CompaRNA - on-line benchmarks of RNA structure prediction methods

Laboratory of Structural Bioinformatics @ Adam Mickiewicz University in Poznan

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Overview

Metric	Cylofold		Vsfold4
MCC	0.577	>	0.515
Average MCC ± 95% Confidence Intervals	0.601 ± 0.023	>	0.544 ± 0.025
Sensitivity	0.554	>	0.472
Positive Predictive Value	0.608	>	0.570
Total TP	9025	>	7690
Total TN	2101223	<	2102571
Total FP	6401	>	6383
Total FP CONTRA	1037	>	670
Total FP INCONS	4786	<	5140
Total FP COMP	578	>	573
Total FN	7276	<	8611
P-value	3.56938820447e-08

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Performance plots

Comparison of performance of Cylofold and Vsfold4. Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data (individual counts for Cylofold and Vsfold4).
Average Matthews Correlation Coefficients (MCC) with 95% confidence intervals (CIs) were plotted for different RNA families, for which at least 3 members were present in the benchmarking dataset. 'n' denotes the number of MCCs used to calculate the average and CI. See tables below for raw data (individual counts for Cylofold and Vsfold4).
Comparison of average Matthews Correlation Coefficients (MCCs) for Cylofold and Vsfold4. The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data (individual counts for Cylofold and Vsfold4).

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Performance of Cylofold - scored higher in this pairwise comparison

1. Total counts & total scores for Cylofold

Total Base Pair Counts
Total TP	9025
Total TN	2101223
Total FP	6401
Total FP CONTRA	1037
Total FP INCONS	4786
Total FP COMP	578
Total FN	7276

Total Scores
MCC	0.577
Average MCC ± 95% Confidence Intervals	0.601 ± 0.023
Sensitivity	0.554
Positive Predictive Value	0.608
Nr of predictions	796

