CompaRNA - on-line benchmarks of RNA structure prediction methods

Laboratory of Structural Bioinformatics @ Adam Mickiewicz University in Poznan

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Overview

Metric	Cylofold		Alterna
MCC	0.621	>	0.555
Average MCC ± 95% Confidence Intervals	0.627 ± 0.026	>	0.579 ± 0.025
Sensitivity	0.599	>	0.549
Positive Predictive Value	0.650	>	0.569
Total TP	7143	>	6548
Total TN	1294610	>	1294087
Total FP	4292	<	5644
Total FP CONTRA	809	<	829
Total FP INCONS	3035	<	4133
Total FP COMP	448	<	682
Total FN	4785	<	5380
P-value	3.56938820447e-08

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Performance plots

Comparison of performance of Cylofold and Alterna. Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data (individual counts for Cylofold and Alterna).
Average Matthews Correlation Coefficients (MCC) with 95% confidence intervals (CIs) were plotted for different RNA families, for which at least 3 members were present in the benchmarking dataset. 'n' denotes the number of MCCs used to calculate the average and CI. See tables below for raw data (individual counts for Cylofold and Alterna).
Comparison of average Matthews Correlation Coefficients (MCCs) for Cylofold and Alterna. The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data (individual counts for Cylofold and Alterna).

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Performance of Cylofold - scored higher in this pairwise comparison

1. Total counts & total scores for Cylofold

Total Base Pair Counts
Total TP	7143
Total TN	1294610
Total FP	4292
Total FP CONTRA	809
Total FP INCONS	3035
Total FP COMP	448
Total FN	4785

Total Scores
MCC	0.621
Average MCC ± 95% Confidence Intervals	0.627 ± 0.026
Sensitivity	0.599
Positive Predictive Value	0.650
Nr of predictions	673

