CompaRNA - on-line benchmarks of RNA structure prediction methods

Laboratory of Structural Bioinformatics @ Adam Mickiewicz University in Poznan

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Overview

Metric	McQFold		Vsfold5
MCC	0.583	>	0.477
Average MCC ± 95% Confidence Intervals	0.617 ± 0.022	>	0.521 ± 0.024
Sensitivity	0.557	>	0.450
Positive Predictive Value	0.616	>	0.512
Total TP	10895	>	8806
Total TN	2892296	<	2892791
Total FP	7739	<	9175
Total FP CONTRA	1039	<	1268
Total FP INCONS	5765	<	7130
Total FP COMP	935	>	777
Total FN	8653	<	10742
P-value	3.56938820447e-08

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Performance plots

Comparison of performance of McQFold and Vsfold5. Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data (individual counts for McQFold and Vsfold5).
Average Matthews Correlation Coefficients (MCC) with 95% confidence intervals (CIs) were plotted for different RNA families, for which at least 3 members were present in the benchmarking dataset. 'n' denotes the number of MCCs used to calculate the average and CI. See tables below for raw data (individual counts for McQFold and Vsfold5).
Comparison of average Matthews Correlation Coefficients (MCCs) for McQFold and Vsfold5. The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data (individual counts for McQFold and Vsfold5).

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Performance of McQFold - scored higher in this pairwise comparison

1. Total counts & total scores for McQFold

Total Base Pair Counts
Total TP	10895
Total TN	2892296
Total FP	7739
Total FP CONTRA	1039
Total FP INCONS	5765
Total FP COMP	935
Total FN	8653

Total Scores
MCC	0.583
Average MCC ± 95% Confidence Intervals	0.617 ± 0.022
Sensitivity	0.557
Positive Predictive Value	0.616
Nr of predictions	882

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2. Individual counts for McQFold [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00051	-	0.76	0.76	0.76	31	19069	25	3	7	15	10
ASE_00251	RNaseP_nuc links to Rfam database...	1.00	1.00	1.00	43	17723	21	0	0	21	0
CRW_00548	5S_rRNA links to Rfam database...	0.39	0.37	0.42	14	7348	19	2	17	0	24
CRW_00552	5S_rRNA links to Rfam database...	0.38	0.36	0.41	14	7106	22	2	18	2	25
CRW_00555	5S_rRNA links to Rfam database...	0.28	0.25	0.31	10	7594	22	2	20	0	30
CRW_00567	5S_rRNA links to Rfam database...	0.49	0.45	0.53	18	7469	18	4	12	2	22
CRW_00570	5S_rRNA links to Rfam database...	0.83	0.81	0.86	30	6868	6	0	5	1	7
CRW_00573	5S_rRNA links to Rfam database...	0.26	0.25	0.27	10	7103	28	1	26	1	30
CRW_01482	5S_rRNA links to Rfam database...	0.91	0.87	0.95	41	8735	7	0	2	5	6
CRW_01484	5S_rRNA links to Rfam database...	0.42	0.41	0.44	16	7467	20	2	18	0	23
CRW_01485	5S_rRNA links to Rfam database...	0.43	0.38	0.48	15	7472	16	2	14	0	24
CRW_01487	5S_rRNA links to Rfam database...	0.56	0.51	0.62	21	7469	13	2	11	0	20
CRW_01489	5S_rRNA links to Rfam database...	0.42	0.41	0.44	16	7467	20	3	17	0	23
CRW_01491	5S_rRNA links to Rfam database...	0.00	0.00	0.00	0	8352	33	1	32	0	43
CRW_01492	5S_rRNA links to Rfam database...	0.77	0.74	0.82	31	7588	10	0	7	3	11
CRW_01493	5S_rRNA links to Rfam database...	0.58	0.56	0.62	24	7836	15	4	11	0	19
CRW_01494	5S_rRNA links to Rfam database...	0.73	0.65	0.81	26	7108	8	0	6	2	14