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2. Individual counts for Cylofold [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
CRW_00548	5S_rRNA links to Rfam database...	0.08	0.08	0.08	3	7345	33	2	31	0	35
CRW_00552	5S_rRNA links to Rfam database...	0.39	0.36	0.42	14	7107	22	2	17	3	25
CRW_00555	5S_rRNA links to Rfam database...	0.59	0.50	0.69	20	7597	9	1	8	0	20
CRW_00567	5S_rRNA links to Rfam database...	0.47	0.45	0.50	18	7467	20	4	14	2	22
CRW_00570	5S_rRNA links to Rfam database...	0.83	0.81	0.86	30	6868	6	0	5	1	7
CRW_00573	5S_rRNA links to Rfam database...	0.25	0.25	0.26	10	7101	29	0	29	0	30
CRW_01484	5S_rRNA links to Rfam database...	0.26	0.26	0.27	10	7466	27	3	24	0	29
CRW_01485	5S_rRNA links to Rfam database...	0.40	0.38	0.42	15	7467	21	2	19	0	24
CRW_01489	5S_rRNA links to Rfam database...	0.00	0.00	0.00	0	7468	35	2	33	0	39
CRW_01491	5S_rRNA links to Rfam database...	0.00	0.00	0.00	0	8351	34	3	31	0	43
CRW_01492	5S_rRNA links to Rfam database...	0.67	0.64	0.71	27	7588	14	0	11	3	15
CRW_01494	5S_rRNA links to Rfam database...	0.18	0.15	0.21	6	7112	23	0	22	1	34
CRW_01497	5S_rRNA links to Rfam database...	0.58	0.50	0.67	20	7110	10	0	10	0	20
CRW_01498	5S_rRNA links to Rfam database...	0.30	0.28	0.32	12	8091	26	0	25	1	31
CRW_01499	5S_rRNA links to Rfam database...	0.44	0.39	0.50	16	7969	17	1	15	1	25
CRW_01500	5S_rRNA links to Rfam database...	0.17	0.16	0.19	6	7718	26	2	24	0	32
CRW_01502	5S_rRNA links to Rfam database...	0.89	0.83	0.95	38	8345	3	0	2	1	8
CRW_01504	5S_rRNA links to Rfam database...	0.63	0.60	0.67	26	7836	15	1	12	2	17
CRW_01507	5S_rRNA links to Rfam database...	0.37	0.32	0.45	13	7474	19	2	14	3	28
CRW_01521	5S_rRNA links to Rfam database...	0.78	0.67	0.92	24	6877	6	0	2	4	12
CRW_01532	5S_rRNA links to Rfam database...	0.59	0.54	0.65	20	7109	13	3	8	2	17
CRW_01533	5S_rRNA links to Rfam database...	0.70	0.65	0.75	24	7108	10	2	6	2	13
CRW_01535	5S_rRNA links to Rfam database...	0.40	0.38	0.42	14	7107	21	2	17	2	23
CRW_01536	5S_rRNA links to Rfam database...	0.42	0.41	0.44	15	6987	20	3	16	1	22
CRW_01537	5S_rRNA links to Rfam database...	0.10	0.08	0.14	3	7119	18	3	15	0	34
CRW_01539	5S_rRNA links to Rfam database...	0.47	0.46	0.49	17	7105	21	1	17	3	20
CRW_01540	5S_rRNA links to Rfam database...	0.34	0.35	0.33	13	7101	26	3	23	0	24
CRW_01541	5S_rRNA links to Rfam database...	0.61	0.59	0.63	22	7105	14	1	12	1	15
CRW_01542	5S_rRNA links to Rfam database...	0.39	0.38	0.40	14	7105	21	2	19	0	23
CRW_01548	5S_rRNA links to Rfam database...	0.47	0.46	0.49	17	6986	19	3	15	1	20
CRW_01556	5S_rRNA links to Rfam database...	0.58	0.57	0.60	21	7105	15	2	12	1	16
CRW_01557	5S_rRNA links to Rfam database...	0.48	0.46	0.50	17	7106	19	2	15	2	20
CRW_01559	5S_rRNA links to Rfam database...	0.81	0.73	0.90	27	7230	7	0	3	4	10
CRW_01562	5S_rRNA links to Rfam database...	0.13	0.14	0.13	5	7102	33	8	25	0	32
CRW_01563	5S_rRNA links to Rfam database...	0.40	0.32	0.50	12	6879	13	0	12	1	25
CRW_01566	5S_rRNA links to Rfam database...	0.00	0.00	0.00	0	7110	30	2	28	0	37
CRW_01568	5S_rRNA links to Rfam database...	0.49	0.49	0.50	18	7104	18	2	16	0	19
CRW_01569	5S_rRNA links to Rfam database...	0.54	0.51	0.58	19	7107	15	4	10	1	18
CRW_01570	5S_rRNA links to Rfam database...	0.46	0.43	0.48	16	7107	19	1	16	2	21
CRW_01572	5S_rRNA links to Rfam database...	0.47	0.43	0.52	16	6990	18	1	14	3	21
CRW_01573	5S_rRNA links to Rfam database...	0.22	0.22	0.22	8	7224	28	1	27	0	29
CRW_01578	5S_rRNA links to Rfam database...	0.38	0.38	0.38	14	7103	23	3	20	0	23
CRW_01580	5S_rRNA links to Rfam database...	0.37	0.35	0.39	13	7107	20	3	17	0	24
CRW_01581	5S_rRNA links to Rfam database...	0.40	0.35	0.46	13	7112	16	0	15	1	24
CRW_01583	5S_rRNA links to Rfam database...	0.18	0.16	0.20	6	7110	24	1	23	0	31
CRW_01584	5S_rRNA links to Rfam database...	0.23	0.24	0.23	9	7101	30	3	27	0	28
CRW_01590	5S_rRNA links to Rfam database...	0.08	0.08	0.09	3	7105	32	4	28	0	34
CRW_01593	5S_rRNA links to Rfam database...	0.26	0.24	0.29	9	7109	22	5	17	0	28
CRW_01599	5S_rRNA links to Rfam database...	0.21	0.22	0.21	8	7102	30	2	28	0	29
CRW_01603	5S_rRNA links to Rfam database...	0.50	0.46	0.55	17	7109	14	2	12	0	20
CRW_01605	5S_rRNA links to Rfam database...	0.44	0.41	0.48	15	7109	16	2	14	0	22
CRW_01606	5S_rRNA links to Rfam database...	0.36	0.35	0.38	13	7106	22	6	15	1	24
CRW_01608	5S_rRNA links to Rfam database...	0.53	0.46	0.61	17	8357	13	0	11	2	20
CRW_01613	5S_rRNA links to Rfam database...	0.55	0.51	0.59	19	6989	13	3	10	0	18
CRW_01616	5S_rRNA links to Rfam database...	0.48	0.49	0.47	18	7102	20	5	15	0	19
CRW_01617	5S_rRNA links to Rfam database...	0.25	0.24	0.27	9	7107	24	4	20	0	28
CRW_01620	5S_rRNA links to Rfam database...	0.67	0.62	0.72	23	6989	10	2	7	1	14
CRW_01621	5S_rRNA links to Rfam database...	0.38	0.35	0.42	13	7109	18	0	18	0	24
CRW_01623	5S_rRNA links to Rfam database...	0.44	0.41	0.48	15	7109	17	0	16	1	22
NDB_00014	-	0.89	0.80	1.00	8	182	0	0	0	0	2
NDB_00015	-	0.38	0.40	0.40	4	266	6	0	6	0	6
NDB_00016	-	0.91	0.83	1.00	10	266	0	0	0	0	2
NDB_00047	-	0.91	0.83	1.00	10	266	0	0	0	0	2
NDB_00048	-	-0.02	0.00	0.00	0	1514	26	0	26	0	28
NDB_00049	-	0.92	0.85	1.00	11	314	0	0	0	0	2
NDB_00051	tRNA links to Rfam database...	0.76	0.71	0.81	17	2754	4	4	0	0	7
PDB_00001	-	-0.03	0.00	0.00	0	270	6	0	6	0	12
PDB_00002	-	0.71	0.63	0.83	5	204	1	0	1	0	3
PDB_00003	-	0.81	0.67	1.00	8	343	0	0	0	0	4
PDB_00004	-	0.79	0.63	1.00	12	808	0	0	0	0	7
PDB_00005	Tymo_tRNA-like links to Rfam database...	0.78	0.79	0.79	11	932	3	0	3	0	3
PDB_00006	-	1.00	1.00	1.00	14	689	0	0	0	0	0
PDB_00011	-	0.91	0.83	1.00	10	266	0	0	0	0	2
PDB_00012	mir-TAR links to Rfam database...	1.00	1.00	1.00	7	399	3	0	0	3	0
PDB_00013	-	1.00	1.00	1.00	10	396	1	0	0	1	0
PDB_00017	-	0.77	0.60	1.00	9	694	0	0	0	0	6
PDB_00018	-	0.90	0.90	0.90	18	1015	2	2	0	0	2
PDB_00019	-	0.74	0.75	0.75	6	245	2	0	2	0	2
PDB_00020	-	0.79	0.75	0.83	15	762	3	0	3	0	5
PDB_00021	-	1.00	1.00	1.00	8	182	0	0	0	0	0
PDB_00022	-	0.74	0.56	1.00	5	248	0	0	0	0	4
PDB_00032	-	0.77	0.60	1.00	9	894	1	0	0	1	6
PDB_00034	-	0.57	0.33	1.00	4	374	0	0	0	0	8
PDB_00035	-	0.81	0.67	1.00	6	204	0	0	0	0	3
PDB_00036	-	-0.01	0.00	0.00	0	3464	22	1	21	0	27
PDB_00039	-	0.18	0.16	0.23	7	5325	25	0	24	1	38
PDB_00040	-	0.83	0.70	1.00	7	269	0	0	0	0	3
PDB_00041	-	1.00	1.00	1.00	12	618	0	0	0	0	0
PDB_00043	-	0.66	0.62	0.73	8	424	3	0	3	0	5
PDB_00048	-	1.00	1.00	1.00	9	291	1	0	0	1	0
PDB_00049	-	0.83	0.70	1.00	7	224	0	0	0	0	3
PDB_00053	-	1.00	1.00	1.00	11	424	0	0	0	0	0
PDB_00054	-	-0.04	0.00	0.00	0	184	6	0	6	0	10
PDB_00056	-	0.93	0.88	1.00	14	616	0	0	0	0	2
PDB_00057	-	1.00	1.00	1.00	10	341	1	0	0	1	0
PDB_00065	-	0.77	0.60	1.00	6	400	1	0	0	1	4
PDB_00070	tRNA links to Rfam database...	0.59	0.58	0.61	14	2827	9	1	8	0	10
PDB_00074	-	-0.03	0.00	0.00	0	370	8	0	8	0	12
PDB_00081	-	0.94	0.89	1.00	8	182	0	0	0	0	1
PDB_00088	-	0.86	0.75	1.00	9	426	1	0	0	1	3
PDB_00096	-	-0.03	0.00	0.00	0	319	6	0	6	0	12
PDB_00098	-	0.81	0.67	1.00	4	227	0	0	0	0	2
PDB_00102	-	0.93	0.88	1.00	7	224	0	0	0	0	1
PDB_00104	-	0.36	0.38	0.38	6	614	10	0	10	0	10
PDB_00107	-	0.95	0.91	1.00	10	455	1	0	0	1	1
PDB_00108	-	0.84	0.71	1.00	5	205	0	0	0	0	2
PDB_00113	-	0.94	0.89	1.00	8	223	0	0	0	0	1
PDB_00115	-	0.50	0.50	0.53	8	546	7	0	7	0	8
PDB_00116	-	0.70	0.50	1.00	3	228	0	0	0	0	3
PDB_00119	-	0.95	0.90	1.00	9	244	0	0	0	0	1
PDB_00120	-	0.95	0.90	1.00	9	222	0	0	0	0	1
PDB_00121	-	0.95	0.90	1.00	9	222	0	0	0	0	1
PDB_00122	-	0.91	0.83	1.00	10	290	0	0	0	0	2
PDB_00123	-	0.94	0.94	0.94	34	4150	2	2	0	0	2
PDB_00124	-	0.86	0.90	0.82	9	485	2	2	0	0	1
PDB_00125	-	-0.03	0.00	0.00	0	225	6	0	6	0	10
PDB_00128	-	0.78	0.79	0.79	11	482	3	0	3	0	3
PDB_00130	-	1.00	1.00	1.00	6	270	0	0	0	0	0
PDB_00132	-	0.63	0.58	0.70	7	425	3	0	3	0	5
PDB_00134	-	0.94	1.00	0.89	8	369	1	1	0	0	0
PDB_00136	-	0.85	0.77	0.95	20	2394	1	0	1	0	6
PDB_00137	-	0.87	0.77	1.00	10	396	0	0	0	0	3
PDB_00138	-	0.94	1.00	0.89	8	369	1	1	0	0	0
PDB_00142	-	0.91	0.83	1.00	10	425	0	0	0	0	2
PDB_00149	-	0.89	0.80	1.00	12	691	0	0	0	0	3
PDB_00150	-	0.95	0.90	1.00	9	291	1	0	0	1	1
PDB_00152	-	0.93	0.88	1.00	7	183	0	0	0	0	1
PDB_00153	-	0.84	0.80	0.89	8	244	1	0	1	0	2
PDB_00155	-	0.86	0.75	1.00	6	319	0	0	0	0	2
PDB_00157	-	0.52	0.45	0.62	13	3300	13	0	8	5	16
PDB_00158	-	0.77	0.60	1.00	12	849	0	0	0	0	8
PDB_00159	-	0.67	0.45	1.00	5	346	0	0	0	0	6
PDB_00160	-	0.94	0.89	1.00	8	268	0	0	0	0	1
PDB_00168	-	0.81	0.67	1.00	4	296	1	0	0	1	2
PDB_00169	-	0.83	0.70	1.00	7	224	0	0	0	0	3
PDB_00170	-	0.93	0.88	1.00	14	616	0	0	0	0	2
PDB_00171	-	0.70	0.50	1.00	6	429	0	0	0	0	6
PDB_00174	-	0.27	0.27	0.30	6	1015	14	0	14	0	16
PDB_00175	-	-0.01	0.00	0.00	0	4534	26	0	26	0	36
PDB_00178	-	0.79	0.64	1.00	7	521	0	0	0	0	4
PDB_00182	-	0.88	0.78	1.00	7	246	0	0	0	0	2
PDB_00183	-	0.21	0.17	0.27	4	1470	11	0	11	0	19
PDB_00184	-	0.87	0.77	1.00	10	551	0	0	0	0	3
PDB_00185	-	0.34	0.32	0.38	9	2902	16	0	15	1	19
PDB_00190	-	0.95	0.90	1.00	9	222	0	0	0	0	1
PDB_00192	-	0.21	0.14	0.33	5	3225	10	0	10	0	31
PDB_00196	-	0.28	0.29	0.31	8	1570	18	0	18	0	20
PDB_00197	-	1.00	1.00	1.00	7	293	0	0	0	0	0
PDB_00200	-	0.81	0.67	1.00	6	204	0	0	0	0	3
PDB_00201	-	0.77	0.60	1.00	6	319	0	0	0	0	4
PDB_00202	-	0.96	0.93	1.00	13	548	1	0	0	1	1
PDB_00203	-	0.96	0.92	1.00	12	549	0	0	0	0	1
PDB_00205	-	0.84	0.71	1.00	10	425	0	0	0	0	4
PDB_00206	-	0.86	0.75	1.00	6	270	0	0	0	0	2
PDB_00207	-	0.92	0.86	1.00	12	366	0	0	0	0	2
PDB_00209	-	0.96	1.00	0.92	11	549	1	1	0	0	0
PDB_00211	-	0.89	0.80	1.00	8	182	0	0	0	0	2
PDB_00213	Gammaretro_CES links to Rfam database...	0.66	0.61	0.71	25	5015	10	0	10	0	16
PDB_00214	-	0.73	0.55	1.00	6	400	0	0	0	0	5
PDB_00215	-	-0.02	0.00	0.00	0	1106	22	0	22	0	24
PDB_00219	-	1.00	1.00	1.00	7	203	0	0	0	0	0
PDB_00221	-	0.88	0.78	1.00	7	246	0	0	0	0	2
PDB_00224	-	0.93	0.88	1.00	7	183	0	0	0	0	1
PDB_00229	tRNA links to Rfam database...	0.96	0.91	1.00	21	2754	0	0	0	0	2
PDB_00234	-	-0.04	0.00	0.00	0	268	8	0	8	0	12
PDB_00236	-	0.45	0.42	0.50	10	1108	10	0	10	0	14
PDB_00237	-	0.88	0.78	1.00	7	371	1	0	0	1	2
PDB_00239	-	0.29	0.22	0.40	4	810	6	0	6	0	14
PDB_00243	-	1.00	1.00	1.00	12	618	0	0	0	0	0
PDB_00248	-	0.91	0.83	1.00	10	266	0	0	0	0	2
PDB_00249	-	0.00	0.00	0.00	0	276	0	0	0	0	11
PDB_00250	-	0.76	0.68	0.85	17	1750	3	2	1	0	8
PDB_00252	-	0.97	0.93	1.00	14	766	2	0	0	2	1
PDB_00254	-	-0.04	0.00	0.00	0	266	10	0	10	0	12
PDB_00256	-	0.49	0.75	0.33	3	316	7	6	0	1	1
PDB_00257	-	0.79	0.64	1.00	7	344	0	0	0	0	4
PDB_00258	-	1.00	1.00	1.00	8	245	0	0	0	0	0
PDB_00261	-	-0.03	0.00	0.00	0	486	10	0	10	0	16
PDB_00262	-	0.25	0.25	0.27	6	1106	16	0	16	0	18
PDB_00264	-	-0.01	0.00	0.00	0	1114	14	0	14	0	18
PDB_00267	-	-0.03	0.00	0.00	0	366	12	0	12	0	14
PDB_00286	-	-0.03	0.00	0.00	0	184	8	0	6	2	6
PDB_00293	-	0.20	0.25	0.18	3	1111	14	8	6	0	9
PDB_00312	-	1.00	1.00	1.00	9	426	0	0	0	0	0
PDB_00313	tRNA links to Rfam database...	0.82	0.84	0.80	16	2681	6	2	2	2	3
PDB_00317	-	1.00	1.00	1.00	10	368	0	0	0	0	0
PDB_00326	-	0.80	0.64	1.00	18	3723	0	0	0	0	10
PDB_00327	tRNA links to Rfam database...	0.57	0.52	0.63	12	3062	7	0	7	0	11
PDB_00339	-	0.75	0.56	1.00	9	657	0	0	0	0	7
PDB_00341	-	0.38	0.31	0.50	5	693	5	0	5	0	11
PDB_00342	-	-0.02	0.00	0.00	0	762	18	0	18	0	10
PDB_00343	-	0.82	0.71	0.94	15	1580	2	0	1	1	6
PDB_00347	-	0.80	0.65	1.00	13	1163	0	0	0	0	7
PDB_00349	-	0.24	0.29	0.22	4	928	14	4	10	0	10
PDB_00351	-	0.54	0.50	0.60	6	551	4	0	4	0	6
PDB_00352	-	0.90	0.95	0.86	18	1204	3	2	1	0	1
PDB_00357	-	0.73	0.80	0.67	8	768	4	4	0	0	2
PDB_00362	tRNA links to Rfam database...	0.98	0.95	1.00	21	2829	0	0	0	0	1
PDB_00365	-	0.96	0.93	1.00	13	422	0	0	0	0	1
PDB_00371	-	0.81	0.67	1.00	10	551	0	0	0	0	5
PDB_00377	-	0.91	0.92	0.92	11	516	1	0	1	0	1
PDB_00378	-	0.88	0.79	1.00	11	692	0	0	0	0	3
PDB_00392	tRNA links to Rfam database...	0.51	0.48	0.56	10	2832	8	2	6	0	11
PDB_00400	-	-0.01	0.00	0.00	0	3141	19	0	19	0	34
PDB_00402	tRNA links to Rfam database...	0.96	0.91	1.00	21	2754	0	0	0	0	2
PDB_00411	-	0.81	0.67	1.00	10	585	0	0	0	0	5
PDB_00420	-	0.63	0.60	0.67	6	487	6	0	3	3	4
PDB_00425	tRNA links to Rfam database...	0.78	0.73	0.84	16	2682	3	0	3	0	6
PDB_00430	tRNA links to Rfam database...	0.73	0.72	0.75	18	3216	6	3	3	0	7
PDB_00431	tRNA links to Rfam database...	0.88	0.95	0.83	19	2188	5	4	0	1	1
PDB_00433	-	0.84	0.71	1.00	24	6646	0	0	0	0	10
PDB_00454	-	0.84	0.81	0.87	26	2671	4	0	4	0	6
PDB_00474	tRNA links to Rfam database...	0.96	0.91	1.00	21	2680	0	0	0	0	2
PDB_00481	-	0.64	0.54	0.78	14	1873	4	0	4	0	12
PDB_00513	-	1.00	1.00	1.00	7	224	0	0	0	0	0
PDB_00522	-	0.82	0.72	0.93	13	1114	1	0	1	0	5
PDB_00526	-	-0.01	0.00	0.00	0	296	4	1	3	0	3
PDB_00527	-	-0.01	0.00	0.00	0	296	4	1	3	0	5
PDB_00537	-	0.66	0.44	1.00	4	402	0	0	0	0	5
PDB_00553	mir-TAR links to Rfam database...	1.00	1.00	1.00	11	454	0	0	0	0	0
PDB_00565	-	0.53	0.46	0.61	23	8090	16	1	14	1	27
PDB_00570	-	0.28	0.23	0.36	5	2264	9	1	8	0	17
PDB_00571	tRNA links to Rfam database...	0.87	0.80	0.95	20	3300	1	1	0	0	5
PDB_00573	-	0.63	0.53	0.75	18	6646	10	0	6	4	16
PDB_00584	-	0.84	0.71	1.00	12	1473	0	0	0	0	5
PDB_00599	-	0.96	0.93	1.00	13	548	0	0	0	0	1
PDB_00603	-	0.95	0.90	1.00	9	244	0	0	0	0	1
PDB_00611	-	-0.01	0.00	0.00	0	772	8	1	7	0	11