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2. Individual counts for Cylofold [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
NDB_00014	-	0.89	0.80	1.00	8	182	0	0	0	0	2
NDB_00015	-	0.38	0.40	0.40	4	266	6	0	6	0	6
NDB_00016	-	0.91	0.83	1.00	10	266	0	0	0	0	2
NDB_00047	-	0.91	0.83	1.00	10	266	0	0	0	0	2
NDB_00048	-	-0.02	0.00	0.00	0	1514	26	0	26	0	28
NDB_00049	-	0.92	0.85	1.00	11	314	0	0	0	0	2
NDB_00051	tRNA links to Rfam database...	0.76	0.71	0.81	17	2754	4	4	0	0	7
PDB_00001	-	-0.03	0.00	0.00	0	270	6	0	6	0	12
PDB_00002	-	0.71	0.63	0.83	5	204	1	0	1	0	3
PDB_00003	-	0.81	0.67	1.00	8	343	0	0	0	0	4
PDB_00004	-	0.79	0.63	1.00	12	808	0	0	0	0	7
PDB_00005	Tymo_tRNA-like links to Rfam database...	0.78	0.79	0.79	11	932	3	0	3	0	3
PDB_00006	-	1.00	1.00	1.00	14	689	0	0	0	0	0
PDB_00011	-	0.91	0.83	1.00	10	266	0	0	0	0	2
PDB_00012	mir-TAR links to Rfam database...	1.00	1.00	1.00	7	399	3	0	0	3	0
PDB_00013	-	1.00	1.00	1.00	10	396	1	0	0	1	0
PDB_00017	-	0.77	0.60	1.00	9	694	0	0	0	0	6
PDB_00018	-	0.90	0.90	0.90	18	1015	2	2	0	0	2
PDB_00019	-	0.74	0.75	0.75	6	245	2	0	2	0	2
PDB_00020	-	0.79	0.75	0.83	15	762	3	0	3	0	5
PDB_00021	-	1.00	1.00	1.00	8	182	0	0	0	0	0
PDB_00022	-	0.74	0.56	1.00	5	248	0	0	0	0	4
PDB_00032	-	0.77	0.60	1.00	9	894	1	0	0	1	6
PDB_00034	-	0.57	0.33	1.00	4	374	0	0	0	0	8
PDB_00035	-	0.81	0.67	1.00	6	204	0	0	0	0	3
PDB_00036	-	-0.01	0.00	0.00	0	3464	22	1	21	0	27
PDB_00040	-	0.83	0.70	1.00	7	269	0	0	0	0	3
PDB_00041	-	1.00	1.00	1.00	12	618	0	0	0	0	0
PDB_00043	-	0.66	0.62	0.73	8	424	3	0	3	0	5
PDB_00048	-	1.00	1.00	1.00	9	291	1	0	0	1	0
PDB_00049	-	0.83	0.70	1.00	7	224	0	0	0	0	3
PDB_00053	-	1.00	1.00	1.00	11	424	0	0	0	0	0
PDB_00054	-	-0.04	0.00	0.00	0	184	6	0	6	0	10
PDB_00056	-	0.93	0.88	1.00	14	616	0	0	0	0	2
PDB_00057	-	1.00	1.00	1.00	10	341	1	0	0	1	0
PDB_00065	-	0.77	0.60	1.00	6	400	1	0	0	1	4
PDB_00070	tRNA links to Rfam database...	0.59	0.58	0.61	14	2827	9	1	8	0	10
PDB_00074	-	-0.03	0.00	0.00	0	370	8	0	8	0	12
PDB_00081	-	0.94	0.89	1.00	8	182	0	0	0	0	1
PDB_00088	-	0.86	0.75	1.00	9	426	1	0	0	1	3
PDB_00096	-	-0.03	0.00	0.00	0	319	6	0	6	0	12
PDB_00098	-	0.81	0.67	1.00	4	227	0	0	0	0	2
PDB_00102	-	0.93	0.88	1.00	7	224	0	0	0	0	1
PDB_00104	-	0.36	0.38	0.38	6	614	10	0	10	0	10
PDB_00107	-	0.95	0.91	1.00	10	455	1	0	0	1	1
PDB_00108	-	0.84	0.71	1.00	5	205	0	0	0	0	2
PDB_00113	-	0.94	0.89	1.00	8	223	0	0	0	0	1
PDB_00115	-	0.50	0.50	0.53	8	546	7	0	7	0	8
PDB_00116	-	0.70	0.50	1.00	3	228	0	0	0	0	3
PDB_00119	-	0.95	0.90	1.00	9	244	0	0	0	0	1
PDB_00120	-	0.95	0.90	1.00	9	222	0	0	0	0	1
PDB_00121	-	0.95	0.90	1.00	9	222	0	0	0	0	1
PDB_00122	-	0.91	0.83	1.00	10	290	0	0	0	0	2
PDB_00123	-	0.94	0.94	0.94	34	4150	2	2	0	0	2
PDB_00124	-	0.86	0.90	0.82	9	485	2	2	0	0	1
PDB_00125	-	-0.03	0.00	0.00	0	225	6	0	6	0	10
PDB_00128	-	0.78	0.79	0.79	11	482	3	0	3	0	3
PDB_00130	-	1.00	1.00	1.00	6	270	0	0	0	0	0
PDB_00132	-	0.63	0.58	0.70	7	425	3	0	3	0	5
PDB_00134	-	0.94	1.00	0.89	8	369	1	1	0	0	0
PDB_00136	-	0.85	0.77	0.95	20	2394	1	0	1	0	6
PDB_00137	-	0.87	0.77	1.00	10	396	0	0	0	0	3
PDB_00138	-	0.94	1.00	0.89	8	369	1	1	0	0	0
PDB_00142	-	0.91	0.83	1.00	10	425	0	0	0	0	2
PDB_00149	-	0.89	0.80	1.00	12	691	0	0	0	0	3
PDB_00150	-	0.95	0.90	1.00	9	291	1	0	0	1	1
PDB_00152	-	0.93	0.88	1.00	7	183	0	0	0	0	1
PDB_00153	-	0.84	0.80	0.89	8	244	1	0	1	0	2
PDB_00155	-	0.86	0.75	1.00	6	319	0	0	0	0	2
PDB_00157	-	0.52	0.45	0.62	13	3300	13	0	8	5	16
PDB_00158	-	0.77	0.60	1.00	12	849	0	0	0	0	8
PDB_00159	-	0.67	0.45	1.00	5	346	0	0	0	0	6
PDB_00160	-	0.94	0.89	1.00	8	268	0	0	0	0	1
PDB_00168	-	0.81	0.67	1.00	4	296	1	0	0	1	2
PDB_00169	-	0.83	0.70	1.00	7	224	0	0	0	0	3
PDB_00170	-	0.93	0.88	1.00	14	616	0	0	0	0	2
PDB_00171	-	0.70	0.50	1.00	6	429	0	0	0	0	6
PDB_00174	-	0.27	0.27	0.30	6	1015	14	0	14	0	16
PDB_00175	-	-0.01	0.00	0.00	0	4534	26	0	26	0	36
PDB_00178	-	0.79	0.64	1.00	7	521	0	0	0	0	4
PDB_00182	-	0.88	0.78	1.00	7	246	0	0	0	0	2
PDB_00183	-	0.21	0.17	0.27	4	1470	11	0	11	0	19
PDB_00184	-	0.87	0.77	1.00	10	551	0	0	0	0	3
PDB_00185	-	0.34	0.32	0.38	9	2902	16	0	15	1	19
PDB_00190	-	0.95	0.90	1.00	9	222	0	0	0	0	1
PDB_00192	-	0.21	0.14	0.33	5	3225	10	0	10	0	31
PDB_00196	-	0.28	0.29	0.31	8	1570	18	0	18	0	20
PDB_00197	-	1.00	1.00	1.00	7	293	0	0	0	0	0
PDB_00200	-	0.81	0.67	1.00	6	204	0	0	0	0	3
PDB_00201	-	0.77	0.60	1.00	6	319	0	0	0	0	4
PDB_00202	-	0.96	0.93	1.00	13	548	1	0	0	1	1
PDB_00203	-	0.96	0.92	1.00	12	549	0	0	0	0	1
PDB_00205	-	0.84	0.71	1.00	10	425	0	0	0	0	4
PDB_00206	-	0.86	0.75	1.00	6	270	0	0	0	0	2
PDB_00207	-	0.92	0.86	1.00	12	366	0	0	0	0	2
PDB_00209	-	0.96	1.00	0.92	11	549	1	1	0	0	0
PDB_00211	-	0.89	0.80	1.00	8	182	0	0	0	0	2
PDB_00214	-	0.73	0.55	1.00	6	400	0	0	0	0	5
PDB_00215	-	-0.02	0.00	0.00	0	1106	22	0	22	0	24
PDB_00219	-	1.00	1.00	1.00	7	203	0	0	0	0	0
PDB_00221	-	0.88	0.78	1.00	7	246	0	0	0	0	2
PDB_00224	-	0.93	0.88	1.00	7	183	0	0	0	0	1
PDB_00229	tRNA links to Rfam database...	0.96	0.91	1.00	21	2754	0	0	0	0	2
PDB_00234	-	-0.04	0.00	0.00	0	268	8	0	8	0	12
PDB_00236	-	0.45	0.42	0.50	10	1108	10	0	10	0	14
PDB_00237	-	0.88	0.78	1.00	7	371	1	0	0	1	2
PDB_00239	-	0.29	0.22	0.40	4	810	6	0	6	0	14
PDB_00243	-	1.00	1.00	1.00	12	618	0	0	0	0	0
PDB_00248	-	0.91	0.83	1.00	10	266	0	0	0	0	2
PDB_00249	-	0.00	0.00	0.00	0	276	0	0	0	0	11
PDB_00250	-	0.76	0.68	0.85	17	1750	3	2	1	0	8
PDB_00252	-	0.97	0.93	1.00	14	766	2	0	0	2	1
PDB_00254	-	-0.04	0.00	0.00	0	266	10	0	10	0	12
PDB_00256	-	0.49	0.75	0.33	3	316	7	6	0	1	1
PDB_00257	-	0.79	0.64	1.00	7	344	0	0	0	0	4
PDB_00258	-	1.00	1.00	1.00	8	245	0	0	0	0	0
PDB_00261	-	-0.03	0.00	0.00	0	486	10	0	10	0	16
PDB_00262	-	0.25	0.25	0.27	6	1106	16	0	16	0	18
PDB_00264	-	-0.01	0.00	0.00	0	1114	14	0	14	0	18
PDB_00267	-	-0.03	0.00	0.00	0	366	12	0	12	0	14
PDB_00286	-	-0.03	0.00	0.00	0	184	8	0	6	2	6
PDB_00293	-	0.20	0.25	0.18	3	1111	14	8	6	0	9
PDB_00312	-	1.00	1.00	1.00	9	426	0	0	0	0	0
PDB_00313	tRNA links to Rfam database...	0.82	0.84	0.80	16	2681	6	2	2	2	3
PDB_00317	-	1.00	1.00	1.00	10	368	0	0	0	0	0
PDB_00326	-	0.80	0.64	1.00	18	3723	0	0	0	0	10
PDB_00327	tRNA links to Rfam database...	0.57	0.52	0.63	12	3062	7	0	7	0	11
PDB_00339	-	0.75	0.56	1.00	9	657	0	0	0	0	7
PDB_00341	-	0.38	0.31	0.50	5	693	5	0	5	0	11
PDB_00342	-	-0.02	0.00	0.00	0	762	18	0	18	0	10
PDB_00343	-	0.82	0.71	0.94	15	1580	2	0	1	1	6
PDB_00347	-	0.80	0.65	1.00	13	1163	0	0	0	0	7
PDB_00349	-	0.24	0.29	0.22	4	928	14	4	10	0	10
PDB_00351	-	0.54	0.50	0.60	6	551	4	0	4	0	6
PDB_00352	-	0.90	0.95	0.86	18	1204	3	2	1	0	1
PDB_00357	-	0.73	0.80	0.67	8	768	4	4	0	0	2
PDB_00362	tRNA links to Rfam database...	0.98	0.95	1.00	21	2829	0	0	0	0	1
PDB_00365	-	0.96	0.93	1.00	13	422	0	0	0	0	1
PDB_00371	-	0.81	0.67	1.00	10	551	0	0	0	0	5
PDB_00377	-	0.91	0.92	0.92	11	516	1	0	1	0	1
PDB_00378	-	0.88	0.79	1.00	11	692	0	0	0	0	3
PDB_00392	tRNA links to Rfam database...	0.51	0.48	0.56	10	2832	8	2	6	0	11
PDB_00400	-	-0.01	0.00	0.00	0	3141	19	0	19	0	34
PDB_00402	tRNA links to Rfam database...	0.96	0.91	1.00	21	2754	0	0	0	0	2
PDB_00411	-	0.81	0.67	1.00	10	585	0	0	0	0	5
PDB_00420	-	0.63	0.60	0.67	6	487	6	0	3	3	4
PDB_00425	tRNA links to Rfam database...	0.78	0.73	0.84	16	2682	3	0	3	0	6
PDB_00430	tRNA links to Rfam database...	0.73	0.72	0.75	18	3216	6	3	3	0	7
PDB_00431	tRNA links to Rfam database...	0.88	0.95	0.83	19	2188	5	4	0	1	1
PDB_00454	-	0.84	0.81	0.87	26	2671	4	0	4	0	6
PDB_00474	tRNA links to Rfam database...	0.96	0.91	1.00	21	2680	0	0	0	0	2
PDB_00481	-	0.64	0.54	0.78	14	1873	4	0	4	0	12
PDB_00513	-	1.00	1.00	1.00	7	224	0	0	0	0	0
PDB_00522	-	0.82	0.72	0.93	13	1114	1	0	1	0	5
PDB_00526	-	-0.01	0.00	0.00	0	296	4	1	3	0	3
PDB_00527	-	-0.01	0.00	0.00	0	296	4	1	3	0	5
PDB_00537	-	0.66	0.44	1.00	4	402	0	0	0	0	5
PDB_00553	mir-TAR links to Rfam database...	1.00	1.00	1.00	11	454	0	0	0	0	0
PDB_00570	-	0.28	0.23	0.36	5	2264	9	1	8	0	17
PDB_00571	tRNA links to Rfam database...	0.87	0.80	0.95	20	3300	1	1	0	0	5
PDB_00584	-	0.84	0.71	1.00	12	1473	0	0	0	0	5
PDB_00599	-	0.96	0.93	1.00	13	548	0	0	0	0	1
PDB_00603	-	0.95	0.90	1.00	9	244	0	0	0	0	1
PDB_00611	-	-0.01	0.00	0.00	0	772	8	1	7	0	11
PDB_00617	-	0.95	0.90	1.00	9	267	0	0	0	0	1
PDB_00627	-	0.63	0.53	0.75	9	1641	5	0	3	2	8
PDB_00629	-	0.39	0.35	0.44	8	1635	10	0	10	0	15
PDB_00637	-	0.88	0.90	0.86	19	2324	3	2	1	0	2
PDB_00648	-	0.92	0.92	0.92	12	848	1	0	1	0	1
PDB_00667	tRNA links to Rfam database...	0.80	0.82	0.78	18	2827	6	4	1	1	4
PDB_00681	-	-0.01	0.00	0.00	0	1256	19	0	19	0	19
PDB_00682	-	-0.03	0.00	0.00	0	482	14	0	14	0	16
PDB_00686	-	0.94	0.89	1.00	17	686	0	0	0	0	2
PDB_00692	-	-0.01	0.00	0.00	0	1216	9	0	9	0	20
PDB_00693	-	0.94	0.88	1.00	15	1161	0	0	0	0	2
PDB_00698	-	0.94	0.89	1.00	17	844	0	0	0	0	2
PDB_00702	-	0.78	0.67	0.92	24	4345	4	0	2	2	12
PDB_00705	-	0.86	0.75	1.00	6	247	0	0	0	0	2
PDB_00709	-	0.18	0.19	0.20	3	765	12	0	12	0	13
PDB_00710	-	0.00	0.00	0.00	0	780	0	0	0	0	16
PDB_00713	-	0.24	0.24	0.26	5	1997	14	0	14	0	16
PDB_00716	HDV_ribozyme links to Rfam database...	0.68	0.70	0.67	16	2677	9	0	8	1	7
PDB_00724	-	0.52	0.48	0.58	14	2121	10	0	10	0	15
PDB_00725	-	0.89	0.80	1.00	12	583	0	0	0	0	3
PDB_00726	-	0.88	0.78	1.00	7	344	1	0	0	1	2
PDB_00727	-	1.00	1.00	1.00	7	554	3	0	0	3	0
PDB_00728	-	0.97	0.93	1.00	14	482	0	0	0	0	1
PDB_00732	-	0.30	0.30	0.32	9	2975	20	0	19	1	21
PDB_00733	-	0.22	0.23	0.23	7	2895	25	1	23	1	23
PDB_00734	-	0.83	0.70	1.00	7	224	0	0	0	0	3
PDB_00740	-	0.59	0.36	1.00	4	227	0	0	0	0	7
PDB_00741	Entero_5_CRE links to Rfam database...	0.87	0.76	1.00	13	690	0	0	0	0	4
PDB_00746	-	0.89	0.84	0.94	32	4719	4	0	2	2	6
PDB_00751	-	0.73	0.54	1.00	7	588	2	0	0	2	6
PDB_00754	-	0.89	1.00	0.80	12	1470	6	3	0	3	0
PDB_00767	-	0.91	1.00	0.83	20	2187	8	4	0	4	0
PDB_00800	-	0.30	0.31	0.30	9	2050	21	1	20	0	20
PDB_00806	-	0.39	0.32	0.50	8	1814	8	0	8	0	17
PDB_00807	-	0.69	0.48	1.00	11	1880	1	0	0	1	12
PDB_00809	-	-0.02	0.00	0.00	0	487	9	0	9	0	14
PDB_00810	s2m links to Rfam database...	0.51	0.41	0.64	7	1070	4	2	2	0	10
PDB_00815	-	0.58	0.56	0.63	5	622	4	0	3	1	4
PDB_00823	-	-0.04	0.00	0.00	0	183	7	0	7	0	9
PDB_00828	Purine links to Rfam database...	0.88	0.78	1.00	21	2464	0	0	0	0	6
PDB_00829	Purine links to Rfam database...	0.43	0.42	0.45	10	2256	12	0	12	0	14
PDB_00842	-	1.00	1.00	1.00	8	370	0	0	0	0	0
PDB_00851	-	0.45	0.39	0.53	16	4723	14	0	14	0	25
PDB_00855	-	0.71	0.60	0.86	6	458	2	0	1	1	4
PDB_00857	-	1.00	1.00	1.00	15	1066	0	0	0	0	0
PDB_00863	-	0.50	0.44	0.57	8	976	6	0	6	0	10
PDB_00865	-	0.96	0.92	1.00	11	340	0	0	0	0	1
PDB_00868	-	1.00	1.00	1.00	14	1312	0	0	0	0	0
PDB_00870	-	-0.01	0.00	0.00	0	1113	15	0	15	0	16
PDB_00871	-	-0.02	0.00	0.00	0	1106	22	0	22	0	24
PDB_00874	-	0.21	0.20	0.25	4	930	12	0	12	0	16
PDB_00876	HIV_FE links to Rfam database...	0.97	0.95	1.00	19	971	0	0	0	0	1
PDB_00878	-	0.96	0.92	1.00	11	485	0	0	0	0	1
PDB_00883	-	1.00	1.00	1.00	12	618	0	0	0	0	0
PDB_00885	-	0.97	0.94	1.00	17	803	0	0	0	0	1
PDB_00886	-	0.34	0.35	0.35	14	4146	26	0	26	0	26
PDB_00890	-	0.71	0.71	0.71	10	689	4	2	2	0	4
PDB_00891	-	0.80	0.93	0.70	14	926	6	6	0	0	1
PDB_00892	-	0.00	0.00	0.00	0	2556	0	0	0	0	15
PDB_00918	-	0.93	1.00	0.88	7	317	1	1	0	0	0
PDB_00923	-	1.00	1.00	1.00	6	184	0	0	0	0	0
PDB_00924	-	0.97	0.94	1.00	34	3621	0	0	0	0	2
PDB_00925	-	0.95	0.91	1.00	10	341	1	0	0	1	1
PDB_00928	-	0.79	0.63	1.00	5	295	0	0	0	0	3
PDB_00929	-	-0.02	0.00	0.00	0	762	18	0	18	0	20
PDB_00932	-	0.88	0.77	1.00	10	810	0	0	0	0	3
PDB_00937	-	0.94	0.89	1.00	16	614	0	0	0	0	2
PDB_00943	-	-0.01	0.00	0.00	0	1425	8	0	6	2	15
PDB_00945	-	0.95	0.90	1.00	9	456	0	0	0	0	1
PDB_00960	-	-0.03	0.00	0.00	0	394	12	2	10	0	10
PDB_00961	-	1.00	1.00	1.00	10	1760	4	0	0	4	0
PDB_00964	-	0.88	0.78	1.00	7	623	2	0	0	2	2
PDB_00966	-	-0.03	0.00	0.00	0	244	9	2	7	0	7
PDB_00973	-	0.00	0.00	0.00	0	351	0	0	0	0	8
PDB_00974	-	0.00	0.00	0.00	0	378	0	0	0	0	9
PDB_00986	-	0.88	0.79	1.00	11	424	0	0	0	0	3
PDB_00987	-	0.38	0.38	0.43	6	547	8	0	8	0	10
PDB_00989	-	0.17	0.17	0.19	6	2972	25	0	25	0	30
PDB_01001	tRNA links to Rfam database...	0.83	0.83	0.83	15	2127	3	3	0	0	3
PDB_01002	tRNA links to Rfam database...	0.88	0.90	0.86	19	2753	5	3	0	2	2
PDB_01008	-	1.00	1.00	1.00	12	583	0	0	0	0	0
PDB_01009	tRNA links to Rfam database...	0.90	0.90	0.90	19	2464	5	0	2	3	2
PDB_01017	-	-0.03	0.00	0.00	0	422	13	0	13	0	14
PDB_01019	-	-0.03	0.00	0.00	0	422	13	0	13	0	14
PDB_01020	Purine links to Rfam database...	0.86	0.74	1.00	17	2261	1	0	0	1	6
PDB_01025	-	1.00	1.00	1.00	9	244	0	0	0	0	0
PDB_01035	-	0.96	0.92	1.00	24	1516	0	0	0	0	2
PDB_01040	-	1.00	1.00	1.00	20	1108	0	0	0	0	0
PDB_01044	-	1.00	1.00	1.00	16	930	3	0	0	3	0
PDB_01045	-	0.98	0.96	1.00	22	1203	1	0	0	1	1
PDB_01050	UnaL2 links to Rfam database...	0.92	0.85	1.00	11	619	2	0	0	2	2
PDB_01051	Telomerase-cil links to Rfam database...	0.79	0.69	0.90	9	893	2	0	1	1	4
PDB_01053	tRNA links to Rfam database...	1.00	1.00	1.00	16	1362	0	0	0	0	0
PDB_01056	-	0.74	0.56	1.00	5	248	0	0	0	0	4
PDB_01057	-	1.00	1.00	1.00	8	202	0	0	0	0	0
PDB_01059	-	0.88	1.00	0.78	7	222	2	2	0	0	0
PDB_01062	-	0.42	0.38	0.50	6	934	6	0	6	0	10
PDB_01065	-	-0.03	0.00	0.00	0	225	6	0	6	0	10
PDB_01071	-	0.78	0.62	1.00	8	398	0	0	0	0	5
PDB_01073	SAM links to Rfam database...	0.75	0.65	0.88	22	4346	4	2	1	1	12
PDB_01074	-	0.61	0.60	0.63	15	2751	10	2	7	1	10
PDB_01075	-	0.20	0.19	0.23	6	2389	20	0	20	0	26
PDB_01084	-	1.00	1.00	1.00	7	224	0	0	0	0	0
PDB_01097	-	0.93	0.88	1.00	7	203	0	0	0	0	1
PDB_01099	-	0.85	0.73	1.00	8	268	0	0	0	0	3
PDB_01100	-	-0.01	0.00	0.00	0	1467	18	0	18	0	22
PDB_01108	-	1.00	1.00	1.00	9	222	0	0	0	0	0
PDB_01114	TPP links to Rfam database...	0.38	0.33	0.45	9	2830	11	0	11	0	18
PDB_01117	-	-0.02	0.00	0.00	0	769	11	0	11	0	17
PDB_01118	-	0.92	0.84	1.00	16	1580	1	0	0	1	3
PDB_01119	-	0.80	0.86	0.75	12	614	4	2	2	0	2
PDB_01126	-	0.48	0.50	0.47	14	3051	18	2	14	2	14
PDB_01127	-	-0.01	0.00	0.00	0	976	16	0	14	2	14
PDB_01128	-	0.49	0.48	0.50	13	2749	13	3	10	0	14
PDB_01130	-	0.23	0.20	0.29	4	1756	10	2	8	0	16
PDB_01133	-	1.00	1.00	1.00	10	341	0	0	0	0	0
PDB_01135	-	-0.02	0.00	0.00	0	397	9	2	7	0	9
PDB_01137	-	-0.02	0.00	0.00	0	321	4	0	4	0	8
PDB_01138	-	-0.02	0.00	0.00	0	316	9	0	9	0	7
PDB_01145	-	1.00	1.00	1.00	14	766	2	0	0	2	0
PDB_01150	-	0.93	0.88	1.00	7	224	0	0	0	0	1