CRW_01496	5S_rRNA links to Rfam database...	0.25	0.23	0.29	10	8093	27	2	23	2	34
CRW_01497	5S_rRNA links to Rfam database...	0.33	0.28	0.41	11	7113	18	0	16	2	29
CRW_01498	5S_rRNA links to Rfam database...	0.86	0.77	0.97	33	8094	2	0	1	1	10
CRW_01499	5S_rRNA links to Rfam database...	0.27	0.24	0.30	10	7968	24	1	22	1	31
CRW_01500	5S_rRNA links to Rfam database...	0.83	0.79	0.88	30	7716	5	2	2	1	8
CRW_01501	5S_rRNA links to Rfam database...	0.80	0.76	0.85	34	8475	6	0	6	0	11
CRW_01502	5S_rRNA links to Rfam database...	0.92	0.89	0.95	41	8342	4	0	2	2	5
CRW_01504	5S_rRNA links to Rfam database...	0.93	0.86	1.00	37	7838	2	0	0	2	6
CRW_01507	5S_rRNA links to Rfam database...	0.72	0.66	0.79	27	7469	10	2	5	3	14
CRW_01508	5S_rRNA links to Rfam database...	0.49	0.45	0.53	19	7965	19	3	14	2	23
CRW_01521	5S_rRNA links to Rfam database...	0.71	0.56	0.91	20	6881	6	0	2	4	16
CRW_01532	5S_rRNA links to Rfam database...	0.46	0.41	0.54	15	7112	16	1	12	3	22
CRW_01533	5S_rRNA links to Rfam database...	0.57	0.51	0.63	19	7110	15	2	9	4	18
CRW_01534	5S_rRNA links to Rfam database...	0.25	0.24	0.26	9	7106	25	7	18	0	28
CRW_01535	5S_rRNA links to Rfam database...	0.38	0.38	0.38	14	7103	24	3	20	1	23
CRW_01536	5S_rRNA links to Rfam database...	0.74	0.68	0.81	25	6990	7	0	6	1	12
CRW_01537	5S_rRNA links to Rfam database...	0.17	0.14	0.23	5	7118	17	2	15	0	32
CRW_01539	5S_rRNA links to Rfam database...	0.55	0.49	0.62	18	7111	11	3	8	0	19
CRW_01540	5S_rRNA links to Rfam database...	0.69	0.65	0.73	24	7107	11	0	9	2	13
CRW_01541	5S_rRNA links to Rfam database...	0.26	0.24	0.28	9	7108	23	6	17	0	28
CRW_01542	5S_rRNA links to Rfam database...	0.72	0.65	0.80	24	7110	11	0	6	5	13
CRW_01544	5S_rRNA links to Rfam database...	0.73	0.70	0.76	26	7106	9	2	6	1	11
CRW_01548	5S_rRNA links to Rfam database...	0.42	0.41	0.44	15	6987	20	3	16	1	22
CRW_01555	5S_rRNA links to Rfam database...	0.73	0.65	0.83	24	9016	10	3	2	5	13
CRW_01556	5S_rRNA links to Rfam database...	0.77	0.70	0.84	26	7109	6	0	5	1	11
CRW_01557	5S_rRNA links to Rfam database...	0.41	0.41	0.42	15	7104	21	3	18	0	22
CRW_01559	5S_rRNA links to Rfam database...	0.81	0.73	0.90	27	7230	7	0	3	4	10
CRW_01562	5S_rRNA links to Rfam database...	0.22	0.22	0.23	8	7105	28	1	26	1	29
CRW_01563	5S_rRNA links to Rfam database...	0.52	0.51	0.53	19	6867	17	2	15	0	18
CRW_01566	5S_rRNA links to Rfam database...	0.43	0.41	0.47	15	7108	18	2	15	1	22
CRW_01568	5S_rRNA links to Rfam database...	0.26	0.24	0.29	9	7109	22	3	19	0	28
CRW_01569	5S_rRNA links to Rfam database...	0.25	0.24	0.27	9	7107	25	2	22	1	28
CRW_01570	5S_rRNA links to Rfam database...	0.66	0.59	0.73	22	7110	14	2	6	6	15
CRW_01572	5S_rRNA links to Rfam database...	0.39	0.35	0.45	13	6992	18	2	14	2	24
CRW_01573	5S_rRNA links to Rfam database...	0.21	0.22	0.22	8	7223	29	3	26	0	29
CRW_01578	5S_rRNA links to Rfam database...	0.40	0.41	0.39	15	7102	23	3	20	0	22
CRW_01580	5S_rRNA links to Rfam database...	0.28	0.24	0.32	9	7112	19	3	16	0	28
CRW_01581	5S_rRNA links to Rfam database...	0.18	0.16	0.21	6	7111	23	1	22	0	31
CRW_01583	5S_rRNA links to Rfam database...	0.39	0.35	0.43	13	7110	17	3	14	0	24
CRW_01584	5S_rRNA links to Rfam database...	0.35	0.35	0.36	13	7104	23	4	19	0	24
CRW_01590	5S_rRNA links to Rfam database...	0.24	0.24	0.25	9	7104	28	3	24	1	28
