	60	4	56	0	56
PDB_00681	-	-0.01	0.00	0.00	0	1256	19	2	17	0	19
PDB_00682	-	-0.03	0.00	0.00	0	480	16	0	16	0	16
PDB_00686	-	1.00	1.00	1.00	19	684	0	0	0	0	0
PDB_00687	-	0.35	0.33	0.40	4	620	6	0	6	0	8
PDB_00692	-	0.12	0.10	0.18	2	1214	9	0	9	0	18
PDB_00693	-	0.94	0.88	1.00	15	1161	2	0	0	2	2
PDB_00702	-	0.74	0.72	0.76	26	4337	10	0	8	2	10
PDB_00705	-	1.00	1.00	1.00	8	245	1	0	0	1	0
PDB_00709	-	-0.02	0.00	0.00	0	765	15	0	15	0	16
PDB_00710	-	-0.01	0.00	0.00	0	774	6	0	6	0	16
PDB_00713	-	0.58	0.57	0.60	12	1996	8	1	7	0	9
PDB_00716	HDV_ribozyme links to Rfam database...	0.33	0.30	0.37	7	2682	13	0	12	1	16
PDB_00724	-	-0.01	0.00	0.00	0	2119	26	0	26	0	29
PDB_00725	-	0.97	0.93	1.00	14	581	0	0	0	0	1
PDB_00726	-	1.00	1.00	1.00	9	342	1	0	0	1	0
PDB_00727	-	1.00	1.00	1.00	7	554	4	0	0	4	0
PDB_00728	-	0.97	0.93	1.00	14	482	0	0	0	0	1
PDB_00733	-	0.23	0.23	0.23	7	2896	24	2	21	1	23
PDB_00734	-	0.83	0.70	1.00	7	224	0	0	0	0	3
PDB_00737	-	0.95	0.91	1.00	10	341	0	0	0	0	1
PDB_00740	-	0.90	0.82	1.00	9	222	0	0	0	0	2
PDB_00741	Entero_5_CRE links to Rfam database...	0.87	0.76	1.00	13	690	0	0	0	0	4
PDB_00746	-	-0.01	0.00	0.00	0	4717	38	2	34	2	38
PDB_00750	-	0.64	0.61	0.67	30	11890	17	0	15	2	19
PDB_00751	-	0.87	0.77	1.00	10	585	2	0	0	2	3
PDB_00752	-	0.38	0.36	0.41	16	7342	26	0	23	3	28
PDB_00754	-	0.27	0.33	0.24	4	1468	15	4	9	2	8
PDB_00800	-	0.32	0.34	0.32	10	2049	22	2	19	1	19
PDB_00806	-	0.80	0.72	0.90	18	1810	2	0	2	0	7
PDB_00809	-	0.88	0.79	1.00	11	485	0	0	0	0	3
PDB_00810	s2m links to Rfam database...	0.77	0.71	0.86	12	1067	3	0	2	1	5
PDB_00815	-	0.58	0.56	0.63	5	622	4	0	3	1	4
PDB_00823	-	-0.03	0.00	0.00	0	186	4	0	4	0	9
PDB_00828	Purine links to Rfam database...	0.88	0.78	1.00	21	2464	1	0	0	1	6
PDB_00829	Purine links to Rfam database...	0.84	0.75	0.95	18	2259	1	0	1	0	6
PDB_00855	-	0.90	0.90	0.90	9	455	2	0	1	1	1
PDB_00864	-	0.72	0.62	0.85	39	12995	7	0	7	0	24
PDB_00865	-	0.96	0.92	1.00	11	340	0	0	0	0	1
PDB_00870	-	-0.02	0.00	0.00	0	1109	19	0	19	0	16
PDB_00871	-	-0.02	0.00	0.00	0	1104	24	0	24	0	24
PDB_00873	-	-0.01	0.00	0.00	0	4512	48	0	48	0	48
PDB_00874	-	-0.02	0.00	0.00	0	928	19	0	18	1	20
PDB_00876	HIV_FE links to Rfam database...	0.92	0.90	0.95	18	971	1	0	1	0	2
PDB_00878	-	0.96	0.92	1.00	11	485	0	0	0	0	1
PDB_00879	-	0.86	0.77	0.97	30	5019	3	0	1	2	9
PDB_00885	-	0.91	0.89	0.94	16	803	1	0	1	0	2
PDB_00886	-	-0.01	0.00	0.00	0	4146	40	0	40	0	40
PDB_00890	-	-0.02	0.00	0.00	0	687	16	2	14	0	14
PDB_00891	-	-0.02	0.00	0.00	0	926	20	6	14	0	15
PDB_00892	-	-0.01	0.00	0.00	0	2534	22	4	18	0	15
PDB_00897	-	0.00	0.00	0.00	0	11424	52	3	49	0	61
PDB_00906	-	-0.01	0.00	0.00	0	6626	44	0	44	0	48
PDB_00924	-	0.97	0.94	1.00	34	3621	0	0	0	0	2
PDB_00925	-	0.95	0.91	1.00	10	341	1	0	0	1	1
PDB_00928	-	0.66	0.63	0.71	5	293	2	0	2	0	3
PDB_00929	-	-0.03	0.00	0.00	0	760	20	0	20	0	20
PDB_00932	-	0.37	0.38	0.38	5	807	8	1	7	0	8
PDB_00937	-	1.00	1.00	1.00	18	612	0	0	0	0	0
PDB_00943	-	0.18	0.13	0.25	2	1423	7	1	5	1	13
PDB_00945	-	0.89	0.80	1.00	8	457	0	0	0	0	2
PDB_00960	-	-0.03	0.00	0.00	0	394	12	2	10	0	10
PDB_00966	-	-0.03	0.00	0.00	0	244	9	2	7	0	7
PDB_00974	-	0.66	0.44	1.00	4	374	0	0	0	0	5
PDB_00979	-	0.00	0.00	0.00	0	11734	49	9	38	2	48
PDB_00980	-	0.45	0.49	0.43	20	11128	29	6	21	2	21
PDB_00986	-	0.96	0.93	1.00	13	422	0	0	0	0	1
PDB_00987	-	0.93	0.88	1.00	14	547	0	0	0	0	2
PDB_00989	-	0.94	0.89	1.00	32	2971	0	0	0	0	4
PDB_01000	-	0.63	0.67	0.59	20	10844	37	6	8	23	10
PDB_01009	tRNA links to Rfam database...	0.46	0.52	0.41	11	2458	16	5	11	0	10
PDB_01025	-	1.00	1.00	1.00	9	244	0	0	0	0	0
PDB_01035	-	0.96	0.92	1.00	24	1516	0	0	0	0	2
PDB_01040	-	0.29	0.30	0.30	6	1108	14	0	14	0	14
PDB_01044	-	1.00	1.00	1.00	16	930	3	0	0	3	0
PDB_01045	-	0.98	0.96	1.00	22	1203	1	0	0	1	1
PDB_01050	UnaL2 links to Rfam database...	0.96	0.92	1.00	12	618	2	0	0	2	1
PDB_01051	Telomerase-cil links to Rfam database...	0.88	0.85	0.92	11	891	5	0	1	4	2
PDB_01053	tRNA links to Rfam database...	1.00	1.00	1.00	16	1362	0	0	0	0	0
PDB_01054	-	0.45	0.47	0.43	20	11735	26	6	20	0	23
PDB_01056	-	0.94	0.89	1.00	8	245	0	0	0	0	1
PDB_01057	-	1.00	1.00	1.00	8	202	0	0	0	0	0
PDB_01060	-	-0.01	0.00	0.00	0	1984	32	0	32	0	21
PDB_01061	-	0.19	0.20	0.20	8	3120	32	0	32	0	32
PDB_01065	-	0.77	0.60	1.00	6	225	0	0	0	0	4
PDB_01070	-	0.41	0.37	0.45	20	12676	24	0	24	0	34
PDB_01071	-	0.69	0.62	0.80	8	396	2	0	2	0	5
PDB_01074	-	-0.01	0.00	0.00	0	2744	31	3	28	0	25
PDB_01075	-	0.93	0.88	1.00	28	2387	0	0	0	0	4
PDB_01077	-	0.92	0.89	0.94	17	1935	2	0	1	1	2
PDB_01084	-	1.00	1.00	1.00	7	224	1	0	0	1	0
PDB_01092	glmS links to Rfam database...	0.70	0.65	0.76	34	10108	14	2	9	3	18
PDB_01097	-	0.93	0.88	1.00	7	203	0	0	0	0	1
PDB_01099	-	0.85	0.73	1.00	8	268	0	0	0	0	3
PDB_01100	-	0.72	0.64	0.82	14	1468	3	1	2	0	8
PDB_01108	-	1.00	1.00	1.00	9	222	0	0	0	0	0
PDB_01117	-	0.74	0.65	0.85	11	767	2	0	2	0	6
PDB_01119	-	0.89	0.86	0.92	12	617	1	0	1	0	2
PDB_01126	-	0.48	0.50	0.47	14	3051	18	2	14	2	14
PDB_01128	-	0.96	0.93	1.00	25	2750	3	0	0	3	2
PDB_01130	-	-0.01	0.00	0.00	0	1746	24	4	20	0	20
PDB_01133	-	1.00	1.00	1.00	10	341	0	0	0	0	0
PDB_01135	-	-0.02	0.00	0.00	0	397	9	2	7	0	9
PDB_01137	-	-0.02	0.00	0.00	0	321	4	2	2	0	8
PDB_01145	-	1.00	1.00	1.00	14	766	2	0	0	2	0
PDB_01150	-	0.93	0.88	1.00	7	224	0	0	0	0	1
PDB_01152	HIV_FS2 links to Rfam database...	0.96	0.93	1.00	13	548	0	0	0	0	1
PDB_01154	-	0.90	0.82	1.00	9	397	0	0	0	0	2
PDB_01156	-	-0.01	0.00	0.00	0	3796	32	0	32	0	35
PDB_01160	-	0.56	0.50	0.63	10	2064	6	0	6	0	10
PDB_01162	-	0.48	0.56	0.42	5	1528	8	0	7	1	4
PDB_01163	-	0.98	0.95	1.00	21	1014	0	0	0	0	1
PDB_01167	-	0.93	0.88	1.00	7	183	0	0	0	0	1
PDB_01168	-	0.86	0.75	1.00	6	184	0	0	0	0	2
PDB_01178	-	0.92	0.86	1.00	12	516	0	0	0	0	2
PDB_01187	-	0.60	0.54	0.68	28	9970	14	0	13	1	24
PDB_01199	-	-0.01	0.00	0.00	0	2125	20	0	20	0	24
PDB_01205	-	-0.02	0.00	0.00	0	1013	22	4	18	0	18
PDB_01208	-	0.89	0.80	1.00	16	1160	0	0	0	0	4
PDB_01209	-	0.89	0.80	1.00	16	1160	0	0	0	0	4
PDB_01212	-	0.89	0.80	1.00	16	1160	0	0	0	0	4
PDB_01213	-	0.88	0.78	1.00	14	1067	0	0	0	0	4
PDB_01216	-	0.89	0.80	1.00	16	1160	0	0	0	0	4
PDB_01219	-	-0.02	0.00	0.00	0	926	20	0	20	0	20
PDB_01237	-	1.00	1.00	1.00	8	268	0	0	0	0	0
PDB_01249	-	-0.01	0.00	0.00	0	11109	66	12	54	0	54
PDB_01251	-	0.96	0.92	1.00	12	313	0	0	0	0	1
PDB_01255	-	0.80	0.73	0.87	41	12514	14	0	6	8	15
PDB_01260	-	0.64	0.56	0.74	14	1811	5	1	4	0	11
PDB_01262	-	0.00	0.00	0.00	0	190	0	0	0	0	8
PDB_01281	-	-0.04	0.00	0.00	0	364	14	0	14	0	14
PDB_01299	-	0.74	0.67	0.83	10	891	2	1	1	0	5
PDB_01309	-	-0.01	0.00	0.00	0	9117	64	9	54	1	39
PDB_01313	-	-0.03	0.00	0.00	0	270	6	4	2	0	8
PDB_01325	-	1.00	1.00	1.00	12	264	0	0	0	0	0
PDB_01332	-	1.00	1.00	1.00	9	342	0	0	0	0	0
PDB_01337	-	-0.02	0.00	0.00	0	551	10	2	8	0	11
PDB_01338	-	-0.03	0.00	0.00	0	269	7	2	5	0	8
PDB_01340	-	1.00	1.00	1.00	8	292	0	0	0	0	0
RFA_00389	Hammerhead_3 links to Rfam database...	0.93	0.93	0.93	14	1416	4	0	1	3	1
RFA_00390	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	3	0	0	3	0
RFA_00391	Hammerhead_3 links to Rfam database...	0.62	0.60	0.64	9	1417	7	2	3	2	6
RFA_00396	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	2	0	0	2	1
RFA_00402	Hammerhead_3 links to Rfam database...	0.83	0.80	0.86	12	1417	3	0	2	1	3
RFA_00409	Hammerhead_3 links to Rfam database...	0.62	0.60	0.64	9	1417	6	1	4	1	6
RFA_00416	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1470	3	0	0	3	0
RFA_00420	-	1.00	1.00	1.00	15	3306	15	0	0	15	0