PDB_01152	HIV_FS2 links to Rfam database...	0.88	0.79	1.00	11	550	0	0	0	0	3
PDB_01154	-	0.90	0.82	1.00	9	397	0	0	0	0	2
PDB_01156	-	0.39	0.34	0.46	12	3802	14	0	14	0	23
PDB_01160	-	0.68	0.65	0.72	13	2062	5	1	4	0	7
PDB_01162	-	0.55	0.56	0.56	5	1531	7	0	4	3	4
PDB_01164	-	0.96	0.92	1.00	24	1516	0	0	0	0	2
PDB_01167	-	0.70	0.50	1.00	4	186	0	0	0	0	4
PDB_01168	-	0.86	0.75	1.00	6	184	0	0	0	0	2
PDB_01178	-	0.84	0.71	1.00	10	518	0	0	0	0	4
PDB_01194	-	0.97	0.93	1.00	14	482	0	0	0	0	1
PDB_01199	-	-0.01	0.00	0.00	0	2130	15	2	13	0	24
PDB_01201	-	0.95	0.91	1.00	20	1108	0	0	0	0	2
PDB_01203	-	0.74	0.68	0.81	13	1160	3	2	1	0	6
PDB_01205	-	-0.02	0.00	0.00	0	1015	20	4	16	0	18
PDB_01208	-	0.80	0.65	1.00	13	1163	0	0	0	0	7
PDB_01209	-	0.80	0.65	1.00	13	1163	0	0	0	0	7
PDB_01216	-	0.80	0.65	1.00	13	1163	0	0	0	0	7
PDB_01219	-	0.22	0.20	0.27	4	931	11	0	11	0	16
PDB_01237	-	1.00	1.00	1.00	8	268	0	0	0	0	0
PDB_01251	-	-0.03	0.00	0.00	0	317	8	0	8	0	13
PDB_01260	-	0.41	0.36	0.47	9	1811	10	0	10	0	16
PDB_01262	-	-0.03	0.00	0.00	0	185	5	0	5	0	8
PDB_01281	-	-0.03	0.00	0.00	0	366	12	0	12	0	14
PDB_01299	-	0.90	0.87	0.93	13	889	1	1	0	0	2
PDB_01313	-	-0.03	0.00	0.00	0	270	6	4	2	0	8
PDB_01325	-	0.91	0.83	1.00	10	266	0	0	0	0	2
PDB_01332	-	0.88	0.78	1.00	7	344	0	0	0	0	2
PDB_01337	-	0.33	0.27	0.43	3	554	4	2	2	0	8
PDB_01338	-	-0.02	0.00	0.00	0	272	4	0	4	0	8
PDB_01340	-	1.00	1.00	1.00	8	292	0	0	0	0	0
RFA_00389	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00390	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00391	Hammerhead_3 links to Rfam database...	0.93	0.87	1.00	13	1418	2	0	0	2	2
RFA_00396	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	2	0	0	2	1
RFA_00402	Hammerhead_3 links to Rfam database...	0.40	0.33	0.50	5	1421	5	0	5	0	10
RFA_00409	Hammerhead_3 links to Rfam database...	0.77	0.60	1.00	9	1422	1	0	0	1	6
RFA_00416	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1470	3	0	0	3	0
RFA_00420	-	1.00	1.00	1.00	15	3306	11	0	0	11	0
RFA_00425	Hammerhead_3 links to Rfam database...	0.93	0.87	1.00	13	1640	4	0	0	4	2
RFA_00427	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1471	2	0	0	2	1
RFA_00429	-	1.00	1.00	1.00	9	771	2	0	0	2	0
RFA_00433	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00434	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00436	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00440	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1470	2	0	0	2	0
RFA_00442	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00444	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1525	1	0	0	1	0
RFA_00446	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1471	2	0	0	2	1
RFA_00449	Hammerhead_3 links to Rfam database...	0.67	0.60	0.75	9	1473	5	0	3	2	6
RFA_00583	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4935	6	0	0	6	0
RFA_00584	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	2911	8	0	0	8	0
RFA_00585	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4836	11	0	0	11	0
RFA_00586	Y_RNA links to Rfam database...	0.71	0.80	0.63	12	3897	8	4	3	1	3
RFA_00587	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4836	8	0	0	8	0
RFA_00588	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4545	7	0	0	7	0
RFA_00589	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4356	11	0	0	11	0
RFA_00594	Y_RNA links to Rfam database...	0.93	0.87	1.00	13	2762	5	0	0	5	2
RFA_00632	HDV_ribozyme links to Rfam database...	0.54	0.54	0.56	15	4068	12	2	10	0	13
RFA_00636	HDV_ribozyme links to Rfam database...	0.78	0.82	0.74	23	3974	8	7	1	0	5
RFA_00642	Vimentin3 links to Rfam database...	0.18	0.17	0.21	3	2912	11	1	10	0	15
RFA_00643	Vimentin3 links to Rfam database...	0.23	0.22	0.25	4	2195	12	1	11	0	14
RFA_00644	Vimentin3 links to Rfam database...	-0.01	0.00	0.00	0	2684	17	3	14	0	18
RFA_00645	Vimentin3 links to Rfam database...	-0.01	0.00	0.00	0	2397	18	4	14	0	18
RFA_00649	Vimentin3 links to Rfam database...	-0.01	0.00	0.00	0	2137	8	0	8	0	18
RFA_00651	Vimentin3 links to Rfam database...	0.30	0.28	0.33	5	2065	10	5	5	0	13
RFA_00653	Vimentin3 links to Rfam database...	-0.01	0.00	0.00	0	2130	15	3	12	0	18
RFA_00654	Vimentin3 links to Rfam database...	0.26	0.22	0.31	4	2402	10	1	8	1	14
RFA_00658	Hammerhead_1 links to Rfam database...	0.40	0.29	0.57	4	1121	5	0	3	2	10
RFA_00659	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	1118	12	0	10	2	14
RFA_00664	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	980	11	0	10	1	14
RFA_00667	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	981	10	1	8	1	14
RFA_00668	Hammerhead_1 links to Rfam database...	0.50	0.43	0.60	6	980	4	0	4	0	8
RFA_00672	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	895	9	0	8	1	13
RFA_00673	Hammerhead_1 links to Rfam database...	0.47	0.36	0.63	5	1120	4	0	3	1	9
RFA_00674	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	1117	11	0	11	0	14
RFA_00675	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	981	9	1	8	0	14
RFA_00677	Hammerhead_1 links to Rfam database...	0.69	0.64	0.75	9	978	5	0	3	2	5
RFA_00678	Hammerhead_1 links to Rfam database...	0.53	0.29	1.00	4	942	0	0	0	0	10
RFA_00680	Hammerhead_1 links to Rfam database...	0.74	0.71	0.77	10	1115	6	0	3	3	4
RFA_00683	-	-0.01	0.00	0.00	0	1026	9	0	9	0	14
RFA_00684	Hammerhead_1 links to Rfam database...	0.84	0.71	1.00	10	980	1	0	0	1	4
RFA_00685	Hammerhead_1 links to Rfam database...	0.47	0.36	0.63	5	982	3	0	3	0	9
RFA_00703	Hammerhead_1 links to Rfam database...	0.30	0.36	0.25	5	4258	19	4	11	4	9
RFA_00704	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	983	8	0	7	1	14
RFA_00705	Hammerhead_1 links to Rfam database...	0.84	0.71	1.00	10	1025	0	0	0	0	4
RFA_00706	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	1026	9	0	9	0	14
RFA_00707	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	1030	5	0	5	0	14
RFA_00708	Hammerhead_1 links to Rfam database...	0.40	0.29	0.57	4	1028	3	0	3	0	10
RFA_00709	Hammerhead_1 links to Rfam database...	0.28	0.21	0.38	3	982	6	0	5	1	11
RFA_00710	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	981	9	0	9	0	14
RFA_00711	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	1026	9	0	9	0	14
RFA_00715	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	939	7	0	7	0	14
RFA_00716	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	939	7	0	7	0	14
RFA_00717	Hammerhead_1 links to Rfam database...	0.35	0.29	0.44	4	894	5	0	5	0	10
RFA_00720	-	0.84	0.71	1.00	10	1166	0	0	0	0	4
RFA_00721	-	0.40	0.29	0.57	4	1169	3	0	3	0	10
RFA_00730	s2m links to Rfam database...	0.51	0.42	0.63	5	895	4	1	2	1	7
RFA_00731	s2m links to Rfam database...	0.48	0.42	0.56	5	894	5	1	3	1	7
RFA_00733	s2m links to Rfam database...	0.51	0.42	0.63	5	895	4	0	3	1	7
RFA_00734	s2m links to Rfam database...	0.18	0.17	0.22	2	894	8	0	7	1	10
RFA_00736	s2m links to Rfam database...	0.48	0.42	0.56	5	894	5	1	3	1	7
RFA_00737	s2m links to Rfam database...	0.43	0.42	0.45	5	892	7	0	6	1	7
RFA_00745	s2m links to Rfam database...	-0.01	0.00	0.00	0	938	8	1	7	0	12
RFA_00749	s2m links to Rfam database...	0.48	0.42	0.56	5	894	5	1	3	1	7
RFA_00758	s2m links to Rfam database...	-0.01	0.00	0.00	0	898	5	0	5	0	12
RFA_00762	s2m links to Rfam database...	0.31	0.33	0.31	4	890	9	2	7	0	8
RFA_00763	s2m links to Rfam database...	0.43	0.42	0.45	5	892	7	0	6	1	7
RFA_00764	s2m links to Rfam database...	0.51	0.42	0.63	5	895	4	0	3	1	7
RFA_00765	s2m links to Rfam database...	0.51	0.42	0.63	5	895	4	0	3	1	7
RFA_00767	Corona_pk3 links to Rfam database...	1.00	1.00	1.00	18	1873	4	0	0	4	0
RFA_00768	Corona_pk3 links to Rfam database...	1.00	1.00	1.00	18	1873	0	0	0	0	0
RFA_00769	Corona_pk3 links to Rfam database...	0.97	1.00	0.95	18	1934	1	1	0	0	0
RFA_00770	Corona_pk3 links to Rfam database...	0.88	0.78	1.00	14	2002	3	0	0	3	4
RFA_00773	Corona_pk3 links to Rfam database...	0.97	1.00	0.95	18	1934	4	1	0	3	0
RFA_00779	Corona_pk3 links to Rfam database...	0.97	0.94	1.00	17	1936	0	0	0	0	1
RFA_00809	RydC links to Rfam database...	0.79	0.81	0.76	13	2128	4	0	4	0	3
SPR_00007	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00009	tRNA links to Rfam database...	0.93	1.00	0.87	20	2827	3	3	0	0	0
SPR_00010	tRNA links to Rfam database...	0.93	1.00	0.88	21	2826	3	3	0	0	0
SPR_00012	tRNA links to Rfam database...	-0.01	0.00	0.00	0	2832	18	0	18	0	20
SPR_00013	tRNA links to Rfam database...	0.97	0.95	1.00	19	2831	0	0	0	0	1
SPR_00016	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00017	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00020	tRNA links to Rfam database...	0.85	0.85	0.85	17	2681	5	0	3	2	3
SPR_00022	tRNA links to Rfam database...	0.81	0.81	0.81	17	2905	4	2	2	0	4
SPR_00023	tRNA links to Rfam database...	0.73	0.86	0.62	18	2821	11	5	6	0	3
SPR_00025	tRNA links to Rfam database...	0.91	1.00	0.83	20	2902	5	4	0	1	0
SPR_00026	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00027	tRNA links to Rfam database...	0.92	1.00	0.84	21	2901	4	4	0	0	0
SPR_00029	tRNA links to Rfam database...	-0.01	0.00	0.00	0	2612	16	0	16	0	20
SPR_00030	-	0.31	0.24	0.42	5	2473	7	0	7	0	16
SPR_00032	tRNA links to Rfam database...	1.00	1.00	1.00	21	2535	1	0	0	1	0
SPR_00033	tRNA links to Rfam database...	0.21	0.19	0.25	4	2612	12	3	9	0	17
SPR_00034	-	0.90	0.81	1.00	17	2468	1	0	0	1	4
SPR_00036	tRNA links to Rfam database...	0.73	0.80	0.67	16	2751	9	8	0	1	4
SPR_00044	tRNA links to Rfam database...	0.43	0.50	0.38	10	2824	16	4	12	0	10
SPR_00045	tRNA links to Rfam database...	0.95	0.95	0.95	21	2828	1	0	1	0	1
SPR_00060	tRNA links to Rfam database...	0.31	0.33	0.30	7	2752	16	6	10	0	14
SPR_00064	tRNA links to Rfam database...	0.52	0.57	0.48	12	2825	13	2	11	0	9
SPR_00065	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00066	tRNA links to Rfam database...	0.93	1.00	0.88	21	2826	3	3	0	0	0
SPR_00068	tRNA links to Rfam database...	0.93	1.00	0.88	21	2826	3	3	0	0	0
SPR_00070	tRNA links to Rfam database...	0.57	0.57	0.57	12	2829	9	5	4	0	9
SPR_00074	tRNA links to Rfam database...	0.97	0.95	1.00	19	2831	1	0	0	1	1
SPR_00078	-	0.82	0.67	1.00	10	1881	2	0	0	2	5
SPR_00079	tRNA links to Rfam database...	0.83	0.68	1.00	13	2472	1	0	0	1	6
SPR_00080	tRNA links to Rfam database...	0.83	0.68	1.00	13	2402	0	0	0	0	6
SPR_00086	tRNA links to Rfam database...	0.55	0.57	0.55	12	2828	10	4	6	0	9
SPR_00087	tRNA links to Rfam database...	0.95	0.90	1.00	18	2832	0	0	0	0	2
SPR_00088	tRNA links to Rfam database...	0.88	0.90	0.86	18	2829	3	3	0	0	2
SPR_00089	tRNA links to Rfam database...	0.19	0.20	0.19	4	2829	17	6	11	0	16
SPR_00090	tRNA links to Rfam database...	0.95	0.90	1.00	18	2832	0	0	0	0	2
SPR_00091	tRNA links to Rfam database...	0.95	0.90	1.00	18	2832	0	0	0	0	2
SPR_00095	tRNA links to Rfam database...	0.55	0.57	0.55	12	2828	10	4	6	0	9
SPR_00111	tRNA links to Rfam database...	0.93	1.00	0.88	21	2677	4	3	0	1	0
SPR_00112	tRNA links to Rfam database...	1.00	1.00	1.00	21	2680	2	0	0	2	0
SPR_00113	tRNA links to Rfam database...	0.92	0.85	1.00	17	2758	1	0	0	1	3
SPR_00114	tRNA links to Rfam database...	1.00	1.00	1.00	21	2680	1	0	0	1	0
SPR_00115	tRNA links to Rfam database...	0.73	0.76	0.70	16	2678	7	4	3	0	5
SPR_00116	tRNA links to Rfam database...	1.00	1.00	1.00	21	2680	2	0	0	2	0
SPR_00117	tRNA links to Rfam database...	0.63	0.71	0.56	15	2823	12	5	7	0	6
SPR_00121	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	3	0	0	3	0
SPR_00124	tRNA links to Rfam database...	0.57	0.50	0.65	11	2539	6	2	4	0	11
SPR_00126	-	-0.01	0.00	0.00	0	2067	13	5	8	0	20
SPR_00127	-	0.28	0.28	0.29	5	2398	14	2	10	2	13
SPR_00137	tRNA links to Rfam database...	0.84	0.86	0.82	18	2904	10	0	4	6	3
SPR_00138	tRNA links to Rfam database...	0.83	0.85	0.81	17	2905	5	1	3	1	3
SPR_00139	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	1	0	0	1	0
SPR_00141	tRNA links to Rfam database...	1.00	1.00	1.00	20	2755	1	0	0	1	0
SPR_00142	-	0.36	0.26	0.50	5	2618	5	0	5	0	14
SPR_00153	tRNA links to Rfam database...	0.89	0.95	0.83	20	2902	4	4	0	0	1
SPR_00155	tRNA links to Rfam database...	0.92	1.00	0.84	21	2901	4	4	0	0	0
SPR_00156	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00164	tRNA links to Rfam database...	0.25	0.24	0.28	5	2908	13	0	13	0	16
SPR_00166	-	0.73	0.63	0.86	12	2542	3	0	2	1	7
SPR_00167	tRNA links to Rfam database...	1.00	1.00	1.00	20	2536	1	0	0	1	0
SPR_00176	tRNA links to Rfam database...	0.78	0.80	0.76	16	2829	5	2	3	0	4
SPR_00177	tRNA links to Rfam database...	0.70	0.76	0.64	16	2825	9	3	6	0	5
SPR_00178	tRNA links to Rfam database...	0.73	0.76	0.70	16	2827	7	3	4	0	5
SPR_00183	-	0.41	0.35	0.50	7	2836	7	0	7	0	13
SPR_00191	tRNA links to Rfam database...	0.17	0.19	0.17	4	2826	20	4	16	0	17
SPR_00200	tRNA links to Rfam database...	0.68	0.76	0.62	16	2824	10	7	3	0	5
SPR_00209	tRNA links to Rfam database...	0.61	0.63	0.60	12	3550	8	1	7	0	7
SPR_00213	tRNA links to Rfam database...	-0.01	0.00	0.00	0	3802	26	4	22	0	21
SPR_00215	tRNA links to Rfam database...	0.95	0.95	0.95	19	3550	5	0	1	4	1
SPR_00218	tRNA links to Rfam database...	0.51	0.60	0.44	12	3714	17	8	7	2	8
SPR_00219	tRNA links to Rfam database...	1.00	1.00	1.00	20	3721	7	0	0	7	0
SPR_00220	tRNA links to Rfam database...	0.29	0.30	0.29	6	3720	15	3	12	0	14
SPR_00221	tRNA links to Rfam database...	0.24	0.24	0.25	5	3721	19	1	14	4	16
SPR_00223	tRNA links to Rfam database...	0.70	0.65	0.76	13	3553	8	2	2	4	7
SPR_00224	tRNA links to Rfam database...	-0.01	0.00	0.00	0	3720	23	3	18	2	20
SPR_00225	tRNA links to Rfam database...	0.90	0.86	0.95	18	3722	1	0	1	0	3
SPR_00226	tRNA links to Rfam database...	0.78	0.86	0.72	18	3630	7	6	1	0	3
SPR_00227	tRNA links to Rfam database...	0.82	0.86	0.78	18	3463	5	4	1	0	3
SPR_00228	tRNA links to Rfam database...	0.89	1.00	0.80	20	3803	6	5	0	1	0
SPR_00229	tRNA links to Rfam database...	0.85	0.81	0.89	17	3384	2	0	2	0	4
SPR_00230	tRNA links to Rfam database...	0.49	0.52	0.46	11	3546	13	2	11	0	10
SPR_00235	tRNA links to Rfam database...	0.50	0.57	0.44	12	3714	15	7	8	0	9
SPR_00236	tRNA links to Rfam database...	0.25	0.25	0.26	5	3551	14	4	10	0	15
SPR_00246	tRNA links to Rfam database...	0.52	0.45	0.60	9	2686	8	1	5	2	11