CRW_01593	5S_rRNA links to Rfam database...	0.25	0.24	0.27	9	7107	24	5	19	0	28
CRW_01595	5S_rRNA links to Rfam database...	0.00	0.00	0.00	0	8486	30	3	26	1	37
CRW_01599	5S_rRNA links to Rfam database...	0.44	0.43	0.46	16	7105	19	1	18	0	21
CRW_01603	5S_rRNA links to Rfam database...	0.22	0.22	0.24	8	7106	26	6	20	0	29
CRW_01605	5S_rRNA links to Rfam database...	0.64	0.54	0.77	20	7114	11	0	6	5	17
CRW_01606	5S_rRNA links to Rfam database...	0.25	0.24	0.26	9	7105	26	4	22	0	28
CRW_01608	5S_rRNA links to Rfam database...	0.55	0.54	0.57	20	8350	16	3	12	1	17
CRW_01613	5S_rRNA links to Rfam database...	0.67	0.65	0.69	24	6986	15	0	11	4	13
CRW_01616	5S_rRNA links to Rfam database...	0.39	0.38	0.40	14	7105	22	3	18	1	23
CRW_01617	5S_rRNA links to Rfam database...	0.25	0.22	0.30	8	7113	19	3	16	0	29
CRW_01620	5S_rRNA links to Rfam database...	0.25	0.24	0.26	9	6986	27	7	19	1	28
CRW_01621	5S_rRNA links to Rfam database...	0.68	0.59	0.79	22	7112	7	0	6	1	15
CRW_01623	5S_rRNA links to Rfam database...	0.20	0.19	0.21	7	7107	26	2	24	0	30
CRW_01625	5S_rRNA links to Rfam database...	0.31	0.32	0.30	12	7100	29	4	24	1	25
NDB_00014	-	0.95	0.90	1.00	9	181	0	0	0	0	1
NDB_00015	-	0.36	0.40	0.36	4	265	7	0	7	0	6
NDB_00016	-	0.96	0.92	1.00	11	265	0	0	0	0	1
NDB_00047	-	0.96	0.92	1.00	11	265	0	0	0	0	1
NDB_00048	-	-0.02	0.00	0.00	0	1513	27	0	27	0	28
NDB_00049	-	0.96	0.92	1.00	12	313	0	0	0	0	1
NDB_00051	tRNA links to Rfam database...	0.84	0.71	1.00	17	2758	0	0	0	0	7
PDB_00001	-	-0.02	0.00	0.00	0	272	4	0	4	0	12
PDB_00002	-	0.71	0.63	0.83	5	204	1	0	1	0	3
PDB_00003	-	0.86	0.75	1.00	9	342	0	0	0	0	3
PDB_00004	-	0.79	0.63	1.00	12	808	0	0	0	0	7
PDB_00005	Tymo_tRNA-like links to Rfam database...	0.88	0.79	1.00	11	935	0	0	0	0	3
PDB_00006	-	1.00	1.00	1.00	14	689	0	0	0	0	0
PDB_00011	-	0.96	0.92	1.00	11	265	0	0	0	0	1
PDB_00012	mir-TAR links to Rfam database...	1.00	1.00	1.00	7	399	3	0	0	3	0
PDB_00013	-	1.00	1.00	1.00	10	396	1	0	0	1	0
PDB_00017	-	0.81	0.67	1.00	10	693	0	0	0	0	5
PDB_00018	-	0.19	0.20	0.21	4	1016	15	2	13	0	16
PDB_00019	-	0.45	0.50	0.44	4	244	5	1	4	0	4
PDB_00020	-	0.75	0.65	0.87	13	765	2	0	2	0	7
PDB_00021	-	1.00	1.00	1.00	8	182	0	0	0	0	0
PDB_00022	-	0.74	0.56	1.00	5	248	0	0	0	0	4
PDB_00032	-	0.51	0.40	0.67	6	894	4	1	2	1	9
PDB_00034	-	0.76	0.58	1.00	7	371	0	0	0	0	5
PDB_00035	-	0.81	0.67	1.00	6	204	0	0	0	0	3
PDB_00036	-	-0.01	0.00	0.00	0	3459	27	1	26	0	27
PDB_00039	-	-0.01	0.00	0.00	0	5325	31	0	31	0	45
PDB_00040	-	0.83	0.70	1.00	7	269	0	0	0	0	3
PDB_00041	-	1.00	1.00	1.00	12	618	0	0	0	0	0
PDB_00043	-	0.83	0.69	1.00	9	426	0	0	0	0	4
PDB_00048	-	1.00	1.00	1.00	9	291	1	0	0	1	0
PDB_00049	-	0.62	0.40	1.00	4	227	0	0	0	0	6
PDB_00053	-	1.00	1.00	1.00	11	424	0	0	0	0	0
PDB_00054	-	-0.04	0.00	0.00	0	184	6	0	6	0	10
PDB_00056	-	0.93	0.88	1.00	14	616	0	0	0	0	2
PDB_00057	-	1.00	1.00	1.00	10	341	2	0	0	2	0
PDB_00065	-	0.54	0.30	1.00	3	403	1	0	0	1	7
PDB_00070	tRNA links to Rfam database...	0.66	0.67	0.67	16	2826	8	1	7	0	8
PDB_00074	-	-0.03	0.00	0.00	0	370	8	0	8	0	12
PDB_00081	-	1.00	1.00	1.00	9	181	0	0	0	0	0
PDB_00088	-	0.86	0.75	1.00	9	426	1	0	0	1	3
PDB_00096	-	-0.03	0.00	0.00	0	315	10	0	10	0	12
PDB_00098	-	0.81	0.67	1.00	4	227	0	0	0	0	2
PDB_00102	-	1.00	1.00	1.00	8	223	0	0	0	0	0
PDB_00104	-	-0.02	0.00	0.00	0	618	12	0	12	0	16