RFA_00425	Hammerhead_3 links to Rfam database...	0.93	0.87	1.00	13	1640	5	0	0	5	2
RFA_00427	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1471	4	0	0	4	1
RFA_00433	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00434	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00436	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00440	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1470	3	0	0	3	0
RFA_00442	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00444	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1525	2	0	0	2	0
RFA_00446	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1471	5	0	0	5	1
RFA_00449	Hammerhead_3 links to Rfam database...	0.73	0.60	0.90	9	1475	3	0	1	2	6
RFA_00582	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	5980	21	0	0	21	0
RFA_00583	Y_RNA links to Rfam database...	0.93	0.93	0.93	14	4935	6	0	1	5	1
RFA_00585	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4836	3	0	0	3	0
RFA_00587	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4836	10	0	0	10	0
RFA_00588	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4545	15	0	0	15	0
RFA_00589	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4356	18	0	0	18	0
RFA_00590	-	0.89	0.80	1.00	12	5344	15	0	0	15	3
RFA_00594	Y_RNA links to Rfam database...	0.97	0.93	1.00	14	2761	10	0	0	10	1
RFA_00596	Y_RNA links to Rfam database...	0.00	0.00	0.00	0	5984	20	5	6	9	15
RFA_00603	Telomerase-cil links to Rfam database...	0.73	0.71	0.76	25	13497	8	4	4	0	10
RFA_00604	Telomerase-cil links to Rfam database...	0.71	0.74	0.68	26	13492	26	2	10	14	9
RFA_00607	Telomerase-cil links to Rfam database...	0.87	0.81	0.94	29	17735	11	0	2	9	7
RFA_00609	Telomerase-cil links to Rfam database...	0.76	0.78	0.74	29	17916	27	2	8	17	8
RFA_00610	Telomerase-cil links to Rfam database...	0.90	0.86	0.94	32	17171	20	0	2	18	5
RFA_00611	Telomerase-cil links to Rfam database...	0.82	0.74	0.90	26	13012	6	0	3	3	9
RFA_00613	Telomerase-cil links to Rfam database...	0.60	0.51	0.69	18	12854	9	3	5	1	17
RFA_00615	Telomerase-cil links to Rfam database...	0.63	0.57	0.69	20	13337	9	4	5	0	15
RFA_00632	HDV_ribozyme links to Rfam database...	0.38	0.39	0.37	11	4065	19	0	19	0	17
RFA_00636	HDV_ribozyme links to Rfam database...	0.60	0.64	0.56	18	3973	14	4	10	0	10
RFA_00644	Vimentin3 links to Rfam database...	0.00	0.00	0.00	0	2692	9	1	8	0	18
RFA_00645	Vimentin3 links to Rfam database...	-0.01	0.00	0.00	0	2402	13	3	10	0	18
RFA_00649	Vimentin3 links to Rfam database...	0.26	0.22	0.31	4	2132	9	6	3	0	14
RFA_00653	Vimentin3 links to Rfam database...	-0.01	0.00	0.00	0	2133	12	2	10	0	18
RFA_00654	Vimentin3 links to Rfam database...	-0.01	0.00	0.00	0	2400	15	2	13	0	18
RFA_00658	Hammerhead_1 links to Rfam database...	0.59	0.50	0.70	7	1118	5	0	3	2	7
RFA_00659	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	1120	10	1	7	2	14
RFA_00664	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	980	11	0	10	1	14
RFA_00667	Hammerhead_1 links to Rfam database...	0.29	0.29	0.31	4	977	10	1	8	1	10
RFA_00668	Hammerhead_1 links to Rfam database...	0.53	0.43	0.67	6	981	3	0	3	0	8
RFA_00672	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	897	6	0	6	0	13
RFA_00673	Hammerhead_1 links to Rfam database...	0.42	0.36	0.50	5	1118	6	0	5	1	9
RFA_00674	Hammerhead_1 links to Rfam database...	0.96	0.93	1.00	13	1115	1	0	0	1	1
RFA_00675	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	980	11	0	10	1	14
RFA_00677	Hammerhead_1 links to Rfam database...	0.59	0.57	0.62	8	977	7	0	5	2	6
RFA_00678	Hammerhead_1 links to Rfam database...	0.53	0.29	1.00	4	942	0	0	0	0	10
RFA_00680	Hammerhead_1 links to Rfam database...	0.74	0.71	0.77	10	1115	6	0	3	3	4
RFA_00683	-	0.35	0.29	0.44	4	1026	5	0	5	0	10
RFA_00684	Hammerhead_1 links to Rfam database...	0.66	0.64	0.69	9	977	5	0	4	1	5
RFA_00685	Hammerhead_1 links to Rfam database...	0.44	0.36	0.56	5	981	4	0	4	0	9
RFA_00695	Hammerhead_1 links to Rfam database...	0.44	0.36	0.56	5	7012	29	1	3	25	9
RFA_00703	Hammerhead_1 links to Rfam database...	0.67	0.64	0.69	9	4265	19	1	3	15	5
RFA_00704	Hammerhead_1 links to Rfam database...	0.32	0.21	0.50	3	984	5	0	3	2	11
RFA_00705	Hammerhead_1 links to Rfam database...	0.74	0.71	0.77	10	1022	4	0	3	1	4
RFA_00706	Hammerhead_1 links to Rfam database...	0.37	0.29	0.50	4	1027	4	0	4	0	10
RFA_00707	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	1027	8	1	7	0	14
RFA_00708	Hammerhead_1 links to Rfam database...	0.40	0.29	0.57	4	1028	3	0	3	0	10
RFA_00709	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	981	10	0	9	1	14
RFA_00710	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	979	11	0	11	0	14
RFA_00711	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	1026	9	0	9	0	14
RFA_00716	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	937	9	0	9	0	14
RFA_00717	Hammerhead_1 links to Rfam database...	0.66	0.64	0.69	9	890	4	0	4	0	5
RFA_00720	-	0.77	0.71	0.83	10	1164	2	0	2	0	4
RFA_00721	-	0.33	0.29	0.40	4	1166	6	0	6	0	10
RFA_00730	s2m links to Rfam database...	0.75	0.75	0.75	9	891	5	0	3	2	3
RFA_00731	s2m links to Rfam database...	0.83	0.83	0.83	10	891	4	0	2	2	2
RFA_00733	s2m links to Rfam database...	0.83	0.83	0.83	10	891	4	0	2	2	2
RFA_00734	s2m links to Rfam database...	0.83	0.83	0.83	10	891	5	0	2	3	2
RFA_00736	s2m links to Rfam database...	0.83	0.83	0.83	10	891	4	0	2	2	2
RFA_00737	s2m links to Rfam database...	0.83	0.83	0.83	10	891	4	0	2	2	2
RFA_00745	s2m links to Rfam database...	0.66	0.67	0.67	8	934	6	1	3	2	4
RFA_00749	s2m links to Rfam database...	0.83	0.83	0.83	10	891	4	0	2	2	2
RFA_00758	s2m links to Rfam database...	0.60	0.58	0.64	7	892	5	1	3	1	5
RFA_00762	s2m links to Rfam database...	0.64	0.67	0.62	8	890	6	1	4	1	4
RFA_00763	s2m links to Rfam database...	0.83	0.83	0.83	10	891	4	0	2	2	2
RFA_00764	s2m links to Rfam database...	0.83	0.83	0.83	10	891	4	0	2	2	2
RFA_00765	s2m links to Rfam database...	0.83	0.83	0.83	10	891	4	0	2	2	2
RFA_00767	Corona_pk3 links to Rfam database...	0.74	0.56	1.00	10	1881	2	0	0	2	8
RFA_00768	Corona_pk3 links to Rfam database...	0.45	0.44	0.47	8	1874	9	1	8	0	10
RFA_00769	Corona_pk3 links to Rfam database...	0.54	0.56	0.53	10	1934	9	4	5	0	8
RFA_00770	Corona_pk3 links to Rfam database...	0.68	0.56	0.83	10	2004	5	0	2	3	8
RFA_00773	Corona_pk3 links to Rfam database...	0.71	0.56	0.91	10	1942	4	1	0	3	8
RFA_00781	Gammaretro_CES links to Rfam database...	0.98	0.97	1.00	31	5019	2	0	0	2	1
RFA_00786	Gammaretro_CES links to Rfam database...	0.48	0.44	0.54	14	5024	14	1	11	2	18
RFA_00791	Gammaretro_CES links to Rfam database...	0.89	0.88	0.90	28	5120	6	2	1	3	4
RFA_00792	Gammaretro_CES links to Rfam database...	0.95	0.94	0.97	30	5019	3	0	1	2	2
RFA_00801	Gammaretro_CES links to Rfam database...	0.81	0.78	0.83	25	5020	8	0	5	3	7
RFA_00808	RydC links to Rfam database...	0.68	0.56	0.82	9	2005	2	0	2	0	7
RFA_00809	RydC links to Rfam database...	0.40	0.38	0.43	6	2131	8	0	8	0	10
SPR_00030	-	0.58	0.48	0.71	10	2471	5	0	4	1	11
SPR_00032	tRNA links to Rfam database...	0.85	0.81	0.89	17	2537	5	0	2	3	4
SPR_00074	tRNA links to Rfam database...	0.80	0.80	0.80	16	2830	5	4	0	1	4
SPR_00079	tRNA links to Rfam database...	0.83	0.68	1.00	13	2472	1	0	0	1	6
SPR_00127	-	0.53	0.50	0.56	9	2399	9	2	5	2	9
SPR_00191	tRNA links to Rfam database...	0.18	0.19	0.19	4	2829	18	4	13	1	17
SPR_00220	tRNA links to Rfam database...	0.23	0.25	0.23	5	3719	21	4	13	4	15