SPR_00263	tRNA links to Rfam database...	0.74	0.76	0.73	16	3548	9	1	5	3	5
SPR_00273	tRNA links to Rfam database...	0.44	0.43	0.45	9	2830	11	0	11	0	12
SPR_00276	tRNA links to Rfam database...	0.98	0.95	1.00	20	2906	0	0	0	0	1
SPR_00279	tRNA links to Rfam database...	0.53	0.52	0.55	11	2906	9	4	5	0	10
SPR_00281	-	0.24	0.24	0.27	4	2001	11	3	8	0	13
SPR_00289	tRNA links to Rfam database...	0.73	0.75	0.71	15	2905	8	2	4	2	5
SPR_00294	tRNA links to Rfam database...	0.57	0.57	0.57	12	2829	9	2	7	0	9
SPR_00295	tRNA links to Rfam database...	0.80	0.90	0.70	19	2748	9	6	2	1	2
SPR_00297	tRNA links to Rfam database...	0.78	0.76	0.80	16	2755	4	1	3	0	5
SPR_00298	tRNA links to Rfam database...	0.84	1.00	0.71	20	2747	8	8	0	0	0
SPR_00309	tRNA links to Rfam database...	0.68	0.76	0.62	16	2900	11	5	5	1	5
SPR_00314	tRNA links to Rfam database...	0.71	0.76	0.67	16	2902	8	6	2	0	5
SPR_00315	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	2	0	0	2	0
SPR_00316	tRNA links to Rfam database...	0.92	1.00	0.84	21	2901	5	4	0	1	0
SPR_00317	tRNA links to Rfam database...	0.51	0.60	0.44	12	2899	15	8	7	0	8
SPR_00318	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	2	0	0	2	0
SPR_00320	tRNA links to Rfam database...	0.24	0.26	0.23	5	2753	18	8	9	1	14
SPR_00327	tRNA links to Rfam database...	0.53	0.52	0.55	11	2983	9	1	8	0	10
SPR_00329	tRNA links to Rfam database...	0.59	0.62	0.57	13	2827	11	1	9	1	8
SPR_00331	tRNA links to Rfam database...	0.83	0.85	0.81	17	2754	4	2	2	0	3
SPR_00333	tRNA links to Rfam database...	0.86	0.86	0.86	18	2754	3	0	3	0	3
SPR_00339	tRNA links to Rfam database...	0.51	0.52	0.50	11	2753	12	5	6	1	10
SPR_00353	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00356	tRNA links to Rfam database...	0.87	0.95	0.80	20	2750	5	4	1	0	1
SPR_00357	tRNA links to Rfam database...	0.90	1.00	0.81	21	2900	5	5	0	0	0
SPR_00358	tRNA links to Rfam database...	0.89	1.00	0.80	20	2901	5	5	0	0	0
SPR_00359	tRNA links to Rfam database...	0.71	0.77	0.65	17	2900	10	4	5	1	5
SPR_00360	tRNA links to Rfam database...	0.32	0.32	0.33	7	2680	14	3	11	0	15
SPR_00362	-	0.50	0.54	0.47	7	1416	8	4	4	0	6
SPR_00363	-	-0.01	0.00	0.00	0	1582	14	3	11	0	15
SPR_00364	-	0.28	0.20	0.40	4	2201	6	2	4	0	16
SPR_00365	-	0.60	0.59	0.62	13	2535	8	1	7	0	9
SPR_00366	-	0.76	0.70	0.82	14	2539	3	1	2	0	6
SPR_00367	-	0.69	0.59	0.81	13	2469	3	0	3	0	9
SPR_00369	tRNA links to Rfam database...	0.51	0.57	0.46	12	2749	14	6	8	0	9
SPR_00370	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	0	0	0	0	0
SPR_00373	tRNA links to Rfam database...	0.93	1.00	0.88	21	2826	3	3	0	0	0
SPR_00374	tRNA links to Rfam database...	0.93	1.00	0.88	21	2826	3	3	0	0	0
SPR_00385	tRNA links to Rfam database...	0.75	0.75	0.75	15	4258	11	0	5	6	5
SPR_00386	tRNA links to Rfam database...	-0.01	0.00	0.00	0	4163	24	4	19	1	20
SPR_00388	tRNA links to Rfam database...	0.90	1.00	0.81	21	4160	13	5	0	8	0
SPR_00389	tRNA links to Rfam database...	0.83	0.85	0.81	17	3984	10	1	3	6	3
SPR_00390	tRNA links to Rfam database...	0.60	0.62	0.59	13	4256	17	0	9	8	8
SPR_00391	tRNA links to Rfam database...	0.92	1.00	0.84	21	3803	9	4	0	5	0
SPR_00393	tRNA links to Rfam database...	0.60	0.60	0.60	12	3808	13	3	5	5	8
SPR_00394	tRNA links to Rfam database...	0.26	0.24	0.29	5	3638	16	5	7	4	16
SPR_00395	tRNA links to Rfam database...	0.56	0.57	0.55	12	3983	15	6	4	5	9
SPR_00398	-	-0.01	0.00	0.00	0	2197	14	2	12	0	13
SPR_00399	-	0.67	0.75	0.60	12	2465	9	4	4	1	4
SPR_00402	tRNA links to Rfam database...	1.00	1.00	1.00	21	2535	1	0	0	1	0
SPR_00412	tRNA links to Rfam database...	0.72	0.86	0.60	18	3625	13	8	4	1	3
SPR_00414	tRNA links to Rfam database...	0.82	0.86	0.78	18	3547	9	4	1	4	3
SPR_00415	tRNA links to Rfam database...	0.84	0.86	0.82	18	3548	8	3	1	4	3
SPR_00416	tRNA links to Rfam database...	0.24	0.24	0.25	5	3550	19	2	13	4	16
SPR_00417	tRNA links to Rfam database...	0.52	0.55	0.50	12	3546	16	3	9	4	10
SPR_00418	tRNA links to Rfam database...	0.52	0.55	0.50	12	3546	16	3	9	4	10
SPR_00426	tRNA links to Rfam database...	1.00	1.00	1.00	21	2982	3	0	0	3	0
SPR_00434	tRNA links to Rfam database...	0.90	1.00	0.81	21	2824	5	5	0	0	0
SPR_00435	tRNA links to Rfam database...	0.89	0.95	0.83	20	2826	4	4	0	0	1
SPR_00436	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	1	0	0	1	0
SPR_00437	tRNA links to Rfam database...	0.88	1.00	0.78	21	2748	7	6	0	1	0
SPR_00438	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	0	0	0	0	0
SPR_00439	tRNA links to Rfam database...	0.65	0.60	0.71	12	2684	7	1	4	2	8
SPR_00445	tRNA links to Rfam database...	0.85	0.85	0.85	17	2983	3	2	1	0	3
SPR_00452	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00455	tRNA links to Rfam database...	0.51	0.52	0.50	11	2828	11	5	6	0	10
SPR_00456	tRNA links to Rfam database...	0.68	0.76	0.62	16	2824	11	4	6	1	5
SPR_00458	tRNA links to Rfam database...	0.56	0.55	0.58	11	2831	8	3	5	0	9
SPR_00459	tRNA links to Rfam database...	0.61	0.60	0.63	12	2756	7	4	3	0	8
SPR_00461	tRNA links to Rfam database...	0.83	0.68	1.00	13	2543	1	0	0	1	6
SPR_00462	tRNA links to Rfam database...	0.72	0.74	0.70	14	2395	7	3	3	1	5
SPR_00467	tRNA links to Rfam database...	0.40	0.45	0.36	9	2825	16	2	14	0	11
SPR_00476	tRNA links to Rfam database...	0.76	0.76	0.76	16	2754	5	0	5	0	5
SPR_00478	tRNA links to Rfam database...	0.70	0.76	0.64	16	2750	9	4	5	0	5
SPR_00479	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00481	tRNA links to Rfam database...	0.48	0.48	0.50	10	2755	11	0	10	1	11
SPR_00482	tRNA links to Rfam database...	0.90	0.81	1.00	17	2684	0	0	0	0	4
SPR_00483	tRNA links to Rfam database...	0.92	1.00	0.84	21	2825	4	4	0	0	0
SPR_00487	tRNA links to Rfam database...	0.82	0.82	0.82	18	2679	4	4	0	0	4
SPR_00489	tRNA links to Rfam database...	0.81	0.81	0.81	17	2680	6	4	0	2	4
SPR_00493	tRNA links to Rfam database...	0.89	0.95	0.84	21	2750	4	2	2	0	1
SPR_00496	tRNA links to Rfam database...	0.70	0.76	0.64	16	2750	9	4	5	0	5
SPR_00497	tRNA links to Rfam database...	0.76	0.76	0.76	16	2754	5	0	5	0	5
SPR_00498	tRNA links to Rfam database...	0.83	0.85	0.81	17	2982	5	0	4	1	3
SPR_00502	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00504	tRNA links to Rfam database...	0.91	1.00	0.83	20	2826	4	4	0	0	0
SPR_00505	tRNA links to Rfam database...	0.67	0.75	0.60	15	2901	10	3	7	0	5
SPR_00506	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00509	tRNA links to Rfam database...	0.71	0.75	0.68	15	2904	7	2	5	0	5
SPR_00512	tRNA links to Rfam database...	0.71	0.75	0.68	15	2904	7	2	5	0	5
SPR_00513	tRNA links to Rfam database...	0.44	0.45	0.43	9	2905	12	1	11	0	11
SPR_00517	tRNA links to Rfam database...	0.71	0.75	0.68	15	2828	9	4	3	2	5
SPR_00518	tRNA links to Rfam database...	0.91	1.00	0.83	20	2902	4	4	0	0	0
SPR_00519	tRNA links to Rfam database...	0.80	0.76	0.84	16	2537	4	0	3	1	5
SPR_00520	tRNA links to Rfam database...	0.51	0.50	0.53	9	2539	8	3	5	0	9
SPR_00533	tRNA links to Rfam database...	0.92	1.00	0.84	21	2750	4	4	0	0	0
SPR_00541	tRNA links to Rfam database...	0.50	0.57	0.44	12	3459	15	6	9	0	9
SPR_00542	tRNA links to Rfam database...	0.84	0.86	0.82	18	3548	7	2	2	3	3
SPR_00548	tRNA links to Rfam database...	0.80	0.86	0.75	18	3379	6	2	4	0	3
SPR_00550	tRNA links to Rfam database...	0.35	0.32	0.39	7	3810	14	0	11	3	15
SPR_00552	tRNA links to Rfam database...	0.27	0.26	0.29	5	2684	12	2	10	0	14
SPR_00557	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00561	tRNA links to Rfam database...	0.37	0.43	0.32	9	2822	19	1	18	0	12
SPR_00590	tRNA links to Rfam database...	0.56	0.60	0.52	12	2980	11	4	7	0	8
SPR_00593	tRNA links to Rfam database...	0.77	0.79	0.75	15	2755	6	4	1	1	4
SPR_00595	tRNA links to Rfam database...	0.70	0.76	0.64	16	2750	9	6	3	0	5
SPR_00598	tRNA links to Rfam database...	0.54	0.57	0.52	12	2980	12	5	6	1	9
SPR_00610	tRNA links to Rfam database...	0.87	0.81	0.94	17	2538	2	0	1	1	4
SPR_00620	tRNA links to Rfam database...	0.79	0.81	0.77	17	2981	8	2	3	3	4
SPR_00629	-	-0.01	0.00	0.00	0	1873	18	6	12	0	15
SPR_00632	tRNA links to Rfam database...	0.92	0.85	1.00	17	2539	0	0	0	0	3
SPR_00633	tRNA links to Rfam database...	0.83	0.85	0.81	17	2535	4	4	0	0	3
SPR_00721	tRNA links to Rfam database...	0.18	0.19	0.19	4	2905	17	2	15	0	17
SPR_00722	tRNA links to Rfam database...	0.76	0.80	0.73	16	2904	6	4	2	0	4
SPR_00750	tRNA links to Rfam database...	0.79	0.63	1.00	12	2544	1	0	0	1	7
SPR_00758	tRNA links to Rfam database...	0.53	0.57	0.50	12	2979	12	2	10	0	9
SPR_00760	tRNA links to Rfam database...	0.39	0.43	0.36	9	3545	16	1	15	0	12
SPR_00768	-	0.35	0.39	0.33	7	2059	14	6	8	0	11
SPR_00777	tRNA links to Rfam database...	0.70	0.70	0.70	14	2608	6	1	5	0	6
SPR_00810	tRNA links to Rfam database...	0.85	0.89	0.81	17	3549	9	4	0	5	2
SPR_00816	tRNA links to Rfam database...	0.34	0.35	0.33	7	3465	17	3	11	3	13
SPR_00832	-	0.29	0.27	0.33	4	1641	8	3	5	0	11
SPR_00867	tRNA links to Rfam database...	0.49	0.52	0.46	11	2902	13	3	10	0	10
SPR_00868	tRNA links to Rfam database...	0.95	0.95	0.95	20	2905	2	0	1	1	1
SPR_00882	tRNA links to Rfam database...	0.95	0.90	1.00	18	2610	0	0	0	0	2
SPR_00912	tRNA links to Rfam database...	0.77	0.81	0.74	17	2980	10	4	2	4	4
SPR_00913	tRNA links to Rfam database...	0.26	0.33	0.22	7	2971	25	6	19	0	14
SPR_00932	tRNA links to Rfam database...	0.78	0.76	0.80	16	2830	5	1	3	1	5
SPR_00938	-	-0.01	0.00	0.00	0	1635	18	5	13	0	15
SPR_00943	tRNA links to Rfam database...	0.85	0.85	0.85	17	2536	4	0	3	1	3
SPR_00957	tRNA links to Rfam database...	0.83	0.81	0.85	17	2983	4	0	3	1	4
SPR_01040	tRNA links to Rfam database...	0.17	0.19	0.16	4	2750	21	0	21	0	17
SPR_01051	tRNA links to Rfam database...	0.40	0.48	0.34	10	2527	19	4	15	0	11
SPR_01088	tRNA links to Rfam database...	0.18	0.19	0.18	4	2904	18	1	17	0	17
SPR_01095	tRNA links to Rfam database...	0.38	0.43	0.35	9	2824	17	5	12	0	12
SPR_01103	-	0.82	0.67	1.00	10	1760	1	0	0	1	5
SPR_01106	tRNA links to Rfam database...	0.70	0.76	0.64	16	2531	9	3	6	0	5
SPR_01117	tRNA links to Rfam database...	0.31	0.33	0.29	7	2979	18	1	16	1	14
SPR_01143	tRNA links to Rfam database...	0.41	0.48	0.37	10	2529	17	8	9	0	11
SPR_01157	tRNA links to Rfam database...	0.79	0.81	0.77	17	2753	6	4	1	1	4
SRP_00005	-	0.23	0.25	0.21	6	3977	22	4	18	0	18
SRP_00008	Bacteria_small_SRP links to Rfam database...	0.73	0.72	0.75	18	2902	6	0	6	0	7
SRP_00042	Bacteria_small_SRP links to Rfam database...	0.38	0.36	0.41	9	3983	14	4	9	1	16
SRP_00046	Bacteria_small_SRP links to Rfam database...	0.38	0.38	0.40	12	4723	19	1	17	1	20
SRP_00083	-	0.39	0.33	0.45	10	4829	12	0	12	0	20
SRP_00094	Bacteria_small_SRP links to Rfam database...	0.42	0.42	0.43	10	4072	13	2	11	0	14
SRP_00095	Bacteria_small_SRP links to Rfam database...	0.25	0.28	0.23	7	3975	23	5	18	0	18
SRP_00101	-	0.32	0.32	0.33	8	3546	17	2	14	1	17
SRP_00107	Bacteria_small_SRP links to Rfam database...	0.14	0.16	0.13	3	3631	23	4	17	2	16
SRP_00121	Bacteria_small_SRP links to Rfam database...	0.32	0.32	0.32	8	4253	17	1	16	0	17
SRP_00132	Bacteria_small_SRP links to Rfam database...	0.35	0.34	0.37	10	4824	20	2	15	3	19
SRP_00137	Bacteria_small_SRP links to Rfam database...	0.59	0.52	0.68	13	4167	6	2	4	0	12
SRP_00138	-	0.92	0.85	1.00	23	3982	3	0	0	3	4
SRP_00139	-	-0.01	0.00	0.00	0	2132	13	3	10	0	12
SRP_00161	Bacteria_small_SRP links to Rfam database...	0.15	0.14	0.18	3	2833	14	2	12	0	19
SRP_00162	Bacteria_small_SRP links to Rfam database...	0.33	0.30	0.37	7	2907	13	2	10	1	16
SRP_00163	Bacteria_small_SRP links to Rfam database...	0.28	0.27	0.30	7	3463	16	4	12	0	19
SRP_00170	Bacteria_small_SRP links to Rfam database...	0.36	0.36	0.38	9	4071	16	2	13	1	16
SRP_00194	Bacteria_small_SRP links to Rfam database...	0.56	0.48	0.67	10	3225	5	0	5	0	11
SRP_00196	-	0.28	0.25	0.33	7	4635	14	2	12	0	21
SRP_00209	Bacteria_small_SRP links to Rfam database...	0.40	0.41	0.39	11	4628	17	3	14	0	16
SRP_00213	Bacteria_small_SRP links to Rfam database...	0.36	0.40	0.33	10	4156	20	5	15	0	15
SRP_00214	-	0.62	0.46	0.85	11	3068	2	0	2	0	13
SRP_00215	Bacteria_small_SRP links to Rfam database...	0.71	0.64	0.80	16	3220	4	0	4	0	9
SRP_00216	Bacteria_small_SRP links to Rfam database...	0.75	0.67	0.86	18	3382	3	1	2	0	9
SRP_00217	Bacteria_small_SRP links to Rfam database...	0.30	0.29	0.32	7	3299	15	4	11	0	17
SRP_00219	Bacteria_small_SRP links to Rfam database...	0.31	0.30	0.33	7	3300	15	1	13	1	16
SRP_00221	-	0.50	0.52	0.48	11	3380	12	3	9	0	10
SRP_00222	Bacteria_small_SRP links to Rfam database...	0.42	0.44	0.41	11	3054	16	2	14	0	14
SRP_00223	-	0.21	0.20	0.22	4	3385	14	5	9	0	16
SRP_00256	-	-0.01	0.00	0.00	0	4253	26	2	23	1	22
SRP_00266	Bacteria_small_SRP links to Rfam database...	0.51	0.45	0.59	13	4634	9	0	9	0	16
SRP_00268	Bacteria_small_SRP links to Rfam database...	0.48	0.48	0.48	13	4159	14	2	12	0	14
SRP_00270	Bacteria_small_SRP links to Rfam database...	0.46	0.45	0.48	14	4627	15	2	13	0	17
SRP_00271	Bacteria_small_SRP links to Rfam database...	0.16	0.17	0.17	4	3217	19	2	17	0	20
SRP_00284	-	0.42	0.38	0.48	11	3718	12	1	11	0	18
SRP_00285	Bacteria_small_SRP links to Rfam database...	0.93	0.87	1.00	26	3715	0	0	0	0	4
SRP_00310	Bacteria_small_SRP links to Rfam database...	0.18	0.17	0.19	4	2905	17	4	13	0	19
SRP_00312	Bacteria_small_SRP links to Rfam database...	0.32	0.37	0.29	10	4151	25	4	21	0	17
SRP_00315	Bacteria_small_SRP links to Rfam database...	0.18	0.17	0.20	4	2906	16	1	15	0	19
SRP_00318	Bacteria_small_SRP links to Rfam database...	0.44	0.43	0.45	10	2981	12	2	10	0	13
SRP_00325	Bacteria_small_SRP links to Rfam database...	0.41	0.33	0.52	11	4350	10	0	10	0	22
SRP_00341	Bacteria_small_SRP links to Rfam database...	0.11	0.10	0.14	3	4732	18	1	17	0	28
SRP_00342	Bacteria_small_SRP links to Rfam database...	0.38	0.36	0.41	9	3983	13	2	11	0	16
SRP_00350	Bacteria_small_SRP links to Rfam database...	0.34	0.33	0.35	9	3890	17	3	14	0	18
SRP_00363	Bacteria_small_SRP links to Rfam database...	0.63	0.40	1.00	12	4741	2	0	0	2	18
SRP_00365	Bacteria_small_SRP links to Rfam database...	0.60	0.59	0.62	16	3377	10	0	10	0	11
SRP_00383	Bacteria_small_SRP links to Rfam database...	0.11	0.13	0.12	3	3214	23	2	21	0	21