PDB_00107	-	1.00	1.00	1.00	11	454	1	0	0	1	0
PDB_00108	-	0.84	0.71	1.00	5	205	0	0	0	0	2
PDB_00110	-	1.00	1.00	1.00	7	246	0	0	0	0	0
PDB_00113	-	0.94	0.89	1.00	8	223	0	0	0	0	1
PDB_00115	-	-0.03	0.00	0.00	0	546	15	0	15	0	16
PDB_00116	-	0.70	0.50	1.00	3	228	1	0	0	1	3
PDB_00119	-	0.95	0.90	1.00	9	244	0	0	0	0	1
PDB_00120	-	0.95	0.90	1.00	9	222	0	0	0	0	1
PDB_00121	-	0.95	0.90	1.00	9	222	0	0	0	0	1
PDB_00122	-	0.96	0.92	1.00	11	289	0	0	0	0	1
PDB_00123	-	0.33	0.33	0.33	12	4150	24	0	24	0	24
PDB_00124	-	0.86	0.90	0.82	9	485	2	2	0	0	1
PDB_00125	-	0.00	0.00	0.00	0	231	0	0	0	0	10
PDB_00128	-	0.80	0.71	0.91	10	485	1	0	1	0	4
PDB_00130	-	1.00	1.00	1.00	6	270	0	0	0	0	0
PDB_00132	-	0.81	0.67	1.00	8	427	0	0	0	0	4
PDB_00134	-	0.79	0.63	1.00	5	373	0	0	0	0	3
PDB_00136	-	0.81	0.73	0.90	19	2394	2	0	2	0	7
PDB_00137	-	0.87	0.77	1.00	10	396	0	0	0	0	3
PDB_00138	-	0.94	1.00	0.89	8	369	1	1	0	0	0
PDB_00142	-	0.91	0.83	1.00	10	425	0	0	0	0	2
PDB_00149	-	0.93	0.87	1.00	13	690	0	0	0	0	2
PDB_00150	-	0.66	0.60	0.75	6	292	3	0	2	1	4
PDB_00152	-	1.00	1.00	1.00	8	182	0	0	0	0	0
PDB_00153	-	1.00	1.00	1.00	10	243	0	0	0	0	0
PDB_00155	-	0.86	0.75	1.00	6	319	0	0	0	0	2
PDB_00157	-	0.28	0.24	0.33	7	3300	18	0	14	4	22
PDB_00158	-	0.77	0.60	1.00	12	849	0	0	0	0	8
PDB_00159	-	0.73	0.55	1.00	6	345	0	0	0	0	5
PDB_00160	-	0.94	0.89	1.00	8	268	0	0	0	0	1
PDB_00168	-	0.61	0.67	0.57	4	293	4	0	3	1	2
PDB_00169	-	0.43	0.40	0.50	4	223	4	0	4	0	6
PDB_00170	-	0.93	0.88	1.00	14	616	0	0	0	0	2
PDB_00171	-	0.70	0.50	1.00	6	429	0	0	0	0	6
PDB_00174	-	0.93	0.86	1.00	19	1016	0	0	0	0	3
PDB_00175	-	-0.01	0.00	0.00	0	4534	26	0	26	0	36
PDB_00178	-	0.39	0.36	0.44	4	519	5	1	4	0	7
PDB_00181	-	0.94	0.89	1.00	8	223	0	0	0	0	1
PDB_00182	-	0.49	0.44	0.57	4	246	3	0	3	0	5
PDB_00183	-	0.62	0.52	0.75	12	1469	4	0	4	0	11
PDB_00184	-	0.87	0.77	1.00	10	551	0	0	0	0	3
PDB_00185	-	0.45	0.43	0.48	12	2901	13	1	12	0	16
PDB_00190	-	0.95	0.90	1.00	9	222	0	0	0	0	1
PDB_00192	-	0.21	0.14	0.33	5	3225	10	0	10	0	31
PDB_00195	-	-0.01	0.00	0.00	0	3450	36	0	36	0	42
PDB_00196	-	0.31	0.32	0.32	9	1568	19	0	19	0	19
PDB_00197	-	1.00	1.00	1.00	7	293	0	0	0	0	0
PDB_00200	-	1.00	1.00	1.00	9	201	0	0	0	0	0
PDB_00201	-	0.77	0.60	1.00	6	319	0	0	0	0	4
PDB_00202	-	0.96	0.93	1.00	13	548	1	0	0	1	1
PDB_00203	-	0.96	0.92	1.00	12	549	0	0	0	0	1
PDB_00205	-	0.88	0.79	1.00	11	424	0	0	0	0	3
PDB_00206	-	0.86	0.75	1.00	6	270	0	0	0	0	2
PDB_00207	-	0.96	0.93	1.00	13	365	0	0	0	0	1
PDB_00209	-	0.96	1.00	0.92	11	549	1	1	0	0	0
PDB_00211	-	0.95	0.90	1.00	9	181	0	0	0	0	1
PDB_00213	Gammaretro_CES links to Rfam database...	0.72	0.68	0.76	28	5013	9	0	9	0	13
PDB_00214	-	0.73	0.55	1.00	6	400	0	0	0	0	5
PDB_00215	-	-0.02	0.00	0.00	0	1105	23	0	23	0	24
PDB_00219	-	1.00	1.00	1.00	7	203	0	0	0	0	0
PDB_00221	-	0.66	0.44	1.00	4	249	0	0	0	0	5
PDB_00224	-	0.93	0.88	1.00	7	183	0	0	0	0	1
PDB_00229	tRNA links to Rfam database...	0.96	0.91	1.00	21	2754	0	0	0	0	2
PDB_00234	-	-0.04	0.00	0.00	0	266	10	0	10	0	12
PDB_00236	-	-0.02	0.00	0.00	0	1108	20	0	20	0	24
PDB_00237	-	0.88	0.78	1.00	7	371	1	0	0	1	2
PDB_00239	-	0.81	0.67	1.00	12	808	0	0	0	0	6
PDB_00243	-	1.00	1.00	1.00	12	618	0	0	0	0	0
PDB_00248	-	0.96	0.92	1.00	11	265	0	0	0	0	1
PDB_00249	-	0.00	0.00	0.00	0	276	0	0	0	0	11
PDB_00250	-	0.87	0.80	0.95	20	1749	1	0	1	0	5