SPR_00297	tRNA links to Rfam database...	0.60	0.57	0.63	12	2756	7	1	6	0	9
SPR_00298	tRNA links to Rfam database...	0.48	0.45	0.53	9	2758	9	0	8	1	11
SPR_00327	tRNA links to Rfam database...	0.81	0.81	0.81	17	2982	4	0	4	0	4
SPR_00331	tRNA links to Rfam database...	1.00	1.00	1.00	20	2755	0	0	0	0	0
SPR_00333	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	0	0	0	0	0
SPR_00365	-	0.69	0.73	0.67	16	2532	8	1	7	0	6
SPR_00366	-	0.76	0.70	0.82	14	2539	3	1	2	0	6
SPR_00367	-	0.74	0.73	0.76	16	2464	5	0	5	0	6
SPR_00416	tRNA links to Rfam database...	0.54	0.57	0.52	12	3547	15	2	9	4	9
SPR_00461	tRNA links to Rfam database...	0.77	0.68	0.87	13	2541	3	1	1	1	6
SPR_00504	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	2	0	0	2	0
SPR_00505	tRNA links to Rfam database...	0.95	0.95	0.95	19	2906	1	0	1	0	1
SPR_00506	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00509	tRNA links to Rfam database...	0.50	0.55	0.46	11	2902	13	1	12	0	9
SPR_00512	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	2	0	0	2	0
SPR_00513	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00517	tRNA links to Rfam database...	0.87	0.85	0.89	17	2831	5	0	2	3	3
SPR_00518	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00552	tRNA links to Rfam database...	0.14	0.16	0.14	3	2680	18	4	14	0	16
SPR_00557	tRNA links to Rfam database...	0.31	0.33	0.30	7	2827	17	1	15	1	14
SPR_00610	tRNA links to Rfam database...	0.83	0.81	0.85	17	2536	4	0	3	1	4
SPR_00632	tRNA links to Rfam database...	0.87	0.85	0.89	17	2537	2	1	1	0	3
SPR_00633	tRNA links to Rfam database...	0.50	0.55	0.46	11	2532	13	2	11	0	9
SPR_01051	tRNA links to Rfam database...	1.00	1.00	1.00	21	2535	0	0	0	0	0
SRP_00001	Bacteria_large_SRP links to Rfam database...	0.94	0.95	0.93	38	6745	4	1	2	1	2
SRP_00005	-	0.86	0.88	0.84	21	3980	5	0	4	1	3
SRP_00007	-	0.79	0.78	0.80	35	11891	13	1	8	4	10
SRP_00008	Bacteria_small_SRP links to Rfam database...	1.00	1.00	1.00	25	2901	0	0	0	0	0
SRP_00038	Bacteria_small_SRP links to Rfam database...	0.05	0.06	0.06	2	5017	31	2	29	0	31
SRP_00040	Bacteria_small_SRP links to Rfam database...	0.70	0.74	0.66	23	5530	15	1	11	3	8
SRP_00042	Bacteria_small_SRP links to Rfam database...	0.56	0.60	0.54	15	3977	15	1	12	2	10
SRP_00043	Bacteria_small_SRP links to Rfam database...	0.48	0.48	0.48	14	5021	18	3	12	3	15
SRP_00044	Bacteria_small_SRP links to Rfam database...	0.89	0.91	0.88	29	6072	6	1	3	2	3
SRP_00051	Bacteria_small_SRP links to Rfam database...	0.31	0.33	0.30	10	5427	25	5	18	2	20
SRP_00054	Bacteria_small_SRP links to Rfam database...	0.25	0.25	0.26	8	5534	23	3	20	0	24
SRP_00072	Bacteria_small_SRP links to Rfam database...	0.30	0.31	0.29	9	6297	23	1	21	1	20
SRP_00074	Bacteria_small_SRP links to Rfam database...	0.16	0.17	0.15	5	6522	32	4	24	4	24
SRP_00075	Bacteria_small_SRP links to Rfam database...	0.58	0.59	0.57	20	5530	17	2	13	2	14
SRP_00077	Bacteria_small_SRP links to Rfam database...	0.36	0.38	0.35	14	6630	26	3	23	0	23
SRP_00081	Bacteria_small_SRP links to Rfam database...	0.68	0.74	0.62	23	5528	14	1	13	0	8
SRP_00084	Bacteria_small_SRP links to Rfam database...	0.78	0.79	0.77	27	5425	8	1	7	0	7
SRP_00093	-	0.47	0.56	0.39	14	14160	39	10	12	17	11
SRP_00094	Bacteria_small_SRP links to Rfam database...	0.84	0.88	0.81	21	4069	7	1	4	2	3
SRP_00095	Bacteria_small_SRP links to Rfam database...	0.50	0.52	0.48	13	3978	14	3	11	0	12
SRP_00098	Bacteria_small_SRP links to Rfam database...	0.75	0.78	0.73	29	6401	13	1	10	2	8
SRP_00105	Bacteria_small_SRP links to Rfam database...	0.15	0.15	0.16	5	5534	26	2	24	0	29
SRP_00106	Bacteria_large_SRP links to Rfam database...	0.44	0.52	0.37	13	5218	25	9	13	3	12
SRP_00107	Bacteria_small_SRP links to Rfam database...	0.12	0.16	0.11	3	3627	27	9	16	2	16
SRP_00119	-	0.83	0.84	0.83	43	12989	13	0	9	4	8
SRP_00128	Bacteria_small_SRP links to Rfam database...	0.76	0.81	0.73	29	6746	14	1	10	3	7
SRP_00135	-	0.05	0.06	0.05	3	14306	56	8	48	0	48
SRP_00139	-	0.16	0.17	0.15	2	2132	11	6	5	0	10
SRP_00141	Bacteria_small_SRP links to Rfam database...	0.73	0.71	0.76	29	6290	10	1	8	1	12
SRP_00145	Bacteria_small_SRP links to Rfam database...	0.96	0.98	0.95	39	6287	2	1	1	0	1
SRP_00146	Bacteria_small_SRP links to Rfam database...	0.82	0.83	0.81	30	5216	8	1	6	1	6
SRP_00161	Bacteria_small_SRP links to Rfam database...	0.86	0.86	0.86	19	2828	3	0	3	0	3
SRP_00162	Bacteria_small_SRP links to Rfam database...	0.89	0.91	0.88	21	2902	5	0	3	2	2
SRP_00164	Bacteria_small_SRP links to Rfam database...	0.38	0.40	0.37	14	6865	24	3	21	0	21
SRP_00193	-	0.18	0.19	0.17	7	6862	35	2	32	1	29
SRP_00200	Bacteria_small_SRP links to Rfam database...	0.79	0.81	0.78	29	6866	10	1	7	2	7
SRP_00209	Bacteria_small_SRP links to Rfam database...	0.57	0.59	0.55	16	4627	15	1	12	2	11
SRP_00214	-	0.86	0.88	0.84	21	3056	8	0	4	4	3
SRP_00216	Bacteria_small_SRP links to Rfam database...	0.95	0.96	0.93	26	3375	3	1	1	1	1
SRP_00221	-	0.77	0.81	0.74	17	3380	7	0	6	1	4
SRP_00222	Bacteria_small_SRP links to Rfam database...	0.94	0.96	0.92	24	3055	3	1	1	1	1
SRP_00227	Bacteria_small_SRP links to Rfam database...	0.92	0.94	0.91	29	5119	3	1	2	0	2
SRP_00231	Bacteria_small_SRP links to Rfam database...	0.90	0.91	0.89	31	5425	4	1	3	0	3
SRP_00233	Bacteria_small_SRP links to Rfam database...	0.91	0.88	0.94	29	5120	2	0	2	0	4
SRP_00243	Bacteria_small_SRP links to Rfam database...	0.97	0.94	1.00	29	5122	1	0	0	1	2
SRP_00250	Bacteria_small_SRP links to Rfam database...	0.77	0.81	0.74	29	6747	12	1	9	2	7
SRP_00251	Bacteria_small_SRP links to Rfam database...	0.74	0.78	0.70	28	6981	13	1	11	1	8
SRP_00271	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	3213	27	4	23	0	24
SRP_00273	Bacteria_small_SRP links to Rfam database...	0.84	0.85	0.83	34	6745	10	1	6	3	6
SRP_00274	Bacteria_small_SRP links to Rfam database...	0.93	0.95	0.92	36	6864	5	1	2	2	2
SRP_00295	Bacteria_small_SRP links to Rfam database...	0.96	0.97	0.95	37	6864	5	1	1	3	1
SRP_00303	Bacteria_small_SRP links to Rfam database...	0.81	0.84	0.77	27	6635	9	1	7	1	5
SRP_00307	-	0.27	0.28	0.27	12	12835	33	7	26	0	31
SRP_00310	Bacteria_small_SRP links to Rfam database...	0.89	0.91	0.88	21	2902	6	0	3	3	2
SRP_00312	Bacteria_small_SRP links to Rfam database...	0.35	0.37	0.34	10	4157	19	4	15	0	17
SRP_00315	Bacteria_small_SRP links to Rfam database...	0.87	0.87	0.87	20	2903	4	0	3	1	3
SRP_00318	Bacteria_small_SRP links to Rfam database...	0.87	0.87	0.87	20	2980	4	0	3	1	3
SRP_00324	Bacteria_small_SRP links to Rfam database...	0.46	0.48	0.44	14	5324	18	5	13	0	15
SRP_00325	Bacteria_small_SRP links to Rfam database...	1.00	1.00	1.00	33	4338	0	0	0	0	0
SRP_00338	Bacteria_small_SRP links to Rfam database...	0.97	0.97	0.97	35	5424	2	0	1	1	1
SRP_00342	Bacteria_small_SRP links to Rfam database...	0.61	0.64	0.59	16	3978	16	1	10	5	9
SRP_00350	Bacteria_small_SRP links to Rfam database...	0.34	0.33	0.36	9	3891	16	2	14	0	18
SRP_00356	Bacteria_small_SRP links to Rfam database...	0.84	0.87	0.81	26	5018	6	0	6	0	4
SRP_00357	Bacteria_small_SRP links to Rfam database...	0.96	0.97	0.95	35	5319	3	1	1	1	1
SRP_00365	Bacteria_small_SRP links to Rfam database...	0.94	0.93	0.96	25	3377	1	0	1	0	2
SRP_00367	Bacteria_small_SRP links to Rfam database...	0.96	0.97	0.94	34	6750	3	1	1	1	1
SRP_00369	Bacteria_small_SRP links to Rfam database...	0.96	0.97	0.94	34	5742	3	1	1	1	1
SRP_00383	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	3217	23	2	21	0	24