PDB_00617	-	0.95	0.90	1.00	9	267	0	0	0	0	1
PDB_00627	-	0.63	0.53	0.75	9	1641	5	0	3	2	8
PDB_00629	-	0.39	0.35	0.44	8	1635	10	0	10	0	15
PDB_00637	-	0.88	0.90	0.86	19	2324	3	2	1	0	2
PDB_00648	-	0.92	0.92	0.92	12	848	1	0	1	0	1
PDB_00667	tRNA links to Rfam database...	0.80	0.82	0.78	18	2827	6	4	1	1	4
PDB_00681	-	-0.01	0.00	0.00	0	1256	19	0	19	0	19
PDB_00682	-	-0.03	0.00	0.00	0	482	14	0	14	0	16
PDB_00686	-	0.94	0.89	1.00	17	686	0	0	0	0	2
PDB_00692	-	-0.01	0.00	0.00	0	1216	9	0	9	0	20
PDB_00693	-	0.94	0.88	1.00	15	1161	0	0	0	0	2
PDB_00698	-	0.94	0.89	1.00	17	844	0	0	0	0	2
PDB_00702	-	0.78	0.67	0.92	24	4345	4	0	2	2	12
PDB_00705	-	0.86	0.75	1.00	6	247	0	0	0	0	2
PDB_00709	-	0.18	0.19	0.20	3	765	12	0	12	0	13
PDB_00710	-	0.00	0.00	0.00	0	780	0	0	0	0	16
PDB_00713	-	0.24	0.24	0.26	5	1997	14	0	14	0	16
PDB_00716	HDV_ribozyme links to Rfam database...	0.68	0.70	0.67	16	2677	9	0	8	1	7
PDB_00724	-	0.52	0.48	0.58	14	2121	10	0	10	0	15
PDB_00725	-	0.89	0.80	1.00	12	583	0	0	0	0	3
PDB_00726	-	0.88	0.78	1.00	7	344	1	0	0	1	2
PDB_00727	-	1.00	1.00	1.00	7	554	3	0	0	3	0
PDB_00728	-	0.97	0.93	1.00	14	482	0	0	0	0	1
PDB_00732	-	0.30	0.30	0.32	9	2975	20	0	19	1	21
PDB_00733	-	0.22	0.23	0.23	7	2895	25	1	23	1	23
PDB_00734	-	0.83	0.70	1.00	7	224	0	0	0	0	3
PDB_00740	-	0.59	0.36	1.00	4	227	0	0	0	0	7
PDB_00741	Entero_5_CRE links to Rfam database...	0.87	0.76	1.00	13	690	0	0	0	0	4
PDB_00746	-	0.89	0.84	0.94	32	4719	4	0	2	2	6
PDB_00750	-	0.52	0.47	0.59	23	11896	16	0	16	0	26
PDB_00751	-	0.73	0.54	1.00	7	588	2	0	0	2	6
PDB_00754	-	0.89	1.00	0.80	12	1470	6	3	0	3	0
PDB_00767	-	0.91	1.00	0.83	20	2187	8	4	0	4	0
PDB_00800	-	0.30	0.31	0.30	9	2050	21	1	20	0	20
PDB_00806	-	0.39	0.32	0.50	8	1814	8	0	8	0	17
PDB_00807	-	0.69	0.48	1.00	11	1880	1	0	0	1	12
PDB_00809	-	-0.02	0.00	0.00	0	487	9	0	9	0	14
PDB_00810	s2m links to Rfam database...	0.51	0.41	0.64	7	1070	4	2	2	0	10
PDB_00815	-	0.58	0.56	0.63	5	622	4	0	3	1	4
PDB_00823	-	-0.04	0.00	0.00	0	183	7	0	7	0	9
PDB_00828	Purine links to Rfam database...	0.88	0.78	1.00	21	2464	0	0	0	0	6
PDB_00829	Purine links to Rfam database...	0.43	0.42	0.45	10	2256	12	0	12	0	14
PDB_00842	-	1.00	1.00	1.00	8	370	0	0	0	0	0
PDB_00851	-	0.45	0.39	0.53	16	4723	14	0	14	0	25
PDB_00855	-	0.71	0.60	0.86	6	458	2	0	1	1	4
PDB_00857	-	1.00	1.00	1.00	15	1066	0	0	0	0	0
PDB_00863	-	0.50	0.44	0.57	8	976	6	0	6	0	10
PDB_00865	-	0.96	0.92	1.00	11	340	0	0	0	0	1
PDB_00868	-	1.00	1.00	1.00	14	1312	0	0	0	0	0
PDB_00870	-	-0.01	0.00	0.00	0	1113	15	0	15	0	16
PDB_00871	-	-0.02	0.00	0.00	0	1106	22	0	22	0	24
PDB_00874	-	0.21	0.20	0.25	4	930	12	0	12	0	16
PDB_00876	HIV_FE links to Rfam database...	0.97	0.95	1.00	19	971	0	0	0	0	1
PDB_00878	-	0.96	0.92	1.00	11	485	0	0	0	0	1
PDB_00879	-	0.42	0.38	0.47	15	5018	18	0	17	1	24
PDB_00883	-	1.00	1.00	1.00	12	618	0	0	0	0	0
PDB_00885	-	0.97	0.94	1.00	17	803	0	0	0	0	1
PDB_00886	-	0.34	0.35	0.35	14	4146	26	0	26	0	26
PDB_00890	-	0.71	0.71	0.71	10	689	4	2	2	0	4
PDB_00891	-	0.80	0.93	0.70	14	926	6	6	0	0	1
PDB_00892	-	0.00	0.00	0.00	0	2556	0	0	0	0	15
PDB_00918	-	0.93	1.00	0.88	7	317	1	1	0	0	0
PDB_00923	-	1.00	1.00	1.00	6	184	0	0	0	0	0
PDB_00924	-	0.97	0.94	1.00	34	3621	0	0	0	0	2
PDB_00925	-	0.95	0.91	1.00	10	341	1	0	0	1	1
PDB_00928	-	0.79	0.63	1.00	5	295	0	0	0	0	3
PDB_00929	-	-0.02	0.00	0.00	0	762	18	0	18	0	20
PDB_00932	-	0.88	0.77	1.00	10	810	0	0	0	0	3
PDB_00937	-	0.94	0.89	1.00	16	614	0	0	0	0	2
PDB_00943	-	-0.01	0.00	0.00	0	1425	8	0	6	2	15
PDB_00945	-	0.95	0.90	1.00	9	456	0	0	0	0	1
PDB_00960	-	-0.03	0.00	0.00	0	394	12	2	10	0	10
PDB_00961	-	1.00	1.00	1.00	10	1760	4	0	0	4	0
PDB_00964	-	0.88	0.78	1.00	7	623	2	0	0	2	2
PDB_00966	-	-0.03	0.00	0.00	0	244	9	2	7	0	7
PDB_00973	-	0.00	0.00	0.00	0	351	0	0	0	0	8
PDB_00974	-	0.00	0.00	0.00	0	378	0	0	0	0	9
PDB_00986	-	0.88	0.79	1.00	11	424	0	0	0	0	3
PDB_00987	-	0.38	0.38	0.43	6	547	8	0	8	0	10
PDB_00989	-	0.17	0.17	0.19	6	2972	25	0	25	0	30
PDB_01001	tRNA links to Rfam database...	0.83	0.83	0.83	15	2127	3	3	0	0	3
PDB_01002	tRNA links to Rfam database...	0.88	0.90	0.86	19	2753	5	3	0	2	2
PDB_01008	-	1.00	1.00	1.00	12	583	0	0	0	0	0
PDB_01009	tRNA links to Rfam database...	0.90	0.90	0.90	19	2464	5	0	2	3	2
PDB_01017	-	-0.03	0.00	0.00	0	422	13	0	13	0	14
PDB_01019	-	-0.03	0.00	0.00	0	422	13	0	13	0	14
PDB_01020	Purine links to Rfam database...	0.86	0.74	1.00	17	2261	1	0	0	1	6
PDB_01025	-	1.00	1.00	1.00	9	244	0	0	0	0	0
PDB_01035	-	0.96	0.92	1.00	24	1516	0	0	0	0	2
PDB_01040	-	1.00	1.00	1.00	20	1108	0	0	0	0	0
PDB_01044	-	1.00	1.00	1.00	16	930	3	0	0	3	0
PDB_01045	-	0.98	0.96	1.00	22	1203	1	0	0	1	1
PDB_01050	UnaL2 links to Rfam database...	0.92	0.85	1.00	11	619	2	0	0	2	2
PDB_01051	Telomerase-cil links to Rfam database...	0.79	0.69	0.90	9	893	2	0	1	1	4
PDB_01053	tRNA links to Rfam database...	1.00	1.00	1.00	16	1362	0	0	0	0	0
PDB_01056	-	0.74	0.56	1.00	5	248	0	0	0	0	4
PDB_01057	-	1.00	1.00	1.00	8	202	0	0	0	0	0
PDB_01059	-	0.88	1.00	0.78	7	222	2	2	0	0	0
PDB_01062	-	0.42	0.38	0.50	6	934	6	0	6	0	10
PDB_01065	-	-0.03	0.00	0.00	0	225	6	0	6	0	10
PDB_01071	-	0.78	0.62	1.00	8	398	0	0	0	0	5
PDB_01073	SAM links to Rfam database...	0.75	0.65	0.88	22	4346	4	2	1	1	12
PDB_01074	-	0.61	0.60	0.63	15	2751	10	2	7	1	10
PDB_01075	-	0.20	0.19	0.23	6	2389	20	0	20	0	26
PDB_01084	-	1.00	1.00	1.00	7	224	0	0	0	0	0
PDB_01097	-	0.93	0.88	1.00	7	203	0	0	0	0	1
PDB_01099	-	0.85	0.73	1.00	8	268	0	0	0	0	3
PDB_01100	-	-0.01	0.00	0.00	0	1467	18	0	18	0	22
PDB_01108	-	1.00	1.00	1.00	9	222	0	0	0	0	0
PDB_01114	TPP links to Rfam database...	0.38	0.33	0.45	9	2830	11	0	11	0	18
PDB_01117	-	-0.02	0.00	0.00	0	769	11	0	11	0	17
PDB_01118	-	0.92	0.84	1.00	16	1580	1	0	0	1	3
PDB_01119	-	0.80	0.86	0.75	12	614	4	2	2	0	2
PDB_01126	-	0.48	0.50	0.47	14	3051	18	2	14	2	14
PDB_01127	-	-0.01	0.00	0.00	0	976	16	0	14	2	14
PDB_01128	-	0.49	0.48	0.50	13	2749	13	3	10	0	14
PDB_01130	-	0.23	0.20	0.29	4	1756	10	2	8	0	16
PDB_01133	-	1.00	1.00	1.00	10	341	0	0	0	0	0
PDB_01135	-	-0.02	0.00	0.00	0	397	9	2	7	0	9
PDB_01137	-	-0.02	0.00	0.00	0	321	4	0	4	0	8
PDB_01138	-	-0.02	0.00	0.00	0	316	9	0	9	0	7
PDB_01145	-	1.00	1.00	1.00	14	766	2	0	0	2	0
PDB_01150	-	0.93	0.88	1.00	7	224	0	0	0	0	1
PDB_01152	HIV_FS2 links to Rfam database...	0.88	0.79	1.00	11	550	0	0	0	0	3
PDB_01154	-	0.90	0.82	1.00	9	397	0	0	0	0	2
PDB_01156	-	0.39	0.34	0.46	12	3802	14	0	14	0	23
PDB_01160	-	0.68	0.65	0.72	13	2062	5	1	4	0	7
PDB_01162	-	0.55	0.56	0.56	5	1531	7	0	4	3	4
PDB_01164	-	0.96	0.92	1.00	24	1516	0	0	0	0	2
PDB_01167	-	0.70	0.50	1.00	4	186	0	0	0	0	4
PDB_01168	-	0.86	0.75	1.00	6	184	0	0	0	0	2
PDB_01178	-	0.84	0.71	1.00	10	518	0	0	0	0	4
PDB_01194	-	0.97	0.93	1.00	14	482	0	0	0	0	1
PDB_01199	-	-0.01	0.00	0.00	0	2130	15	2	13	0	24
PDB_01201	-	0.95	0.91	1.00	20	1108	0	0	0	0	2
PDB_01203	-	0.74	0.68	0.81	13	1160	3	2	1	0	6
PDB_01205	-	-0.02	0.00	0.00	0	1015	20	4	16	0	18
PDB_01208	-	0.80	0.65	1.00	13	1163	0	0	0	0	7
PDB_01209	-	0.80	0.65	1.00	13	1163	0	0	0	0	7
PDB_01216	-	0.80	0.65	1.00	13	1163	0	0	0	0	7
PDB_01219	-	0.22	0.20	0.27	4	931	11	0	11	0	16
PDB_01237	-	1.00	1.00	1.00	8	268	0	0	0	0	0
PDB_01251	-	-0.03	0.00	0.00	0	317	8	0	8	0	13
PDB_01260	-	0.41	0.36	0.47	9	1811	10	0	10	0	16
PDB_01262	-	-0.03	0.00	0.00	0	185	5	0	5	0	8
PDB_01281	-	-0.03	0.00	0.00	0	366	12	0	12	0	14
PDB_01299	-	0.90	0.87	0.93	13	889	1	1	0	0	2
PDB_01313	-	-0.03	0.00	0.00	0	270	6	4	2	0	8
PDB_01325	-	0.91	0.83	1.00	10	266	0	0	0	0	2
PDB_01332	-	0.88	0.78	1.00	7	344	0	0	0	0	2
PDB_01337	-	0.33	0.27	0.43	3	554	4	2	2	0	8
PDB_01338	-	-0.02	0.00	0.00	0	272	4	0	4	0	8
PDB_01340	-	1.00	1.00	1.00	8	292	0	0	0	0	0
RFA_00389	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00390	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00391	Hammerhead_3 links to Rfam database...	0.93	0.87	1.00	13	1418	2	0	0	2	2
RFA_00396	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	2	0	0	2	1
RFA_00402	Hammerhead_3 links to Rfam database...	0.40	0.33	0.50	5	1421	5	0	5	0	10
RFA_00409	Hammerhead_3 links to Rfam database...	0.77	0.60	1.00	9	1422	1	0	0	1	6
RFA_00416	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1470	3	0	0	3	0
RFA_00420	-	1.00	1.00	1.00	15	3306	11	0	0	11	0
RFA_00425	Hammerhead_3 links to Rfam database...	0.93	0.87	1.00	13	1640	4	0	0	4	2
RFA_00427	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1471	2	0	0	2	1
RFA_00429	-	1.00	1.00	1.00	9	771	2	0	0	2	0
RFA_00433	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00434	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00436	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00440	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1470	2	0	0	2	0
RFA_00442	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00444	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1525	1	0	0	1	0
RFA_00446	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1471	2	0	0	2	1
RFA_00449	Hammerhead_3 links to Rfam database...	0.67	0.60	0.75	9	1473	5	0	3	2	6
RFA_00582	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	5980	17	0	0	17	0
RFA_00583	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4935	6	0	0	6	0
RFA_00584	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	2911	8	0	0	8	0
RFA_00585	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4836	11	0	0	11	0
RFA_00586	Y_RNA links to Rfam database...	0.71	0.80	0.63	12	3897	8	4	3	1	3
RFA_00587	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4836	8	0	0	8	0
RFA_00588	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4545	7	0	0	7	0
RFA_00589	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4356	11	0	0	11	0
RFA_00590	-	0.89	0.80	1.00	12	5344	9	0	0	9	3
RFA_00594	Y_RNA links to Rfam database...	0.93	0.87	1.00	13	2762	5	0	0	5	2
RFA_00596	Y_RNA links to Rfam database...	0.26	0.33	0.20	5	5970	28	8	12	8	10
RFA_00632	HDV_ribozyme links to Rfam database...	0.54	0.54	0.56	15	4068	12	2	10	0	13
RFA_00636	HDV_ribozyme links to Rfam database...	0.78	0.82	0.74	23	3974	8	7	1	0	5
RFA_00642	Vimentin3 links to Rfam database...	0.18	0.17	0.21	3	2912	11	1	10	0	15
RFA_00643	Vimentin3 links to Rfam database...	0.23	0.22	0.25	4	2195	12	1	11	0	14
RFA_00644	Vimentin3 links to Rfam database...	-0.01	0.00	0.00	0	2684	17	3	14	0	18
RFA_00645	Vimentin3 links to Rfam database...	-0.01	0.00	0.00	0	2397	18	4	14	0	18
RFA_00649	Vimentin3 links to Rfam database...	-0.01	0.00	0.00	0	2137	8	0	8	0	18
RFA_00651	Vimentin3 links to Rfam database...	0.30	0.28	0.33	5	2065	10	5	5	0	13
RFA_00653	Vimentin3 links to Rfam database...	-0.01	0.00	0.00	0	2130	15	3	12	0	18
RFA_00654	Vimentin3 links to Rfam database...	0.26	0.22	0.31	4	2402	10	1	8	1	14
RFA_00658	Hammerhead_1 links to Rfam database...	0.40	0.29	0.57	4	1121	5	0	3	2	10
RFA_00659	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	1118	12	0	10	2	14
RFA_00664	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	980	11	0	10	1	14
RFA_00667	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	981	10	1	8	1	14
RFA_00668	Hammerhead_1 links to Rfam database...	0.50	0.43	0.60	6	980	4	0	4	0	8
RFA_00672	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	895	9	0	8	1	13
RFA_00673	Hammerhead_1 links to Rfam database...	0.47	0.36	0.63	5	1120	4	0	3	1	9
RFA_00674	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	1117	11	0	11	0	14
RFA_00675	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	981	9	1	8	0	14
RFA_00677	Hammerhead_1 links to Rfam database...	0.69	0.64	0.75	9	978	5	0	3	2	5
RFA_00678	Hammerhead_1 links to Rfam database...	0.53	0.29	1.00	4	942	0	0	0	0	10
RFA_00680	Hammerhead_1 links to Rfam database...	0.74	0.71	0.77	10	1115	6	0	3	3	4
RFA_00683	-	-0.01	0.00	0.00	0	1026	9	0	9	0	14
RFA_00684	Hammerhead_1 links to Rfam database...	0.84	0.71	1.00	10	980	1	0	0	1	4
RFA_00685	Hammerhead_1 links to Rfam database...	0.47	0.36	0.63	5	982	3	0	3	0	9
RFA_00695	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	7010	23	4	7	12	14
RFA_00703	Hammerhead_1 links to Rfam database...	0.30	0.36	0.25	5	4258	19	4	11	4	9
RFA_00704	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	983	8	0	7	1	14
RFA_00705	Hammerhead_1 links to Rfam database...	0.84	0.71	1.00	10	1025	0	0	0	0	4
RFA_00706	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	1026	9	0	9	0	14
RFA_00707	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	1030	5	0	5	0	14
RFA_00708	Hammerhead_1 links to Rfam database...	0.40	0.29	0.57	4	1028	3	0	3	0	10
RFA_00709	Hammerhead_1 links to Rfam database...	0.28	0.21	0.38	3	982	6	0	5	1	11
RFA_00710	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	981	9	0	9	0	14
RFA_00711	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	1026	9	0	9	0	14
RFA_00715	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	939	7	0	7	0	14
RFA_00716	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	939	7	0	7	0	14
RFA_00717	Hammerhead_1 links to Rfam database...	0.35	0.29	0.44	4	894	5	0	5	0	10
RFA_00720	-	0.84	0.71	1.00	10	1166	0	0	0	0	4
RFA_00721	-	0.40	0.29	0.57	4	1169	3	0	3	0	10
RFA_00730	s2m links to Rfam database...	0.51	0.42	0.63	5	895	4	1	2	1	7
RFA_00731	s2m links to Rfam database...	0.48	0.42	0.56	5	894	5	1	3	1	7