PDB_00252	-	0.97	0.93	1.00	14	766	2	0	0	2	1
PDB_00254	-	-0.04	0.00	0.00	0	265	11	0	11	0	12
PDB_00256	-	-0.02	0.00	0.00	0	319	6	6	0	0	4
PDB_00257	-	0.95	0.91	1.00	10	341	0	0	0	0	1
PDB_00258	-	1.00	1.00	1.00	8	245	0	0	0	0	0
PDB_00261	-	-0.03	0.00	0.00	0	486	10	0	10	0	16
PDB_00262	-	0.28	0.29	0.30	7	1105	16	0	16	0	17
PDB_00264	-	-0.01	0.00	0.00	0	1115	13	0	13	0	18
PDB_00267	-	-0.04	0.00	0.00	0	365	13	0	13	0	14
PDB_00286	-	-0.03	0.00	0.00	0	183	9	0	7	2	6
PDB_00293	-	-0.01	0.00	0.00	0	1111	17	8	9	0	12
PDB_00307	-	0.47	0.44	0.50	20	11135	20	6	14	0	25
PDB_00312	-	1.00	1.00	1.00	9	426	1	0	0	1	0
PDB_00313	tRNA links to Rfam database...	0.92	0.84	1.00	16	2685	3	0	0	3	3
PDB_00317	-	1.00	1.00	1.00	10	368	0	0	0	0	0
PDB_00326	-	0.80	0.64	1.00	18	3723	0	0	0	0	10
PDB_00327	tRNA links to Rfam database...	0.86	0.74	1.00	17	3064	0	0	0	0	6
PDB_00339	-	0.75	0.56	1.00	9	657	1	0	0	1	7
PDB_00341	-	0.37	0.31	0.45	5	692	6	0	6	0	11
PDB_00342	-	-0.02	0.00	0.00	0	761	19	0	19	0	10
PDB_00343	-	0.72	0.57	0.92	12	1583	3	0	1	2	9
PDB_00347	-	0.62	0.50	0.77	10	1163	3	0	3	0	10
PDB_00349	-	0.96	0.93	1.00	13	933	0	0	0	0	1
PDB_00351	-	-0.02	0.00	0.00	0	554	7	0	7	0	12
PDB_00352	-	0.86	0.79	0.94	15	1209	1	0	1	0	4
PDB_00357	-	0.89	0.80	1.00	8	772	0	0	0	0	2
PDB_00358	-	0.21	0.21	0.22	10	10540	35	14	21	0	37
PDB_00362	tRNA links to Rfam database...	0.98	0.95	1.00	21	2829	0	0	0	0	1
PDB_00365	-	1.00	1.00	1.00	14	421	0	0	0	0	0
PDB_00370	-	0.00	0.00	0.00	0	15181	44	13	31	0	25
PDB_00371	-	0.81	0.67	1.00	10	551	0	0	0	0	5
PDB_00377	-	1.00	1.00	1.00	12	516	0	0	0	0	0
PDB_00378	-	0.88	0.79	1.00	11	692	0	0	0	0	3
PDB_00392	tRNA links to Rfam database...	0.65	0.67	0.64	14	2828	8	2	6	0	7
PDB_00400	-	-0.01	0.00	0.00	0	3144	16	0	16	0	34
PDB_00402	tRNA links to Rfam database...	0.96	0.91	1.00	21	2754	0	0	0	0	2
PDB_00411	-	0.54	0.47	0.64	7	584	4	0	4	0	8
PDB_00417	-	0.46	0.43	0.50	24	14148	26	1	23	2	32
PDB_00420	-	0.77	0.60	1.00	6	490	4	0	0	4	4
PDB_00421	-	0.22	0.23	0.22	10	11430	36	2	34	0	33
PDB_00425	tRNA links to Rfam database...	0.66	0.64	0.70	14	2681	6	2	4	0	8
PDB_00430	tRNA links to Rfam database...	0.73	0.72	0.75	18	3216	6	3	3	0	7
PDB_00431	tRNA links to Rfam database...	0.88	0.95	0.83	19	2188	5	4	0	1	1
PDB_00433	-	0.18	0.18	0.19	6	6639	25	4	21	0	28
PDB_00447	-	0.11	0.11	0.12	5	7097	38	7	31	0	39
PDB_00454	-	-0.01	0.00	0.00	0	2672	29	0	29	0	32
PDB_00474	tRNA links to Rfam database...	0.40	0.39	0.41	9	2679	15	1	12	2	14
PDB_00475	-	0.36	0.41	0.32	13	10837	35	11	17	7	19
PDB_00481	-	0.73	0.54	1.00	14	1877	0	0	0	0	12
PDB_00513	-	1.00	1.00	1.00	7	224	0	0	0	0	0
PDB_00522	-	0.97	0.94	1.00	17	1111	0	0	0	0	1
PDB_00526	-	-0.01	0.00	0.00	0	296	4	1	3	0	3
PDB_00527	-	0.00	0.00	0.00	0	300	0	0	0	0	5
PDB_00537	-	0.74	0.56	1.00	5	401	0	0	0	0	4
PDB_00553	mir-TAR links to Rfam database...	1.00	1.00	1.00	11	454	0	0	0	0	0
PDB_00565	-	0.53	0.48	0.60	24	8088	17	1	15	1	26
PDB_00569	-	0.45	0.44	0.45	20	11432	24	4	20	0	25
PDB_00570	-	0.90	0.82	1.00	18	2260	0	0	0	0	4
PDB_00571	tRNA links to Rfam database...	0.87	0.80	0.95	20	3300	1	1	0	0	5
PDB_00573	-	0.63	0.53	0.75	18	6646	10	0	6	4	16
PDB_00584	-	0.60	0.53	0.69	9	1472	4	0	4	0	8
PDB_00593	-	0.38	0.39	0.38	18	11428	30	4	26	0	28
PDB_00599	-	0.96	0.93	1.00	13	548	0	0	0	0	1
PDB_00603	-	0.95	0.90	1.00	9	244	0	0	0	0	1