^top

Performance of Afold - scored lower in this pairwise comparison

1. Total counts & total scores for Afold

Total Base Pair Counts
Total TP	6136
Total TN	1569813
Total FP	5149
Total FP CONTRA	465
Total FP INCONS	3948
Total FP COMP	736
Total FN	5199

Total Scores
MCC	0.558
Average MCC ± 95% Confidence Intervals	0.596 ± 0.030
Sensitivity	0.541
Positive Predictive Value	0.582
Nr of predictions	530

^top

2. Individual counts for Afold [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
CRW_00548	5S_rRNA links to Rfam database...	0.83	0.76	0.91	29	7349	6	0	3	3	9
CRW_00552	5S_rRNA links to Rfam database...	0.32	0.31	0.34	12	7105	26	2	21	3	27
CRW_00555	5S_rRNA links to Rfam database...	0.71	0.65	0.79	26	7593	8	0	7	1	14
CRW_00567	5S_rRNA links to Rfam database...	0.69	0.63	0.76	25	7470	10	2	6	2	15
CRW_00570	5S_rRNA links to Rfam database...	0.83	0.84	0.82	31	6865	10	0	7	3	6
CRW_01484	5S_rRNA links to Rfam database...	0.18	0.18	0.18	7	7464	34	4	28	2	32
CRW_01485	5S_rRNA links to Rfam database...	0.18	0.18	0.19	7	7467	30	2	27	1	32
CRW_01487	5S_rRNA links to Rfam database...	0.21	0.20	0.24	8	7469	26	3	23	0	33
CRW_01489	5S_rRNA links to Rfam database...	0.82	0.74	0.91	29	7471	6	0	3	3	10
CRW_01491	5S_rRNA links to Rfam database...	0.70	0.63	0.79	27	8351	11	0	7	4	16
CRW_01496	5S_rRNA links to Rfam database...	0.81	0.73	0.91	32	8093	9	0	3	6	12
CRW_01497	5S_rRNA links to Rfam database...	0.54	0.45	0.64	18	7112	14	0	10	4	22
CRW_01498	5S_rRNA links to Rfam database...	0.88	0.81	0.95	35	8091	4	0	2	2	8
CRW_01499	5S_rRNA links to Rfam database...	0.45	0.44	0.47	18	7963	21	3	17	1	23
CRW_01500	5S_rRNA links to Rfam database...	0.86	0.79	0.94	30	7718	6	0	2	4	8
CRW_01502	5S_rRNA links to Rfam database...	0.92	0.91	0.93	42	8340	7	0	3	4	4
CRW_01507	5S_rRNA links to Rfam database...	0.78	0.76	0.82	31	7465	9	0	7	2	10
CRW_01508	5S_rRNA links to Rfam database...	0.83	0.79	0.87	33	7963	11	0	5	6	9
CRW_01521	5S_rRNA links to Rfam database...	0.71	0.67	0.75	24	6871	12	0	8	4	12
CRW_01536	5S_rRNA links to Rfam database...	0.88	0.86	0.89	32	6985	4	0	4	0	5
CRW_01537	5S_rRNA links to Rfam database...	0.70	0.65	0.75	24	7108	14	0	8	6	13
CRW_01539	5S_rRNA links to Rfam database...	0.81	0.76	0.88	28	7108	10	0	4	6	9
CRW_01541	5S_rRNA links to Rfam database...	0.29	0.30	0.29	11	7102	28	6	21	1	26
CRW_01548	5S_rRNA links to Rfam database...	0.74	0.70	0.79	26	6988	12	0	7	5	11
CRW_01559	5S_rRNA links to Rfam database...	0.76	0.73	0.79	27	7226	13	0	7	6	10
CRW_01562	5S_rRNA links to Rfam database...	0.70	0.68	0.74	25	7106	12	1	8	3	12
CRW_01563	5S_rRNA links to Rfam database...	0.57	0.51	0.63	19	6873	12	2	9	1	18
CRW_01566	5S_rRNA links to Rfam database...	0.66	0.65	0.67	24	7104	15	0	12	3	13
CRW_01570	5S_rRNA links to Rfam database...	0.75	0.70	0.81	26	7108	12	0	6	6	11
CRW_01572	5S_rRNA links to Rfam database...	0.31	0.30	0.33	11	6988	22	4	18	0	26
CRW_01578	5S_rRNA links to Rfam database...	0.78	0.73	0.84	27	7108	10	0	5	5	10
CRW_01580	5S_rRNA links to Rfam database...	0.56	0.49	0.64	18	7112	16	0	10	6	19
CRW_01581	5S_rRNA links to Rfam database...	0.17	0.16	0.19	6	7109	25	2	23	0	31
CRW_01583	5S_rRNA links to Rfam database...	0.79	0.76	0.82	28	7106	10	0	6	4	9
CRW_01590	5S_rRNA links to Rfam database...	0.21	0.22	0.21	8	7102	30	6	24	0	29
CRW_01603	5S_rRNA links to Rfam database...	0.82	0.78	0.85	29	7106	8	0	5	3	8
CRW_01605	5S_rRNA links to Rfam database...	0.73	0.70	0.76	26	7106	13	0	8	5	11
CRW_01608	5S_rRNA links to Rfam database...	0.27	0.27	0.28	10	8349	27	1	25	1	27
CRW_01613	5S_rRNA links to Rfam database...	0.78	0.76	0.80	28	6986	10	0	7	3	9
CRW_01620	5S_rRNA links to Rfam database...	0.86	0.86	0.86	32	6984	8	0	5	3	5
CRW_01621	5S_rRNA links to Rfam database...	0.64	0.62	0.66	23	7105	16	0	12	4	14
CRW_01623	5S_rRNA links to Rfam database...	0.78	0.73	0.84	27	7108	6	0	5	1	10
NDB_00014	-	0.89	0.80	1.00	8	182	0	0	0	0	2
NDB_00015	-	0.38	0.40	0.40	4	266	6	0	6	0	6
NDB_00016	-	0.91	0.83	1.00	10	266	0	0	0	0	2
NDB_00047	-	0.91	0.83	1.00	10	266	0	0	0	0	2
NDB_00048	-	-0.02	0.00	0.00	0	1514	26	0	26	0	28
NDB_00049	-	0.92	0.85	1.00	11	314	0	0	0	0	2
PDB_00001	-	0.81	0.67	1.00	8	268	0	0	0	0	4
PDB_00002	-	0.87	0.88	0.88	7	202	1	0	1	0	1
PDB_00003	-	0.86	0.75	1.00	9	342	0	0	0	0	3
PDB_00004	-	0.86	0.74	1.00	14	806	0	0	0	0	5
PDB_00006	-	1.00	1.00	1.00	14	689	0	0	0	0	0
PDB_00011	-	0.91	0.83	1.00	10	266	0	0	0	0	2
PDB_00012	mir-TAR links to Rfam database...	1.00	1.00	1.00	7	399	3	0	0	3	0
PDB_00013	-	1.00	1.00	1.00	10	396	1	0	0	1	0
PDB_00017	-	0.77	0.60	1.00	9	694	0	0	0	0	6
PDB_00018	-	0.20	0.20	0.22	4	1017	14	2	12	0	16
PDB_00019	-	0.74	0.75	0.75	6	245	2	0	2	0	2
PDB_00020	-	0.38	0.35	0.44	7	764	9	0	9	0	13
PDB_00021	-	1.00	1.00	1.00	8	182	0	0	0	0	0
PDB_00022	-	0.94	0.89	1.00	8	245	0	0	0	0	1
PDB_00032	-	0.89	0.80	1.00	12	891	1	0	0	1	3
PDB_00034	-	0.66	0.58	0.78	7	369	2	0	2	0	5
PDB_00035	-	0.94	0.89	1.00	8	202	0	0	0	0	1
PDB_00036	-	-0.01	0.00	0.00	0	3461	27	1	24	2	27
PDB_00039	-	-0.01	0.00	0.00	0	5318	38	0	38	0	45
PDB_00040	-	0.83	0.70	1.00	7	269	0	0	0	0	3
PDB_00043	-	0.87	0.77	1.00	10	425	0	0	0	0	3
PDB_00048	-	0.82	0.78	0.88	7	292	3	0	1	2	2
PDB_00049	-	0.83	0.70	1.00	7	224	0	0	0	0	3
PDB_00054	-	0.77	0.60	1.00	6	184	0	0	0	0	4
PDB_00056	-	-0.02	0.00	0.00	0	618	12	0	12	0	16
PDB_00057	-	1.00	1.00	1.00	10	341	1	0	0	1	0
PDB_00065	-	0.77	0.60	1.00	6	400	1	0	0	1	4
PDB_00074	-	0.72	0.67	0.80	8	368	2	0	2	0	4
PDB_00081	-	0.94	0.89	1.00	8	182	0	0	0	0	1
PDB_00088	-	0.86	0.75	1.00	9	426	1	0	0	1	3
PDB_00096	-	0.82	0.75	0.90	9	315	1	0	1	0	3
PDB_00098	-	0.81	0.67	1.00	4	227	0	0	0	0	2
PDB_00104	-	-0.02	0.00	0.00	0	616	14	0	14	0	16
PDB_00107	-	0.95	0.91	1.00	10	455	1	0	0	1	1
PDB_00108	-	1.00	1.00	1.00	7	203	0	0	0	0	0
PDB_00110	-	1.00	1.00	1.00	7	246	0	0	0	0	0
PDB_00113	-	0.94	0.89	1.00	8	223	0	0	0	0	1
PDB_00115	-	-0.03	0.00	0.00	0	547	14	0	14	0	16
PDB_00116	-	0.60	0.50	0.75	3	227	2	0	1	1	3
PDB_00119	-	0.95	0.90	1.00	9	244	0	0	0	0	1
PDB_00120	-	0.95	0.90	1.00	9	222	0	0	0	0	1
PDB_00121	-	0.95	0.90	1.00	9	222	0	0	0	0	1
PDB_00122	-	0.91	0.83	1.00	10	290	0	0	0	0	2
PDB_00123	-	-0.01	0.00	0.00	0	4150	36	0	36	0	36
PDB_00125	-	-0.03	0.00	0.00	0	226	5	0	5	0	10
PDB_00130	-	1.00	1.00	1.00	6	270	2	0	0	2	0
PDB_00132	-	0.86	0.75	1.00	9	426	0	0	0	0	3
PDB_00136	-	0.76	0.73	0.79	19	2391	7	0	5	2	7
PDB_00138	-	0.72	0.63	0.83	5	372	1	0	1	0	3
PDB_00142	-	0.91	0.83	1.00	10	425	0	0	0	0	2
PDB_00149	-	0.89	0.80	1.00	12	691	0	0	0	0	3
PDB_00150	-	0.95	0.90	1.00	9	291	1	0	0	1	1
PDB_00153	-	0.95	0.90	1.00	9	244	0	0	0	0	1
PDB_00155	-	0.86	0.75	1.00	6	319	0	0	0	0	2
PDB_00157	-	0.28	0.24	0.33	7	3300	17	0	14	3	22
PDB_00158	-	0.77	0.60	1.00	12	849	0	0	0	0	8
PDB_00159	-	0.85	0.73	1.00	8	343	1	0	0	1	3
PDB_00160	-	0.94	0.89	1.00	8	268	0	0	0	0	1