^top

Performance of Alterna - scored lower in this pairwise comparison

1. Total counts & total scores for Alterna

Total Base Pair Counts
Total TP	6548
Total TN	1294087
Total FP	5644
Total FP CONTRA	829
Total FP INCONS	4133
Total FP COMP	682
Total FN	5380

Total Scores
MCC	0.555
Average MCC ± 95% Confidence Intervals	0.579 ± 0.025
Sensitivity	0.549
Positive Predictive Value	0.569
Nr of predictions	673

^top

2. Individual counts for Alterna [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
NDB_00014	-	0.89	0.80	1.00	8	182	0	0	0	0	2
NDB_00015	-	0.38	0.40	0.40	4	266	6	0	6	0	6
NDB_00016	-	0.91	0.83	1.00	10	266	0	0	0	0	2
NDB_00047	-	0.91	0.83	1.00	10	266	0	0	0	0	2
NDB_00048	-	-0.02	0.00	0.00	0	1514	26	0	26	0	28
NDB_00049	-	0.92	0.85	1.00	11	314	0	0	0	0	2
NDB_00051	tRNA links to Rfam database...	0.71	0.67	0.76	16	2754	5	3	2	0	8
PDB_00001	-	-0.02	0.00	0.00	0	272	4	0	4	0	12
PDB_00002	-	1.00	1.00	1.00	8	202	0	0	0	0	0
PDB_00003	-	0.81	0.67	1.00	8	343	0	0	0	0	4
PDB_00004	-	0.86	0.74	1.00	14	806	0	0	0	0	5
PDB_00005	Tymo_tRNA-like links to Rfam database...	0.88	0.79	1.00	11	935	0	0	0	0	3
PDB_00006	-	1.00	1.00	1.00	14	689	0	0	0	0	0
PDB_00011	-	0.91	0.83	1.00	10	266	0	0	0	0	2
PDB_00012	mir-TAR links to Rfam database...	1.00	1.00	1.00	7	399	3	0	0	3	0
PDB_00013	-	1.00	1.00	1.00	10	396	1	0	0	1	0
PDB_00017	-	0.66	0.60	0.75	9	691	3	0	3	0	6
PDB_00018	-	0.20	0.20	0.22	4	1017	14	2	12	0	16
PDB_00019	-	0.45	0.50	0.44	4	244	5	0	5	0	4
PDB_00020	-	0.38	0.35	0.44	7	764	9	0	9	0	13
PDB_00021	-	1.00	1.00	1.00	8	182	0	0	0	0	0
PDB_00022	-	0.94	0.89	1.00	8	245	0	0	0	0	1
PDB_00032	-	0.78	0.73	0.85	11	890	3	0	2	1	4
PDB_00034	-	0.66	0.58	0.78	7	369	2	0	2	0	5
PDB_00035	-	0.94	0.89	1.00	8	202	0	0	0	0	1
PDB_00036	-	-0.01	0.00	0.00	0	3459	27	1	26	0	27
PDB_00040	-	0.83	0.70	1.00	7	269	0	0	0	0	3
PDB_00041	-	0.70	0.50	1.00	6	624	0	0	0	0	6
PDB_00043	-	0.69	0.62	0.80	8	425	2	0	2	0	5
PDB_00048	-	1.00	1.00	1.00	9	291	1	0	0	1	0
PDB_00049	-	0.83	0.70	1.00	7	224	0	0	0	0	3
PDB_00053	-	0.73	0.55	1.00	6	429	0	0	0	0	5
PDB_00054	-	-0.04	0.00	0.00	0	184	6	0	6	0	10
PDB_00056	-	0.11	0.13	0.14	2	616	12	0	12	0	14
PDB_00057	-	0.90	0.90	0.90	9	341	2	0	1	1	1
PDB_00065	-	0.83	0.70	1.00	7	399	1	0	0	1	3
PDB_00070	tRNA links to Rfam database...	0.62	0.63	0.63	15	2826	9	1	8	0	9
PDB_00074	-	-0.03	0.00	0.00	0	370	8	0	8	0	12
PDB_00081	-	0.94	0.89	1.00	8	182	0	0	0	0	1
PDB_00088	-	0.86	0.75	1.00	9	426	1	0	0	1	3
PDB_00096	-	0.81	0.67	1.00	8	317	0	0	0	0	4
PDB_00098	-	0.81	0.67	1.00	4	227	0	0	0	0	2
PDB_00102	-	0.93	0.88	1.00	7	224	0	0	0	0	1
PDB_00104	-	-0.02	0.00	0.00	0	616	14	0	14	0	16
PDB_00107	-	0.95	0.91	1.00	10	455	1	0	0	1	1
PDB_00108	-	1.00	1.00	1.00	7	203	0	0	0	0	0
PDB_00113	-	0.94	0.89	1.00	8	223	0	0	0	0	1
PDB_00115	-	-0.02	0.00	0.00	0	549	12	0	12	0	16
PDB_00116	-	0.54	0.50	0.60	3	226	2	0	2	0	3
PDB_00119	-	0.95	0.90	1.00	9	244	0	0	0	0	1
PDB_00120	-	0.95	0.90	1.00	9	222	0	0	0	0	1
PDB_00121	-	0.95	0.90	1.00	9	222	0	0	0	0	1
PDB_00122	-	0.91	0.83	1.00	10	290	0	0	0	0	2
PDB_00123	-	-0.01	0.00	0.00	0	4151	35	0	35	0	36
PDB_00124	-	-0.02	0.00	0.00	0	488	8	2	6	0	10
PDB_00125	-	-0.03	0.00	0.00	0	225	6	0	6	0	10
PDB_00128	-	0.80	0.71	0.91	10	485	1	0	1	0	4
PDB_00130	-	1.00	1.00	1.00	6	270	2	0	0	2	0
PDB_00132	-	0.86	0.75	1.00	9	426	0	0	0	0	3
PDB_00134	-	0.79	0.63	1.00	5	373	0	0	0	0	3
PDB_00136	-	0.90	0.85	0.96	22	2392	3	0	1	2	4
PDB_00137	-	0.87	0.77	1.00	10	396	0	0	0	0	3
PDB_00138	-	0.79	0.63	1.00	5	373	0	0	0	0	3
PDB_00142	-	0.91	0.83	1.00	10	425	0	0	0	0	2
PDB_00149	-	0.89	0.80	1.00	12	691	0	0	0	0	3
PDB_00150	-	0.95	0.90	1.00	9	291	1	0	0	1	1
PDB_00152	-	0.93	0.88	1.00	7	183	0	0	0	0	1
PDB_00153	-	0.95	0.90	1.00	9	244	0	0	0	0	1
PDB_00155	-	0.52	0.50	0.57	4	318	3	0	3	0	4
PDB_00157	-	-0.01	0.00	0.00	0	3293	30	2	26	2	29
PDB_00158	-	0.77	0.60	1.00	12	849	0	0	0	0	8
PDB_00159	-	0.79	0.64	1.00	7	344	1	0	0	1	4
PDB_00160	-	0.94	0.89	1.00	8	268	0	0	0	0	1
PDB_00168	-	0.81	0.67	1.00	4	296	1	0	0	1	2
PDB_00169	-	0.43	0.40	0.50	4	223	4	0	4	0	6
PDB_00170	-	0.93	0.88	1.00	14	616	0	0	0	0	2
PDB_00171	-	0.70	0.50	1.00	6	429	0	0	0	0	6
PDB_00174	-	0.90	0.82	1.00	18	1017	0	0	0	0	4
PDB_00175	-	-0.01	0.00	0.00	0	4538	22	0	22	0	36
PDB_00178	-	0.68	0.55	0.86	6	521	2	0	1	1	5
PDB_00182	-	0.88	0.78	1.00	7	246	0	0	0	0	2
PDB_00183	-	0.24	0.22	0.29	5	1468	12	0	12	0	18
PDB_00184	-	0.87	0.77	1.00	10	551	0	0	0	0	3
PDB_00185	-	0.38	0.36	0.42	10	2902	15	0	14	1	18
PDB_00190	-	0.95	0.90	1.00	9	222	0	0	0	0	1
PDB_00192	-	0.17	0.14	0.24	5	3219	16	0	16	0	31
PDB_00196	-	0.92	0.86	1.00	24	1572	0	0	0	0	4
PDB_00197	-	1.00	1.00	1.00	7	293	3	0	0	3	0
PDB_00200	-	0.81	0.67	1.00	6	204	0	0	0	0	3
PDB_00201	-	0.77	0.60	1.00	6	319	0	0	0	0	4
PDB_00202	-	0.89	0.86	0.92	12	548	2	0	1	1	2
PDB_00203	-	0.96	0.92	1.00	12	549	0	0	0	0	1
PDB_00205	-	0.84	0.71	1.00	10	425	0	0	0	0	4
PDB_00206	-	0.86	0.75	1.00	6	270	0	0	0	0	2
PDB_00207	-	0.92	0.86	1.00	12	366	0	0	0	0	2
PDB_00209	-	0.68	0.55	0.86	6	554	1	1	0	0	5
PDB_00211	-	0.89	0.80	1.00	8	182	0	0	0	0	2
PDB_00214	-	0.73	0.55	1.00	6	400	0	0	0	0	5
PDB_00215	-	-0.02	0.00	0.00	0	1106	22	0	22	0	24
PDB_00219	-	1.00	1.00	1.00	7	203	0	0	0	0	0
PDB_00221	-	0.88	0.78	1.00	7	246	0	0	0	0	2
PDB_00224	-	0.93	0.88	1.00	7	183	0	0	0	0	1
PDB_00229	tRNA links to Rfam database...	0.91	0.87	0.95	20	2754	1	0	1	0	3
PDB_00234	-	-0.04	0.00	0.00	0	268	8	0	8	0	12
PDB_00236	-	-0.02	0.00	0.00	0	1110	18	0	18	0	24
PDB_00237	-	0.70	0.67	0.75	6	370	3	0	2	1	3
PDB_00239	-	0.33	0.28	0.42	5	808	7	1	6	0	13
PDB_00243	-	0.51	0.50	0.55	6	619	5	0	5	0	6
PDB_00248	-	0.91	0.83	1.00	10	266	0	0	0	0	2
PDB_00249	-	-0.02	0.00	0.00	0	273	3	0	3	0	11
PDB_00250	-	0.85	0.76	0.95	19	1750	3	0	1	2	6
PDB_00252	-	-0.02	0.00	0.00	0	765	16	2	13	1	15
PDB_00254	-	-0.04	0.00	0.00	0	266	10	0	10	0	12
PDB_00256	-	-0.02	0.00	0.00	0	319	6	6	0	0	4
PDB_00257	-	0.95	0.91	1.00	10	341	0	0	0	0	1
PDB_00258	-	1.00	1.00	1.00	8	245	0	0	0	0	0
PDB_00261	-	0.86	0.75	1.00	12	484	0	0	0	0	4
PDB_00262	-	0.25	0.25	0.27	6	1106	16	0	16	0	18
PDB_00264	-	-0.01	0.00	0.00	0	1113	15	0	15	0	18
PDB_00267	-	-0.03	0.00	0.00	0	366	12	0	12	0	14
PDB_00286	-	-0.03	0.00	0.00	0	184	8	0	6	2	6
PDB_00293	-	-0.01	0.00	0.00	0	1111	17	8	9	0	12
PDB_00312	-	1.00	1.00	1.00	9	426	0	0	0	0	0
PDB_00313	tRNA links to Rfam database...	0.78	0.74	0.82	14	2684	7	0	3	4	5
PDB_00317	-	1.00	1.00	1.00	10	368	0	0	0	0	0
PDB_00326	-	0.53	0.46	0.62	13	3720	9	0	8	1	15
PDB_00327	tRNA links to Rfam database...	0.31	0.30	0.32	7	3059	15	0	15	0	16
PDB_00339	-	0.83	0.69	1.00	11	655	0	0	0	0	5
PDB_00341	-	0.52	0.44	0.64	7	692	4	0	4	0	9
PDB_00342	-	-0.02	0.00	0.00	0	762	18	0	18	0	10
PDB_00343	-	0.92	0.86	1.00	18	1578	1	0	0	1	3
PDB_00347	-	0.81	0.75	0.88	15	1159	2	0	2	0	5
PDB_00349	-	0.92	0.86	1.00	12	934	0	0	0	0	2
PDB_00351	-	-0.02	0.00	0.00	0	554	7	0	7	0	12
PDB_00352	-	0.92	0.84	1.00	16	1209	0	0	0	0	3
PDB_00357	-	-0.01	0.00	0.00	0	770	10	4	6	0	10
PDB_00362	tRNA links to Rfam database...	0.93	0.91	0.95	20	2829	1	0	1	0	2
PDB_00365	-	0.96	0.93	1.00	13	422	0	0	0	0	1
PDB_00371	-	0.74	0.67	0.83	10	549	2	0	2	0	5
PDB_00377	-	1.00	1.00	1.00	12	516	0	0	0	0	0
PDB_00378	-	0.88	0.79	1.00	11	692	0	0	0	0	3
PDB_00392	tRNA links to Rfam database...	0.65	0.67	0.64	14	2828	8	2	6	0	7
PDB_00400	-	-0.01	0.00	0.00	0	3135	25	0	25	0	34
PDB_00402	tRNA links to Rfam database...	0.30	0.30	0.30	7	2752	16	0	16	0	16
PDB_00411	-	0.85	0.73	1.00	11	584	0	0	0	0	4
PDB_00420	-	0.66	0.60	0.75	6	488	5	0	2	3	4
PDB_00425	tRNA links to Rfam database...	0.65	0.64	0.67	14	2680	7	2	5	0	8
PDB_00430	tRNA links to Rfam database...	0.68	0.68	0.68	17	3215	8	3	5	0	8
PDB_00431	tRNA links to Rfam database...	0.47	0.45	0.50	9	2193	10	1	8	1	11
PDB_00454	-	-0.01	0.00	0.00	0	2669	32	0	32	0	32
PDB_00474	tRNA links to Rfam database...	0.53	0.52	0.55	12	2679	10	2	8	0	11
PDB_00481	-	-0.01	0.00	0.00	0	1873	18	0	18	0	26
PDB_00513	-	1.00	1.00	1.00	7	224	0	0	0	0	0
PDB_00522	-	0.56	0.56	0.59	10	1111	7	0	7	0	8
PDB_00526	-	-0.01	0.00	0.00	0	296	4	1	3	0	3
PDB_00527	-	-0.01	0.00	0.00	0	296	4	1	3	0	5
PDB_00537	-	0.82	0.78	0.88	7	398	3	0	1	2	2
PDB_00553	mir-TAR links to Rfam database...	1.00	1.00	1.00	11	454	0	0	0	0	0
PDB_00570	-	-0.01	0.00	0.00	0	2268	10	1	9	0	22
PDB_00571	tRNA links to Rfam database...	0.41	0.40	0.43	10	3298	13	3	10	0	15
PDB_00584	-	0.25	0.24	0.29	4	1471	11	0	10	1	13
PDB_00599	-	0.96	0.93	1.00	13	548	0	0	0	0	1
PDB_00603	-	0.95	0.90	1.00	9	244	0	0	0	0	1
PDB_00611	-	0.35	0.36	0.36	4	769	7	1	6	0	7
PDB_00617	-	0.95	0.90	1.00	9	267	0	0	0	0	1
PDB_00627	-	0.72	0.71	0.75	12	1637	6	0	4	2	5
PDB_00629	-	-0.01	0.00	0.00	0	1635	18	2	16	0	23
PDB_00637	-	0.23	0.24	0.23	5	2324	18	2	15	1	16
PDB_00648	-	-0.02	0.00	0.00	0	845	16	4	12	0	13
PDB_00667	tRNA links to Rfam database...	0.70	0.68	0.71	15	2829	8	2	4	2	7
PDB_00681	-	-0.01	0.00	0.00	0	1256	19	2	17	0	19
PDB_00682	-	-0.03	0.00	0.00	0	482	14	0	14	0	16
PDB_00686	-	0.94	0.89	1.00	17	686	0	0	0	0	2
PDB_00692	-	-0.01	0.00	0.00	0	1214	11	0	11	0	20
PDB_00693	-	0.88	0.82	0.93	14	1161	2	0	1	1	3
PDB_00698	-	0.94	0.89	1.00	17	844	0	0	0	0	2
PDB_00702	-	0.80	0.78	0.82	28	4337	8	0	6	2	8
PDB_00705	-	0.86	0.75	1.00	6	247	0	0	0	0	2
PDB_00709	-	-0.02	0.00	0.00	0	766	14	0	14	0	16
PDB_00710	-	-0.02	0.00	0.00	0	768	12	0	12	0	16
PDB_00713	-	-0.01	0.00	0.00	0	1997	19	0	19	0	21
PDB_00716	HDV_ribozyme links to Rfam database...	-0.01	0.00	0.00	0	2680	21	3	18	0	23
PDB_00724	-	-0.01	0.00	0.00	0	2122	23	0	23	0	29
PDB_00725	-	0.73	0.53	1.00	8	587	0	0	0	0	7
PDB_00726	-	0.88	0.78	1.00	7	344	1	0	0	1	2
PDB_00727	-	1.00	1.00	1.00	7	554	3	0	0	3	0
PDB_00728	-	0.97	0.93	1.00	14	482	0	0	0	0	1
PDB_00732	-	-0.01	0.00	0.00	0	2974	29	0	29	0	30
PDB_00733	-	0.23	0.23	0.23	7	2896	24	2	21	1	23
PDB_00734	-	0.83	0.70	1.00	7	224	0	0	0	0	3
PDB_00740	-	0.79	0.64	1.00	7	224	0	0	0	0	4
PDB_00741	Entero_5_CRE links to Rfam database...	0.87	0.76	1.00	13	690	0	0	0	0	4
PDB_00746	-	0.95	0.89	1.00	34	4719	2	0	0	2	4
PDB_00751	-	0.87	0.77	1.00	10	585	2	0	0	2	3
PDB_00754	-	0.20	0.25	0.18	3	1468	16	4	10	2	9
PDB_00767	-	-0.01	0.00	0.00	0	2185	26	8	18	0	20
PDB_00800	-	0.30	0.31	0.30	9	2050	21	1	20	0	20
PDB_00806	-	0.69	0.48	1.00	12	1818	0	0	0	0	13
PDB_00807	-	0.69	0.48	1.00	11	1880	2	0	0	2	12
PDB_00809	-	0.88	0.79	1.00	11	485	0	0	0	0	3
PDB_00810	s2m links to Rfam database...	0.64	0.41	1.00	7	1074	1	0	0	1	10
PDB_00815	-	0.94	0.89	1.00	8	622	3	0	0	3	1
PDB_00823	-	-0.03	0.00	0.00	0	185	5	0	5	0	9
PDB_00828	Purine links to Rfam database...	0.88	0.78	1.00	21	2464	0	0	0	0	6
PDB_00829	Purine links to Rfam database...	0.77	0.71	0.85	17	2258	3	2	1	0	7
PDB_00842	-	0.79	0.63	1.00	5	373	0	0	0	0	3
PDB_00851	-	0.10	0.10	0.13	4	4721	28	0	28	0	37
PDB_00855	-	0.90	0.90	0.90	9	455	2	0	1	1	1
PDB_00857	-	-0.01	0.00	0.00	0	1068	13	0	13	0	15
PDB_00863	-	0.56	0.50	0.64	9	976	5	0	5	0	9
PDB_00865	-	0.96	0.92	1.00	11	340	0	0	0	0	1