PDB_00611	-	-0.01	0.00	0.00	0	772	8	1	7	0	11
PDB_00617	-	0.95	0.90	1.00	9	267	0	0	0	0	1
PDB_00627	-	0.63	0.53	0.75	9	1641	5	0	3	2	8
PDB_00629	-	0.66	0.43	1.00	10	1643	0	0	0	0	13
PDB_00637	-	0.90	0.90	0.90	19	2325	6	0	2	4	2
PDB_00648	-	0.92	0.92	0.92	12	848	1	0	1	0	1
PDB_00663	-	-0.01	0.00	0.00	0	930	20	0	16	4	10
PDB_00667	tRNA links to Rfam database...	0.71	0.68	0.75	15	2830	7	4	1	2	7
PDB_00679	-	0.00	0.00	0.00	0	17529	55	3	46	6	56
PDB_00681	-	-0.01	0.00	0.00	0	1256	19	0	19	0	19
PDB_00682	-	-0.03	0.00	0.00	0	481	15	0	15	0	16
PDB_00686	-	0.97	0.95	1.00	18	685	0	0	0	0	1
PDB_00687	-	0.42	0.42	0.45	5	619	6	0	6	0	7
PDB_00692	-	0.63	0.40	1.00	8	1217	0	0	0	0	12
PDB_00693	-	0.94	0.88	1.00	15	1161	0	0	0	0	2
PDB_00698	-	0.97	0.95	1.00	18	843	0	0	0	0	1
PDB_00702	-	0.78	0.67	0.92	24	4345	4	0	2	2	12
PDB_00705	-	0.86	0.75	1.00	6	247	0	0	0	0	2
PDB_00709	-	-0.02	0.00	0.00	0	765	15	0	15	0	16
PDB_00710	-	0.00	0.00	0.00	0	780	0	0	0	0	16
PDB_00713	-	0.43	0.43	0.45	9	1996	11	0	11	0	12
PDB_00716	HDV_ribozyme links to Rfam database...	0.68	0.70	0.67	16	2677	9	0	8	1	7
PDB_00724	-	-0.01	0.00	0.00	0	2122	23	0	23	0	29
PDB_00725	-	0.89	0.80	1.00	12	583	0	0	0	0	3
PDB_00726	-	0.94	0.89	1.00	8	343	1	0	0	1	1
PDB_00727	-	1.00	1.00	1.00	7	554	3	0	0	3	0
PDB_00728	-	0.97	0.93	1.00	14	482	0	0	0	0	1
PDB_00732	-	0.33	0.33	0.34	10	2974	19	0	19	0	20
PDB_00733	-	0.22	0.23	0.23	7	2895	25	2	22	1	23
PDB_00734	-	0.62	0.40	1.00	4	227	0	0	0	0	6
PDB_00737	-	0.85	0.73	1.00	8	343	0	0	0	0	3
PDB_00740	-	0.59	0.36	1.00	4	227	0	0	0	0	7
PDB_00741	Entero_5_CRE links to Rfam database...	0.91	0.82	1.00	14	689	0	0	0	0	3
PDB_00746	-	0.89	0.84	0.94	32	4719	6	0	2	4	6
PDB_00750	-	0.62	0.59	0.66	29	11891	18	0	15	3	20
PDB_00751	-	0.26	0.23	0.33	3	586	8	1	5	2	10
PDB_00752	-	0.66	0.59	0.74	26	7346	12	0	9	3	18
PDB_00754	-	0.20	0.25	0.18	3	1468	16	4	10	2	9
PDB_00767	-	1.00	1.00	1.00	20	2191	4	0	0	4	0
PDB_00800	-	0.32	0.34	0.32	10	2049	21	2	19	0	19
PDB_00804	-	0.00	0.00	0.00	0	15344	56	10	46	0	50
PDB_00806	-	0.80	0.64	1.00	16	1814	0	0	0	0	9
PDB_00807	-	0.72	0.52	1.00	12	1879	1	0	0	1	11
PDB_00809	-	-0.02	0.00	0.00	0	487	9	0	9	0	14
PDB_00810	s2m links to Rfam database...	0.51	0.41	0.64	7	1070	4	2	2	0	10
PDB_00815	-	0.94	0.89	1.00	8	622	1	0	0	1	1
PDB_00823	-	-0.03	0.00	0.00	0	186	4	0	4	0	9
PDB_00828	Purine links to Rfam database...	0.88	0.78	1.00	21	2464	0	0	0	0	6
PDB_00829	Purine links to Rfam database...	0.86	0.75	1.00	18	2260	0	0	0	0	6
PDB_00842	-	0.79	0.63	1.00	5	373	0	0	0	0	3
PDB_00851	-	0.49	0.44	0.56	18	4721	14	0	14	0	23
PDB_00855	-	0.71	0.60	0.86	6	458	2	0	1	1	4
PDB_00857	-	1.00	1.00	1.00	15	1066	0	0	0	0	0
PDB_00863	-	0.78	0.61	1.00	11	979	0	0	0	0	7
PDB_00864	-	0.67	0.54	0.83	34	13000	9	0	7	2	29
PDB_00865	-	0.96	0.92	1.00	11	340	0	0	0	0	1
PDB_00868	-	1.00	1.00	1.00	14	1312	0	0	0	0	0
PDB_00870	-	-0.01	0.00	0.00	0	1113	15	0	15	0	16
PDB_00871	-	-0.02	0.00	0.00	0	1105	23	0	23	0	24
PDB_00873	-	-0.01	0.00	0.00	0	4513	47	0	47	0	48
PDB_00874	-	-0.02	0.00	0.00	0	928	18	0	18	0	20
PDB_00876	HIV_FE links to Rfam database...	0.97	0.95	1.00	19	971	0	0	0	0	1
PDB_00878	-	0.66	0.67	0.67	8	484	4	0	4	0	4
PDB_00879	-	0.88	0.77	1.00	30	5020	2	0	0	2	9
PDB_00883	-	1.00	1.00	1.00	12	618	0	0	0	0	0
PDB_00885	-	0.97	0.94	1.00	17	803	0	0	0	0	1
PDB_00886	-	-0.01	0.00	0.00	0	4147	39	0	39	0	40