RFA_00733	s2m links to Rfam database...	0.51	0.42	0.63	5	895	4	0	3	1	7
RFA_00734	s2m links to Rfam database...	0.18	0.17	0.22	2	894	8	0	7	1	10
RFA_00736	s2m links to Rfam database...	0.48	0.42	0.56	5	894	5	1	3	1	7
RFA_00737	s2m links to Rfam database...	0.43	0.42	0.45	5	892	7	0	6	1	7
RFA_00745	s2m links to Rfam database...	-0.01	0.00	0.00	0	938	8	1	7	0	12
RFA_00749	s2m links to Rfam database...	0.48	0.42	0.56	5	894	5	1	3	1	7
RFA_00758	s2m links to Rfam database...	-0.01	0.00	0.00	0	898	5	0	5	0	12
RFA_00762	s2m links to Rfam database...	0.31	0.33	0.31	4	890	9	2	7	0	8
RFA_00763	s2m links to Rfam database...	0.43	0.42	0.45	5	892	7	0	6	1	7
RFA_00764	s2m links to Rfam database...	0.51	0.42	0.63	5	895	4	0	3	1	7
RFA_00765	s2m links to Rfam database...	0.51	0.42	0.63	5	895	4	0	3	1	7
RFA_00767	Corona_pk3 links to Rfam database...	1.00	1.00	1.00	18	1873	4	0	0	4	0
RFA_00768	Corona_pk3 links to Rfam database...	1.00	1.00	1.00	18	1873	0	0	0	0	0
RFA_00769	Corona_pk3 links to Rfam database...	0.97	1.00	0.95	18	1934	1	1	0	0	0
RFA_00770	Corona_pk3 links to Rfam database...	0.88	0.78	1.00	14	2002	3	0	0	3	4
RFA_00773	Corona_pk3 links to Rfam database...	0.97	1.00	0.95	18	1934	4	1	0	3	0
RFA_00779	Corona_pk3 links to Rfam database...	0.97	0.94	1.00	17	1936	0	0	0	0	1
RFA_00781	Gammaretro_CES links to Rfam database...	0.64	0.66	0.64	21	5017	12	2	10	0	11
RFA_00786	Gammaretro_CES links to Rfam database...	0.33	0.31	0.36	10	5022	18	1	17	0	22
RFA_00791	Gammaretro_CES links to Rfam database...	0.51	0.44	0.61	14	5128	9	0	9	0	18
RFA_00792	Gammaretro_CES links to Rfam database...	0.78	0.72	0.85	23	5023	4	2	2	0	9
RFA_00801	Gammaretro_CES links to Rfam database...	0.82	0.75	0.89	24	5023	4	0	3	1	8
RFA_00809	RydC links to Rfam database...	0.79	0.81	0.76	13	2128	4	0	4	0	3
SPR_00007	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00009	tRNA links to Rfam database...	0.93	1.00	0.87	20	2827	3	3	0	0	0
SPR_00010	tRNA links to Rfam database...	0.93	1.00	0.88	21	2826	3	3	0	0	0
SPR_00012	tRNA links to Rfam database...	-0.01	0.00	0.00	0	2832	18	0	18	0	20
SPR_00013	tRNA links to Rfam database...	0.97	0.95	1.00	19	2831	0	0	0	0	1
SPR_00016	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00017	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00020	tRNA links to Rfam database...	0.85	0.85	0.85	17	2681	5	0	3	2	3
SPR_00022	tRNA links to Rfam database...	0.81	0.81	0.81	17	2905	4	2	2	0	4
SPR_00023	tRNA links to Rfam database...	0.73	0.86	0.62	18	2821	11	5	6	0	3
SPR_00025	tRNA links to Rfam database...	0.91	1.00	0.83	20	2902	5	4	0	1	0
SPR_00026	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00027	tRNA links to Rfam database...	0.92	1.00	0.84	21	2901	4	4	0	0	0
SPR_00029	tRNA links to Rfam database...	-0.01	0.00	0.00	0	2612	16	0	16	0	20
SPR_00030	-	0.31	0.24	0.42	5	2473	7	0	7	0	16
SPR_00032	tRNA links to Rfam database...	1.00	1.00	1.00	21	2535	1	0	0	1	0
SPR_00033	tRNA links to Rfam database...	0.21	0.19	0.25	4	2612	12	3	9	0	17
SPR_00034	-	0.90	0.81	1.00	17	2468	1	0	0	1	4
SPR_00036	tRNA links to Rfam database...	0.73	0.80	0.67	16	2751	9	8	0	1	4
SPR_00044	tRNA links to Rfam database...	0.43	0.50	0.38	10	2824	16	4	12	0	10
SPR_00045	tRNA links to Rfam database...	0.95	0.95	0.95	21	2828	1	0	1	0	1
SPR_00060	tRNA links to Rfam database...	0.31	0.33	0.30	7	2752	16	6	10	0	14
SPR_00064	tRNA links to Rfam database...	0.52	0.57	0.48	12	2825	13	2	11	0	9
SPR_00065	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00066	tRNA links to Rfam database...	0.93	1.00	0.88	21	2826	3	3	0	0	0
SPR_00068	tRNA links to Rfam database...	0.93	1.00	0.88	21	2826	3	3	0	0	0
SPR_00070	tRNA links to Rfam database...	0.57	0.57	0.57	12	2829	9	5	4	0	9
SPR_00074	tRNA links to Rfam database...	0.97	0.95	1.00	19	2831	1	0	0	1	1
SPR_00078	-	0.82	0.67	1.00	10	1881	2	0	0	2	5
SPR_00079	tRNA links to Rfam database...	0.83	0.68	1.00	13	2472	1	0	0	1	6
SPR_00080	tRNA links to Rfam database...	0.83	0.68	1.00	13	2402	0	0	0	0	6
SPR_00086	tRNA links to Rfam database...	0.55	0.57	0.55	12	2828	10	4	6	0	9
SPR_00087	tRNA links to Rfam database...	0.95	0.90	1.00	18	2832	0	0	0	0	2
SPR_00088	tRNA links to Rfam database...	0.88	0.90	0.86	18	2829	3	3	0	0	2
SPR_00089	tRNA links to Rfam database...	0.19	0.20	0.19	4	2829	17	6	11	0	16
SPR_00090	tRNA links to Rfam database...	0.95	0.90	1.00	18	2832	0	0	0	0	2
SPR_00091	tRNA links to Rfam database...	0.95	0.90	1.00	18	2832	0	0	0	0	2
SPR_00095	tRNA links to Rfam database...	0.55	0.57	0.55	12	2828	10	4	6	0	9
SPR_00111	tRNA links to Rfam database...	0.93	1.00	0.88	21	2677	4	3	0	1	0
SPR_00112	tRNA links to Rfam database...	1.00	1.00	1.00	21	2680	2	0	0	2	0
SPR_00113	tRNA links to Rfam database...	0.92	0.85	1.00	17	2758	1	0	0	1	3
SPR_00114	tRNA links to Rfam database...	1.00	1.00	1.00	21	2680	1	0	0	1	0
SPR_00115	tRNA links to Rfam database...	0.73	0.76	0.70	16	2678	7	4	3	0	5
SPR_00116	tRNA links to Rfam database...	1.00	1.00	1.00	21	2680	2	0	0	2	0
SPR_00117	tRNA links to Rfam database...	0.63	0.71	0.56	15	2823	12	5	7	0	6
SPR_00121	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	3	0	0	3	0
SPR_00124	tRNA links to Rfam database...	0.57	0.50	0.65	11	2539	6	2	4	0	11
SPR_00126	-	-0.01	0.00	0.00	0	2067	13	5	8	0	20
SPR_00127	-	0.28	0.28	0.29	5	2398	14	2	10	2	13
SPR_00137	tRNA links to Rfam database...	0.84	0.86	0.82	18	2904	10	0	4	6	3
SPR_00138	tRNA links to Rfam database...	0.83	0.85	0.81	17	2905	5	1	3	1	3
SPR_00139	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	1	0	0	1	0
SPR_00141	tRNA links to Rfam database...	1.00	1.00	1.00	20	2755	1	0	0	1	0
SPR_00142	-	0.36	0.26	0.50	5	2618	5	0	5	0	14
SPR_00153	tRNA links to Rfam database...	0.89	0.95	0.83	20	2902	4	4	0	0	1
SPR_00155	tRNA links to Rfam database...	0.92	1.00	0.84	21	2901	4	4	0	0	0
SPR_00156	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00164	tRNA links to Rfam database...	0.25	0.24	0.28	5	2908	13	0	13	0	16
SPR_00166	-	0.73	0.63	0.86	12	2542	3	0	2	1	7
SPR_00167	tRNA links to Rfam database...	1.00	1.00	1.00	20	2536	1	0	0	1	0
SPR_00176	tRNA links to Rfam database...	0.78	0.80	0.76	16	2829	5	2	3	0	4
SPR_00177	tRNA links to Rfam database...	0.70	0.76	0.64	16	2825	9	3	6	0	5
SPR_00178	tRNA links to Rfam database...	0.73	0.76	0.70	16	2827	7	3	4	0	5
SPR_00183	-	0.41	0.35	0.50	7	2836	7	0	7	0	13
SPR_00191	tRNA links to Rfam database...	0.17	0.19	0.17	4	2826	20	4	16	0	17
SPR_00200	tRNA links to Rfam database...	0.68	0.76	0.62	16	2824	10	7	3	0	5
SPR_00209	tRNA links to Rfam database...	0.61	0.63	0.60	12	3550	8	1	7	0	7
SPR_00213	tRNA links to Rfam database...	-0.01	0.00	0.00	0	3802	26	4	22	0	21
SPR_00215	tRNA links to Rfam database...	0.95	0.95	0.95	19	3550	5	0	1	4	1
SPR_00218	tRNA links to Rfam database...	0.51	0.60	0.44	12	3714	17	8	7	2	8
SPR_00219	tRNA links to Rfam database...	1.00	1.00	1.00	20	3721	7	0	0	7	0
SPR_00220	tRNA links to Rfam database...	0.29	0.30	0.29	6	3720	15	3	12	0	14
SPR_00221	tRNA links to Rfam database...	0.24	0.24	0.25	5	3721	19	1	14	4	16
SPR_00223	tRNA links to Rfam database...	0.70	0.65	0.76	13	3553	8	2	2	4	7
SPR_00224	tRNA links to Rfam database...	-0.01	0.00	0.00	0	3720	23	3	18	2	20
SPR_00225	tRNA links to Rfam database...	0.90	0.86	0.95	18	3722	1	0	1	0	3
SPR_00226	tRNA links to Rfam database...	0.78	0.86	0.72	18	3630	7	6	1	0	3
SPR_00227	tRNA links to Rfam database...	0.82	0.86	0.78	18	3463	5	4	1	0	3
SPR_00228	tRNA links to Rfam database...	0.89	1.00	0.80	20	3803	6	5	0	1	0
SPR_00229	tRNA links to Rfam database...	0.85	0.81	0.89	17	3384	2	0	2	0	4
SPR_00230	tRNA links to Rfam database...	0.49	0.52	0.46	11	3546	13	2	11	0	10
SPR_00235	tRNA links to Rfam database...	0.50	0.57	0.44	12	3714	15	7	8	0	9
SPR_00236	tRNA links to Rfam database...	0.25	0.25	0.26	5	3551	14	4	10	0	15
SPR_00246	tRNA links to Rfam database...	0.52	0.45	0.60	9	2686	8	1	5	2	11
SPR_00263	tRNA links to Rfam database...	0.74	0.76	0.73	16	3548	9	1	5	3	5
SPR_00273	tRNA links to Rfam database...	0.44	0.43	0.45	9	2830	11	0	11	0	12
SPR_00276	tRNA links to Rfam database...	0.98	0.95	1.00	20	2906	0	0	0	0	1
SPR_00279	tRNA links to Rfam database...	0.53	0.52	0.55	11	2906	9	4	5	0	10
SPR_00281	-	0.24	0.24	0.27	4	2001	11	3	8	0	13
SPR_00289	tRNA links to Rfam database...	0.73	0.75	0.71	15	2905	8	2	4	2	5
SPR_00294	tRNA links to Rfam database...	0.57	0.57	0.57	12	2829	9	2	7	0	9
SPR_00295	tRNA links to Rfam database...	0.80	0.90	0.70	19	2748	9	6	2	1	2
SPR_00297	tRNA links to Rfam database...	0.78	0.76	0.80	16	2755	4	1	3	0	5
SPR_00298	tRNA links to Rfam database...	0.84	1.00	0.71	20	2747	8	8	0	0	0
SPR_00309	tRNA links to Rfam database...	0.68	0.76	0.62	16	2900	11	5	5	1	5
SPR_00314	tRNA links to Rfam database...	0.71	0.76	0.67	16	2902	8	6	2	0	5
SPR_00315	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	2	0	0	2	0
SPR_00316	tRNA links to Rfam database...	0.92	1.00	0.84	21	2901	5	4	0	1	0
SPR_00317	tRNA links to Rfam database...	0.51	0.60	0.44	12	2899	15	8	7	0	8
SPR_00318	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	2	0	0	2	0
SPR_00320	tRNA links to Rfam database...	0.24	0.26	0.23	5	2753	18	8	9	1	14
SPR_00327	tRNA links to Rfam database...	0.53	0.52	0.55	11	2983	9	1	8	0	10
SPR_00329	tRNA links to Rfam database...	0.59	0.62	0.57	13	2827	11	1	9	1	8
SPR_00331	tRNA links to Rfam database...	0.83	0.85	0.81	17	2754	4	2	2	0	3
SPR_00333	tRNA links to Rfam database...	0.86	0.86	0.86	18	2754	3	0	3	0	3
SPR_00339	tRNA links to Rfam database...	0.51	0.52	0.50	11	2753	12	5	6	1	10
SPR_00353	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00356	tRNA links to Rfam database...	0.87	0.95	0.80	20	2750	5	4	1	0	1
SPR_00357	tRNA links to Rfam database...	0.90	1.00	0.81	21	2900	5	5	0	0	0
SPR_00358	tRNA links to Rfam database...	0.89	1.00	0.80	20	2901	5	5	0	0	0
SPR_00359	tRNA links to Rfam database...	0.71	0.77	0.65	17	2900	10	4	5	1	5
SPR_00360	tRNA links to Rfam database...	0.32	0.32	0.33	7	2680	14	3	11	0	15
SPR_00362	-	0.50	0.54	0.47	7	1416	8	4	4	0	6
SPR_00363	-	-0.01	0.00	0.00	0	1582	14	3	11	0	15
SPR_00364	-	0.28	0.20	0.40	4	2201	6	2	4	0	16
SPR_00365	-	0.60	0.59	0.62	13	2535	8	1	7	0	9
SPR_00366	-	0.76	0.70	0.82	14	2539	3	1	2	0	6
SPR_00367	-	0.69	0.59	0.81	13	2469	3	0	3	0	9
SPR_00369	tRNA links to Rfam database...	0.51	0.57	0.46	12	2749	14	6	8	0	9
SPR_00370	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	0	0	0	0	0
SPR_00373	tRNA links to Rfam database...	0.93	1.00	0.88	21	2826	3	3	0	0	0
SPR_00374	tRNA links to Rfam database...	0.93	1.00	0.88	21	2826	3	3	0	0	0
SPR_00385	tRNA links to Rfam database...	0.75	0.75	0.75	15	4258	11	0	5	6	5
SPR_00386	tRNA links to Rfam database...	-0.01	0.00	0.00	0	4163	24	4	19	1	20
SPR_00388	tRNA links to Rfam database...	0.90	1.00	0.81	21	4160	13	5	0	8	0
SPR_00389	tRNA links to Rfam database...	0.83	0.85	0.81	17	3984	10	1	3	6	3
SPR_00390	tRNA links to Rfam database...	0.60	0.62	0.59	13	4256	17	0	9	8	8
SPR_00391	tRNA links to Rfam database...	0.92	1.00	0.84	21	3803	9	4	0	5	0
SPR_00393	tRNA links to Rfam database...	0.60	0.60	0.60	12	3808	13	3	5	5	8
SPR_00394	tRNA links to Rfam database...	0.26	0.24	0.29	5	3638	16	5	7	4	16
SPR_00395	tRNA links to Rfam database...	0.56	0.57	0.55	12	3983	15	6	4	5	9
SPR_00398	-	-0.01	0.00	0.00	0	2197	14	2	12	0	13
SPR_00399	-	0.67	0.75	0.60	12	2465	9	4	4	1	4
SPR_00402	tRNA links to Rfam database...	1.00	1.00	1.00	21	2535	1	0	0	1	0
SPR_00412	tRNA links to Rfam database...	0.72	0.86	0.60	18	3625	13	8	4	1	3
SPR_00414	tRNA links to Rfam database...	0.82	0.86	0.78	18	3547	9	4	1	4	3
SPR_00415	tRNA links to Rfam database...	0.84	0.86	0.82	18	3548	8	3	1	4	3
SPR_00416	tRNA links to Rfam database...	0.24	0.24	0.25	5	3550	19	2	13	4	16
SPR_00417	tRNA links to Rfam database...	0.52	0.55	0.50	12	3546	16	3	9	4	10
SPR_00418	tRNA links to Rfam database...	0.52	0.55	0.50	12	3546	16	3	9	4	10
SPR_00426	tRNA links to Rfam database...	1.00	1.00	1.00	21	2982	3	0	0	3	0
SPR_00434	tRNA links to Rfam database...	0.90	1.00	0.81	21	2824	5	5	0	0	0
SPR_00435	tRNA links to Rfam database...	0.89	0.95	0.83	20	2826	4	4	0	0	1
SPR_00436	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	1	0	0	1	0
SPR_00437	tRNA links to Rfam database...	0.88	1.00	0.78	21	2748	7	6	0	1	0
SPR_00438	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	0	0	0	0	0
SPR_00439	tRNA links to Rfam database...	0.65	0.60	0.71	12	2684	7	1	4	2	8
SPR_00445	tRNA links to Rfam database...	0.85	0.85	0.85	17	2983	3	2	1	0	3
SPR_00452	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00455	tRNA links to Rfam database...	0.51	0.52	0.50	11	2828	11	5	6	0	10
SPR_00456	tRNA links to Rfam database...	0.68	0.76	0.62	16	2824	11	4	6	1	5
SPR_00458	tRNA links to Rfam database...	0.56	0.55	0.58	11	2831	8	3	5	0	9
SPR_00459	tRNA links to Rfam database...	0.61	0.60	0.63	12	2756	7	4	3	0	8
SPR_00461	tRNA links to Rfam database...	0.83	0.68	1.00	13	2543	1	0	0	1	6
SPR_00462	tRNA links to Rfam database...	0.72	0.74	0.70	14	2395	7	3	3	1	5
SPR_00467	tRNA links to Rfam database...	0.40	0.45	0.36	9	2825	16	2	14	0	11
SPR_00476	tRNA links to Rfam database...	0.76	0.76	0.76	16	2754	5	0	5	0	5