PDB_00868	-	-0.01	0.00	0.00	0	1309	17	4	13	0	14
PDB_00870	-	-0.02	0.00	0.00	0	1109	19	0	19	0	16
PDB_00871	-	-0.02	0.00	0.00	0	1106	22	0	22	0	24
PDB_00874	-	0.09	0.10	0.11	2	928	16	2	14	0	18
PDB_00876	HIV_FE links to Rfam database...	0.97	0.95	1.00	19	971	0	0	0	0	1
PDB_00878	-	0.69	0.67	0.73	8	485	3	0	3	0	4
PDB_00883	-	1.00	1.00	1.00	12	618	0	0	0	0	0
PDB_00885	-	0.97	0.94	1.00	17	803	0	0	0	0	1
PDB_00886	-	-0.01	0.00	0.00	0	4148	38	0	38	0	40
PDB_00890	-	-0.02	0.00	0.00	0	690	13	2	11	0	14
PDB_00891	-	-0.02	0.00	0.00	0	928	18	5	13	0	15
PDB_00892	-	-0.01	0.00	0.00	0	2534	22	4	18	0	15
PDB_00918	-	0.75	0.57	1.00	4	321	0	0	0	0	3
PDB_00923	-	1.00	1.00	1.00	6	184	0	0	0	0	0
PDB_00924	-	0.91	0.89	0.94	32	3621	4	0	2	2	4
PDB_00925	-	0.95	0.91	1.00	10	341	1	0	0	1	1
PDB_00928	-	0.66	0.63	0.71	5	293	2	0	2	0	3
PDB_00929	-	-0.02	0.00	0.00	0	762	18	0	18	0	20
PDB_00932	-	0.28	0.31	0.29	4	806	10	1	9	0	9
PDB_00937	-	0.94	0.89	1.00	16	614	0	0	0	0	2
PDB_00943	-	0.27	0.27	0.29	4	1417	10	2	8	0	11
PDB_00945	-	0.84	0.80	0.89	8	456	2	0	1	1	2
PDB_00960	-	-0.03	0.00	0.00	0	394	12	2	10	0	10
PDB_00961	-	1.00	1.00	1.00	10	1760	12	0	0	12	0
PDB_00964	-	1.00	1.00	1.00	9	621	4	0	0	4	0
PDB_00966	-	-0.03	0.00	0.00	0	244	9	2	7	0	7
PDB_00973	-	-0.02	0.00	0.00	0	345	6	2	4	0	8
PDB_00974	-	-0.02	0.00	0.00	0	370	8	2	6	0	9
PDB_00986	-	0.88	0.79	1.00	11	424	0	0	0	0	3
PDB_00987	-	0.79	0.63	1.00	10	551	0	0	0	0	6
PDB_00989	-	0.91	0.83	1.00	30	2973	0	0	0	0	6
PDB_01001	tRNA links to Rfam database...	0.52	0.56	0.50	10	2125	10	3	7	0	8
PDB_01002	tRNA links to Rfam database...	0.48	0.52	0.44	11	2750	14	2	12	0	10
PDB_01008	-	1.00	1.00	1.00	12	583	0	0	0	0	0
PDB_01009	tRNA links to Rfam database...	0.86	0.86	0.86	18	2464	6	0	3	3	3
PDB_01017	-	-0.03	0.00	0.00	0	422	13	0	13	0	14
PDB_01019	-	-0.03	0.00	0.00	0	422	13	0	13	0	14
PDB_01020	Purine links to Rfam database...	0.76	0.70	0.84	16	2259	4	2	1	1	7
PDB_01025	-	1.00	1.00	1.00	9	244	0	0	0	0	0
PDB_01035	-	-0.02	0.00	0.00	0	1517	23	0	23	0	26
PDB_01040	-	0.30	0.30	0.32	6	1109	13	0	13	0	14
PDB_01044	-	1.00	1.00	1.00	16	930	3	0	0	3	0
PDB_01045	-	0.98	0.96	1.00	22	1203	1	0	0	1	1
PDB_01050	UnaL2 links to Rfam database...	0.92	0.85	1.00	11	619	2	0	0	2	2
PDB_01051	Telomerase-cil links to Rfam database...	0.55	0.54	0.58	7	891	6	1	4	1	6
PDB_01053	tRNA links to Rfam database...	1.00	1.00	1.00	16	1362	0	0	0	0	0
PDB_01056	-	0.94	0.89	1.00	8	245	1	0	0	1	1
PDB_01057	-	1.00	1.00	1.00	8	202	0	0	0	0	0
PDB_01059	-	0.49	0.43	0.60	3	226	2	2	0	0	4
PDB_01062	-	0.51	0.50	0.53	8	931	7	0	7	0	8
PDB_01065	-	-0.03	0.00	0.00	0	225	6	0	6	0	10
PDB_01071	-	0.48	0.38	0.63	5	398	3	0	3	0	8
PDB_01073	SAM links to Rfam database...	0.52	0.47	0.57	16	4343	13	2	10	1	18
PDB_01074	-	-0.01	0.00	0.00	0	2746	29	3	26	0	25
PDB_01075	-	0.86	0.75	1.00	24	2391	0	0	0	0	8
PDB_01084	-	1.00	1.00	1.00	7	224	0	0	0	0	0
PDB_01097	-	0.93	0.88	1.00	7	203	0	0	0	0	1
PDB_01099	-	0.85	0.73	1.00	8	268	0	0	0	0	3
PDB_01100	-	0.67	0.50	0.92	11	1473	1	0	1	0	11
PDB_01108	-	1.00	1.00	1.00	9	222	0	0	0	0	0
PDB_01114	TPP links to Rfam database...	0.56	0.48	0.65	13	2830	7	0	7	0	14
PDB_01117	-	0.84	0.71	1.00	12	768	0	0	0	0	5
PDB_01118	-	0.92	0.84	1.00	16	1580	3	0	0	3	3
PDB_01119	-	0.92	0.86	1.00	12	618	0	0	0	0	2
PDB_01126	-	0.48	0.50	0.47	14	3051	18	2	14	2	14
PDB_01127	-	-0.01	0.00	0.00	0	976	16	0	14	2	14
PDB_01128	-	0.65	0.59	0.73	16	2753	6	0	6	0	11
PDB_01130	-	-0.01	0.00	0.00	0	1749	21	4	17	0	20
PDB_01133	-	1.00	1.00	1.00	10	341	0	0	0	0	0
PDB_01135	-	-0.02	0.00	0.00	0	397	9	2	7	0	9
PDB_01137	-	-0.02	0.00	0.00	0	319	6	0	6	0	8
PDB_01138	-	-0.02	0.00	0.00	0	316	9	0	9	0	7
PDB_01145	-	1.00	1.00	1.00	14	766	2	0	0	2	0
PDB_01150	-	0.93	0.88	1.00	7	224	0	0	0	0	1
PDB_01152	HIV_FS2 links to Rfam database...	0.96	0.93	1.00	13	548	0	0	0	0	1
PDB_01154	-	0.90	0.82	1.00	9	397	0	0	0	0	2
PDB_01156	-	-0.01	0.00	0.00	0	3799	29	0	29	0	35
PDB_01160	-	0.34	0.35	0.33	7	2059	14	2	12	0	13
PDB_01162	-	-0.01	0.00	0.00	0	1529	17	0	11	6	9
PDB_01164	-	0.96	0.92	1.00	24	1516	0	0	0	0	2
PDB_01167	-	0.93	0.88	1.00	7	183	0	0	0	0	1
PDB_01168	-	0.86	0.75	1.00	6	184	0	0	0	0	2
PDB_01178	-	0.69	0.64	0.75	9	516	3	0	3	0	5
PDB_01194	-	-0.02	0.00	0.00	0	488	8	0	8	0	15
PDB_01199	-	0.91	0.83	1.00	20	2125	0	0	0	0	4
PDB_01201	-	0.85	0.73	1.00	16	1112	0	0	0	0	6
PDB_01203	-	0.74	0.68	0.81	13	1160	3	2	1	0	6
PDB_01205	-	-0.02	0.00	0.00	0	1015	20	4	16	0	18
PDB_01208	-	0.81	0.75	0.88	15	1159	2	0	2	0	5
PDB_01209	-	0.81	0.75	0.88	15	1159	2	0	2	0	5
PDB_01216	-	0.81	0.75	0.88	15	1159	2	0	2	0	5
PDB_01219	-	-0.02	0.00	0.00	0	932	14	0	14	0	20
PDB_01237	-	1.00	1.00	1.00	8	268	0	0	0	0	0
PDB_01251	-	-0.03	0.00	0.00	0	315	10	0	10	0	13
PDB_01260	-	-0.01	0.00	0.00	0	1809	21	0	21	0	25
PDB_01262	-	0.78	0.63	1.00	5	185	0	0	0	0	3
PDB_01281	-	-0.03	0.00	0.00	0	366	12	0	12	0	14
PDB_01299	-	0.74	0.67	0.83	10	891	2	1	1	0	5
PDB_01313	-	-0.03	0.00	0.00	0	270	6	4	2	0	8
PDB_01325	-	0.91	0.83	1.00	10	266	0	0	0	0	2
PDB_01332	-	0.88	0.78	1.00	7	344	0	0	0	0	2
PDB_01337	-	-0.02	0.00	0.00	0	552	9	1	8	0	11
PDB_01338	-	-0.03	0.00	0.00	0	268	8	2	6	0	8
PDB_01340	-	1.00	1.00	1.00	8	292	0	0	0	0	0
RFA_00389	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	2	0	0	2	1
RFA_00390	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00391	Hammerhead_3 links to Rfam database...	0.80	0.80	0.80	12	1416	5	0	3	2	3
RFA_00396	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	2	0	0	2	1
RFA_00402	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	0	0	0	0	0
RFA_00409	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	2	0	0	2	1
RFA_00416	Hammerhead_3 links to Rfam database...	0.93	0.93	0.93	14	1470	4	0	1	3	1
RFA_00420	-	1.00	1.00	1.00	15	3306	14	0	0	14	0
RFA_00425	Hammerhead_3 links to Rfam database...	0.62	0.67	0.59	10	1636	8	2	5	1	5
RFA_00427	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1471	2	0	0	2	1
RFA_00429	-	1.00	1.00	1.00	9	771	3	0	0	3	0
RFA_00433	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00434	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00436	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00440	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1471	2	0	0	2	1
RFA_00442	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00444	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1526	1	0	0	1	1
RFA_00446	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1471	2	0	0	2	1
RFA_00449	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1471	2	0	0	2	1
RFA_00583	Y_RNA links to Rfam database...	0.93	0.93	0.93	14	4935	17	0	1	16	1
RFA_00584	Y_RNA links to Rfam database...	0.87	0.87	0.87	13	2911	16	0	2	14	2
RFA_00585	Y_RNA links to Rfam database...	0.93	0.93	0.93	14	4836	15	0	1	14	1
RFA_00586	Y_RNA links to Rfam database...	0.97	0.93	1.00	14	3902	8	0	0	8	1
RFA_00587	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4836	14	0	0	14	0
RFA_00588	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4545	13	0	0	13	0
RFA_00589	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4356	19	0	0	19	0
RFA_00594	Y_RNA links to Rfam database...	0.90	0.87	0.93	13	2761	12	0	1	11	2
RFA_00632	HDV_ribozyme links to Rfam database...	0.24	0.25	0.23	7	4065	23	3	20	0	21
RFA_00636	HDV_ribozyme links to Rfam database...	0.50	0.46	0.54	13	3981	13	3	8	2	15
RFA_00642	Vimentin3 links to Rfam database...	0.16	0.17	0.17	3	2908	15	0	15	0	15
RFA_00643	Vimentin3 links to Rfam database...	0.24	0.22	0.27	4	2196	12	2	9	1	14
RFA_00644	Vimentin3 links to Rfam database...	-0.01	0.00	0.00	0	2682	19	3	16	0	18
RFA_00645	Vimentin3 links to Rfam database...	-0.01	0.00	0.00	0	2397	18	5	13	0	18
RFA_00649	Vimentin3 links to Rfam database...	0.31	0.33	0.30	6	2125	14	0	14	0	12
RFA_00651	Vimentin3 links to Rfam database...	0.35	0.33	0.38	6	2064	10	1	9	0	12
RFA_00653	Vimentin3 links to Rfam database...	0.34	0.33	0.35	6	2128	14	2	9	3	12
RFA_00654	Vimentin3 links to Rfam database...	-0.01	0.00	0.00	0	2399	16	2	14	0	18
RFA_00658	Hammerhead_1 links to Rfam database...	0.69	0.64	0.75	9	1116	5	0	3	2	5
RFA_00659	Hammerhead_1 links to Rfam database...	0.30	0.29	0.33	4	1116	10	0	8	2	10
RFA_00664	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	980	10	0	10	0	14
RFA_00667	Hammerhead_1 links to Rfam database...	0.29	0.29	0.31	4	977	10	1	8	1	10
RFA_00668	Hammerhead_1 links to Rfam database...	0.60	0.43	0.86	6	983	1	0	1	0	8
RFA_00672	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	895	9	0	8	1	13
RFA_00673	Hammerhead_1 links to Rfam database...	0.42	0.36	0.50	5	1118	6	0	5	1	9
RFA_00674	Hammerhead_1 links to Rfam database...	0.74	0.71	0.77	10	1115	4	0	3	1	4
RFA_00675	Hammerhead_1 links to Rfam database...	0.29	0.29	0.31	4	977	9	1	8	0	10
RFA_00677	Hammerhead_1 links to Rfam database...	0.59	0.57	0.62	8	977	7	0	5	2	6
RFA_00678	Hammerhead_1 links to Rfam database...	0.80	0.64	1.00	9	937	0	0	0	0	5
RFA_00680	Hammerhead_1 links to Rfam database...	0.74	0.71	0.77	10	1115	6	0	3	3	4
RFA_00683	-	-0.01	0.00	0.00	0	1024	11	0	11	0	14
RFA_00684	Hammerhead_1 links to Rfam database...	0.77	0.71	0.83	10	978	4	0	2	2	4
RFA_00685	Hammerhead_1 links to Rfam database...	0.42	0.36	0.50	5	980	6	0	5	1	9
RFA_00703	Hammerhead_1 links to Rfam database...	0.69	0.64	0.75	9	4266	16	1	2	13	5
RFA_00704	Hammerhead_1 links to Rfam database...	0.36	0.36	0.38	5	977	9	0	8	1	9
RFA_00705	Hammerhead_1 links to Rfam database...	0.74	0.71	0.77	10	1022	4	0	3	1	4
RFA_00706	Hammerhead_1 links to Rfam database...	0.31	0.29	0.36	4	1024	7	0	7	0	10
RFA_00707	Hammerhead_1 links to Rfam database...	0.31	0.29	0.36	4	1024	7	0	7	0	10
RFA_00708	Hammerhead_1 links to Rfam database...	0.59	0.50	0.70	7	1025	4	0	3	1	7
RFA_00709	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	982	9	0	8	1	14
RFA_00710	Hammerhead_1 links to Rfam database...	0.38	0.36	0.42	5	978	8	0	7	1	9
RFA_00711	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	1026	9	0	9	0	14
RFA_00715	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	933	13	0	13	0	14
RFA_00716	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	936	10	0	10	0	14
RFA_00717	Hammerhead_1 links to Rfam database...	0.69	0.64	0.75	9	891	3	0	3	0	5
RFA_00720	-	0.41	0.43	0.40	6	1161	9	2	7	0	8
RFA_00721	-	0.30	0.29	0.33	4	1164	8	3	5	0	10
RFA_00730	s2m links to Rfam database...	0.69	0.67	0.73	8	892	5	1	2	2	4
RFA_00731	s2m links to Rfam database...	0.41	0.42	0.42	5	891	8	3	4	1	7
RFA_00733	s2m links to Rfam database...	0.43	0.42	0.45	5	892	7	1	5	1	7
RFA_00734	s2m links to Rfam database...	0.64	0.42	1.00	5	898	1	0	0	1	7
RFA_00736	s2m links to Rfam database...	0.41	0.42	0.42	5	891	8	3	4	1	7
RFA_00737	s2m links to Rfam database...	0.39	0.42	0.38	5	890	9	2	6	1	7
RFA_00745	s2m links to Rfam database...	0.43	0.42	0.45	5	935	7	1	5	1	7
RFA_00749	s2m links to Rfam database...	0.41	0.42	0.42	5	891	8	3	4	1	7