PDB_00168	-	0.61	0.67	0.57	4	293	4	2	1	1	2
PDB_00169	-	0.83	0.70	1.00	7	224	0	0	0	0	3
PDB_00170	-	0.80	0.75	0.86	12	616	2	0	2	0	4
PDB_00171	-	0.50	0.42	0.63	5	427	3	0	3	0	7
PDB_00174	-	0.90	0.82	1.00	18	1017	0	0	0	0	4
PDB_00178	-	0.90	0.82	1.00	9	519	1	0	0	1	2
PDB_00181	-	0.88	0.78	1.00	7	224	0	0	0	0	2
PDB_00182	-	0.88	0.78	1.00	7	246	0	0	0	0	2
PDB_00183	-	0.91	0.83	1.00	19	1466	0	0	0	0	4
PDB_00184	-	0.87	0.77	1.00	10	551	0	0	0	0	3
PDB_00185	-	0.55	0.50	0.61	14	2903	10	0	9	1	14
PDB_00190	-	0.95	0.90	1.00	9	222	0	0	0	0	1
PDB_00192	-	0.24	0.19	0.30	7	3217	16	0	16	0	29
PDB_00195	-	0.26	0.24	0.29	10	3452	24	0	24	0	32
PDB_00197	-	1.00	1.00	1.00	7	293	3	0	0	3	0
PDB_00200	-	0.94	0.89	1.00	8	202	0	0	0	0	1
PDB_00201	-	0.77	0.60	1.00	6	319	0	0	0	0	4
PDB_00202	-	0.96	0.93	1.00	13	548	1	0	0	1	1
PDB_00203	-	0.96	0.92	1.00	12	549	0	0	0	0	1
PDB_00205	-	0.84	0.71	1.00	10	425	0	0	0	0	4
PDB_00206	-	1.00	1.00	1.00	8	268	1	0	0	1	0
PDB_00207	-	0.92	0.86	1.00	12	366	0	0	0	0	2
PDB_00209	-	-0.02	0.00	0.00	0	551	10	2	8	0	11
PDB_00211	-	0.89	0.80	1.00	8	182	0	0	0	0	2
PDB_00213	Gammaretro_CES links to Rfam database...	0.87	0.80	0.94	33	5015	2	0	2	0	8
PDB_00214	-	0.74	0.64	0.88	7	398	2	0	1	1	4
PDB_00215	-	-0.02	0.00	0.00	0	1106	22	0	22	0	24
PDB_00219	-	1.00	1.00	1.00	7	203	0	0	0	0	0
PDB_00221	-	0.88	0.78	1.00	7	246	0	0	0	0	2
PDB_00224	-	0.93	0.88	1.00	7	183	0	0	0	0	1
PDB_00234	-	0.81	0.67	1.00	8	268	0	0	0	0	4
PDB_00236	-	-0.02	0.00	0.00	0	1110	18	0	18	0	24
PDB_00237	-	0.88	0.78	1.00	7	371	1	0	0	1	2
PDB_00239	-	0.78	0.61	1.00	11	809	0	0	0	0	7
PDB_00243	-	0.67	0.58	0.78	7	621	3	0	2	1	5
PDB_00248	-	0.91	0.83	1.00	10	266	0	0	0	0	2
PDB_00249	-	-0.02	0.00	0.00	0	273	3	0	3	0	11
PDB_00250	-	0.85	0.76	0.95	19	1750	3	0	1	2	6
PDB_00252	-	-0.02	0.00	0.00	0	765	16	2	13	1	15
PDB_00254	-	-0.04	0.00	0.00	0	266	10	0	10	0	12
PDB_00257	-	0.76	0.73	0.80	8	341	2	0	2	0	3
PDB_00261	-	0.86	0.75	1.00	12	484	0	0	0	0	4
PDB_00262	-	0.25	0.25	0.27	6	1106	16	0	16	0	18
PDB_00267	-	-0.03	0.00	0.00	0	366	12	0	12	0	14
PDB_00286	-	-0.03	0.00	0.00	0	184	8	0	6	2	6
PDB_00312	-	1.00	1.00	1.00	9	426	0	0	0	0	0
PDB_00317	-	1.00	1.00	1.00	10	368	1	0	0	1	0
PDB_00339	-	0.75	0.63	0.91	10	655	1	0	1	0	6
PDB_00341	-	-0.02	0.00	0.00	0	691	12	0	12	0	16
PDB_00342	-	-0.02	0.00	0.00	0	762	18	0	18	0	10
PDB_00343	-	0.68	0.62	0.76	13	1579	5	0	4	1	8
PDB_00347	-	0.89	0.80	1.00	16	1160	0	0	0	0	4
PDB_00349	-	0.64	0.64	0.64	9	932	5	0	5	0	5
PDB_00351	-	-0.02	0.00	0.00	0	554	7	0	7	0	12
PDB_00352	-	0.89	0.79	1.00	15	1210	0	0	0	0	4
PDB_00357	-	-0.01	0.00	0.00	0	769	11	4	7	0	10
PDB_00358	-	0.00	0.00	0.00	0	10539	46	6	40	0	47
PDB_00365	-	0.96	0.93	1.00	13	422	0	0	0	0	1
PDB_00371	-	0.89	0.80	1.00	12	549	0	0	0	0	3
PDB_00377	-	0.83	0.83	0.83	10	516	2	0	2	0	2
PDB_00378	-	0.96	0.93	1.00	13	690	0	0	0	0	1
PDB_00400	-	-0.01	0.00	0.00	0	3136	25	0	24	1	34
PDB_00402	tRNA links to Rfam database...	0.15	0.17	0.15	4	2748	23	2	21	0	19
PDB_00411	-	0.81	0.67	1.00	10	585	0	0	0	0	5
PDB_00417	-	0.10	0.11	0.11	6	14141	49	6	43	0	50
PDB_00420	-	0.89	0.80	1.00	8	488	3	0	0	3	2
PDB_00431	tRNA links to Rfam database...	0.65	0.65	0.65	13	2191	9	0	7	2	7
PDB_00433	-	0.18	0.18	0.20	6	6640	24	2	22	0	28
PDB_00447	-	0.41	0.36	0.47	16	7106	18	6	12	0	28
PDB_00454	-	-0.01	0.00	0.00	0	2669	32	0	32	0	32
PDB_00481	-	-0.01	0.00	0.00	0	1870	21	0	21	0	26
PDB_00513	-	0.85	0.86	0.86	6	224	1	0	1	0	1
PDB_00522	-	0.56	0.56	0.59	10	1111	7	0	7	0	8
PDB_00526	-	-0.01	0.00	0.00	0	298	6	0	2	4	3
PDB_00527	-	-0.01	0.00	0.00	0	297	6	0	3	3	5
PDB_00537	-	0.94	0.89	1.00	8	398	2	0	0	2	1
PDB_00553	mir-TAR links to Rfam database...	1.00	1.00	1.00	11	454	0	0	0	0	0
PDB_00565	-	0.77	0.70	0.85	35	8087	7	0	6	1	15
PDB_00570	-	-0.01	0.00	0.00	0	2257	21	2	19	0	22
PDB_00571	tRNA links to Rfam database...	-0.01	0.00	0.00	0	3302	20	5	14	1	25
PDB_00573	-	0.40	0.41	0.39	14	6634	24	4	18	2	20
PDB_00584	-	0.47	0.41	0.54	7	1472	6	0	6	0	10
PDB_00599	-	0.96	0.93	1.00	13	548	0	0	0	0	1
PDB_00603	-	0.95	0.90	1.00	9	244	0	0	0	0	1
PDB_00611	-	-0.01	0.00	0.00	0	770	10	1	9	0	11
PDB_00617	-	0.95	0.90	1.00	9	267	0	0	0	0	1
PDB_00627	-	0.72	0.71	0.75	12	1637	6	0	4	2	5
PDB_00629	-	-0.01	0.00	0.00	0	1637	16	0	16	0	23
PDB_00637	-	0.93	0.90	0.95	19	2326	4	0	1	3	2
PDB_00648	-	0.81	0.85	0.79	11	847	3	0	3	0	2
PDB_00679	-	0.18	0.18	0.19	10	17526	50	3	39	8	46
PDB_00681	-	-0.01	0.00	0.00	0	1256	19	2	17	0	19
PDB_00682	-	-0.03	0.00	0.00	0	482	14	0	14	0	16
PDB_00686	-	0.94	0.89	1.00	17	686	0	0	0	0	2
PDB_00687	-	0.91	0.83	1.00	10	620	2	0	0	2	2
PDB_00692	-	0.11	0.10	0.15	2	1212	11	0	11	0	18
PDB_00693	-	0.94	0.88	1.00	15	1161	0	0	0	0	2
PDB_00702	-	-0.01	0.00	0.00	0	4337	34	2	32	0	36
PDB_00705	-	1.00	1.00	1.00	8	245	1	0	0	1	0
PDB_00709	-	-0.02	0.00	0.00	0	766	14	0	14	0	16
PDB_00710	-	-0.02	0.00	0.00	0	769	11	0	11	0	16
PDB_00713	-	0.24	0.24	0.25	5	1996	15	0	15	0	16
PDB_00716	HDV_ribozyme links to Rfam database...	-0.01	0.00	0.00	0	2677	25	1	23	1	23
PDB_00724	-	-0.01	0.00	0.00	0	2121	24	0	24	0	29
PDB_00725	-	0.74	0.67	0.83	10	583	2	0	2	0	5
PDB_00726	-	0.88	0.78	1.00	7	344	1	0	0	1	2
PDB_00727	-	1.00	1.00	1.00	7	554	3	0	0	3	0
PDB_00728	-	0.97	0.93	1.00	14	482	0	0	0	0	1
PDB_00733	-	-0.01	0.00	0.00	0	2897	29	1	28	0	30
PDB_00734	-	0.83	0.70	1.00	7	224	0	0	0	0	3
PDB_00737	-	0.95	0.91	1.00	10	341	0	0	0	0	1
PDB_00740	-	0.79	0.64	1.00	7	224	0	0	0	0	4
PDB_00741	Entero_5_CRE links to Rfam database...	0.87	0.76	1.00	13	690	0	0	0	0	4
PDB_00746	-	-0.01	0.00	0.00	0	4718	36	2	33	1	38
PDB_00750	-	0.79	0.73	0.86	36	11893	10	0	6	4	13
PDB_00751	-	0.87	0.77	1.00	10	585	2	0	0	2	3
PDB_00752	-	0.27	0.25	0.31	11	7345	27	0	25	2	33
PDB_00754	-	0.20	0.25	0.18	3	1468	16	4	10	2	9
PDB_00800	-	0.30	0.31	0.30	9	2050	21	1	20	0	20
PDB_00806	-	0.45	0.40	0.53	10	1811	10	0	9	1	15
PDB_00809	-	0.88	0.79	1.00	11	485	0	0	0	0	3
PDB_00810	s2m links to Rfam database...	0.77	0.71	0.86	12	1067	2	0	2	0	5
PDB_00815	-	0.58	0.56	0.63	5	622	5	0	3	2	4
PDB_00823	-	-0.03	0.00	0.00	0	185	5	0	5	0	9
PDB_00828	Purine links to Rfam database...	0.88	0.78	1.00	21	2464	0	0	0	0	6
PDB_00829	Purine links to Rfam database...	0.82	0.71	0.94	17	2260	1	0	1	0	7
PDB_00855	-	1.00	1.00	1.00	10	455	1	0	0	1	0
PDB_00864	-	0.64	0.54	0.76	34	12996	12	0	11	1	29
PDB_00865	-	0.96	0.92	1.00	11	340	0	0	0	0	1
PDB_00870	-	-0.02	0.00	0.00	0	1109	19	0	19	0	16
PDB_00871	-	-0.02	0.00	0.00	0	1106	22	0	22	0	24
PDB_00873	-	-0.01	0.00	0.00	0	4514	46	0	46	0	48
PDB_00874	-	-0.02	0.00	0.00	0	931	15	0	15	0	20
PDB_00876	HIV_FE links to Rfam database...	0.97	0.95	1.00	19	971	0	0	0	0	1
PDB_00878	-	0.96	0.92	1.00	11	485	0	0	0	0	1
PDB_00879	-	0.85	0.74	0.97	29	5020	3	0	1	2	10
PDB_00885	-	0.97	0.94	1.00	17	803	0	0	0	0	1
PDB_00886	-	-0.01	0.00	0.00	0	4148	38	0	38	0	40
PDB_00890	-	-0.02	0.00	0.00	0	689	14	2	12	0	14