SPR_00478	tRNA links to Rfam database...	0.70	0.76	0.64	16	2750	9	4	5	0	5
SPR_00479	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00481	tRNA links to Rfam database...	0.48	0.48	0.50	10	2755	11	0	10	1	11
SPR_00482	tRNA links to Rfam database...	0.90	0.81	1.00	17	2684	0	0	0	0	4
SPR_00483	tRNA links to Rfam database...	0.92	1.00	0.84	21	2825	4	4	0	0	0
SPR_00487	tRNA links to Rfam database...	0.82	0.82	0.82	18	2679	4	4	0	0	4
SPR_00489	tRNA links to Rfam database...	0.81	0.81	0.81	17	2680	6	4	0	2	4
SPR_00493	tRNA links to Rfam database...	0.89	0.95	0.84	21	2750	4	2	2	0	1
SPR_00496	tRNA links to Rfam database...	0.70	0.76	0.64	16	2750	9	4	5	0	5
SPR_00497	tRNA links to Rfam database...	0.76	0.76	0.76	16	2754	5	0	5	0	5
SPR_00498	tRNA links to Rfam database...	0.83	0.85	0.81	17	2982	5	0	4	1	3
SPR_00502	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00504	tRNA links to Rfam database...	0.91	1.00	0.83	20	2826	4	4	0	0	0
SPR_00505	tRNA links to Rfam database...	0.67	0.75	0.60	15	2901	10	3	7	0	5
SPR_00506	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00509	tRNA links to Rfam database...	0.71	0.75	0.68	15	2904	7	2	5	0	5
SPR_00512	tRNA links to Rfam database...	0.71	0.75	0.68	15	2904	7	2	5	0	5
SPR_00513	tRNA links to Rfam database...	0.44	0.45	0.43	9	2905	12	1	11	0	11
SPR_00517	tRNA links to Rfam database...	0.71	0.75	0.68	15	2828	9	4	3	2	5
SPR_00518	tRNA links to Rfam database...	0.91	1.00	0.83	20	2902	4	4	0	0	0
SPR_00519	tRNA links to Rfam database...	0.80	0.76	0.84	16	2537	4	0	3	1	5
SPR_00520	tRNA links to Rfam database...	0.51	0.50	0.53	9	2539	8	3	5	0	9
SPR_00533	tRNA links to Rfam database...	0.92	1.00	0.84	21	2750	4	4	0	0	0
SPR_00541	tRNA links to Rfam database...	0.50	0.57	0.44	12	3459	15	6	9	0	9
SPR_00542	tRNA links to Rfam database...	0.84	0.86	0.82	18	3548	7	2	2	3	3
SPR_00548	tRNA links to Rfam database...	0.80	0.86	0.75	18	3379	6	2	4	0	3
SPR_00550	tRNA links to Rfam database...	0.35	0.32	0.39	7	3810	14	0	11	3	15
SPR_00552	tRNA links to Rfam database...	0.27	0.26	0.29	5	2684	12	2	10	0	14
SPR_00557	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00561	tRNA links to Rfam database...	0.37	0.43	0.32	9	2822	19	1	18	0	12
SPR_00590	tRNA links to Rfam database...	0.56	0.60	0.52	12	2980	11	4	7	0	8
SPR_00593	tRNA links to Rfam database...	0.77	0.79	0.75	15	2755	6	4	1	1	4
SPR_00595	tRNA links to Rfam database...	0.70	0.76	0.64	16	2750	9	6	3	0	5
SPR_00598	tRNA links to Rfam database...	0.54	0.57	0.52	12	2980	12	5	6	1	9
SPR_00610	tRNA links to Rfam database...	0.87	0.81	0.94	17	2538	2	0	1	1	4
SPR_00620	tRNA links to Rfam database...	0.79	0.81	0.77	17	2981	8	2	3	3	4
SPR_00629	-	-0.01	0.00	0.00	0	1873	18	6	12	0	15
SPR_00632	tRNA links to Rfam database...	0.92	0.85	1.00	17	2539	0	0	0	0	3
SPR_00633	tRNA links to Rfam database...	0.83	0.85	0.81	17	2535	4	4	0	0	3
SPR_00721	tRNA links to Rfam database...	0.18	0.19	0.19	4	2905	17	2	15	0	17
SPR_00722	tRNA links to Rfam database...	0.76	0.80	0.73	16	2904	6	4	2	0	4
SPR_00750	tRNA links to Rfam database...	0.79	0.63	1.00	12	2544	1	0	0	1	7
SPR_00758	tRNA links to Rfam database...	0.53	0.57	0.50	12	2979	12	2	10	0	9
SPR_00760	tRNA links to Rfam database...	0.39	0.43	0.36	9	3545	16	1	15	0	12
SPR_00768	-	0.35	0.39	0.33	7	2059	14	6	8	0	11
SPR_00777	tRNA links to Rfam database...	0.70	0.70	0.70	14	2608	6	1	5	0	6
SPR_00810	tRNA links to Rfam database...	0.85	0.89	0.81	17	3549	9	4	0	5	2
SPR_00816	tRNA links to Rfam database...	0.34	0.35	0.33	7	3465	17	3	11	3	13
SPR_00832	-	0.29	0.27	0.33	4	1641	8	3	5	0	11
SPR_00867	tRNA links to Rfam database...	0.49	0.52	0.46	11	2902	13	3	10	0	10
SPR_00868	tRNA links to Rfam database...	0.95	0.95	0.95	20	2905	2	0	1	1	1
SPR_00882	tRNA links to Rfam database...	0.95	0.90	1.00	18	2610	0	0	0	0	2
SPR_00912	tRNA links to Rfam database...	0.77	0.81	0.74	17	2980	10	4	2	4	4
SPR_00913	tRNA links to Rfam database...	0.26	0.33	0.22	7	2971	25	6	19	0	14
SPR_00932	tRNA links to Rfam database...	0.78	0.76	0.80	16	2830	5	1	3	1	5
SPR_00938	-	-0.01	0.00	0.00	0	1635	18	5	13	0	15
SPR_00943	tRNA links to Rfam database...	0.85	0.85	0.85	17	2536	4	0	3	1	3
SPR_00957	tRNA links to Rfam database...	0.83	0.81	0.85	17	2983	4	0	3	1	4
SPR_01040	tRNA links to Rfam database...	0.17	0.19	0.16	4	2750	21	0	21	0	17
SPR_01051	tRNA links to Rfam database...	0.40	0.48	0.34	10	2527	19	4	15	0	11
SPR_01088	tRNA links to Rfam database...	0.18	0.19	0.18	4	2904	18	1	17	0	17
SPR_01095	tRNA links to Rfam database...	0.38	0.43	0.35	9	2824	17	5	12	0	12
SPR_01103	-	0.82	0.67	1.00	10	1760	1	0	0	1	5
SPR_01106	tRNA links to Rfam database...	0.70	0.76	0.64	16	2531	9	3	6	0	5
SPR_01117	tRNA links to Rfam database...	0.31	0.33	0.29	7	2979	18	1	16	1	14
SPR_01143	tRNA links to Rfam database...	0.41	0.48	0.37	10	2529	17	8	9	0	11
SPR_01157	tRNA links to Rfam database...	0.79	0.81	0.77	17	2753	6	4	1	1	4
SRP_00005	-	0.23	0.25	0.21	6	3977	22	4	18	0	18
SRP_00008	Bacteria_small_SRP links to Rfam database...	0.73	0.72	0.75	18	2902	6	0	6	0	7
SRP_00020	Bacteria_small_SRP links to Rfam database...	0.43	0.42	0.45	14	5534	17	1	16	0	19
SRP_00038	Bacteria_small_SRP links to Rfam database...	0.36	0.36	0.36	12	5017	21	0	21	0	21
SRP_00040	Bacteria_small_SRP links to Rfam database...	0.62	0.58	0.67	18	5538	10	0	9	1	13
SRP_00042	Bacteria_small_SRP links to Rfam database...	0.38	0.36	0.41	9	3983	14	4	9	1	16
SRP_00043	Bacteria_small_SRP links to Rfam database...	0.37	0.34	0.40	10	5025	18	3	12	3	19
SRP_00044	Bacteria_small_SRP links to Rfam database...	0.42	0.44	0.40	14	6070	21	6	15	0	18
SRP_00046	Bacteria_small_SRP links to Rfam database...	0.38	0.38	0.40	12	4723	19	1	17	1	20
SRP_00051	Bacteria_small_SRP links to Rfam database...	0.29	0.30	0.28	9	5428	25	4	19	2	21
SRP_00054	Bacteria_small_SRP links to Rfam database...	0.37	0.38	0.36	12	5532	21	0	21	0	20
SRP_00056	Bacteria_small_SRP links to Rfam database...	0.66	0.59	0.73	22	6411	8	1	7	0	15
SRP_00057	Bacteria_small_SRP links to Rfam database...	0.40	0.34	0.48	12	6303	14	2	11	1	23
SRP_00058	Bacteria_small_SRP links to Rfam database...	0.71	0.68	0.74	23	5747	10	2	6	2	11
SRP_00072	Bacteria_small_SRP links to Rfam database...	0.43	0.41	0.44	12	6301	16	3	12	1	17
SRP_00075	Bacteria_small_SRP links to Rfam database...	0.34	0.35	0.34	12	5530	25	1	22	2	22
SRP_00081	Bacteria_small_SRP links to Rfam database...	0.26	0.26	0.28	8	5536	21	4	17	0	23
SRP_00083	-	0.39	0.33	0.45	10	4829	12	0	12	0	20
SRP_00084	Bacteria_small_SRP links to Rfam database...	0.59	0.59	0.61	20	5427	13	3	10	0	14
SRP_00094	Bacteria_small_SRP links to Rfam database...	0.42	0.42	0.43	10	4072	13	2	11	0	14
SRP_00095	Bacteria_small_SRP links to Rfam database...	0.25	0.28	0.23	7	3975	23	5	18	0	18
SRP_00101	-	0.32	0.32	0.33	8	3546	17	2	14	1	17
SRP_00105	Bacteria_small_SRP links to Rfam database...	0.11	0.12	0.11	4	5529	32	2	30	0	30
SRP_00106	Bacteria_large_SRP links to Rfam database...	0.43	0.52	0.36	13	5217	26	10	13	3	12
SRP_00107	Bacteria_small_SRP links to Rfam database...	0.14	0.16	0.13	3	3631	23	4	17	2	16
SRP_00121	Bacteria_small_SRP links to Rfam database...	0.32	0.32	0.32	8	4253	17	1	16	0	17
SRP_00128	Bacteria_small_SRP links to Rfam database...	0.35	0.36	0.34	13	6748	25	2	23	0	23
SRP_00132	Bacteria_small_SRP links to Rfam database...	0.35	0.34	0.37	10	4824	20	2	15	3	19
SRP_00134	Bacteria_large_SRP links to Rfam database...	0.43	0.45	0.42	13	5964	22	4	14	4	16
SRP_00137	Bacteria_small_SRP links to Rfam database...	0.59	0.52	0.68	13	4167	6	2	4	0	12
SRP_00138	-	0.92	0.85	1.00	23	3982	3	0	0	3	4
SRP_00139	-	-0.01	0.00	0.00	0	2132	13	3	10	0	12
SRP_00141	Bacteria_small_SRP links to Rfam database...	0.63	0.59	0.69	24	6293	11	0	11	0	17
SRP_00145	Bacteria_small_SRP links to Rfam database...	0.80	0.73	0.88	29	6295	4	2	2	0	11
SRP_00146	Bacteria_small_SRP links to Rfam database...	0.33	0.33	0.34	12	5218	23	4	19	0	24
SRP_00161	Bacteria_small_SRP links to Rfam database...	0.15	0.14	0.18	3	2833	14	2	12	0	19
SRP_00162	Bacteria_small_SRP links to Rfam database...	0.33	0.30	0.37	7	2907	13	2	10	1	16
SRP_00163	Bacteria_small_SRP links to Rfam database...	0.28	0.27	0.30	7	3463	16	4	12	0	19
SRP_00164	Bacteria_small_SRP links to Rfam database...	0.36	0.37	0.36	13	6867	23	6	17	0	22
SRP_00170	Bacteria_small_SRP links to Rfam database...	0.36	0.36	0.38	9	4071	16	2	13	1	16
SRP_00193	-	0.28	0.28	0.29	10	6869	25	1	23	1	26
SRP_00194	Bacteria_small_SRP links to Rfam database...	0.56	0.48	0.67	10	3225	5	0	5	0	11
SRP_00196	-	0.28	0.25	0.33	7	4635	14	2	12	0	21
SRP_00200	Bacteria_small_SRP links to Rfam database...	0.61	0.56	0.67	20	6873	10	1	9	0	16
SRP_00209	Bacteria_small_SRP links to Rfam database...	0.40	0.41	0.39	11	4628	17	3	14	0	16
SRP_00213	Bacteria_small_SRP links to Rfam database...	0.36	0.40	0.33	10	4156	20	5	15	0	15
SRP_00214	-	0.62	0.46	0.85	11	3068	2	0	2	0	13
SRP_00215	Bacteria_small_SRP links to Rfam database...	0.71	0.64	0.80	16	3220	4	0	4	0	9
SRP_00216	Bacteria_small_SRP links to Rfam database...	0.75	0.67	0.86	18	3382	3	1	2	0	9
SRP_00217	Bacteria_small_SRP links to Rfam database...	0.30	0.29	0.32	7	3299	15	4	11	0	17
SRP_00219	Bacteria_small_SRP links to Rfam database...	0.31	0.30	0.33	7	3300	15	1	13	1	16
SRP_00221	-	0.50	0.52	0.48	11	3380	12	3	9	0	10
SRP_00222	Bacteria_small_SRP links to Rfam database...	0.42	0.44	0.41	11	3054	16	2	14	0	14
SRP_00223	-	0.21	0.20	0.22	4	3385	14	5	9	0	16
SRP_00227	Bacteria_small_SRP links to Rfam database...	0.85	0.81	0.89	25	5123	3	0	3	0	6
SRP_00229	Bacteria_small_SRP links to Rfam database...	0.37	0.37	0.37	10	5226	17	5	12	0	17
SRP_00231	Bacteria_small_SRP links to Rfam database...	0.62	0.59	0.67	20	5430	10	2	8	0	14
SRP_00233	Bacteria_small_SRP links to Rfam database...	0.36	0.33	0.39	11	5123	17	0	17	0	22
SRP_00235	-	0.78	0.61	1.00	20	5030	0	0	0	0	13
SRP_00243	Bacteria_small_SRP links to Rfam database...	0.37	0.29	0.47	9	5132	10	1	9	0	22
SRP_00244	Bacteria_small_SRP links to Rfam database...	0.55	0.49	0.63	19	6873	11	0	11	0	20
SRP_00250	Bacteria_small_SRP links to Rfam database...	0.66	0.58	0.75	21	6758	9	0	7	2	15
SRP_00251	Bacteria_small_SRP links to Rfam database...	0.36	0.36	0.36	13	6985	23	2	21	0	23
SRP_00256	-	-0.01	0.00	0.00	0	4253	26	2	23	1	22
SRP_00266	Bacteria_small_SRP links to Rfam database...	0.51	0.45	0.59	13	4634	9	0	9	0	16
SRP_00268	Bacteria_small_SRP links to Rfam database...	0.48	0.48	0.48	13	4159	14	2	12	0	14
SRP_00269	Bacteria_small_SRP links to Rfam database...	0.44	0.42	0.47	14	5020	16	3	13	0	19
SRP_00270	Bacteria_small_SRP links to Rfam database...	0.46	0.45	0.48	14	4627	15	2	13	0	17
SRP_00271	Bacteria_small_SRP links to Rfam database...	0.16	0.17	0.17	4	3217	19	2	17	0	20
SRP_00273	Bacteria_small_SRP links to Rfam database...	0.56	0.48	0.66	19	6757	10	0	10	0	21
SRP_00274	Bacteria_small_SRP links to Rfam database...	0.79	0.71	0.87	27	6872	4	1	3	0	11
SRP_00284	-	0.42	0.38	0.48	11	3718	12	1	11	0	18
SRP_00285	Bacteria_small_SRP links to Rfam database...	0.93	0.87	1.00	26	3715	0	0	0	0	4
SRP_00295	Bacteria_small_SRP links to Rfam database...	0.95	0.89	1.00	34	6869	0	0	0	0	4
SRP_00303	Bacteria_small_SRP links to Rfam database...	0.27	0.25	0.30	8	6643	19	1	18	0	24
SRP_00310	Bacteria_small_SRP links to Rfam database...	0.18	0.17	0.19	4	2905	17	4	13	0	19
SRP_00312	Bacteria_small_SRP links to Rfam database...	0.32	0.37	0.29	10	4151	25	4	21	0	17
SRP_00315	Bacteria_small_SRP links to Rfam database...	0.18	0.17	0.20	4	2906	16	1	15	0	19
SRP_00318	Bacteria_small_SRP links to Rfam database...	0.44	0.43	0.45	10	2981	12	2	10	0	13
SRP_00324	Bacteria_small_SRP links to Rfam database...	0.30	0.31	0.29	9	5325	22	5	17	0	20
SRP_00325	Bacteria_small_SRP links to Rfam database...	0.41	0.33	0.52	11	4350	10	0	10	0	22
SRP_00326	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	5020	30	3	27	0	31
SRP_00333	Bacteria_small_SRP links to Rfam database...	0.54	0.50	0.59	17	5122	12	2	10	0	17
SRP_00338	Bacteria_small_SRP links to Rfam database...	0.61	0.56	0.67	20	5430	10	0	10	0	16
SRP_00341	Bacteria_small_SRP links to Rfam database...	0.11	0.10	0.14	3	4732	18	1	17	0	28
SRP_00342	Bacteria_small_SRP links to Rfam database...	0.38	0.36	0.41	9	3983	13	2	11	0	16
SRP_00350	Bacteria_small_SRP links to Rfam database...	0.34	0.33	0.35	9	3890	17	3	14	0	18
SRP_00356	Bacteria_small_SRP links to Rfam database...	0.47	0.43	0.52	13	5025	12	4	8	0	17
SRP_00357	Bacteria_small_SRP links to Rfam database...	0.46	0.44	0.48	16	5323	17	1	16	0	20
SRP_00358	Bacteria_small_SRP links to Rfam database...	0.48	0.46	0.52	16	6297	15	0	15	0	19
SRP_00363	Bacteria_small_SRP links to Rfam database...	0.63	0.40	1.00	12	4741	2	0	0	2	18
SRP_00365	Bacteria_small_SRP links to Rfam database...	0.60	0.59	0.62	16	3377	10	0	10	0	11
SRP_00367	Bacteria_small_SRP links to Rfam database...	0.69	0.69	0.71	24	6752	10	0	10	0	11
SRP_00369	Bacteria_small_SRP links to Rfam database...	0.53	0.51	0.55	18	5745	15	2	13	0	17
SRP_00383	Bacteria_small_SRP links to Rfam database...	0.11	0.13	0.12	3	3214	23	2	21	0	21
TMR_00272	-	1.00	1.00	1.00	31	5120	0	0	0	0	0