RFA_00758	s2m links to Rfam database...	0.57	0.33	1.00	4	899	1	0	0	1	8
RFA_00762	s2m links to Rfam database...	0.64	0.67	0.62	8	890	6	1	4	1	4
RFA_00763	s2m links to Rfam database...	0.43	0.42	0.45	5	892	7	1	5	1	7
RFA_00764	s2m links to Rfam database...	0.43	0.42	0.45	5	892	7	1	5	1	7
RFA_00765	s2m links to Rfam database...	0.81	0.67	1.00	8	895	2	0	0	2	4
RFA_00767	Corona_pk3 links to Rfam database...	0.54	0.50	0.60	9	1876	6	2	4	0	9
RFA_00768	Corona_pk3 links to Rfam database...	0.50	0.44	0.57	8	1877	9	0	6	3	10
RFA_00769	Corona_pk3 links to Rfam database...	0.38	0.39	0.39	7	1935	11	2	9	0	11
RFA_00770	Corona_pk3 links to Rfam database...	0.45	0.39	0.54	7	2003	9	0	6	3	11
RFA_00773	Corona_pk3 links to Rfam database...	0.45	0.39	0.54	7	1940	9	0	6	3	11
RFA_00779	Corona_pk3 links to Rfam database...	0.63	0.56	0.71	10	1939	4	3	1	0	8
RFA_00809	RydC links to Rfam database...	0.38	0.38	0.40	6	2130	11	0	9	2	10
SPR_00007	tRNA links to Rfam database...	0.49	0.52	0.46	11	2826	13	2	11	0	10
SPR_00009	tRNA links to Rfam database...	0.26	0.30	0.23	6	2824	20	3	17	0	14
SPR_00010	tRNA links to Rfam database...	0.29	0.33	0.27	7	2824	19	3	16	0	14
SPR_00012	tRNA links to Rfam database...	0.23	0.25	0.23	5	2828	17	3	14	0	15
SPR_00013	tRNA links to Rfam database...	0.45	0.50	0.42	10	2826	15	6	8	1	10
SPR_00016	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00017	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00020	tRNA links to Rfam database...	0.79	0.75	0.83	15	2683	6	0	3	3	5
SPR_00022	tRNA links to Rfam database...	0.32	0.33	0.32	7	2904	15	5	10	0	14
SPR_00023	tRNA links to Rfam database...	0.47	0.52	0.42	11	2824	15	5	10	0	10
SPR_00025	tRNA links to Rfam database...	0.33	0.35	0.32	7	2904	16	1	14	1	13
SPR_00026	tRNA links to Rfam database...	0.32	0.33	0.32	7	2904	15	1	14	0	14
SPR_00027	tRNA links to Rfam database...	0.61	0.57	0.67	12	2908	8	0	6	2	9
SPR_00029	tRNA links to Rfam database...	0.31	0.35	0.29	7	2604	17	7	10	0	13
SPR_00030	-	0.58	0.57	0.60	12	2465	9	2	6	1	9
SPR_00032	tRNA links to Rfam database...	1.00	1.00	1.00	21	2535	2	0	0	2	0
SPR_00033	tRNA links to Rfam database...	1.00	1.00	1.00	21	2607	0	0	0	0	0
SPR_00034	-	1.00	1.00	1.00	21	2464	2	0	0	2	0
SPR_00036	tRNA links to Rfam database...	0.79	0.75	0.83	15	2757	4	2	1	1	5
SPR_00044	tRNA links to Rfam database...	0.32	0.35	0.30	7	2827	16	4	12	0	13
SPR_00045	tRNA links to Rfam database...	1.00	1.00	1.00	22	2828	0	0	0	0	0
SPR_00060	tRNA links to Rfam database...	0.48	0.52	0.44	11	2750	14	0	14	0	10
SPR_00064	tRNA links to Rfam database...	0.54	0.57	0.52	12	2827	11	2	9	0	9
SPR_00065	tRNA links to Rfam database...	0.49	0.52	0.46	11	2826	13	4	9	0	10
SPR_00066	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00068	tRNA links to Rfam database...	0.73	0.76	0.70	16	2827	8	2	5	1	5
SPR_00070	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00074	tRNA links to Rfam database...	0.55	0.35	0.88	7	2842	2	0	1	1	13
SPR_00078	-	0.62	0.67	0.59	10	1874	9	5	2	2	5
SPR_00079	tRNA links to Rfam database...	1.00	1.00	1.00	19	2466	1	0	0	1	0
SPR_00080	tRNA links to Rfam database...	0.61	0.63	0.60	12	2395	8	1	7	0	7
SPR_00086	tRNA links to Rfam database...	0.30	0.33	0.28	7	2825	18	4	14	0	14
SPR_00087	tRNA links to Rfam database...	0.41	0.40	0.42	8	2831	11	4	7	0	12
SPR_00088	tRNA links to Rfam database...	0.41	0.40	0.42	8	2831	11	4	7	0	12
SPR_00089	tRNA links to Rfam database...	0.41	0.40	0.42	8	2831	11	4	7	0	12
SPR_00090	tRNA links to Rfam database...	0.18	0.20	0.18	4	2828	18	4	14	0	16
SPR_00091	tRNA links to Rfam database...	0.41	0.40	0.42	8	2831	11	4	7	0	12
SPR_00095	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00111	tRNA links to Rfam database...	0.54	0.57	0.52	12	2678	11	1	10	0	9
SPR_00112	tRNA links to Rfam database...	0.81	0.81	0.81	17	2680	6	0	4	2	4
SPR_00113	tRNA links to Rfam database...	0.77	0.75	0.79	15	2756	7	0	4	3	5
SPR_00114	tRNA links to Rfam database...	1.00	1.00	1.00	21	2680	1	0	0	1	0
SPR_00115	tRNA links to Rfam database...	0.83	0.81	0.85	17	2681	3	1	2	0	4
SPR_00116	tRNA links to Rfam database...	1.00	1.00	1.00	21	2680	2	0	0	2	0
SPR_00117	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	2	0	0	2	0
SPR_00121	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	3	0	0	3	0
SPR_00124	tRNA links to Rfam database...	0.68	0.68	0.68	15	2534	7	3	4	0	7
SPR_00126	-	0.56	0.55	0.58	11	2061	10	0	8	2	9
SPR_00127	-	0.24	0.28	0.22	5	2392	20	1	17	2	13
SPR_00137	tRNA links to Rfam database...	0.84	0.86	0.82	18	2904	10	0	4	6	3
SPR_00138	tRNA links to Rfam database...	0.79	0.85	0.74	17	2903	7	0	6	1	3
SPR_00139	tRNA links to Rfam database...	0.53	0.52	0.55	11	2906	10	0	9	1	10
SPR_00141	tRNA links to Rfam database...	0.95	0.95	0.95	19	2755	2	0	1	1	1
SPR_00142	-	0.50	0.53	0.48	10	2607	13	3	8	2	9
SPR_00153	tRNA links to Rfam database...	0.32	0.33	0.32	7	2904	15	3	12	0	14
SPR_00155	tRNA links to Rfam database...	0.51	0.57	0.46	12	2900	14	3	11	0	9
SPR_00156	tRNA links to Rfam database...	0.51	0.57	0.46	12	2900	14	5	9	0	9
SPR_00164	tRNA links to Rfam database...	0.50	0.52	0.48	11	2903	13	4	8	1	10
SPR_00166	-	0.37	0.37	0.39	7	2538	11	3	8	0	12
SPR_00167	tRNA links to Rfam database...	0.85	0.85	0.85	17	2536	5	2	1	2	3
SPR_00176	tRNA links to Rfam database...	0.70	0.75	0.65	15	2827	8	4	4	0	5
SPR_00177	tRNA links to Rfam database...	0.50	0.52	0.48	11	2827	12	1	11	0	10
SPR_00178	tRNA links to Rfam database...	0.73	0.76	0.70	16	2827	7	3	4	0	5
SPR_00183	-	0.56	0.55	0.58	11	2831	8	3	5	0	9
SPR_00191	tRNA links to Rfam database...	0.58	0.57	0.60	12	2830	9	0	8	1	9
SPR_00200	tRNA links to Rfam database...	0.74	0.76	0.73	16	2828	6	3	3	0	5
SPR_00209	tRNA links to Rfam database...	0.57	0.63	0.52	12	3547	13	5	6	2	7
SPR_00213	tRNA links to Rfam database...	0.45	0.52	0.39	11	3800	17	6	11	0	10
SPR_00215	tRNA links to Rfam database...	0.53	0.55	0.52	11	3549	14	2	8	4	9
SPR_00218	tRNA links to Rfam database...	0.56	0.60	0.52	12	3718	18	6	5	7	8
SPR_00219	tRNA links to Rfam database...	0.77	0.85	0.71	17	3717	11	2	5	4	3
SPR_00220	tRNA links to Rfam database...	0.23	0.25	0.23	5	3719	21	3	14	4	15
SPR_00221	tRNA links to Rfam database...	0.29	0.33	0.26	7	3714	24	5	15	4	14
SPR_00223	tRNA links to Rfam database...	0.36	0.35	0.37	7	3551	12	6	6	0	13
SPR_00224	tRNA links to Rfam database...	0.73	0.85	0.63	17	3714	10	7	3	0	3
SPR_00225	tRNA links to Rfam database...	0.45	0.52	0.39	11	3713	17	8	9	0	10
SPR_00226	tRNA links to Rfam database...	0.51	0.57	0.46	12	3629	17	5	9	3	9
SPR_00227	tRNA links to Rfam database...	0.29	0.33	0.27	7	3460	22	5	14	3	14
SPR_00228	tRNA links to Rfam database...	0.61	0.60	0.63	12	3809	9	1	6	2	8
SPR_00229	tRNA links to Rfam database...	0.71	0.81	0.63	17	3376	10	5	5	0	4
SPR_00230	tRNA links to Rfam database...	-0.01	0.00	0.00	0	3545	28	7	18	3	21
SPR_00235	tRNA links to Rfam database...	0.27	0.33	0.23	7	3710	24	12	12	0	14
SPR_00236	tRNA links to Rfam database...	0.30	0.35	0.27	7	3544	19	8	11	0	13
SPR_00246	tRNA links to Rfam database...	0.53	0.55	0.52	11	2680	12	1	9	2	9
SPR_00263	tRNA links to Rfam database...	0.75	0.86	0.67	18	3543	9	4	5	0	3
SPR_00273	tRNA links to Rfam database...	0.23	0.24	0.24	5	2829	17	0	16	1	16
SPR_00276	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00279	tRNA links to Rfam database...	0.36	0.33	0.39	7	2908	11	6	5	0	14
SPR_00281	-	0.35	0.41	0.30	7	1993	16	8	8	0	10
SPR_00289	tRNA links to Rfam database...	0.73	0.75	0.71	15	2905	9	2	4	3	5
SPR_00294	tRNA links to Rfam database...	0.53	0.57	0.50	12	2826	12	1	11	0	9
SPR_00295	tRNA links to Rfam database...	0.52	0.52	0.52	11	2754	10	4	6	0	10
SPR_00297	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	0	0	0	0	0
SPR_00298	tRNA links to Rfam database...	0.45	0.45	0.45	9	2755	11	0	11	0	11
SPR_00309	tRNA links to Rfam database...	0.79	0.81	0.77	17	2904	7	2	3	2	4
SPR_00314	tRNA links to Rfam database...	0.74	0.81	0.68	17	2901	11	0	8	3	4
SPR_00315	tRNA links to Rfam database...	0.74	0.81	0.68	17	2901	10	0	8	2	4
SPR_00316	tRNA links to Rfam database...	0.67	0.71	0.63	15	2902	13	3	6	4	6
SPR_00317	tRNA links to Rfam database...	0.56	0.60	0.52	12	2903	11	6	5	0	8
SPR_00318	tRNA links to Rfam database...	0.73	0.76	0.70	16	2903	11	3	4	4	5
SPR_00320	tRNA links to Rfam database...	0.55	0.58	0.52	11	2754	12	6	4	2	8
SPR_00327	tRNA links to Rfam database...	0.51	0.52	0.50	11	2981	11	3	8	0	10
SPR_00329	tRNA links to Rfam database...	0.79	0.81	0.77	17	2828	7	0	5	2	4
SPR_00331	tRNA links to Rfam database...	0.71	0.75	0.68	15	2753	7	2	5	0	5
SPR_00333	tRNA links to Rfam database...	0.55	0.62	0.50	13	2749	13	4	9	0	8
SPR_00339	tRNA links to Rfam database...	0.48	0.52	0.44	11	2750	15	5	9	1	10
SPR_00353	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00356	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	0	0	0	0	0
SPR_00357	tRNA links to Rfam database...	0.71	0.76	0.67	16	2902	8	0	8	0	5
SPR_00358	tRNA links to Rfam database...	0.73	0.80	0.67	16	2902	8	3	5	0	4
SPR_00359	tRNA links to Rfam database...	0.50	0.50	0.50	11	2904	12	0	11	1	11
SPR_00360	tRNA links to Rfam database...	0.31	0.32	0.30	7	2678	16	5	11	0	15
SPR_00362	-	1.00	1.00	1.00	13	1418	5	0	0	5	0
SPR_00363	-	0.69	0.67	0.71	10	1582	6	1	3	2	5
SPR_00364	-	0.52	0.55	0.50	11	2189	11	3	8	0	9
SPR_00365	-	0.22	0.23	0.22	5	2533	19	3	15	1	17
SPR_00366	-	0.81	0.75	0.88	15	2539	2	1	1	0	5
SPR_00367	-	0.69	0.73	0.67	16	2461	8	2	6	0	6
SPR_00369	tRNA links to Rfam database...	0.52	0.57	0.48	12	2750	14	3	10	1	9
SPR_00370	tRNA links to Rfam database...	0.52	0.57	0.48	12	2750	14	3	10	1	9
SPR_00373	tRNA links to Rfam database...	0.31	0.33	0.29	7	2826	17	7	10	0	14
SPR_00374	tRNA links to Rfam database...	0.30	0.33	0.28	7	2825	18	7	11	0	14
SPR_00385	tRNA links to Rfam database...	0.73	0.75	0.71	15	4257	15	0	6	9	5
SPR_00386	tRNA links to Rfam database...	0.31	0.35	0.28	7	4161	23	8	10	5	13
SPR_00388	tRNA links to Rfam database...	0.52	0.57	0.48	12	4161	19	6	7	6	9
SPR_00389	tRNA links to Rfam database...	0.79	0.85	0.74	17	3982	11	1	5	5	3
SPR_00390	tRNA links to Rfam database...	0.22	0.24	0.21	5	4254	27	0	19	8	16
SPR_00391	tRNA links to Rfam database...	0.25	0.29	0.23	6	3802	20	8	12	0	15
SPR_00393	tRNA links to Rfam database...	0.55	0.55	0.55	11	3808	14	1	8	5	9
SPR_00394	tRNA links to Rfam database...	0.57	0.57	0.57	12	3634	14	5	4	5	9
SPR_00395	tRNA links to Rfam database...	0.50	0.57	0.44	12	3978	16	7	8	1	9
SPR_00398	-	-0.01	0.00	0.00	0	2192	21	3	16	2	13
SPR_00399	-	0.61	0.75	0.50	12	2461	12	8	4	0	4
SPR_00402	tRNA links to Rfam database...	0.62	0.62	0.62	13	2535	8	1	7	0	8
SPR_00412	tRNA links to Rfam database...	-0.01	0.00	0.00	0	3632	27	3	20	4	21
SPR_00414	tRNA links to Rfam database...	0.90	0.86	0.95	18	3551	6	0	1	5	3
SPR_00415	tRNA links to Rfam database...	0.31	0.33	0.30	7	3547	20	5	11	4	14