PDB_00890	-	-0.02	0.00	0.00	0	690	13	2	11	0	14
PDB_00891	-	-0.02	0.00	0.00	0	927	19	6	13	0	15
PDB_00892	-	0.00	0.00	0.00	0	2556	0	0	0	0	15
PDB_00897	-	0.00	0.00	0.00	0	11425	51	3	48	0	61
PDB_00906	-	-0.01	0.00	0.00	0	6631	39	0	39	0	48
PDB_00918	-	0.93	1.00	0.88	7	317	1	1	0	0	0
PDB_00923	-	1.00	1.00	1.00	6	184	0	0	0	0	0
PDB_00924	-	0.97	0.94	1.00	34	3621	0	0	0	0	2
PDB_00925	-	0.95	0.91	1.00	10	341	1	0	0	1	1
PDB_00928	-	0.79	0.63	1.00	5	295	0	0	0	0	3
PDB_00929	-	-0.02	0.00	0.00	0	761	19	0	19	0	20
PDB_00932	-	0.92	0.85	1.00	11	809	0	0	0	0	2
PDB_00937	-	0.97	0.94	1.00	17	613	0	0	0	0	1
PDB_00939	-	0.28	0.29	0.28	13	10250	33	6	27	0	32
PDB_00943	-	-0.01	0.00	0.00	0	1421	10	0	10	0	15
PDB_00945	-	0.95	0.90	1.00	9	456	0	0	0	0	1
PDB_00960	-	-0.03	0.00	0.00	0	394	13	2	10	1	10
PDB_00961	-	-0.01	0.00	0.00	0	1758	14	2	10	2	10
PDB_00964	-	0.88	0.78	1.00	7	623	2	0	0	2	2
PDB_00966	-	-0.03	0.00	0.00	0	244	9	2	7	0	7
PDB_00967	-	0.49	0.46	0.52	22	12048	20	0	20	0	26
PDB_00973	-	0.00	0.00	0.00	0	351	0	0	0	0	8
PDB_00974	-	0.00	0.00	0.00	0	378	0	0	0	0	9
PDB_00979	-	0.23	0.21	0.26	10	11743	30	0	28	2	38
PDB_00980	-	0.45	0.49	0.42	20	11127	28	6	22	0	21
PDB_00986	-	0.92	0.86	1.00	12	423	0	0	0	0	2
PDB_00987	-	0.79	0.63	1.00	10	551	0	0	0	0	6
PDB_00989	-	0.93	0.86	1.00	31	2972	0	0	0	0	5
PDB_00994	-	0.25	0.26	0.24	11	10539	38	4	31	3	31
PDB_01000	-	0.59	0.67	0.53	20	10840	32	10	8	14	10
PDB_01001	tRNA links to Rfam database...	0.37	0.39	0.37	7	2126	12	3	9	0	11
PDB_01002	tRNA links to Rfam database...	0.95	0.90	1.00	19	2756	2	0	0	2	2
PDB_01008	-	1.00	1.00	1.00	12	583	0	0	0	0	0
PDB_01009	tRNA links to Rfam database...	0.90	0.90	0.90	19	2464	5	0	2	3	2
PDB_01017	-	-0.03	0.00	0.00	0	422	13	0	13	0	14
PDB_01019	-	-0.03	0.00	0.00	0	422	13	0	13	0	14
PDB_01020	Purine links to Rfam database...	0.86	0.74	1.00	17	2261	1	0	0	1	6
PDB_01025	-	1.00	1.00	1.00	9	244	0	0	0	0	0
PDB_01035	-	0.96	0.92	1.00	24	1516	0	0	0	0	2
PDB_01040	-	0.30	0.30	0.32	6	1109	13	0	13	0	14
PDB_01044	-	1.00	1.00	1.00	16	930	4	0	0	4	0
PDB_01045	-	1.00	1.00	1.00	23	1202	1	0	0	1	0
PDB_01050	UnaL2 links to Rfam database...	0.92	0.85	1.00	11	619	2	0	0	2	2
PDB_01051	Telomerase-cil links to Rfam database...	0.79	0.69	0.90	9	893	2	0	1	1	4
PDB_01053	tRNA links to Rfam database...	1.00	1.00	1.00	16	1362	0	0	0	0	0
PDB_01054	-	0.64	0.65	0.64	28	11737	16	4	12	0	15
PDB_01056	-	0.74	0.56	1.00	5	248	0	0	0	0	4
PDB_01057	-	1.00	1.00	1.00	8	202	0	0	0	0	0
PDB_01059	-	0.88	1.00	0.78	7	222	2	2	0	0	0
PDB_01060	-	-0.01	0.00	0.00	0	1985	31	0	31	0	21
PDB_01061	-	0.17	0.18	0.18	7	3121	32	0	32	0	33
PDB_01062	-	0.75	0.56	1.00	9	937	0	0	0	0	7
PDB_01065	-	-0.03	0.00	0.00	0	225	6	0	6	0	10
PDB_01070	-	0.78	0.70	0.86	38	12676	6	0	6	0	16
PDB_01071	-	0.83	0.69	1.00	9	397	0	0	0	0	4
PDB_01073	SAM links to Rfam database...	0.52	0.47	0.57	16	4343	13	2	10	1	18
PDB_01074	-	-0.01	0.00	0.00	0	2745	30	3	27	0	25
PDB_01075	-	0.92	0.84	1.00	27	2388	0	0	0	0	5
PDB_01077	-	0.89	0.84	0.94	16	1936	2	0	1	1	3
PDB_01084	-	1.00	1.00	1.00	7	224	0	0	0	0	0
PDB_01092	glmS links to Rfam database...	0.81	0.75	0.89	39	10109	6	1	4	1	13
PDB_01097	-	0.93	0.88	1.00	7	203	0	0	0	0	1
PDB_01099	-	0.90	0.82	1.00	9	267	0	0	0	0	2
PDB_01100	-	0.60	0.50	0.73	11	1470	4	0	4	0	11
PDB_01108	-	1.00	1.00	1.00	9	222	1	0	0	1	0