^top

Performance of Vsfold4 - scored lower in this pairwise comparison

1. Total counts & total scores for Vsfold4

Total Base Pair Counts
Total TP	7690
Total TN	2102571
Total FP	6383
Total FP CONTRA	670
Total FP INCONS	5140
Total FP COMP	573
Total FN	8611

Total Scores
MCC	0.515
Average MCC ± 95% Confidence Intervals	0.544 ± 0.025
Sensitivity	0.472
Positive Predictive Value	0.570
Nr of predictions	796

^top

2. Individual counts for Vsfold4 [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
CRW_00548	5S_rRNA links to Rfam database...	0.44	0.42	0.46	16	7346	19	3	16	0	22
CRW_00552	5S_rRNA links to Rfam database...	0.12	0.10	0.14	4	7112	24	2	22	0	35
CRW_00555	5S_rRNA links to Rfam database...	0.15	0.13	0.19	5	7600	21	1	20	0	35
CRW_00567	5S_rRNA links to Rfam database...	0.33	0.33	0.35	13	7466	25	5	19	1	27
CRW_00570	5S_rRNA links to Rfam database...	0.83	0.81	0.86	30	6868	5	0	5	0	7
CRW_00573	5S_rRNA links to Rfam database...	0.36	0.33	0.41	13	7108	19	1	18	0	27
CRW_01484	5S_rRNA links to Rfam database...	0.32	0.28	0.38	11	7474	18	1	17	0	28
CRW_01485	5S_rRNA links to Rfam database...	0.47	0.41	0.53	16	7473	14	3	11	0	23
CRW_01489	5S_rRNA links to Rfam database...	0.33	0.31	0.35	12	7469	22	3	19	0	27
CRW_01491	5S_rRNA links to Rfam database...	0.26	0.21	0.32	9	8357	19	3	16	0	34
CRW_01492	5S_rRNA links to Rfam database...	0.74	0.69	0.81	29	7590	9	0	7	2	13
CRW_01494	5S_rRNA links to Rfam database...	0.71	0.63	0.81	25	7109	7	0	6	1	15
CRW_01497	5S_rRNA links to Rfam database...	0.59	0.48	0.73	19	7114	9	0	7	2	21
CRW_01498	5S_rRNA links to Rfam database...	0.49	0.44	0.54	19	8093	16	0	16	0	24
CRW_01499	5S_rRNA links to Rfam database...	0.14	0.12	0.16	5	7970	26	3	23	0	36
CRW_01500	5S_rRNA links to Rfam database...	0.32	0.29	0.35	11	7719	20	2	18	0	27
CRW_01502	5S_rRNA links to Rfam database...	0.44	0.43	0.44	20	8340	27	1	24	2	26
CRW_01504	5S_rRNA links to Rfam database...	0.32	0.30	0.34	13	7837	25	4	21	0	30
CRW_01507	5S_rRNA links to Rfam database...	0.17	0.15	0.20	6	7473	24	2	22	0	35
CRW_01521	5S_rRNA links to Rfam database...	0.45	0.39	0.52	14	6876	14	2	11	1	22
CRW_01532	5S_rRNA links to Rfam database...	0.00	0.00	0.00	0	7109	31	3	28	0	37
CRW_01533	5S_rRNA links to Rfam database...	0.57	0.51	0.63	19	7110	12	0	11	1	18
CRW_01535	5S_rRNA links to Rfam database...	0.26	0.24	0.29	9	7109	23	1	21	1	28
CRW_01536	5S_rRNA links to Rfam database...	0.50	0.46	0.55	17	6990	14	1	13	0	20
CRW_01537	5S_rRNA links to Rfam database...	0.00	0.00	0.00	0	7111	29	5	24	0	37
CRW_01539	5S_rRNA links to Rfam database...	0.00	0.00	0.00	0	7113	30	1	26	3	37
CRW_01540	5S_rRNA links to Rfam database...	0.24	0.24	0.25	9	7104	27	4	23	0	28
CRW_01541	5S_rRNA links to Rfam database...	0.49	0.43	0.55	16	7111	14	1	12	1	21
CRW_01542	5S_rRNA links to Rfam database...	0.24	0.24	0.25	9	7104	27	2	25	0	28
CRW_01548	5S_rRNA links to Rfam database...	0.12	0.11	0.14	4	6992	25	1	24	0	33
CRW_01556	5S_rRNA links to Rfam database...	0.73	0.70	0.76	26	7106	12	0	8	4	11
CRW_01557	5S_rRNA links to Rfam database...	0.23	0.22	0.26	8	7109	23	3	20	0	29
CRW_01559	5S_rRNA links to Rfam database...	0.35	0.32	0.38	12	7228	22	2	18	2	25
CRW_01562	5S_rRNA links to Rfam database...	0.16	0.14	0.20	5	7115	20	3	17	0	32
CRW_01563	5S_rRNA links to Rfam database...	0.85	0.73	1.00	27	6876	1	0	0	1	10
CRW_01566	5S_rRNA links to Rfam database...	0.49	0.46	0.53	17	7108	16	2	13	1	20
CRW_01568	5S_rRNA links to Rfam database...	0.56	0.49	0.64	18	7112	10	0	10	0	19
CRW_01569	5S_rRNA links to Rfam database...	0.27	0.24	0.30	9	7110	21	2	19	0	28
CRW_01570	5S_rRNA links to Rfam database...	0.38	0.35	0.42	13	7109	18	3	15	0	24
CRW_01572	5S_rRNA links to Rfam database...	0.00	0.00	0.00	0	6992	30	5	24	1	37
CRW_01573	5S_rRNA links to Rfam database...	0.25	0.24	0.26	9	7226	25	3	22	0	28
CRW_01578	5S_rRNA links to Rfam database...	0.49	0.43	0.55	16	7111	13	0	13	0	21
CRW_01580	5S_rRNA links to Rfam database...	0.13	0.11	0.15	4	7114	22	2	20	0	33
CRW_01581	5S_rRNA links to Rfam database...	0.21	0.19	0.25	7	7112	21	0	21	0	30
CRW_01583	5S_rRNA links to Rfam database...	0.42	0.35	0.50	13	7114	16	0	13	3	24
CRW_01584	5S_rRNA links to Rfam database...	0.00	0.00	0.00	0	7115	26	0	25	1	37
CRW_01590	5S_rRNA links to Rfam database...	0.00	0.00	0.00	0	7106	34	4	30	0	37
CRW_01593	5S_rRNA links to Rfam database...	0.26	0.24	0.28	9	7108	23	4	19	0	28
CRW_01599	5S_rRNA links to Rfam database...	0.48	0.46	0.52	17	7107	16	1	15	0	20
CRW_01603	5S_rRNA links to Rfam database...	0.00	0.00	0.00	0	7113	27	5	22	0	37
CRW_01605	5S_rRNA links to Rfam database...	0.13	0.14	0.14	5	7105	30	5	25	0	32
CRW_01606	5S_rRNA links to Rfam database...	0.20	0.19	0.23	7	7109	24	0	24	0	30
CRW_01608	5S_rRNA links to Rfam database...	0.48	0.46	0.52	17	8352	17	2	14	1	20
CRW_01613	5S_rRNA links to Rfam database...	0.87	0.76	1.00	28	6993	1	0	0	1	9
CRW_01616	5S_rRNA links to Rfam database...	0.00	0.00	0.00	0	7114	26	3	23	0	37
CRW_01617	5S_rRNA links to Rfam database...	0.37	0.35	0.41	13	7108	19	2	17	0	24
CRW_01620	5S_rRNA links to Rfam database...	0.93	0.86	1.00	32	6989	1	0	0	1	5
CRW_01621	5S_rRNA links to Rfam database...	0.15	0.14	0.19	5	7113	22	2	20	0	32
CRW_01623	5S_rRNA links to Rfam database...	0.20	0.19	0.21	7	7107	26	2	24	0	30
NDB_00014	-	0.89	0.80	1.00	8	182	0	0	0	0	2
NDB_00015	-	0.38	0.40	0.40	4	266	6	0	6	0	6
NDB_00016	-	-0.03	0.00	0.00	0	270	6	0	6	0	12
NDB_00047	-	0.86	0.75	1.00	9	267	0	0	0	0	3
NDB_00048	-	-0.02	0.00	0.00	0	1514	26	0	26	0	28
NDB_00049	-	0.92	0.85	1.00	11	314	0	0	0	0	2
NDB_00051	tRNA links to Rfam database...	0.91	0.83	1.00	20	2755	0	0	0	0	4
PDB_00001	-	-0.02	0.00	0.00	0	272	4	0	4	0	12
PDB_00002	-	0.79	0.75	0.86	6	203	1	0	1	0	2
PDB_00003	-	0.81	0.67	1.00	8	343	0	0	0	0	4
PDB_00004	-	0.23	0.16	0.38	3	812	5	0	5	0	16
PDB_00005	Tymo_tRNA-like links to Rfam database...	0.84	0.71	1.00	10	936	0	0	0	0	4
PDB_00006	-	0.84	0.71	1.00	10	693	0	0	0	0	4
PDB_00011	-	0.86	0.75	1.00	9	267	0	0	0	0	3
PDB_00012	mir-TAR links to Rfam database...	1.00	1.00	1.00	7	399	3	0	0	3	0
PDB_00013	-	1.00	1.00	1.00	10	396	1	0	0	1	0
PDB_00017	-	-0.02	0.00	0.00	0	695	8	0	8	0	15
PDB_00018	-	0.20	0.20	0.22	4	1017	14	2	12	0	16
PDB_00019	-	0.48	0.50	0.50	4	245	4	0	4	0	4
PDB_00020	-	0.46	0.35	0.64	7	769	4	0	4	0	13
PDB_00021	-	1.00	1.00	1.00	8	182	0	0	0	0	0
PDB_00022	-	0.74	0.56	1.00	5	248	0	0	0	0	4
PDB_00032	-	0.63	0.40	1.00	6	897	0	0	0	0	9
PDB_00034	-	0.57	0.33	1.00	4	374	0	0	0	0	8
PDB_00035	-	0.88	0.78	1.00	7	203	0	0	0	0	2
PDB_00036	-	-0.01	0.00	0.00	0	3466	26	0	20	6	27
PDB_00039	-	-0.01	0.00	0.00	0	5326	30	1	29	0	45
PDB_00040	-	0.63	0.40	1.00	4	272	0	0	0	0	6
PDB_00041	-	0.70	0.50	1.00	6	624	0	0	0	0	6
PDB_00043	-	0.78	0.62	1.00	8	427	0	0	0	0	5
PDB_00048	-	0.94	0.89	1.00	8	292	1	0	0	1	1
PDB_00049	-	0.62	0.40	1.00	4	227	0	0	0	0	6
PDB_00053	-	0.73	0.55	1.00	6	429	0	0	0	0	5
PDB_00054	-	-0.04	0.00	0.00	0	185	5	0	5	0	10
PDB_00056	-	-0.02	0.00	0.00	0	618	12	0	12	0	16
PDB_00057	-	0.79	0.80	0.80	8	341	3	0	2	1	2
PDB_00065	-	0.54	0.30	1.00	3	403	1	0	0	1	7
PDB_00070	tRNA links to Rfam database...	0.42	0.38	0.47	9	2831	11	0	10	1	15
PDB_00074	-	-0.03	0.00	0.00	0	370	8	0	8	0	12
PDB_00081	-	0.94	0.89	1.00	8	182	0	0	0	0	1
PDB_00088	-	0.86	0.75	1.00	9	426	1	0	0	1	3
PDB_00096	-	0.76	0.67	0.89	8	316	1	0	1	0	4
PDB_00098	-	0.81	0.67	1.00	4	227	0	0	0	0	2
PDB_00102	-	0.93	0.88	1.00	7	224	0	0	0	0	1
PDB_00104	-	-0.02	0.00	0.00	0	617	13	0	13	0	16
PDB_00107	-	0.95	0.91	1.00	10	455	1	0	0	1	1
PDB_00108	-	0.92	0.86	1.00	6	204	0	0	0	0	1
PDB_00113	-	0.74	0.56	1.00	5	226	0	0	0	0	4
PDB_00115	-	-0.03	0.00	0.00	0	547	14	0	14	0	16
PDB_00116	-	0.00	0.00	0.00	0	231	0	0	0	0	6
PDB_00119	-	0.95	0.90	1.00	9	244	0	0	0	0	1
PDB_00120	-	0.95	0.90	1.00	9	222	0	0	0	0	1
PDB_00121	-	-0.03	0.00	0.00	0	227	4	0	4	0	10
PDB_00122	-	0.91	0.83	1.00	10	290	0	0	0	0	2
PDB_00123	-	0.35	0.33	0.38	12	4154	20	0	20	0	24
PDB_00124	-	0.59	0.50	0.71	5	489	2	0	2	0	5
PDB_00125	-	-0.03	0.00	0.00	0	227	4	0	4	0	10
PDB_00128	-	0.17	0.14	0.25	2	488	6	1	5	0	12
PDB_00130	-	1.00	1.00	1.00	6	270	0	0	0	0	0
PDB_00132	-	0.70	0.50	1.00	6	429	0	0	0	0	6
PDB_00134	-	0.79	0.63	1.00	5	373	0	0	0	0	3
PDB_00136	-	0.85	0.77	0.95	20	2394	1	0	1	0	6
PDB_00137	-	0.87	0.77	1.00	10	396	0	0	0	0	3
PDB_00138	-	0.79	0.63	1.00	5	373	0	0	0	0	3
PDB_00142	-	0.91	0.83	1.00	10	425	0	0	0	0	2
PDB_00149	-	0.89	0.80	1.00	12	691	0	0	0	0	3
PDB_00150	-	0.34	0.30	0.43	3	293	5	0	4	1	7
PDB_00152	-	0.93	0.88	1.00	7	183	0	0	0	0	1
PDB_00153	-	0.95	0.90	1.00	9	244	0	0	0	0	1
PDB_00155	-	0.86	0.75	1.00	6	319	0	0	0	0	2
PDB_00157	-	0.24	0.21	0.30	6	3301	17	0	14	3	23
PDB_00158	-	0.77	0.60	1.00	12	849	0	0	0	0	8
PDB_00159	-	0.67	0.45	1.00	5	346	0	0	0	0	6
PDB_00160	-	0.94	0.89	1.00	8	268	0	0	0	0	1
PDB_00168	-	0.81	0.67	1.00	4	296	1	0	0	1	2
PDB_00169	-	0.43	0.40	0.50	4	223	4	0	4	0	6
PDB_00170	-	0.93	0.88	1.00	14	616	0	0	0	0	2
PDB_00171	-	0.70	0.50	1.00	6	429	0	0	0	0	6
PDB_00174	-	0.90	0.82	1.00	18	1017	0	0	0	0	4
PDB_00175	-	-0.01	0.00	0.00	0	4531	29	0	29	0	36
PDB_00178	-	0.39	0.36	0.44	4	519	5	1	4	0	7
PDB_00182	-	0.66	0.44	1.00	4	249	0	0	0	0	5
PDB_00183	-	0.19	0.17	0.22	4	1467	14	0	14	0	19
PDB_00184	-	0.87	0.77	1.00	10	551	0	0	0	0	3
PDB_00185	-	0.55	0.50	0.61	14	2903	10	0	9	1	14
PDB_00190	-	0.89	0.80	1.00	8	223	0	0	0	0	2
PDB_00192	-	0.53	0.31	0.92	11	3228	1	0	1	0	25
PDB_00196	-	0.84	0.71	1.00	20	1576	0	0	0	0	8
PDB_00197	-	-0.02	0.00	0.00	0	296	4	0	4	0	7
PDB_00200	-	0.88	0.78	1.00	7	203	0	0	0	0	2
PDB_00201	-	0.77	0.60	1.00	6	319	0	0	0	0	4
PDB_00202	-	0.96	0.93	1.00	13	548	1	0	0	1	1
PDB_00203	-	0.96	0.92	1.00	12	549	0	0	0	0	1
PDB_00205	-	0.84	0.71	1.00	10	425	0	0	0	0	4
PDB_00206	-	1.00	1.00	1.00	8	268	0	0	0	0	0
PDB_00207	-	0.88	0.79	1.00	11	367	0	0	0	0	3
PDB_00209	-	0.56	0.45	0.71	5	554	2	0	2	0	6
PDB_00211	-	0.89	0.80	1.00	8	182	0	0	0	0	2
PDB_00213	Gammaretro_CES links to Rfam database...	0.46	0.41	0.52	17	5017	16	0	16	0	24
PDB_00214	-	0.73	0.55	1.00	6	400	0	0	0	0	5
PDB_00215	-	-0.02	0.00	0.00	0	1107	21	0	21	0	24
PDB_00219	-	0.92	0.86	1.00	6	204	0	0	0	0	1
PDB_00221	-	0.62	0.56	0.71	5	246	2	0	2	0	4
PDB_00224	-	0.93	0.88	1.00	7	183	0	0	0	0	1
PDB_00229	tRNA links to Rfam database...	0.89	0.83	0.95	19	2755	1	0	1	0	4
PDB_00234	-	0.76	0.58	1.00	7	269	0	0	0	0	5
PDB_00236	-	-0.02	0.00	0.00	0	1112	16	0	16	0	24
PDB_00237	-	0.66	0.44	1.00	4	374	1	0	0	1	5
PDB_00239	-	0.30	0.22	0.44	4	811	5	0	5	0	14
PDB_00243	-	0.76	0.58	1.00	7	623	0	0	0	0	5
PDB_00248	-	0.86	0.75	1.00	9	267	0	0	0	0	3
PDB_00249	-	0.00	0.00	0.00	0	276	0	0	0	0	11
PDB_00250	-	0.41	0.36	0.47	9	1751	10	2	8	0	16
PDB_00252	-	0.89	0.80	1.00	12	768	0	0	0	0	3
PDB_00254	-	-0.04	0.00	0.00	0	267	9	0	9	0	12
PDB_00256	-	-0.02	0.00	0.00	0	319	6	6	0	0	4
PDB_00257	-	0.79	0.64	1.00	7	344	0	0	0	0	4
PDB_00258	-	1.00	1.00	1.00	8	245	0	0	0	0	0
PDB_00261	-	-0.02	0.00	0.00	0	491	5	0	5	0	16
PDB_00262	-	0.25	0.25	0.27	6	1106	16	0	16	0	18
PDB_00264	-	-0.01	0.00	0.00	0	1114	14	0	14	0	18
PDB_00267	-	-0.03	0.00	0.00	0	367	11	0	11	0	14
PDB_00286	-	-0.03	0.00	0.00	0	184	7	0	6	1	6
PDB_00293	-	-0.01	0.00	0.00	0	1112	16	8	8	0	12
PDB_00312	-	1.00	1.00	1.00	9	426	0	0	0	0	0
PDB_00313	tRNA links to Rfam database...	0.81	0.79	0.83	15	2683	5	1	2	2	4
PDB_00317	-	1.00	1.00	1.00	10	368	0	0	0	0	0
PDB_00326	-	0.31	0.25	0.39	7	3723	11	0	11	0	21
PDB_00327	tRNA links to Rfam database...	0.69	0.70	0.70	16	3058	7	0	7	0	7
PDB_00339	-	0.75	0.56	1.00	9	657	0	0	0	0	7
PDB_00341	-	0.55	0.44	0.70	7	693	3	0	3	0	9
PDB_00342	-	-0.02	0.00	0.00	0	762	18	0	18	0	10
PDB_00343	-	0.74	0.67	0.82	14	1579	4	0	3	1	7
PDB_00347	-	0.67	0.45	1.00	9	1167	0	0	0	0	11
PDB_00349	-	-0.01	0.00	0.00	0	940	6	0	6	0	14
PDB_00351	-	-0.01	0.00	0.00	0	557	4	0	4	0	12
PDB_00352	-	0.89	0.79	1.00	15	1210	0	0	0	0	4
PDB_00357	-	0.77	0.60	1.00	6	774	0	0	0	0	4
PDB_00362	tRNA links to Rfam database...	0.95	0.91	1.00	20	2830	0	0	0	0	2
PDB_00365	-	0.96	0.93	1.00	13	422	0	0	0	0	1
PDB_00371	-	0.81	0.67	1.00	10	551	0	0	0	0	5
PDB_00377	-	0.91	0.92	0.92	11	516	1	0	1	0	1
PDB_00378	-	0.88	0.79	1.00	11	692	0	0	0	0	3
PDB_00392	tRNA links to Rfam database...	0.46	0.48	0.45	10	2828	12	2	10	0	11
PDB_00400	-	-0.01	0.00	0.00	0	3145	15	0	15	0	34
PDB_00402	tRNA links to Rfam database...	0.93	0.87	1.00	20	2755	0	0	0	0	3
PDB_00411	-	0.54	0.47	0.64	7	584	4	0	4	0	8
PDB_00420	-	0.54	0.30	1.00	3	493	3	0	0	3	7
PDB_00425	tRNA links to Rfam database...	0.75	0.68	0.83	15	2683	3	2	1	0	7
PDB_00430	tRNA links to Rfam database...	0.78	0.72	0.86	18	3219	3	1	2	0	7
PDB_00431	tRNA links to Rfam database...	0.70	0.65	0.76	13	2194	4	0	4	0	7
PDB_00433	-	0.42	0.38	0.46	13	6642	15	0	15	0	21
PDB_00454	-	0.26	0.25	0.29	8	2673	20	0	20	0	24
PDB_00474	tRNA links to Rfam database...	0.96	0.91	1.00	21	2680	0	0	0	0	2
PDB_00481	-	-0.01	0.00	0.00	0	1875	16	0	16	0	26
PDB_00513	-	1.00	1.00	1.00	7	224	0	0	0	0	0
PDB_00522	-	0.45	0.44	0.47	8	1111	9	0	9	0	10
PDB_00526	-	-0.01	0.00	0.00	0	294	6	1	5	0	3
PDB_00527	-	-0.02	0.00	0.00	0	294	6	1	5	0	5
PDB_00537	-	0.94	0.89	1.00	8	398	0	0	0	0	1
PDB_00553	mir-TAR links to Rfam database...	1.00	1.00	1.00	11	454	0	0	0	0	0
PDB_00565	-	0.29	0.26	0.34	13	8090	25	1	24	0	37
PDB_00570	-	0.22	0.18	0.29	4	2264	10	1	9	0	18
PDB_00571	tRNA links to Rfam database...	0.87	0.80	0.95	20	3300	1	1	0	0	5
PDB_00573	-	0.26	0.24	0.29	8	6642	24	0	20	4	26
PDB_00584	-	0.27	0.24	0.33	4	1473	8	0	8	0	13
PDB_00599	-	0.92	0.86	1.00	12	549	0	0	0	0	2
PDB_00603	-	0.95	0.90	1.00	9	244	0	0	0	0	1
PDB_00611	-	-0.01	0.00	0.00	0	771	9	2	7	0	11
PDB_00617	-	0.95	0.90	1.00	9	267	0	0	0	0	1
PDB_00627	-	0.75	0.71	0.80	12	1638	4	0	3	1	5
PDB_00629	-	0.22	0.17	0.31	4	1640	9	1	8	0	19
PDB_00637	-	0.85	0.76	0.94	16	2329	3	0	1	2	5
PDB_00648	-	0.96	0.92	1.00	12	849	0	0	0	0	1
PDB_00667	tRNA links to Rfam database...	0.71	0.68	0.75	15	2830	6	4	1	1	7
PDB_00681	-	-0.01	0.00	0.00	0	1256	19	2	17	0	19
PDB_00682	-	-0.03	0.00	0.00	0	484	12	0	12	0	16
PDB_00686	-	0.92	0.84	1.00	16	687	0	0	0	0	3
PDB_00692	-	-0.01	0.00	0.00	0	1215	10	0	10	0	20
PDB_00693	-	0.94	0.88	1.00	15	1161	0	0	0	0	2
PDB_00698	-	-0.02	0.00	0.00	0	848	13	0	13	0	19
PDB_00702	-	0.37	0.33	0.43	12	4343	18	0	16	2	24
PDB_00705	-	-0.03	0.00	0.00	0	246	7	0	7	0	8
PDB_00709	-	-0.02	0.00	0.00	0	770	10	0	10	0	16
PDB_00710	-	0.00	0.00	0.00	0	780	0	0	0	0	16
PDB_00713	-	0.47	0.43	0.53	9	1999	8	0	8	0	12
PDB_00716	HDV_ribozyme links to Rfam database...	0.17	0.17	0.18	4	2679	19	0	18	1	19
PDB_00724	-	-0.01	0.00	0.00	0	2123	22	0	22	0	29
PDB_00725	-	0.85	0.73	1.00	11	584	0	0	0	0	4
PDB_00726	-	0.49	0.44	0.57	4	344	3	0	3	0	5
PDB_00727	-	1.00	1.00	1.00	7	554	3	0	0	3	0
PDB_00728	-	0.97	0.93	1.00	14	482	0	0	0	0	1
PDB_00732	-	-0.01	0.00	0.00	0	2976	27	0	27	0	30
PDB_00733	-	0.22	0.20	0.25	6	2902	19	1	17	1	24
PDB_00734	-	0.62	0.40	1.00	4	227	0	0	0	0	6
PDB_00740	-	0.51	0.27	1.00	3	228	0	0	0	0	8
PDB_00741	Entero_5_CRE links to Rfam database...	0.84	0.71	1.00	12	691	0	0	0	0	5
PDB_00746	-	0.45	0.42	0.48	16	4720	18	0	17	1	22
PDB_00750	-	0.52	0.47	0.58	23	11895	17	0	17	0	26
PDB_00751	-	0.73	0.54	1.00	7	588	2	0	0	2	6
PDB_00754	-	0.21	0.25	0.19	3	1469	14	4	9	1	9
PDB_00767	-	0.97	0.95	1.00	19	2192	4	0	0	4	1
PDB_00800	-	0.30	0.31	0.31	9	2051	20	1	19	0	20
PDB_00806	-	-0.01	0.00	0.00	0	1820	10	0	10	0	25
PDB_00807	-	0.55	0.30	1.00	7	1884	0	0	0	0	16
PDB_00809	-	-0.02	0.00	0.00	0	489	7	0	7	0	14
PDB_00810	s2m links to Rfam database...	0.45	0.35	0.60	6	1071	4	2	2	0	11
PDB_00815	-	0.74	0.56	1.00	5	625	0	0	0	0	4
PDB_00823	-	-0.03	0.00	0.00	0	186	4	0	4	0	9
PDB_00828	Purine links to Rfam database...	0.86	0.74	1.00	20	2465	0	0	0	0	7
PDB_00829	Purine links to Rfam database...	0.86	0.75	1.00	18	2260	0	0	0	0	6
PDB_00842	-	0.79	0.63	1.00	5	373	0	0	0	0	3
PDB_00851	-	0.56	0.44	0.72	18	4728	7	0	7	0	23
PDB_00855	-	1.00	1.00	1.00	10	455	1	0	0	1	0
PDB_00857	-	0.77	0.60	1.00	9	1072	0	0	0	0	6
PDB_00863	-	0.59	0.44	0.80	8	980	2	0	2	0	10
PDB_00865	-	0.96	0.92	1.00	11	340	0	0	0	0	1
PDB_00868	-	0.96	0.93	1.00	13	1313	0	0	0	0	1
PDB_00870	-	-0.01	0.00	0.00	0	1113	15	0	15	0	16
PDB_00871	-	-0.02	0.00	0.00	0	1107	21	0	21	0	24
PDB_00874	-	-0.01	0.00	0.00	0	936	10	0	10	0	20
PDB_00876	HIV_FE links to Rfam database...	0.92	0.85	1.00	17	973	0	0	0	0	3
PDB_00878	-	-0.02	0.00	0.00	0	490	6	0	6	0	12
PDB_00879	-	0.78	0.62	1.00	24	5026	1	0	0	1	15
PDB_00883	-	0.96	0.92	1.00	11	619	0	0	0	0	1
PDB_00885	-	0.71	0.56	0.91	10	809	1	0	1	0	8
PDB_00886	-	-0.01	0.00	0.00	0	4152	34	0	34	0	40
PDB_00890	-	0.92	0.86	1.00	12	691	0	0	0	0	2
PDB_00891	-	0.93	0.87	1.00	13	933	0	0	0	0	2
PDB_00892	-	0.00	0.00	0.00	0	2556	0	0	0	0	15
PDB_00918	-	0.75	0.57	1.00	4	321	0	0	0	0	3
PDB_00923	-	1.00	1.00	1.00	6	184	0	0	0	0	0
PDB_00924	-	0.61	0.56	0.67	20	3625	10	0	10	0	16
PDB_00925	-	0.95	0.91	1.00	10	341	0	0	0	0	1
PDB_00928	-	0.79	0.63	1.00	5	295	0	0	0	0	3
PDB_00929	-	-0.02	0.00	0.00	0	762	18	0	18	0	20
PDB_00932	-	-0.01	0.00	0.00	0	810	10	2	8	0	13
PDB_00937	-	0.94	0.89	1.00	16	614	0	0	0	0	2
PDB_00943	-	-0.01	0.00	0.00	0	1420	13	1	10	2	15
PDB_00945	-	0.47	0.40	0.57	4	458	3	0	3	0	6
PDB_00960	-	-0.03	0.00	0.00	0	394	12	2	10	0	10
PDB_00961	-	0.84	0.80	0.89	8	1761	6	0	1	5	2
PDB_00964	-	0.94	0.89	1.00	8	622	3	0	0	3	1
PDB_00966	-	-0.02	0.00	0.00	0	249	4	1	3	0	7
PDB_00973	-	0.00	0.00	0.00	0	351	0	0	0	0	8
PDB_00974	-	0.00	0.00	0.00	0	378	0	0	0	0	9
PDB_00986	-	0.84	0.71	1.00	10	425	0	0	0	0	4
PDB_00987	-	0.79	0.63	1.00	10	551	0	0	0	0	6
PDB_00989	-	0.33	0.28	0.42	10	2979	14	0	14	0	26
PDB_01001	tRNA links to Rfam database...	-0.01	0.00	0.00	0	2133	12	0	12	0	18
PDB_01002	tRNA links to Rfam database...	0.95	0.90	1.00	19	2756	2	0	0	2	2
PDB_01008	-	1.00	1.00	1.00	12	583	0	0	0	0	0