PDB_00891	-	-0.02	0.00	0.00	0	927	19	6	13	0	15
PDB_00892	-	-0.01	0.00	0.00	0	2533	23	4	19	0	15
PDB_00897	-	0.21	0.20	0.22	12	11422	42	4	38	0	49
PDB_00906	-	-0.01	0.00	0.00	0	6630	40	0	40	0	48
PDB_00924	-	0.70	0.67	0.75	24	3623	8	0	8	0	12
PDB_00925	-	0.95	0.91	1.00	10	341	1	0	0	1	1
PDB_00928	-	0.66	0.63	0.71	5	293	2	0	2	0	3
PDB_00929	-	-0.02	0.00	0.00	0	768	12	0	12	0	20
PDB_00932	-	0.77	0.77	0.77	10	807	3	0	3	0	3
PDB_00937	-	0.94	0.89	1.00	16	614	0	0	0	0	2
PDB_00943	-	0.26	0.27	0.27	4	1416	13	2	9	2	11
PDB_00945	-	0.84	0.80	0.89	8	456	2	0	1	1	2
PDB_00960	-	-0.03	0.00	0.00	0	394	12	2	10	0	10
PDB_00966	-	-0.03	0.00	0.00	0	244	9	2	7	0	7
PDB_00974	-	-0.02	0.00	0.00	0	371	7	2	5	0	9
PDB_00979	-	0.00	0.00	0.00	0	11734	49	9	38	2	48
PDB_00980	-	0.39	0.41	0.37	17	11129	29	6	23	0	24
PDB_00986	-	0.72	0.64	0.82	9	424	2	0	2	0	5
PDB_00987	-	0.79	0.63	1.00	10	551	0	0	0	0	6
PDB_00989	-	0.79	0.72	0.87	26	2973	4	0	4	0	10
PDB_01000	-	0.39	0.43	0.36	13	10842	33	9	14	10	17
PDB_01009	tRNA links to Rfam database...	0.52	0.57	0.48	12	2460	13	5	8	0	9
PDB_01025	-	1.00	1.00	1.00	9	244	0	0	0	0	0
PDB_01035	-	0.79	0.69	0.90	18	1520	2	0	2	0	8
PDB_01040	-	0.30	0.30	0.32	6	1109	13	0	13	0	14
PDB_01044	-	0.94	0.94	0.94	15	930	4	0	1	3	1
PDB_01045	-	0.98	0.96	1.00	22	1203	1	0	0	1	1
PDB_01050	UnaL2 links to Rfam database...	0.96	0.92	1.00	12	618	2	0	0	2	1
PDB_01051	Telomerase-cil links to Rfam database...	0.75	0.69	0.82	9	892	6	0	2	4	4
PDB_01053	tRNA links to Rfam database...	0.94	0.94	0.94	15	1362	1	0	1	0	1
PDB_01054	-	0.43	0.44	0.42	19	11736	27	6	20	1	24
PDB_01056	-	0.94	0.89	1.00	8	245	1	0	0	1	1
PDB_01057	-	1.00	1.00	1.00	8	202	0	0	0	0	0
PDB_01060	-	-0.01	0.00	0.00	0	1990	26	0	26	0	21
PDB_01061	-	0.14	0.15	0.16	6	3122	32	0	32	0	34
PDB_01065	-	0.89	0.80	1.00	8	223	0	0	0	0	2
PDB_01070	-	0.31	0.30	0.33	16	12671	33	2	31	0	38
PDB_01071	-	0.69	0.62	0.80	8	396	2	0	2	0	5
PDB_01074	-	-0.01	0.00	0.00	0	2746	29	3	26	0	25
PDB_01075	-	0.76	0.69	0.85	22	2389	4	0	4	0	10
PDB_01077	-	0.86	0.79	0.94	15	1937	2	0	1	1	4
PDB_01084	-	1.00	1.00	1.00	7	224	0	0	0	0	0
PDB_01092	glmS links to Rfam database...	0.69	0.60	0.79	31	10114	11	1	7	3	21
PDB_01097	-	0.93	0.88	1.00	7	203	0	0	0	0	1
PDB_01099	-	0.85	0.73	1.00	8	268	0	0	0	0	3
PDB_01100	-	0.85	0.73	1.00	16	1469	0	0	0	0	6
PDB_01108	-	1.00	1.00	1.00	9	222	0	0	0	0	0
PDB_01117	-	0.80	0.65	1.00	11	769	0	0	0	0	6
PDB_01119	-	0.92	0.86	1.00	12	618	0	0	0	0	2
PDB_01126	-	-0.01	0.00	0.00	0	3051	30	4	26	0	28
PDB_01128	-	0.94	0.89	1.00	24	2751	0	0	0	0	3
PDB_01130	-	-0.01	0.00	0.00	0	1746	24	6	18	0	20
PDB_01133	-	1.00	1.00	1.00	10	341	0	0	0	0	0
PDB_01135	-	-0.02	0.00	0.00	0	396	10	2	8	0	9
PDB_01137	-	-0.02	0.00	0.00	0	317	8	2	6	0	8
PDB_01145	-	-0.02	0.00	0.00	0	764	16	4	12	0	14
PDB_01150	-	0.93	0.88	1.00	7	224	0	0	0	0	1
PDB_01152	HIV_FS2 links to Rfam database...	0.96	0.93	1.00	13	548	0	0	0	0	1
PDB_01154	-	0.90	0.82	1.00	9	397	0	0	0	0	2
PDB_01156	-	-0.01	0.00	0.00	0	3797	31	0	31	0	35
PDB_01160	-	0.33	0.35	0.32	7	2058	15	4	11	0	13
PDB_01162	-	0.55	0.56	0.56	5	1531	8	0	4	4	4
PDB_01163	-	0.98	0.95	1.00	21	1014	0	0	0	0	1
PDB_01167	-	0.86	0.75	1.00	6	184	0	0	0	0	2
PDB_01168	-	0.86	0.75	1.00	6	184	0	0	0	0	2
PDB_01178	-	0.72	0.64	0.82	9	517	2	0	2	0	5
PDB_01187	-	0.55	0.50	0.60	26	9968	17	0	17	0	26
PDB_01199	-	0.18	0.17	0.22	4	2127	14	0	14	0	20
PDB_01205	-	-0.02	0.00	0.00	0	1015	20	4	16	0	18
PDB_01208	-	0.83	0.70	1.00	14	1162	0	0	0	0	6
PDB_01209	-	0.89	0.80	1.00	16	1160	0	0	0	0	4
PDB_01212	-	0.83	0.70	1.00	14	1162	0	0	0	0	6
PDB_01213	-	0.69	0.61	0.79	11	1067	3	0	3	0	7
PDB_01216	-	0.89	0.80	1.00	16	1160	0	0	0	0	4
PDB_01219	-	-0.02	0.00	0.00	0	928	18	0	18	0	20
PDB_01237	-	1.00	1.00	1.00	8	268	0	0	0	0	0
PDB_01249	-	-0.01	0.00	0.00	0	11111	64	12	52	0	54
PDB_01251	-	0.87	0.77	1.00	10	315	0	0	0	0	3
PDB_01255	-	0.68	0.61	0.77	34	12517	17	0	10	7	22
PDB_01260	-	-0.01	0.00	0.00	0	1809	21	0	21	0	25
PDB_01262	-	0.78	0.63	1.00	5	185	0	0	0	0	3
PDB_01281	-	-0.03	0.00	0.00	0	366	12	0	12	0	14
PDB_01299	-	-0.01	0.00	0.00	0	893	10	2	8	0	15
PDB_01309	-	-0.01	0.00	0.00	0	9118	62	9	53	0	39
PDB_01313	-	-0.02	0.00	0.00	0	271	5	1	4	0	8
PDB_01325	-	0.91	0.83	1.00	10	266	0	0	0	0	2
PDB_01332	-	1.00	1.00	1.00	9	342	0	0	0	0	0
PDB_01337	-	-0.02	0.00	0.00	0	551	10	2	8	0	11
PDB_01338	-	-0.03	0.00	0.00	0	268	8	2	6	0	8
PDB_01340	-	-0.02	0.00	0.00	0	294	6	0	6	0	8
RFA_00389	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00390	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00391	Hammerhead_3 links to Rfam database...	0.93	0.87	1.00	13	1418	2	0	0	2	2
RFA_00396	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	2	0	0	2	1
RFA_00402	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	1	0	0	1	0
RFA_00409	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	2	0	0	2	1
RFA_00416	Hammerhead_3 links to Rfam database...	0.93	0.93	0.93	14	1470	4	0	1	3	1
RFA_00420	-	1.00	1.00	1.00	15	3306	13	0	0	13	0
RFA_00425	Hammerhead_3 links to Rfam database...	0.93	0.87	1.00	13	1640	5	0	0	5	2
RFA_00427	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1471	3	0	0	3	1
RFA_00433	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00434	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00436	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00440	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1470	2	0	0	2	0
RFA_00442	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00444	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1525	2	0	0	2	0
RFA_00446	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1471	3	0	0	3	1
RFA_00449	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1471	3	0	0	3	1
RFA_00582	Y_RNA links to Rfam database...	0.87	0.87	0.87	13	5980	23	0	2	21	2
RFA_00583	Y_RNA links to Rfam database...	0.41	0.40	0.43	6	4936	22	0	8	14	9
RFA_00585	Y_RNA links to Rfam database...	0.87	0.87	0.87	13	4836	13	0	2	11	2
RFA_00587	Y_RNA links to Rfam database...	0.87	0.87	0.87	13	4836	14	0	2	12	2
RFA_00588	Y_RNA links to Rfam database...	0.79	0.73	0.85	11	4547	14	0	2	12	4
RFA_00589	Y_RNA links to Rfam database...	0.79	0.73	0.85	11	4358	18	0	2	16	4
RFA_00590	-	0.86	0.80	0.92	12	5343	15	0	1	14	3
RFA_00594	Y_RNA links to Rfam database...	0.83	0.80	0.86	12	2761	13	0	2	11	3
RFA_00596	Y_RNA links to Rfam database...	0.00	0.00	0.00	0	5980	24	4	11	9	15
RFA_00603	Telomerase-cil links to Rfam database...	0.64	0.69	0.60	24	13490	20	4	12	4	11
RFA_00604	Telomerase-cil links to Rfam database...	0.72	0.74	0.70	26	13493	24	2	9	13	9
RFA_00607	Telomerase-cil links to Rfam database...	0.57	0.61	0.54	22	17725	25	6	13	6	14
RFA_00609	Telomerase-cil links to Rfam database...	0.75	0.76	0.74	28	17917	28	2	8	18	9
RFA_00610	Telomerase-cil links to Rfam database...	0.77	0.76	0.78	28	17169	23	2	6	15	9