SPR_00416	tRNA links to Rfam database...	0.18	0.19	0.18	4	3548	22	2	16	4	17
SPR_00417	tRNA links to Rfam database...	0.95	0.95	0.95	21	3548	6	0	1	5	1
SPR_00418	tRNA links to Rfam database...	0.95	0.95	0.95	21	3548	6	0	1	5	1
SPR_00426	tRNA links to Rfam database...	1.00	1.00	1.00	21	2982	4	0	0	4	0
SPR_00434	tRNA links to Rfam database...	0.32	0.33	0.32	7	2828	15	3	12	0	14
SPR_00435	tRNA links to Rfam database...	0.65	0.67	0.64	14	2828	8	0	8	0	7
SPR_00436	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	2	0	0	2	0
SPR_00437	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	2	0	0	2	0
SPR_00438	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	0	0	0	0	0
SPR_00439	tRNA links to Rfam database...	0.31	0.35	0.28	7	2676	18	6	12	0	13
SPR_00445	tRNA links to Rfam database...	0.77	0.85	0.71	17	2979	8	1	6	1	3
SPR_00452	tRNA links to Rfam database...	0.73	0.76	0.70	16	2827	7	3	4	0	5
SPR_00455	tRNA links to Rfam database...	0.29	0.33	0.27	7	2824	19	3	16	0	14
SPR_00456	tRNA links to Rfam database...	0.55	0.57	0.55	12	2828	13	1	9	3	9
SPR_00458	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	0	0	0	0	0
SPR_00459	tRNA links to Rfam database...	0.55	0.55	0.55	11	2755	9	2	7	0	9
SPR_00461	tRNA links to Rfam database...	0.95	0.95	0.95	18	2537	2	0	1	1	1
SPR_00462	tRNA links to Rfam database...	0.72	0.74	0.70	14	2395	7	3	3	1	5
SPR_00467	tRNA links to Rfam database...	0.55	0.55	0.55	11	2830	10	1	8	1	9
SPR_00476	tRNA links to Rfam database...	0.50	0.52	0.48	11	2752	12	3	9	0	10
SPR_00478	tRNA links to Rfam database...	0.53	0.52	0.55	11	2755	10	0	9	1	10
SPR_00479	tRNA links to Rfam database...	0.51	0.52	0.50	11	2828	12	1	10	1	10
SPR_00481	tRNA links to Rfam database...	0.38	0.33	0.44	7	2759	10	0	9	1	14
SPR_00482	tRNA links to Rfam database...	0.80	0.76	0.84	16	2682	3	2	1	0	5
SPR_00483	tRNA links to Rfam database...	0.73	0.71	0.75	15	2830	6	0	5	1	6
SPR_00487	tRNA links to Rfam database...	1.00	1.00	1.00	22	2679	0	0	0	0	0
SPR_00489	tRNA links to Rfam database...	0.48	0.48	0.50	10	2681	12	4	6	2	11
SPR_00493	tRNA links to Rfam database...	0.95	0.95	0.95	21	2753	1	0	1	0	1
SPR_00496	tRNA links to Rfam database...	0.48	0.52	0.44	11	2750	14	3	11	0	10
SPR_00497	tRNA links to Rfam database...	0.50	0.52	0.48	11	2752	12	3	9	0	10
SPR_00498	tRNA links to Rfam database...	0.53	0.60	0.48	12	2978	13	3	10	0	8
SPR_00502	tRNA links to Rfam database...	0.56	0.57	0.55	12	2904	10	2	8	0	9
SPR_00504	tRNA links to Rfam database...	0.50	0.55	0.46	11	2826	13	3	10	0	9
SPR_00505	tRNA links to Rfam database...	0.52	0.55	0.50	11	2904	11	3	8	0	9
SPR_00506	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	2	0	0	2	0
SPR_00509	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	2	0	0	2	0
SPR_00512	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	2	0	0	2	0
SPR_00513	tRNA links to Rfam database...	0.51	0.50	0.53	10	2907	9	0	9	0	10
SPR_00517	tRNA links to Rfam database...	0.25	0.25	0.26	5	2831	15	2	12	1	15
SPR_00518	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00519	tRNA links to Rfam database...	0.80	0.76	0.84	16	2537	4	0	3	1	5
SPR_00520	tRNA links to Rfam database...	0.48	0.50	0.47	9	2537	10	4	6	0	9
SPR_00533	tRNA links to Rfam database...	0.60	0.62	0.59	13	2753	9	3	6	0	8
SPR_00541	tRNA links to Rfam database...	0.31	0.33	0.29	7	3462	20	0	17	3	14
SPR_00542	tRNA links to Rfam database...	0.30	0.33	0.28	7	3545	21	2	16	3	14
SPR_00548	tRNA links to Rfam database...	0.54	0.62	0.48	13	3376	14	6	8	0	8
SPR_00550	tRNA links to Rfam database...	0.31	0.32	0.30	7	3805	18	0	16	2	15
SPR_00552	tRNA links to Rfam database...	0.21	0.21	0.22	4	2683	14	2	12	0	15
SPR_00557	tRNA links to Rfam database...	0.50	0.52	0.48	11	2827	12	2	10	0	10
SPR_00561	tRNA links to Rfam database...	0.52	0.52	0.52	11	2829	11	0	10	1	10
SPR_00590	tRNA links to Rfam database...	0.31	0.35	0.28	7	2978	18	7	11	0	13
SPR_00593	tRNA links to Rfam database...	0.35	0.37	0.33	7	2754	14	3	11	0	12
SPR_00595	tRNA links to Rfam database...	0.78	0.76	0.80	16	2755	4	2	2	0	5
SPR_00598	tRNA links to Rfam database...	0.82	0.76	0.89	16	2985	3	0	2	1	5
SPR_00610	tRNA links to Rfam database...	0.76	0.76	0.76	16	2535	6	3	2	1	5
SPR_00620	tRNA links to Rfam database...	0.52	0.57	0.48	12	2978	14	5	8	1	9
SPR_00629	-	0.93	0.93	0.93	14	1876	8	0	1	7	1
SPR_00632	tRNA links to Rfam database...	0.60	0.60	0.60	12	2536	8	1	7	0	8
SPR_00633	tRNA links to Rfam database...	0.50	0.55	0.46	11	2532	13	2	11	0	9
SPR_00721	tRNA links to Rfam database...	0.52	0.57	0.48	12	2901	15	1	12	2	9
SPR_00722	tRNA links to Rfam database...	0.76	0.80	0.73	16	2904	6	4	2	0	4
SPR_00750	tRNA links to Rfam database...	0.65	0.58	0.73	11	2541	6	1	3	2	8
SPR_00758	tRNA links to Rfam database...	0.29	0.33	0.27	7	2977	20	7	12	1	14
SPR_00760	tRNA links to Rfam database...	0.48	0.52	0.44	11	3545	18	4	10	4	10
SPR_00768	-	0.65	0.67	0.63	12	2061	9	3	4	2	6
SPR_00777	tRNA links to Rfam database...	0.51	0.55	0.48	11	2605	12	5	7	0	9
SPR_00810	tRNA links to Rfam database...	0.58	0.63	0.55	12	3548	16	3	7	6	7
SPR_00816	tRNA links to Rfam database...	0.32	0.35	0.29	7	3462	20	5	12	3	13
SPR_00832	-	0.64	0.67	0.63	10	1637	8	2	4	2	5
SPR_00867	tRNA links to Rfam database...	0.48	0.52	0.44	11	2901	16	4	10	2	10
SPR_00868	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	3	0	0	3	0
SPR_00882	tRNA links to Rfam database...	0.45	0.50	0.42	10	2604	14	5	9	0	10
SPR_00912	tRNA links to Rfam database...	0.49	0.52	0.46	11	2979	16	3	10	3	10
SPR_00913	tRNA links to Rfam database...	0.49	0.52	0.46	11	2979	14	2	11	1	10
SPR_00932	tRNA links to Rfam database...	0.34	0.38	0.32	8	2825	18	4	13	1	13
SPR_00938	-	-0.01	0.00	0.00	0	1635	18	5	13	0	15
SPR_00943	tRNA links to Rfam database...	0.78	0.80	0.76	16	2535	6	3	2	1	4
SPR_00957	tRNA links to Rfam database...	0.83	0.81	0.85	17	2983	4	0	3	1	4
SPR_01040	tRNA links to Rfam database...	0.60	0.57	0.63	12	2756	8	0	7	1	9
SPR_01051	tRNA links to Rfam database...	0.31	0.33	0.29	7	2532	17	4	13	0	14
SPR_01088	tRNA links to Rfam database...	0.51	0.52	0.50	11	2904	13	2	9	2	10
SPR_01095	tRNA links to Rfam database...	0.76	0.76	0.76	16	2829	6	0	5	1	5
SPR_01103	-	0.60	0.67	0.56	10	1752	10	6	2	2	5
SPR_01106	tRNA links to Rfam database...	1.00	1.00	1.00	21	2535	2	0	0	2	0
SPR_01117	tRNA links to Rfam database...	0.31	0.33	0.30	7	2980	16	2	14	0	14
SPR_01143	tRNA links to Rfam database...	0.48	0.33	0.70	7	2546	3	0	3	0	14
SPR_01157	tRNA links to Rfam database...	0.73	0.76	0.70	16	2752	8	0	7	1	5
SRP_00005	-	0.15	0.17	0.15	4	3978	24	6	17	1	20
SRP_00008	Bacteria_small_SRP links to Rfam database...	0.66	0.68	0.65	17	2900	11	0	9	2	8
SRP_00042	Bacteria_small_SRP links to Rfam database...	0.50	0.48	0.52	12	3982	12	2	9	1	13
SRP_00046	Bacteria_small_SRP links to Rfam database...	0.56	0.56	0.56	18	4721	15	1	13	1	14
SRP_00083	-	0.82	0.73	0.92	22	4827	3	0	2	1	8
SRP_00094	Bacteria_small_SRP links to Rfam database...	0.68	0.71	0.65	17	4069	10	1	8	1	7
SRP_00095	Bacteria_small_SRP links to Rfam database...	0.25	0.28	0.24	7	3976	22	2	20	0	18
SRP_00101	-	0.81	0.84	0.78	21	3543	8	0	6	2	4
SRP_00107	Bacteria_small_SRP links to Rfam database...	0.12	0.16	0.10	3	3625	29	6	21	2	16
SRP_00121	Bacteria_small_SRP links to Rfam database...	0.45	0.48	0.43	12	4250	16	4	12	0	13
SRP_00132	Bacteria_small_SRP links to Rfam database...	0.66	0.69	0.65	20	4820	14	0	11	3	9
SRP_00137	Bacteria_small_SRP links to Rfam database...	0.36	0.40	0.33	10	4156	22	3	17	2	15
SRP_00138	-	0.51	0.48	0.54	13	3981	13	2	9	2	14
SRP_00139	-	-0.01	0.00	0.00	0	2132	13	4	9	0	12
SRP_00161	Bacteria_small_SRP links to Rfam database...	0.44	0.45	0.43	10	2827	13	3	10	0	12
SRP_00162	Bacteria_small_SRP links to Rfam database...	0.58	0.61	0.56	14	2901	13	2	9	2	9
SRP_00163	Bacteria_small_SRP links to Rfam database...	0.45	0.46	0.44	12	3459	16	4	11	1	14
SRP_00170	Bacteria_small_SRP links to Rfam database...	0.34	0.36	0.33	9	4068	19	0	18	1	16
SRP_00194	Bacteria_small_SRP links to Rfam database...	0.73	0.76	0.70	16	3217	10	0	7	3	5
SRP_00196	-	0.45	0.46	0.43	13	4626	21	1	16	4	15
SRP_00209	Bacteria_small_SRP links to Rfam database...	0.35	0.37	0.33	10	4626	20	3	17	0	17
SRP_00213	Bacteria_small_SRP links to Rfam database...	0.37	0.40	0.36	10	4158	18	1	17	0	15
SRP_00214	-	0.73	0.75	0.72	18	3056	10	0	7	3	6
SRP_00215	Bacteria_small_SRP links to Rfam database...	0.41	0.40	0.43	10	3217	14	1	12	1	15
SRP_00216	Bacteria_small_SRP links to Rfam database...	0.85	0.85	0.85	23	3376	5	1	3	1	4
SRP_00217	Bacteria_small_SRP links to Rfam database...	0.87	0.83	0.91	20	3299	3	0	2	1	4
SRP_00219	Bacteria_small_SRP links to Rfam database...	0.89	0.87	0.91	20	3299	3	0	2	1	3
SRP_00221	-	0.38	0.38	0.38	8	3382	14	2	11	1	13
SRP_00222	Bacteria_small_SRP links to Rfam database...	0.84	0.84	0.84	21	3056	5	1	3	1	4
SRP_00223	-	0.70	0.70	0.70	14	3383	8	0	6	2	6
SRP_00256	-	0.16	0.18	0.14	4	4250	24	6	18	0	18
SRP_00266	Bacteria_small_SRP links to Rfam database...	0.32	0.34	0.30	10	4623	23	4	19	0	19
SRP_00268	Bacteria_small_SRP links to Rfam database...	0.48	0.48	0.48	13	4159	15	1	13	1	14
SRP_00270	Bacteria_small_SRP links to Rfam database...	0.43	0.45	0.41	14	4622	20	2	18	0	17
SRP_00271	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	3215	25	3	22	0	24
SRP_00284	-	0.89	0.86	0.93	25	3714	3	0	2	1	4
SRP_00285	Bacteria_small_SRP links to Rfam database...	0.77	0.73	0.81	22	3714	6	0	5	1	8
SRP_00310	Bacteria_small_SRP links to Rfam database...	0.40	0.43	0.38	10	2900	16	1	15	0	13
SRP_00312	Bacteria_small_SRP links to Rfam database...	0.35	0.37	0.34	10	4157	19	0	19	0	17
SRP_00315	Bacteria_small_SRP links to Rfam database...	0.82	0.83	0.83	19	2903	5	0	4	1	4
SRP_00318	Bacteria_small_SRP links to Rfam database...	0.82	0.83	0.83	19	2980	5	0	4	1	4
SRP_00325	Bacteria_small_SRP links to Rfam database...	0.73	0.73	0.73	24	4338	9	1	8	0	9
SRP_00341	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	4726	27	5	22	0	31
SRP_00342	Bacteria_small_SRP links to Rfam database...	0.57	0.60	0.56	15	3978	17	1	11	5	10
SRP_00350	Bacteria_small_SRP links to Rfam database...	0.36	0.33	0.39	9	3893	14	2	12	0	18
SRP_00363	Bacteria_small_SRP links to Rfam database...	0.92	0.93	0.90	28	4722	6	0	3	3	2
SRP_00365	Bacteria_small_SRP links to Rfam database...	0.39	0.37	0.42	10	3379	15	2	12	1	17
SRP_00383	Bacteria_small_SRP links to Rfam database...	0.12	0.13	0.13	3	3216	21	4	17	0	21

^top

Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.

Table of contents:

Overview

Performance plots

Performance of Cylofold - scored higher in this pairwise comparison

1. Total counts & total scores for Cylofold

2. Individual counts for Cylofold [ download as .csv ]

Performance of Alterna - scored lower in this pairwise comparison

1. Total counts & total scores for Alterna

2. Individual counts for Alterna [ download as .csv ]