PDB_01009	tRNA links to Rfam database...	0.90	0.90	0.90	19	2464	3	0	2	1	2
PDB_01017	-	-0.03	0.00	0.00	0	423	12	0	12	0	14
PDB_01019	-	-0.03	0.00	0.00	0	423	12	0	12	0	14
PDB_01020	Purine links to Rfam database...	0.86	0.74	1.00	17	2261	1	0	0	1	6
PDB_01025	-	-0.03	0.00	0.00	0	248	5	0	5	0	9
PDB_01035	-	0.88	0.77	1.00	20	1520	0	0	0	0	6
PDB_01040	-	0.30	0.30	0.33	6	1110	12	0	12	0	14
PDB_01044	-	1.00	1.00	1.00	16	930	3	0	0	3	0
PDB_01045	-	0.98	0.96	1.00	22	1203	0	0	0	0	1
PDB_01050	UnaL2 links to Rfam database...	0.92	0.85	1.00	11	619	2	0	0	2	2
PDB_01051	Telomerase-cil links to Rfam database...	0.36	0.38	0.36	5	889	9	2	7	0	8
PDB_01053	tRNA links to Rfam database...	0.97	0.94	1.00	15	1363	0	0	0	0	1
PDB_01056	-	0.74	0.56	1.00	5	248	0	0	0	0	4
PDB_01057	-	0.93	0.88	1.00	7	203	0	0	0	0	1
PDB_01059	-	0.65	0.43	1.00	3	228	0	0	0	0	4
PDB_01062	-	0.61	0.38	1.00	6	940	0	0	0	0	10
PDB_01065	-	0.62	0.40	1.00	4	227	0	0	0	0	6
PDB_01071	-	0.40	0.38	0.45	5	395	6	0	6	0	8
PDB_01073	SAM links to Rfam database...	0.55	0.47	0.64	16	4346	10	0	9	1	18
PDB_01074	-	0.26	0.24	0.29	6	2754	17	0	15	2	19
PDB_01075	-	-0.01	0.00	0.00	0	2397	18	0	18	0	32
PDB_01084	-	1.00	1.00	1.00	7	224	0	0	0	0	0
PDB_01097	-	0.86	0.75	1.00	6	204	0	0	0	0	2
PDB_01099	-	0.67	0.45	1.00	5	271	0	0	0	0	6
PDB_01100	-	-0.01	0.00	0.00	0	1471	14	0	14	0	22
PDB_01108	-	1.00	1.00	1.00	9	222	0	0	0	0	0
PDB_01114	TPP links to Rfam database...	0.51	0.37	0.71	10	2836	4	0	4	0	17
PDB_01117	-	-0.01	0.00	0.00	0	772	8	0	8	0	17
PDB_01118	-	0.92	0.84	1.00	16	1580	1	0	0	1	3
PDB_01119	-	0.66	0.64	0.69	9	617	4	2	2	0	5
PDB_01126	-	-0.01	0.00	0.00	0	3052	29	4	25	0	28
PDB_01127	-	-0.01	0.00	0.00	0	976	15	0	14	1	14
PDB_01128	-	0.92	0.85	1.00	23	2752	0	0	0	0	4
PDB_01130	-	0.26	0.25	0.29	5	1753	12	2	10	0	15
PDB_01133	-	1.00	1.00	1.00	10	341	0	0	0	0	0
PDB_01135	-	-0.02	0.00	0.00	0	397	9	1	8	0	9
PDB_01137	-	-0.02	0.00	0.00	0	321	4	2	2	0	8
PDB_01138	-	-0.02	0.00	0.00	0	318	7	0	7	0	7
PDB_01145	-	-0.02	0.00	0.00	0	766	14	2	12	0	14
PDB_01150	-	0.80	0.75	0.86	6	224	2	0	1	1	2
PDB_01152	HIV_FS2 links to Rfam database...	0.88	0.79	1.00	11	550	0	0	0	0	3
PDB_01154	-	0.90	0.82	1.00	9	397	0	0	0	0	2
PDB_01156	-	0.13	0.11	0.17	4	3805	19	1	18	0	31
PDB_01160	-	0.47	0.40	0.57	8	2066	6	2	4	0	12
PDB_01162	-	0.55	0.56	0.56	5	1531	7	0	4	3	4
PDB_01164	-	0.90	0.81	1.00	21	1519	0	0	0	0	5
PDB_01167	-	0.70	0.50	1.00	4	186	0	0	0	0	4
PDB_01168	-	-0.03	0.00	0.00	0	186	4	0	4	0	8
PDB_01178	-	0.80	0.64	1.00	9	519	0	0	0	0	5
PDB_01194	-	0.44	0.33	0.63	5	488	3	1	2	0	10
PDB_01199	-	-0.01	0.00	0.00	0	2130	15	1	14	0	24
PDB_01201	-	0.79	0.64	1.00	14	1114	0	0	0	0	8
PDB_01203	-	0.73	0.63	0.86	12	1162	2	2	0	0	7
PDB_01205	-	-0.02	0.00	0.00	0	1016	19	3	16	0	18
PDB_01208	-	-0.01	0.00	0.00	0	1167	9	0	9	0	20
PDB_01209	-	-0.01	0.00	0.00	0	1166	10	0	10	0	20
PDB_01216	-	-0.01	0.00	0.00	0	1167	9	0	9	0	20
PDB_01219	-	-0.02	0.00	0.00	0	930	16	0	16	0	20
PDB_01237	-	1.00	1.00	1.00	8	268	0	0	0	0	0
PDB_01251	-	0.87	0.77	1.00	10	315	0	0	0	0	3
PDB_01260	-	0.58	0.44	0.79	11	1816	3	0	3	0	14
PDB_01262	-	-0.03	0.00	0.00	0	187	3	0	3	0	8
PDB_01281	-	-0.03	0.00	0.00	0	366	12	0	12	0	14
PDB_01299	-	0.74	0.67	0.83	10	891	2	1	1	0	5
PDB_01313	-	-0.03	0.00	0.00	0	270	6	4	2	0	8
PDB_01325	-	0.86	0.75	1.00	9	267	0	0	0	0	3
PDB_01332	-	0.81	0.67	1.00	6	345	0	0	0	0	3
PDB_01337	-	-0.01	0.00	0.00	0	557	4	2	2	0	11
PDB_01338	-	-0.02	0.00	0.00	0	272	4	1	3	0	8
PDB_01340	-	0.79	0.63	1.00	5	295	0	0	0	0	3
RFA_00389	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	2	0	0	2	1
RFA_00390	Hammerhead_3 links to Rfam database...	0.93	0.87	1.00	13	1418	2	0	0	2	2
RFA_00391	Hammerhead_3 links to Rfam database...	0.69	0.67	0.71	10	1417	6	3	1	2	5
RFA_00396	Hammerhead_3 links to Rfam database...	0.89	0.80	1.00	12	1419	1	0	0	1	3
RFA_00402	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	0	0	0	0	1
RFA_00409	Hammerhead_3 links to Rfam database...	0.89	0.80	1.00	12	1419	1	0	0	1	3
RFA_00416	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1471	3	0	0	3	1
RFA_00420	-	1.00	1.00	1.00	15	3306	11	0	0	11	0
RFA_00425	Hammerhead_3 links to Rfam database...	0.93	0.87	1.00	13	1640	4	0	0	4	2
RFA_00427	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1471	2	0	0	2	1
RFA_00429	-	0.94	0.89	1.00	8	772	2	0	0	2	1
RFA_00433	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	2	0	0	2	1
RFA_00434	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	2	0	0	2	1
RFA_00436	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	2	0	0	2	1
RFA_00440	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1471	2	0	0	2	1
RFA_00442	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	2	0	0	2	1
RFA_00444	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1525	1	0	0	1	0
RFA_00446	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1471	2	0	0	2	1
RFA_00449	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1471	1	0	0	1	1
RFA_00582	Y_RNA links to Rfam database...	0.00	0.00	0.00	0	5983	24	4	8	12	15
RFA_00583	Y_RNA links to Rfam database...	0.51	0.53	0.50	8	4934	17	4	4	9	7
RFA_00584	Y_RNA links to Rfam database...	0.52	0.47	0.58	7	2914	16	0	5	11	8
RFA_00585	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4836	10	0	0	10	0
RFA_00586	Y_RNA links to Rfam database...	0.00	0.00	0.00	0	3908	16	4	4	8	15
RFA_00587	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4836	11	0	0	11	0
RFA_00588	Y_RNA links to Rfam database...	0.41	0.47	0.37	7	4541	19	7	5	7	8
RFA_00589	Y_RNA links to Rfam database...	0.31	0.27	0.36	4	4360	19	0	7	12	11
RFA_00590	-	0.00	0.00	0.00	0	5347	17	0	9	8	15
RFA_00594	Y_RNA links to Rfam database...	0.89	0.80	1.00	12	2763	5	0	0	5	3
RFA_00596	Y_RNA links to Rfam database...	0.00	0.00	0.00	0	5979	25	5	11	9	15
RFA_00632	HDV_ribozyme links to Rfam database...	0.36	0.36	0.37	10	4068	17	3	14	0	18
RFA_00636	HDV_ribozyme links to Rfam database...	0.58	0.57	0.59	16	3978	11	1	10	0	12
RFA_00642	Vimentin3 links to Rfam database...	0.00	0.00	0.00	0	2915	11	1	10	0	18
RFA_00643	Vimentin3 links to Rfam database...	0.45	0.39	0.54	7	2198	6	0	6	0	11
RFA_00644	Vimentin3 links to Rfam database...	0.22	0.22	0.22	4	2683	14	1	13	0	14
RFA_00645	Vimentin3 links to Rfam database...	-0.01	0.00	0.00	0	2404	11	0	11	0	18
RFA_00649	Vimentin3 links to Rfam database...	-0.01	0.00	0.00	0	2130	15	1	14	0	18
RFA_00651	Vimentin3 links to Rfam database...	0.41	0.39	0.44	7	2064	9	1	8	0	11
RFA_00653	Vimentin3 links to Rfam database...	-0.01	0.00	0.00	0	2134	11	0	11	0	18
RFA_00654	Vimentin3 links to Rfam database...	0.54	0.44	0.67	8	2403	5	1	3	1	10
RFA_00658	Hammerhead_1 links to Rfam database...	0.40	0.29	0.57	4	1121	5	0	3	2	10
RFA_00659	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	1122	8	0	6	2	14
RFA_00664	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	980	11	0	10	1	14
RFA_00667	Hammerhead_1 links to Rfam database...	0.22	0.21	0.25	3	978	10	1	8	1	11
RFA_00668	Hammerhead_1 links to Rfam database...	0.40	0.36	0.45	5	979	6	0	6	0	9
RFA_00672	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	897	6	0	6	0	13
RFA_00673	Hammerhead_1 links to Rfam database...	0.40	0.29	0.57	4	1121	4	0	3	1	10
RFA_00674	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	1118	10	0	10	0	14
RFA_00675	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	981	9	1	8	0	14
RFA_00677	Hammerhead_1 links to Rfam database...	0.64	0.57	0.73	8	979	5	0	3	2	6
RFA_00678	Hammerhead_1 links to Rfam database...	0.32	0.21	0.50	3	940	3	0	3	0	11
RFA_00680	Hammerhead_1 links to Rfam database...	0.69	0.64	0.75	9	1116	6	0	3	3	5
RFA_00683	-	0.33	0.29	0.40	4	1025	6	0	6	0	10
RFA_00684	Hammerhead_1 links to Rfam database...	0.75	0.57	1.00	8	982	1	0	0	1	6
RFA_00685	Hammerhead_1 links to Rfam database...	0.35	0.29	0.44	4	981	6	0	5	1	10
RFA_00695	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	7014	26	2	5	19	14
RFA_00703	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	4270	22	2	6	14	14
RFA_00704	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	983	8	0	7	1	14
RFA_00705	Hammerhead_1 links to Rfam database...	0.69	0.64	0.75	9	1023	4	0	3	1	5
RFA_00706	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	1024	11	2	9	0	14
RFA_00707	Hammerhead_1 links to Rfam database...	0.31	0.29	0.36	4	1024	7	0	7	0	10
RFA_00708	Hammerhead_1 links to Rfam database...	0.40	0.29	0.57	4	1028	4	0	3	1	10
RFA_00709	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	985	6	0	5	1	14
RFA_00710	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	980	10	0	10	0	14
RFA_00711	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	1026	9	0	9	0	14
RFA_00715	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	937	9	0	9	0	14
RFA_00716	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	936	10	0	10	0	14
RFA_00717	Hammerhead_1 links to Rfam database...	0.39	0.36	0.45	5	892	6	0	6	0	9
RFA_00720	-	0.46	0.43	0.50	6	1164	6	1	5	0	8
RFA_00721	-	0.37	0.29	0.50	4	1168	4	0	4	0	10
RFA_00730	s2m links to Rfam database...	0.64	0.42	1.00	5	898	1	0	0	1	7
RFA_00731	s2m links to Rfam database...	0.64	0.42	1.00	5	898	1	0	0	1	7
RFA_00733	s2m links to Rfam database...	0.64	0.42	1.00	5	898	1	0	0	1	7
RFA_00734	s2m links to Rfam database...	0.34	0.33	0.36	4	892	7	2	5	0	8
RFA_00736	s2m links to Rfam database...	0.64	0.42	1.00	5	898	1	0	0	1	7
RFA_00737	s2m links to Rfam database...	0.64	0.42	1.00	5	898	1	0	0	1	7
RFA_00745	s2m links to Rfam database...	-0.01	0.00	0.00	0	941	5	1	4	0	12
RFA_00749	s2m links to Rfam database...	0.64	0.42	1.00	5	898	1	0	0	1	7
RFA_00758	s2m links to Rfam database...	-0.01	0.00	0.00	0	898	5	0	5	0	12
RFA_00762	s2m links to Rfam database...	0.39	0.42	0.38	5	890	8	2	6	0	7
RFA_00763	s2m links to Rfam database...	0.64	0.42	1.00	5	898	0	0	0	0	7
RFA_00764	s2m links to Rfam database...	0.64	0.42	1.00	5	898	1	0	0	1	7
RFA_00765	s2m links to Rfam database...	0.64	0.42	1.00	5	898	1	0	0	1	7
RFA_00767	Corona_pk3 links to Rfam database...	-0.01	0.00	0.00	0	1878	13	1	12	0	18
RFA_00768	Corona_pk3 links to Rfam database...	-0.01	0.00	0.00	0	1875	16	1	15	0	18
RFA_00769	Corona_pk3 links to Rfam database...	0.50	0.50	0.50	9	1935	9	4	5	0	9
RFA_00770	Corona_pk3 links to Rfam database...	-0.01	0.00	0.00	0	2003	15	2	11	2	18
RFA_00773	Corona_pk3 links to Rfam database...	-0.01	0.00	0.00	0	1936	19	1	16	2	18
RFA_00779	Corona_pk3 links to Rfam database...	0.65	0.56	0.77	10	1940	3	2	1	0	8
RFA_00781	Gammaretro_CES links to Rfam database...	0.56	0.53	0.59	17	5021	12	1	11	0	15
RFA_00786	Gammaretro_CES links to Rfam database...	0.39	0.34	0.44	11	5025	14	1	13	0	21
RFA_00791	Gammaretro_CES links to Rfam database...	0.41	0.34	0.50	11	5129	11	1	10	0	21
RFA_00792	Gammaretro_CES links to Rfam database...	0.57	0.53	0.61	17	5022	11	0	11	0	15
RFA_00801	Gammaretro_CES links to Rfam database...	0.53	0.50	0.57	16	5022	12	2	10	0	16
RFA_00809	RydC links to Rfam database...	0.40	0.38	0.43	6	2131	8	1	7	0	10
SPR_00007	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00009	tRNA links to Rfam database...	0.97	0.95	1.00	19	2831	0	0	0	0	1
SPR_00010	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00012	tRNA links to Rfam database...	0.97	0.95	1.00	19	2831	0	0	0	0	1
SPR_00013	tRNA links to Rfam database...	0.97	0.95	1.00	19	2831	0	0	0	0	1
SPR_00016	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00017	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00020	tRNA links to Rfam database...	0.82	0.80	0.84	16	2682	4	1	2	1	4
SPR_00022	tRNA links to Rfam database...	0.95	0.90	1.00	19	2907	0	0	0	0	2
SPR_00023	tRNA links to Rfam database...	0.79	0.81	0.77	17	2828	6	2	3	1	4
SPR_00025	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	1	0	0	1	0
SPR_00026	tRNA links to Rfam database...	0.73	0.76	0.70	16	2903	7	0	7	0	5
SPR_00027	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00029	tRNA links to Rfam database...	0.97	0.95	1.00	19	2609	3	0	0	3	1
SPR_00030	-	0.70	0.67	0.74	14	2466	5	0	5	0	7
SPR_00032	tRNA links to Rfam database...	0.98	0.95	1.00	20	2536	1	0	0	1	1
SPR_00033	tRNA links to Rfam database...	0.98	0.95	1.00	20	2608	0	0	0	0	1
SPR_00034	-	0.98	0.95	1.00	20	2465	1	0	0	1	1
SPR_00036	tRNA links to Rfam database...	1.00	1.00	1.00	20	2755	0	0	0	0	0
SPR_00044	tRNA links to Rfam database...	0.82	0.80	0.84	16	2831	3	2	1	0	4
SPR_00045	tRNA links to Rfam database...	0.93	0.91	0.95	20	2829	1	0	1	0	2
SPR_00060	tRNA links to Rfam database...	0.81	0.81	0.81	17	2754	4	1	3	0	4
SPR_00064	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00065	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00066	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00068	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00070	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00074	tRNA links to Rfam database...	0.82	0.80	0.84	16	2831	4	3	0	1	4
SPR_00078	-	0.56	0.60	0.53	9	1874	9	1	7	1	6
SPR_00079	tRNA links to Rfam database...	0.65	0.58	0.73	11	2470	5	0	4	1	8
SPR_00080	tRNA links to Rfam database...	0.83	0.68	1.00	13	2402	0	0	0	0	6
SPR_00086	tRNA links to Rfam database...	0.75	0.71	0.79	15	2831	4	2	2	0	6
SPR_00087	tRNA links to Rfam database...	0.95	0.90	1.00	18	2832	0	0	0	0	2
SPR_00088	tRNA links to Rfam database...	0.95	0.90	1.00	18	2832	0	0	0	0	2
SPR_00089	tRNA links to Rfam database...	0.95	0.90	1.00	18	2832	0	0	0	0	2
SPR_00090	tRNA links to Rfam database...	0.95	0.90	1.00	18	2832	0	0	0	0	2
SPR_00091	tRNA links to Rfam database...	0.95	0.90	1.00	18	2832	0	0	0	0	2
SPR_00095	tRNA links to Rfam database...	0.75	0.71	0.79	15	2831	4	2	2	0	6
SPR_00111	tRNA links to Rfam database...	0.98	0.95	1.00	20	2681	0	0	0	0	1
SPR_00112	tRNA links to Rfam database...	0.78	0.76	0.80	16	2681	5	3	1	1	5
SPR_00113	tRNA links to Rfam database...	0.82	0.80	0.84	16	2756	5	0	3	2	4
SPR_00114	tRNA links to Rfam database...	0.98	0.95	1.00	20	2681	1	0	0	1	1
SPR_00115	tRNA links to Rfam database...	0.98	0.95	1.00	20	2681	0	0	0	0	1
SPR_00116	tRNA links to Rfam database...	0.98	0.95	1.00	20	2681	1	0	0	1	1
SPR_00117	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	1	0	0	1	1
SPR_00121	tRNA links to Rfam database...	0.95	0.90	1.00	19	2756	2	0	0	2	2
SPR_00124	tRNA links to Rfam database...	0.95	0.91	1.00	20	2536	1	0	0	1	2
SPR_00126	-	0.35	0.35	0.37	7	2061	12	3	9	0	13
SPR_00127	-	-0.01	0.00	0.00	0	2397	19	3	15	1	18
SPR_00137	tRNA links to Rfam database...	0.83	0.81	0.85	17	2906	8	0	3	5	4
SPR_00138	tRNA links to Rfam database...	0.55	0.55	0.55	11	2906	10	4	5	1	9
SPR_00139	tRNA links to Rfam database...	0.98	0.95	1.00	20	2906	1	0	0	1	1
SPR_00141	tRNA links to Rfam database...	0.97	0.95	1.00	19	2756	1	0	0	1	1
SPR_00142	-	0.67	0.63	0.71	12	2611	6	2	3	1	7
SPR_00153	tRNA links to Rfam database...	0.98	0.95	1.00	20	2906	2	0	0	2	1
SPR_00155	tRNA links to Rfam database...	0.98	0.95	1.00	20	2906	0	0	0	0	1
SPR_00156	tRNA links to Rfam database...	0.98	0.95	1.00	20	2906	2	0	0	2	1
SPR_00164	tRNA links to Rfam database...	0.98	0.95	1.00	20	2906	0	0	0	0	1
SPR_00166	-	0.52	0.53	0.53	10	2537	9	1	8	0	9
SPR_00167	tRNA links to Rfam database...	0.72	0.65	0.81	13	2540	4	1	2	1	7
SPR_00176	tRNA links to Rfam database...	0.53	0.55	0.52	11	2829	10	5	5	0	9
SPR_00177	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00178	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00183	-	0.44	0.40	0.50	8	2834	8	0	8	0	12
SPR_00191	tRNA links to Rfam database...	0.51	0.52	0.50	11	2828	12	3	8	1	10
SPR_00200	tRNA links to Rfam database...	0.53	0.52	0.55	11	2830	10	3	6	1	10
SPR_00209	tRNA links to Rfam database...	0.82	0.84	0.80	16	3550	4	3	1	0	3
SPR_00213	tRNA links to Rfam database...	0.59	0.62	0.57	13	3805	12	1	9	2	8
SPR_00215	tRNA links to Rfam database...	0.70	0.65	0.76	13	3553	8	2	2	4	7
SPR_00218	tRNA links to Rfam database...	0.82	0.80	0.84	16	3722	9	0	3	6	4
SPR_00219	tRNA links to Rfam database...	0.87	0.75	1.00	15	3726	6	0	0	6	5
SPR_00220	tRNA links to Rfam database...	0.74	0.70	0.78	14	3723	8	0	4	4	6
SPR_00221	tRNA links to Rfam database...	0.74	0.67	0.82	14	3724	7	0	3	4	7
SPR_00223	tRNA links to Rfam database...	0.67	0.65	0.68	13	3551	9	3	3	3	7
SPR_00224	tRNA links to Rfam database...	0.53	0.55	0.52	11	3720	14	4	6	4	9
SPR_00225	tRNA links to Rfam database...	0.77	0.71	0.83	15	3723	7	0	3	4	6
SPR_00226	tRNA links to Rfam database...	0.50	0.52	0.48	11	3632	12	1	11	0	10
SPR_00227	tRNA links to Rfam database...	0.76	0.76	0.76	16	3465	8	0	5	3	5
SPR_00228	tRNA links to Rfam database...	0.95	0.90	1.00	18	3810	1	0	0	1	2
SPR_00229	tRNA links to Rfam database...	0.56	0.52	0.61	11	3385	9	0	7	2	10
SPR_00230	tRNA links to Rfam database...	0.50	0.48	0.53	10	3551	12	1	8	3	11
SPR_00235	tRNA links to Rfam database...	0.44	0.43	0.45	9	3721	15	1	10	4	12
SPR_00236	tRNA links to Rfam database...	0.44	0.40	0.50	8	3554	13	1	7	5	12
SPR_00246	tRNA links to Rfam database...	1.00	1.00	1.00	20	2681	2	0	0	2	0
SPR_00263	tRNA links to Rfam database...	0.62	0.62	0.62	13	3549	11	1	7	3	8
SPR_00273	tRNA links to Rfam database...	0.76	0.76	0.76	16	2829	5	0	5	0	5
SPR_00276	tRNA links to Rfam database...	0.98	0.95	1.00	20	2906	0	0	0	0	1
SPR_00279	tRNA links to Rfam database...	0.98	0.95	1.00	20	2906	0	0	0	0	1
SPR_00281	-	0.58	0.47	0.73	8	2005	3	3	0	0	9
SPR_00289	tRNA links to Rfam database...	0.77	0.75	0.79	15	2907	6	2	2	2	5
SPR_00294	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00295	tRNA links to Rfam database...	0.95	0.90	1.00	19	2756	1	0	0	1	2
SPR_00297	tRNA links to Rfam database...	0.98	0.95	1.00	20	2755	0	0	0	0	1
SPR_00298	tRNA links to Rfam database...	0.68	0.65	0.72	13	2757	5	0	5	0	7
SPR_00309	tRNA links to Rfam database...	0.76	0.76	0.76	16	2905	6	2	3	1	5