RFA_00611	Telomerase-cil links to Rfam database...	0.79	0.77	0.82	27	13008	13	0	6	7	8
RFA_00613	Telomerase-cil links to Rfam database...	0.61	0.60	0.62	21	12846	17	4	9	4	14
RFA_00615	Telomerase-cil links to Rfam database...	0.51	0.51	0.51	18	13331	18	8	9	1	17
RFA_00632	HDV_ribozyme links to Rfam database...	0.40	0.39	0.41	11	4068	18	0	16	2	17
RFA_00636	HDV_ribozyme links to Rfam database...	0.42	0.43	0.43	12	3977	17	2	14	1	16
RFA_00644	Vimentin3 links to Rfam database...	-0.01	0.00	0.00	0	2681	21	4	16	1	18
RFA_00645	Vimentin3 links to Rfam database...	-0.01	0.00	0.00	0	2401	15	3	11	1	18
RFA_00649	Vimentin3 links to Rfam database...	0.65	0.61	0.69	11	2129	8	1	4	3	7
RFA_00653	Vimentin3 links to Rfam database...	0.34	0.33	0.35	6	2128	12	3	8	1	12
RFA_00654	Vimentin3 links to Rfam database...	0.27	0.28	0.28	5	2397	14	2	11	1	13
RFA_00658	Hammerhead_1 links to Rfam database...	0.69	0.64	0.75	9	1116	5	0	3	2	5
RFA_00659	Hammerhead_1 links to Rfam database...	0.30	0.29	0.33	4	1116	10	1	7	2	10
RFA_00664	Hammerhead_1 links to Rfam database...	0.07	0.07	0.09	1	979	11	0	10	1	13
RFA_00667	Hammerhead_1 links to Rfam database...	0.30	0.29	0.33	4	978	8	1	7	0	10
RFA_00668	Hammerhead_1 links to Rfam database...	0.41	0.43	0.40	6	975	9	0	9	0	8
RFA_00672	Hammerhead_1 links to Rfam database...	0.17	0.15	0.20	2	893	9	0	8	1	11
RFA_00673	Hammerhead_1 links to Rfam database...	0.42	0.36	0.50	5	1118	6	0	5	1	9
RFA_00674	Hammerhead_1 links to Rfam database...	0.69	0.71	0.67	10	1113	6	0	5	1	4
RFA_00675	Hammerhead_1 links to Rfam database...	0.29	0.29	0.31	4	977	9	1	8	0	10
RFA_00677	Hammerhead_1 links to Rfam database...	0.42	0.43	0.43	6	976	9	0	8	1	8
RFA_00678	Hammerhead_1 links to Rfam database...	0.66	0.64	0.69	9	933	4	0	4	0	5
RFA_00680	Hammerhead_1 links to Rfam database...	0.74	0.71	0.77	10	1115	6	0	3	3	4
RFA_00683	-	0.25	0.21	0.30	3	1025	8	0	7	1	11
RFA_00684	Hammerhead_1 links to Rfam database...	0.66	0.64	0.69	9	977	5	0	4	1	5
RFA_00685	Hammerhead_1 links to Rfam database...	0.42	0.36	0.50	5	980	6	0	5	1	9
RFA_00695	Hammerhead_1 links to Rfam database...	0.67	0.64	0.69	9	7008	29	1	3	25	5
RFA_00703	Hammerhead_1 links to Rfam database...	0.67	0.64	0.69	9	4265	18	1	3	14	5
RFA_00704	Hammerhead_1 links to Rfam database...	0.48	0.43	0.55	6	979	7	0	5	2	8
RFA_00705	Hammerhead_1 links to Rfam database...	0.69	0.71	0.67	10	1020	5	0	5	0	4
RFA_00706	Hammerhead_1 links to Rfam database...	0.44	0.36	0.56	5	1026	4	0	4	0	9
RFA_00707	Hammerhead_1 links to Rfam database...	0.07	0.07	0.10	1	1025	9	3	6	0	13
RFA_00708	Hammerhead_1 links to Rfam database...	0.47	0.36	0.63	5	1027	3	0	3	0	9
RFA_00709	Hammerhead_1 links to Rfam database...	0.16	0.14	0.20	2	980	9	0	8	1	12
RFA_00710	Hammerhead_1 links to Rfam database...	0.23	0.21	0.27	3	979	8	0	8	0	11
RFA_00711	Hammerhead_1 links to Rfam database...	0.40	0.36	0.45	5	1024	6	0	6	0	9
RFA_00716	Hammerhead_1 links to Rfam database...	0.06	0.07	0.08	1	933	12	0	12	0	13
RFA_00717	Hammerhead_1 links to Rfam database...	0.64	0.64	0.64	9	889	5	0	5	0	5
RFA_00720	-	0.41	0.43	0.40	6	1161	9	2	7	0	8
RFA_00721	-	0.29	0.29	0.31	4	1163	9	2	7	0	10
RFA_00730	s2m links to Rfam database...	0.69	0.67	0.73	8	892	4	1	2	1	4
RFA_00731	s2m links to Rfam database...	0.66	0.67	0.67	8	891	5	1	3	1	4
RFA_00733	s2m links to Rfam database...	0.66	0.67	0.67	8	891	5	1	3	1	4
RFA_00734	s2m links to Rfam database...	0.61	0.67	0.57	8	889	8	1	5	2	4
RFA_00736	s2m links to Rfam database...	0.66	0.67	0.67	8	891	5	1	3	1	4
RFA_00737	s2m links to Rfam database...	1.00	1.00	1.00	12	891	1	0	0	1	0
RFA_00745	s2m links to Rfam database...	0.66	0.67	0.67	8	934	5	1	3	1	4
RFA_00749	s2m links to Rfam database...	0.66	0.67	0.67	8	891	5	1	3	1	4
RFA_00758	s2m links to Rfam database...	0.96	0.92	1.00	11	892	1	0	0	1	1
RFA_00762	s2m links to Rfam database...	0.64	0.67	0.62	8	890	6	1	4	1	4
RFA_00763	s2m links to Rfam database...	1.00	1.00	1.00	12	891	1	0	0	1	0
RFA_00764	s2m links to Rfam database...	0.66	0.67	0.67	8	891	5	1	3	1	4
RFA_00765	s2m links to Rfam database...	1.00	1.00	1.00	12	891	1	0	0	1	0
RFA_00767	Corona_pk3 links to Rfam database...	0.63	0.56	0.71	10	1877	5	0	4	1	8
RFA_00768	Corona_pk3 links to Rfam database...	0.48	0.44	0.53	8	1876	8	1	6	1	10
RFA_00769	Corona_pk3 links to Rfam database...	0.55	0.56	0.56	10	1935	10	3	5	2	8
RFA_00770	Corona_pk3 links to Rfam database...	0.68	0.56	0.83	10	2004	6	0	2	4	8
RFA_00773	Corona_pk3 links to Rfam database...	0.71	0.56	0.91	10	1942	5	1	0	4	8
RFA_00781	Gammaretro_CES links to Rfam database...	0.55	0.56	0.55	18	5017	17	2	13	2	14
RFA_00786	Gammaretro_CES links to Rfam database...	0.71	0.72	0.70	23	5017	12	2	8	2	9
RFA_00791	Gammaretro_CES links to Rfam database...	0.50	0.50	0.52	16	5120	16	3	12	1	16
RFA_00792	Gammaretro_CES links to Rfam database...	0.90	0.88	0.93	28	5020	3	0	2	1	4
RFA_00801	Gammaretro_CES links to Rfam database...	0.59	0.59	0.59	19	5018	14	0	13	1	13
RFA_00808	RydC links to Rfam database...	-0.01	0.00	0.00	0	2001	16	2	13	1	16
RFA_00809	RydC links to Rfam database...	0.36	0.38	0.35	6	2128	12	1	10	1	10
SPR_00030	-	0.47	0.43	0.53	9	2468	8	0	8	0	12
SPR_00032	tRNA links to Rfam database...	0.93	0.90	0.95	19	2536	4	0	1	3	2
SPR_00074	tRNA links to Rfam database...	0.50	0.50	0.50	10	2830	11	2	8	1	10
SPR_00079	tRNA links to Rfam database...	0.97	0.95	1.00	18	2467	3	0	0	3	1
SPR_00127	-	0.25	0.28	0.24	5	2394	18	1	15	2	13
SPR_00191	tRNA links to Rfam database...	0.18	0.19	0.18	4	2828	18	4	14	0	17
SPR_00220	tRNA links to Rfam database...	0.23	0.25	0.23	5	3719	21	4	13	4	15
SPR_00297	tRNA links to Rfam database...	0.23	0.24	0.24	5	2754	16	1	15	0	16
SPR_00298	tRNA links to Rfam database...	0.24	0.25	0.24	5	2754	16	0	16	0	15
SPR_00327	tRNA links to Rfam database...	0.37	0.38	0.36	8	2981	15	2	12	1	13
SPR_00331	tRNA links to Rfam database...	0.32	0.35	0.30	7	2752	16	5	11	0	13
SPR_00333	tRNA links to Rfam database...	-0.01	0.00	0.00	0	2753	22	6	16	0	21
SPR_00365	-	0.60	0.59	0.62	13	2535	9	1	7	1	9
SPR_00366	-	0.54	0.50	0.59	10	2539	7	1	6	0	10
SPR_00367	-	0.42	0.41	0.45	9	2465	11	0	11	0	13
SPR_00416	tRNA links to Rfam database...	-0.01	0.00	0.00	0	3547	27	2	21	4	21
SPR_00461	tRNA links to Rfam database...	0.47	0.47	0.47	9	2537	12	1	9	2	10
SPR_00504	tRNA links to Rfam database...	0.46	0.50	0.43	10	2827	14	5	8	1	10
SPR_00505	tRNA links to Rfam database...	0.97	0.95	1.00	19	2907	3	0	0	3	1
SPR_00506	tRNA links to Rfam database...	0.97	0.95	1.00	19	2907	1	0	0	1	1
SPR_00509	tRNA links to Rfam database...	0.97	0.95	1.00	19	2907	3	0	0	3	1
SPR_00512	tRNA links to Rfam database...	0.97	0.95	1.00	19	2907	3	0	0	3	1
SPR_00513	tRNA links to Rfam database...	0.97	0.95	1.00	19	2907	1	0	0	1	1