SPR_00314	tRNA links to Rfam database...	0.75	0.71	0.79	15	2907	4	2	2	0	6
SPR_00315	tRNA links to Rfam database...	0.76	0.81	0.71	17	2902	8	0	7	1	4
SPR_00316	tRNA links to Rfam database...	0.98	0.95	1.00	20	2906	1	0	0	1	1
SPR_00317	tRNA links to Rfam database...	0.75	0.75	0.75	15	2906	5	1	4	0	5
SPR_00318	tRNA links to Rfam database...	0.98	0.95	1.00	20	2906	1	0	0	1	1
SPR_00320	tRNA links to Rfam database...	0.51	0.47	0.56	9	2759	8	2	5	1	10
SPR_00327	tRNA links to Rfam database...	0.75	0.71	0.79	15	2984	4	0	4	0	6
SPR_00329	tRNA links to Rfam database...	0.86	0.86	0.86	18	2829	5	0	3	2	3
SPR_00331	tRNA links to Rfam database...	0.82	0.80	0.84	16	2756	3	2	1	0	4
SPR_00333	tRNA links to Rfam database...	0.63	0.62	0.65	13	2755	7	3	4	0	8
SPR_00339	tRNA links to Rfam database...	0.93	0.90	0.95	19	2755	1	0	1	0	2
SPR_00353	tRNA links to Rfam database...	0.75	0.71	0.79	15	2831	4	2	2	0	6
SPR_00356	tRNA links to Rfam database...	0.98	0.95	1.00	20	2755	0	0	0	0	1
SPR_00357	tRNA links to Rfam database...	0.98	0.95	1.00	20	2906	0	0	0	0	1
SPR_00358	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00359	tRNA links to Rfam database...	0.95	0.91	1.00	20	2906	0	0	0	0	2
SPR_00360	tRNA links to Rfam database...	0.78	0.73	0.84	16	2682	4	0	3	1	6
SPR_00362	-	0.50	0.54	0.47	7	1416	8	4	4	0	6
SPR_00363	-	0.21	0.20	0.23	3	1583	10	1	9	0	12
SPR_00364	-	0.89	0.80	1.00	16	2195	0	0	0	0	4
SPR_00365	-	0.71	0.73	0.70	16	2533	7	1	6	0	6
SPR_00366	-	0.70	0.70	0.70	14	2536	6	1	5	0	6
SPR_00367	-	0.47	0.45	0.50	10	2465	10	2	8	0	12
SPR_00369	tRNA links to Rfam database...	0.98	0.95	1.00	20	2755	0	0	0	0	1
SPR_00370	tRNA links to Rfam database...	0.19	0.19	0.21	4	2756	15	2	13	0	17
SPR_00373	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00374	tRNA links to Rfam database...	0.65	0.67	0.64	14	2828	8	3	5	0	7
SPR_00385	tRNA links to Rfam database...	0.53	0.55	0.52	11	4257	15	1	9	5	9
SPR_00386	tRNA links to Rfam database...	0.79	0.75	0.83	15	4168	7	1	2	4	5
SPR_00388	tRNA links to Rfam database...	0.90	0.81	1.00	17	4169	6	0	0	6	4
SPR_00389	tRNA links to Rfam database...	0.55	0.55	0.55	11	3985	15	1	8	6	9
SPR_00390	tRNA links to Rfam database...	0.28	0.29	0.27	6	4256	23	1	15	7	15
SPR_00391	tRNA links to Rfam database...	0.62	0.57	0.67	12	3810	12	0	6	6	9
SPR_00393	tRNA links to Rfam database...	0.54	0.50	0.59	10	3811	12	1	6	5	10
SPR_00394	tRNA links to Rfam database...	0.75	0.71	0.79	15	3636	9	0	4	5	6
SPR_00395	tRNA links to Rfam database...	0.78	0.76	0.80	16	3985	9	1	3	5	5
SPR_00398	-	-0.01	0.00	0.00	0	2194	19	2	15	2	13
SPR_00399	-	0.31	0.31	0.31	5	2469	12	5	6	1	11
SPR_00402	tRNA links to Rfam database...	0.78	0.76	0.80	16	2536	5	0	4	1	5
SPR_00412	tRNA links to Rfam database...	0.50	0.48	0.53	10	3636	12	2	7	3	11
SPR_00414	tRNA links to Rfam database...	0.87	0.76	1.00	16	3554	3	0	0	3	5
SPR_00415	tRNA links to Rfam database...	0.60	0.52	0.69	11	3554	8	3	2	3	10
SPR_00416	tRNA links to Rfam database...	0.53	0.52	0.55	11	3550	12	2	7	3	10
SPR_00417	tRNA links to Rfam database...	0.65	0.59	0.72	13	3552	8	0	5	3	9
SPR_00418	tRNA links to Rfam database...	0.66	0.68	0.65	15	3547	8	3	5	0	7
SPR_00426	tRNA links to Rfam database...	0.76	0.76	0.76	16	2982	8	0	5	3	5
SPR_00434	tRNA links to Rfam database...	0.71	0.71	0.71	15	2829	6	3	3	0	6
SPR_00435	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00436	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	1	0	0	1	1
SPR_00437	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	1	0	0	1	0
SPR_00438	tRNA links to Rfam database...	0.98	0.95	1.00	20	2755	0	0	0	0	1
SPR_00439	tRNA links to Rfam database...	0.97	0.95	1.00	19	2682	1	0	0	1	1
SPR_00445	tRNA links to Rfam database...	0.74	0.80	0.70	16	2980	7	1	6	0	4
SPR_00452	tRNA links to Rfam database...	0.73	0.76	0.70	16	2827	7	3	4	0	5
SPR_00455	tRNA links to Rfam database...	0.70	0.71	0.68	15	2828	7	0	7	0	6
SPR_00456	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	1	0	0	1	0
SPR_00458	tRNA links to Rfam database...	0.68	0.65	0.72	13	2832	5	0	5	0	7
SPR_00459	tRNA links to Rfam database...	0.50	0.45	0.56	9	2759	7	1	6	0	11
SPR_00461	tRNA links to Rfam database...	0.47	0.47	0.47	9	2537	11	1	9	1	10
SPR_00462	tRNA links to Rfam database...	0.76	0.74	0.78	14	2397	5	3	1	1	5
SPR_00467	tRNA links to Rfam database...	0.80	0.80	0.80	16	2830	4	0	4	0	4
SPR_00476	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	0	0	0	0	0
SPR_00478	tRNA links to Rfam database...	0.76	0.76	0.76	16	2754	5	0	5	0	5
SPR_00479	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00481	tRNA links to Rfam database...	0.95	0.90	1.00	19	2756	0	0	0	0	2
SPR_00482	tRNA links to Rfam database...	0.98	0.95	1.00	20	2681	0	0	0	0	1
SPR_00483	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00487	tRNA links to Rfam database...	0.95	0.91	1.00	20	2681	0	0	0	0	2
SPR_00489	tRNA links to Rfam database...	0.98	0.95	1.00	20	2681	1	0	0	1	1
SPR_00493	tRNA links to Rfam database...	0.71	0.68	0.75	15	2755	5	2	3	0	7
SPR_00496	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	0	0	0	0	0
SPR_00497	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	0	0	0	0	0
SPR_00498	tRNA links to Rfam database...	0.80	0.80	0.80	16	2983	5	0	4	1	4
SPR_00502	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00504	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	0	0	0	0	0
SPR_00505	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00506	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00509	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00512	tRNA links to Rfam database...	0.97	0.95	1.00	19	2907	0	0	0	0	1
SPR_00513	tRNA links to Rfam database...	0.97	0.95	1.00	19	2907	0	0	0	0	1
SPR_00517	tRNA links to Rfam database...	0.95	0.90	1.00	18	2832	1	0	0	1	2
SPR_00518	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00519	tRNA links to Rfam database...	0.77	0.71	0.83	15	2538	4	0	3	1	6
SPR_00520	tRNA links to Rfam database...	0.78	0.78	0.78	14	2538	4	3	1	0	4
SPR_00533	tRNA links to Rfam database...	0.78	0.76	0.80	16	2755	4	3	1	0	5
SPR_00541	tRNA links to Rfam database...	0.35	0.33	0.37	7	3467	13	1	11	1	14
SPR_00542	tRNA links to Rfam database...	0.49	0.52	0.46	11	3546	13	4	9	0	10
SPR_00548	tRNA links to Rfam database...	0.79	0.81	0.77	17	3381	5	1	4	0	4
SPR_00550	tRNA links to Rfam database...	0.88	0.82	0.95	18	3809	5	0	1	4	4
SPR_00552	tRNA links to Rfam database...	0.66	0.68	0.65	13	2681	8	3	4	1	6
SPR_00557	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00561	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00590	tRNA links to Rfam database...	0.83	0.85	0.81	17	2982	5	1	3	1	3
SPR_00593	tRNA links to Rfam database...	0.43	0.37	0.50	7	2761	7	1	6	0	12
SPR_00595	tRNA links to Rfam database...	0.75	0.71	0.79	15	2756	4	2	2	0	6
SPR_00598	tRNA links to Rfam database...	0.83	0.81	0.85	17	2983	4	1	2	1	4
SPR_00610	tRNA links to Rfam database...	0.45	0.43	0.47	9	2537	10	4	6	0	12
SPR_00620	tRNA links to Rfam database...	0.98	0.95	1.00	20	2983	3	0	0	3	1
SPR_00629	-	0.52	0.47	0.58	7	1879	8	0	5	3	8
SPR_00632	tRNA links to Rfam database...	0.85	0.85	0.85	17	2536	3	2	1	0	3
SPR_00633	tRNA links to Rfam database...	0.92	0.85	1.00	17	2539	0	0	0	0	3
SPR_00721	tRNA links to Rfam database...	0.68	0.67	0.70	14	2906	6	2	4	0	7
SPR_00722	tRNA links to Rfam database...	0.76	0.80	0.73	16	2904	6	4	2	0	4
SPR_00750	tRNA links to Rfam database...	0.31	0.26	0.38	5	2543	9	0	8	1	14
SPR_00758	tRNA links to Rfam database...	0.74	0.76	0.73	16	2981	9	0	6	3	5
SPR_00760	tRNA links to Rfam database...	0.88	0.90	0.86	19	3548	5	0	3	2	2
SPR_00768	-	0.53	0.50	0.56	9	2064	8	0	7	1	9
SPR_00777	tRNA links to Rfam database...	0.56	0.55	0.58	11	2609	9	2	6	1	9
SPR_00810	tRNA links to Rfam database...	0.74	0.68	0.81	13	3554	8	0	3	5	6
SPR_00816	tRNA links to Rfam database...	0.32	0.35	0.29	7	3462	20	5	12	3	13
SPR_00832	-	0.69	0.67	0.71	10	1639	4	1	3	0	5
SPR_00867	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00868	tRNA links to Rfam database...	0.98	0.95	1.00	20	2906	0	0	0	0	1
SPR_00882	tRNA links to Rfam database...	0.97	0.95	1.00	19	2609	0	0	0	0	1
SPR_00912	tRNA links to Rfam database...	0.95	0.90	1.00	19	2984	4	0	0	4	2
SPR_00913	tRNA links to Rfam database...	0.32	0.33	0.32	7	2981	15	4	11	0	14
SPR_00932	tRNA links to Rfam database...	0.93	0.90	0.95	19	2830	4	0	1	3	2
SPR_00938	-	0.34	0.33	0.36	5	1639	9	5	4	0	10
SPR_00943	tRNA links to Rfam database...	0.85	0.85	0.85	17	2536	3	0	3	0	3
SPR_00957	tRNA links to Rfam database...	1.00	1.00	1.00	21	2982	0	0	0	0	0
SPR_01040	tRNA links to Rfam database...	0.98	0.95	1.00	20	2755	0	0	0	0	1
SPR_01051	tRNA links to Rfam database...	0.98	0.95	1.00	20	2536	0	0	0	0	1
SPR_01088	tRNA links to Rfam database...	0.98	0.95	1.00	20	2906	0	0	0	0	1
SPR_01095	tRNA links to Rfam database...	0.76	0.76	0.76	16	2829	5	0	5	0	5
SPR_01103	-	0.97	0.93	1.00	14	1756	1	0	0	1	1
SPR_01106	tRNA links to Rfam database...	0.98	0.95	1.00	20	2536	1	0	0	1	1
SPR_01117	tRNA links to Rfam database...	1.00	1.00	1.00	21	2982	1	0	0	1	0
SPR_01143	tRNA links to Rfam database...	0.76	0.76	0.76	16	2535	5	3	2	0	5
SPR_01157	tRNA links to Rfam database...	0.98	0.95	1.00	20	2755	0	0	0	0	1
SRP_00005	-	-0.01	0.00	0.00	0	3984	21	2	19	0	24
SRP_00008	Bacteria_small_SRP links to Rfam database...	0.79	0.76	0.83	19	2903	4	1	3	0	6
SRP_00020	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	5537	28	3	25	0	33
SRP_00038	Bacteria_small_SRP links to Rfam database...	0.28	0.27	0.29	9	5019	22	2	20	0	24
SRP_00040	Bacteria_small_SRP links to Rfam database...	0.29	0.26	0.33	8	5541	16	2	14	0	23
SRP_00042	Bacteria_small_SRP links to Rfam database...	0.37	0.32	0.44	8	3987	11	1	9	1	17
SRP_00043	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	5023	27	7	20	0	29
SRP_00044	Bacteria_small_SRP links to Rfam database...	0.15	0.16	0.16	5	6074	26	7	19	0	27
SRP_00046	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	4730	23	0	23	0	32
SRP_00051	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	5435	25	6	19	0	30
SRP_00054	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	5542	23	2	21	0	32
SRP_00056	Bacteria_small_SRP links to Rfam database...	0.36	0.30	0.44	11	6416	14	2	12	0	26
SRP_00057	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6304	24	4	20	0	35
SRP_00058	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	5748	30	3	27	0	34
SRP_00072	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6303	25	1	24	0	29
SRP_00075	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	5539	26	2	24	0	34
SRP_00081	Bacteria_small_SRP links to Rfam database...	0.29	0.26	0.33	8	5541	16	3	13	0	23
SRP_00083	-	0.49	0.43	0.57	13	4828	10	0	10	0	17
SRP_00084	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	5437	23	1	22	0	34
SRP_00094	Bacteria_small_SRP links to Rfam database...	0.27	0.29	0.26	7	4068	20	4	16	0	17
SRP_00095	Bacteria_small_SRP links to Rfam database...	0.26	0.28	0.26	7	3978	20	2	18	0	18
SRP_00101	-	0.61	0.56	0.67	14	3549	8	1	6	1	11
SRP_00105	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	5533	32	2	30	0	34
SRP_00106	Bacteria_large_SRP links to Rfam database...	0.20	0.20	0.21	5	5229	22	6	13	3	20
SRP_00107	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	3634	23	4	17	2	19
SRP_00121	Bacteria_small_SRP links to Rfam database...	0.41	0.36	0.47	9	4259	10	1	9	0	16
SRP_00128	Bacteria_small_SRP links to Rfam database...	0.17	0.17	0.18	6	6753	27	1	26	0	30
SRP_00132	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	4828	24	2	21	1	29
SRP_00134	Bacteria_large_SRP links to Rfam database...	0.16	0.17	0.16	5	5964	29	4	22	3	24
SRP_00137	Bacteria_small_SRP links to Rfam database...	0.39	0.40	0.38	10	4160	16	4	12	0	15
SRP_00138	-	-0.01	0.00	0.00	0	3985	20	5	15	0	27
SRP_00139	-	0.25	0.25	0.25	3	2133	9	1	8	0	9
SRP_00141	Bacteria_small_SRP links to Rfam database...	0.55	0.49	0.63	20	6296	12	2	10	0	21
SRP_00145	Bacteria_small_SRP links to Rfam database...	0.30	0.28	0.34	11	6296	21	2	19	0	29
SRP_00146	Bacteria_small_SRP links to Rfam database...	0.36	0.33	0.40	12	5223	18	2	16	0	24
SRP_00161	Bacteria_small_SRP links to Rfam database...	0.40	0.41	0.41	9	2828	13	3	10	0	13
SRP_00162	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	2904	22	3	19	0	23
SRP_00163	Bacteria_small_SRP links to Rfam database...	0.29	0.27	0.32	7	3464	15	3	12	0	19
SRP_00164	Bacteria_small_SRP links to Rfam database...	0.15	0.14	0.16	5	6872	26	3	23	0	30
SRP_00170	Bacteria_small_SRP links to Rfam database...	0.37	0.36	0.39	9	4072	15	0	14	1	16
SRP_00193	-	0.20	0.19	0.21	7	6870	26	0	26	0	29
SRP_00194	Bacteria_small_SRP links to Rfam database...	0.33	0.33	0.33	7	3219	14	3	11	0	14
SRP_00196	-	0.36	0.36	0.37	10	4629	18	1	16	1	18
SRP_00200	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6874	29	2	27	0	36
SRP_00209	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	4633	23	4	19	0	27
SRP_00213	Bacteria_small_SRP links to Rfam database...	0.39	0.40	0.38	10	4160	16	2	14	0	15
SRP_00214	-	0.31	0.29	0.33	7	3060	14	0	14	0	17
SRP_00215	Bacteria_small_SRP links to Rfam database...	0.51	0.40	0.67	10	3225	5	1	4	0	15
SRP_00216	Bacteria_small_SRP links to Rfam database...	0.36	0.33	0.41	9	3381	13	2	11	0	18
SRP_00217	Bacteria_small_SRP links to Rfam database...	0.32	0.29	0.37	7	3302	13	1	11	1	17
SRP_00219	Bacteria_small_SRP links to Rfam database...	0.50	0.43	0.59	10	3304	8	1	6	1	13
SRP_00221	-	0.33	0.33	0.33	7	3382	14	2	12	0	14
SRP_00222	Bacteria_small_SRP links to Rfam database...	0.49	0.48	0.50	12	3057	13	3	9	1	13
SRP_00223	-	0.21	0.20	0.24	4	3386	13	4	9	0	16
SRP_00227	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	5127	24	2	22	0	31
SRP_00229	Bacteria_small_SRP links to Rfam database...	0.36	0.37	0.36	10	5225	18	5	13	0	17
SRP_00231	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	5435	25	4	21	0	34
SRP_00233	Bacteria_small_SRP links to Rfam database...	0.63	0.61	0.67	20	5121	10	2	8	0	13
SRP_00235	-	-0.01	0.00	0.00	0	5027	23	0	23	0	33
SRP_00243	Bacteria_small_SRP links to Rfam database...	0.45	0.39	0.52	12	5128	11	1	10	0	19
SRP_00244	Bacteria_small_SRP links to Rfam database...	0.12	0.10	0.16	4	6878	21	3	18	0	35
SRP_00250	Bacteria_small_SRP links to Rfam database...	0.11	0.11	0.12	4	6753	29	2	27	0	32
SRP_00251	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6993	28	2	26	0	36
SRP_00256	-	0.13	0.14	0.13	3	4254	21	5	16	0	19
SRP_00266	Bacteria_small_SRP links to Rfam database...	0.32	0.31	0.33	9	4629	18	2	16	0	20
SRP_00268	Bacteria_small_SRP links to Rfam database...	0.41	0.37	0.45	10	4164	12	3	9	0	17
SRP_00269	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	5022	28	4	24	0	33
SRP_00270	Bacteria_small_SRP links to Rfam database...	0.49	0.45	0.54	14	4630	12	3	9	0	17
SRP_00271	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	3222	18	3	15	0	24
SRP_00273	Bacteria_small_SRP links to Rfam database...	0.40	0.38	0.44	15	6752	19	3	16	0	25
SRP_00274	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	6871	32	2	30	0	38
SRP_00284	-	0.38	0.34	0.43	10	3718	13	2	11	0	19
SRP_00285	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	3719	22	2	20	0	30
SRP_00295	Bacteria_small_SRP links to Rfam database...	0.67	0.61	0.74	23	6872	8	3	5	0	15
SRP_00303	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6641	29	3	26	0	32
SRP_00310	Bacteria_small_SRP links to Rfam database...	0.19	0.17	0.22	4	2908	14	3	11	0	19
SRP_00312	Bacteria_small_SRP links to Rfam database...	0.37	0.37	0.38	10	4160	16	2	14	0	17
SRP_00315	Bacteria_small_SRP links to Rfam database...	0.18	0.17	0.20	4	2906	16	1	15	0	19
SRP_00318	Bacteria_small_SRP links to Rfam database...	0.19	0.17	0.22	4	2985	14	1	13	0	19
SRP_00324	Bacteria_small_SRP links to Rfam database...	0.13	0.14	0.14	4	5327	25	5	20	0	25
SRP_00325	Bacteria_small_SRP links to Rfam database...	0.63	0.61	0.67	20	4341	10	2	8	0	13
SRP_00326	Bacteria_small_SRP links to Rfam database...	0.24	0.23	0.26	7	5023	20	3	17	0	24
SRP_00333	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	5127	24	1	23	0	34
SRP_00338	Bacteria_small_SRP links to Rfam database...	0.24	0.22	0.28	8	5431	21	2	19	0	28
SRP_00341	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	4731	22	2	20	0	31
SRP_00342	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	3993	12	2	10	0	25
SRP_00350	Bacteria_small_SRP links to Rfam database...	0.37	0.33	0.43	9	3895	13	0	12	1	18
SRP_00356	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	5031	19	2	17	0	30
SRP_00357	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	5330	26	1	25	0	36
SRP_00358	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6302	26	2	24	0	35
SRP_00363	Bacteria_small_SRP links to Rfam database...	0.49	0.40	0.60	12	4733	10	2	6	2	18
SRP_00365	Bacteria_small_SRP links to Rfam database...	0.35	0.30	0.42	8	3384	11	2	9	0	19
SRP_00367	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6761	25	1	24	0	35
SRP_00369	Bacteria_small_SRP links to Rfam database...	0.47	0.43	0.52	15	5749	14	1	13	0	20
SRP_00383	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	3220	20	2	18	0	24
TMR_00272	-	0.44	0.39	0.50	12	5127	12	0	12	0	19

^top

Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.

Table of contents:

Overview

Performance plots

Performance of Cylofold - scored higher in this pairwise comparison

1. Total counts & total scores for Cylofold

2. Individual counts for Cylofold [ download as .csv ]

Performance of Vsfold4 - scored lower in this pairwise comparison

1. Total counts & total scores for Vsfold4

2. Individual counts for Vsfold4 [ download as .csv ]