SPR_00517	tRNA links to Rfam database...	-0.01	0.00	0.00	0	2828	23	5	17	1	20
SPR_00518	tRNA links to Rfam database...	0.55	0.55	0.55	11	2906	10	1	8	1	9
SPR_00552	tRNA links to Rfam database...	0.27	0.26	0.28	5	2683	13	2	11	0	14
SPR_00557	tRNA links to Rfam database...	0.40	0.43	0.39	9	2827	15	1	13	1	12
SPR_00610	tRNA links to Rfam database...	0.77	0.71	0.83	15	2538	4	0	3	1	6
SPR_00632	tRNA links to Rfam database...	0.87	0.80	0.94	16	2539	1	0	1	0	4
SPR_00633	tRNA links to Rfam database...	0.27	0.30	0.25	6	2532	18	2	16	0	14
SPR_01051	tRNA links to Rfam database...	0.60	0.62	0.59	13	2534	9	1	8	0	8
SRP_00001	Bacteria_large_SRP links to Rfam database...	0.89	0.90	0.88	36	6745	5	1	4	0	4
SRP_00005	-	0.28	0.29	0.27	7	3979	21	4	15	2	17
SRP_00007	-	0.74	0.73	0.75	33	11891	15	1	10	4	12
SRP_00008	Bacteria_small_SRP links to Rfam database...	0.70	0.72	0.69	18	2900	9	0	8	1	7
SRP_00038	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	5019	31	2	29	0	33
SRP_00040	Bacteria_small_SRP links to Rfam database...	0.70	0.74	0.66	23	5530	14	1	11	2	8
SRP_00042	Bacteria_small_SRP links to Rfam database...	0.38	0.40	0.37	10	3978	19	1	16	2	15
SRP_00043	Bacteria_small_SRP links to Rfam database...	0.45	0.48	0.42	14	5017	23	4	15	4	15
SRP_00044	Bacteria_small_SRP links to Rfam database...	0.77	0.75	0.80	24	6075	10	1	5	4	8
SRP_00051	Bacteria_small_SRP links to Rfam database...	0.09	0.10	0.09	3	5428	29	1	28	0	27
SRP_00054	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	5531	34	3	31	0	32
SRP_00072	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6296	32	3	29	0	29
SRP_00074	Bacteria_small_SRP links to Rfam database...	0.39	0.41	0.38	12	6523	24	3	17	4	17
SRP_00075	Bacteria_small_SRP links to Rfam database...	0.82	0.79	0.84	27	5533	8	0	5	3	7
SRP_00077	Bacteria_small_SRP links to Rfam database...	0.15	0.16	0.15	6	6630	34	4	30	0	31
SRP_00081	Bacteria_small_SRP links to Rfam database...	0.68	0.74	0.62	23	5528	14	1	13	0	8
SRP_00084	Bacteria_small_SRP links to Rfam database...	0.81	0.82	0.80	28	5425	7	1	6	0	6
SRP_00093	-	0.33	0.40	0.27	10	14159	45	11	16	18	15
SRP_00094	Bacteria_small_SRP links to Rfam database...	0.86	0.88	0.84	21	4070	4	0	4	0	3
SRP_00095	Bacteria_small_SRP links to Rfam database...	0.81	0.84	0.78	21	3978	6	1	5	0	4
SRP_00098	Bacteria_small_SRP links to Rfam database...	0.66	0.68	0.66	25	6403	14	1	12	1	12
SRP_00105	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	5532	33	4	29	0	34
SRP_00106	Bacteria_large_SRP links to Rfam database...	0.67	0.76	0.59	19	5221	16	4	9	3	6
SRP_00107	Bacteria_small_SRP links to Rfam database...	0.13	0.16	0.12	3	3629	26	6	17	3	16
SRP_00119	-	0.85	0.84	0.86	43	12991	10	0	7	3	8
SRP_00128	Bacteria_small_SRP links to Rfam database...	0.77	0.81	0.74	29	6747	12	1	9	2	7
SRP_00135	-	0.81	0.82	0.79	42	14312	14	1	10	3	9
SRP_00139	-	-0.01	0.00	0.00	0	2128	17	4	13	0	12
SRP_00141	Bacteria_small_SRP links to Rfam database...	0.86	0.85	0.88	35	6288	5	1	4	0	6
SRP_00145	Bacteria_small_SRP links to Rfam database...	0.96	0.98	0.95	39	6287	3	1	1	1	1
SRP_00146	Bacteria_small_SRP links to Rfam database...	0.93	0.94	0.92	34	5216	3	1	2	0	2
SRP_00161	Bacteria_small_SRP links to Rfam database...	0.80	0.82	0.78	18	2827	5	0	5	0	4
SRP_00162	Bacteria_small_SRP links to Rfam database...	0.81	0.83	0.79	19	2902	6	0	5	1	4
SRP_00164	Bacteria_small_SRP links to Rfam database...	0.87	0.89	0.86	31	6867	6	1	4	1	4
SRP_00193	-	0.67	0.67	0.69	24	6868	12	1	10	1	12
SRP_00200	Bacteria_small_SRP links to Rfam database...	0.44	0.44	0.43	16	6866	21	2	19	0	20
SRP_00209	Bacteria_small_SRP links to Rfam database...	0.73	0.74	0.71	20	4628	8	0	8	0	7
SRP_00214	-	0.90	0.92	0.88	22	3056	4	0	3	1	2
SRP_00216	Bacteria_small_SRP links to Rfam database...	0.93	0.93	0.93	25	3376	3	1	1	1	2
SRP_00221	-	0.68	0.71	0.65	15	3380	9	1	7	1	6
SRP_00222	Bacteria_small_SRP links to Rfam database...	0.94	0.96	0.92	24	3055	3	1	1	1	1
SRP_00227	Bacteria_small_SRP links to Rfam database...	0.89	0.90	0.88	28	5119	4	1	3	0	3
SRP_00231	Bacteria_small_SRP links to Rfam database...	0.46	0.47	0.46	16	5425	19	1	18	0	18
SRP_00233	Bacteria_small_SRP links to Rfam database...	0.91	0.88	0.94	29	5120	2	0	2	0	4
SRP_00243	Bacteria_small_SRP links to Rfam database...	0.90	0.87	0.93	27	5122	3	0	2	1	4
SRP_00250	Bacteria_small_SRP links to Rfam database...	0.74	0.75	0.73	27	6749	13	1	9	3	9
SRP_00251	Bacteria_small_SRP links to Rfam database...	0.70	0.72	0.68	26	6983	12	1	11	0	10
SRP_00271	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	3215	25	3	22	0	24
SRP_00273	Bacteria_small_SRP links to Rfam database...	0.86	0.88	0.85	35	6745	8	1	5	2	5
SRP_00274	Bacteria_small_SRP links to Rfam database...	0.91	0.92	0.90	35	6864	5	1	3	1	3
SRP_00295	Bacteria_small_SRP links to Rfam database...	0.88	0.87	0.89	33	6866	6	1	3	2	5
SRP_00303	Bacteria_small_SRP links to Rfam database...	0.60	0.63	0.59	20	6636	14	1	13	0	12
SRP_00307	-	0.50	0.53	0.47	23	12831	26	10	16	0	20
SRP_00310	Bacteria_small_SRP links to Rfam database...	0.81	0.83	0.79	19	2902	6	0	5	1	4
SRP_00312	Bacteria_small_SRP links to Rfam database...	0.29	0.30	0.29	8	4158	20	4	16	0	19
SRP_00315	Bacteria_small_SRP links to Rfam database...	0.78	0.78	0.78	18	2903	5	0	5	0	5
SRP_00318	Bacteria_small_SRP links to Rfam database...	0.78	0.78	0.78	18	2980	5	0	5	0	5
SRP_00324	Bacteria_small_SRP links to Rfam database...	0.58	0.62	0.55	18	5323	15	4	11	0	11
SRP_00325	Bacteria_small_SRP links to Rfam database...	1.00	1.00	1.00	33	4338	0	0	0	0	0
SRP_00338	Bacteria_small_SRP links to Rfam database...	0.92	0.92	0.92	33	5424	4	0	3	1	3
SRP_00342	Bacteria_small_SRP links to Rfam database...	0.57	0.60	0.56	15	3978	17	1	11	5	10
SRP_00350	Bacteria_small_SRP links to Rfam database...	0.26	0.26	0.27	7	3890	19	2	17	0	20
SRP_00356	Bacteria_small_SRP links to Rfam database...	0.65	0.67	0.65	20	5019	14	2	9	3	10
SRP_00357	Bacteria_small_SRP links to Rfam database...	0.93	0.92	0.94	33	5321	3	1	1	1	3
SRP_00365	Bacteria_small_SRP links to Rfam database...	0.75	0.74	0.77	20	3377	6	0	6	0	7
SRP_00367	Bacteria_small_SRP links to Rfam database...	0.83	0.86	0.81	30	6749	7	2	5	0	5
SRP_00369	Bacteria_small_SRP links to Rfam database...	0.93	0.91	0.94	32	5744	2	1	1	0	3
SRP_00383	Bacteria_small_SRP links to Rfam database...	0.12	0.13	0.13	3	3216	21	3	18	0	21

^top

Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.

Table of contents:

Overview

Performance plots

Performance of Contrafold - scored higher in this pairwise comparison

1. Total counts & total scores for Contrafold

2. Individual counts for Contrafold [ download as .csv ]

Performance of Afold - scored lower in this pairwise comparison

1. Total counts & total scores for Afold

2. Individual counts for Afold [ download as .csv ]