PDB_01114	TPP links to Rfam database...	0.45	0.37	0.56	10	2832	8	0	8	0	17
PDB_01117	-	-0.01	0.00	0.00	0	772	8	0	8	0	17
PDB_01118	-	0.92	0.84	1.00	16	1580	1	0	0	1	3
PDB_01119	-	0.96	0.93	1.00	13	617	0	0	0	0	1
PDB_01126	-	0.48	0.50	0.47	14	3051	18	2	14	2	14
PDB_01127	-	-0.01	0.00	0.00	0	976	16	0	14	2	14
PDB_01128	-	0.88	0.78	1.00	21	2754	0	0	0	0	6
PDB_01130	-	0.28	0.25	0.33	5	1755	10	0	10	0	15
PDB_01133	-	1.00	1.00	1.00	10	341	0	0	0	0	0
PDB_01135	-	-0.02	0.00	0.00	0	397	9	2	7	0	9
PDB_01137	-	-0.02	0.00	0.00	0	321	4	2	2	0	8
PDB_01138	-	-0.02	0.00	0.00	0	316	9	0	9	0	7
PDB_01145	-	1.00	1.00	1.00	14	766	2	0	0	2	0
PDB_01150	-	0.93	0.88	1.00	7	224	0	0	0	0	1
PDB_01152	HIV_FS2 links to Rfam database...	0.88	0.79	1.00	11	550	0	0	0	0	3
PDB_01154	-	0.67	0.45	1.00	5	401	0	0	0	0	6
PDB_01156	-	-0.01	0.00	0.00	0	3799	29	0	29	0	35
PDB_01160	-	0.55	0.55	0.55	11	2060	9	2	7	0	9
PDB_01162	-	0.55	0.56	0.56	5	1531	7	0	4	3	4
PDB_01163	-	0.98	0.95	1.00	21	1014	0	0	0	0	1
PDB_01164	-	0.96	0.92	1.00	24	1516	0	0	0	0	2
PDB_01167	-	0.70	0.50	1.00	4	186	0	0	0	0	4
PDB_01168	-	0.86	0.75	1.00	6	184	0	0	0	0	2
PDB_01178	-	0.84	0.71	1.00	10	518	0	0	0	0	4
PDB_01187	-	0.43	0.40	0.47	21	9966	25	2	22	1	31
PDB_01194	-	0.89	0.87	0.93	13	482	1	1	0	0	2
PDB_01199	-	0.81	0.67	1.00	16	2129	0	0	0	0	8
PDB_01201	-	0.88	0.77	1.00	17	1111	0	0	0	0	5
PDB_01203	-	0.74	0.68	0.81	13	1160	3	2	1	0	6
PDB_01205	-	-0.02	0.00	0.00	0	1014	21	4	17	0	18
PDB_01208	-	0.62	0.50	0.77	10	1163	3	0	3	0	10
PDB_01209	-	-0.01	0.00	0.00	0	1165	11	0	11	0	20
PDB_01212	-	0.62	0.50	0.77	10	1163	3	0	3	0	10
PDB_01213	-	-0.01	0.00	0.00	0	1073	8	0	8	0	18
PDB_01216	-	0.62	0.50	0.77	10	1163	3	0	3	0	10
PDB_01219	-	0.25	0.20	0.33	4	934	8	0	8	0	16
PDB_01236	ykoK links to Rfam database...	0.79	0.70	0.88	38	11585	6	0	5	1	16
PDB_01237	-	1.00	1.00	1.00	8	268	0	0	0	0	0
PDB_01249	-	0.50	0.50	0.50	27	11121	27	0	27	0	27
PDB_01250	-	0.17	0.15	0.19	6	12059	25	5	20	0	35
PDB_01251	-	-0.03	0.00	0.00	0	315	10	0	10	0	13
PDB_01255	-	0.73	0.64	0.84	36	12518	14	0	7	7	20
PDB_01260	-	0.92	0.92	0.92	23	1805	2	1	1	0	2
PDB_01262	-	0.00	0.00	0.00	0	190	0	0	0	0	8
PDB_01275	-	0.44	0.39	0.50	28	18280	31	0	28	3	43
PDB_01281	-	-0.04	0.00	0.00	0	365	13	0	13	0	14
PDB_01299	-	0.71	0.67	0.77	10	890	3	1	2	0	5
PDB_01309	-	0.12	0.15	0.10	6	9122	56	12	40	4	33
PDB_01313	-	-0.03	0.00	0.00	0	269	7	4	3	0	8
PDB_01325	-	0.96	0.92	1.00	11	265	0	0	0	0	1
PDB_01332	-	0.88	0.78	1.00	7	344	0	0	0	0	2
PDB_01337	-	-0.02	0.00	0.00	0	554	7	2	5	0	11
PDB_01338	-	-0.03	0.00	0.00	0	268	8	2	6	0	8
PDB_01340	-	1.00	1.00	1.00	8	292	0	0	0	0	0
RFA_00389	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00390	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00391	Hammerhead_3 links to Rfam database...	0.93	0.87	1.00	13	1418	2	0	0	2	2
RFA_00396	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	2	0	0	2	1
RFA_00402	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	0	0	0	0	0
RFA_00409	Hammerhead_3 links to Rfam database...	0.77	0.60	1.00	9	1422	1	0	0	1	6
RFA_00416	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1470	4	0	0	4	0
RFA_00420	-	1.00	1.00	1.00	15	3306	13	0	0	13	0
RFA_00425	Hammerhead_3 links to Rfam database...	0.93	0.87	1.00	13	1640	4	0	0	4	2
RFA_00427	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1471	3	0	0	3	1
RFA_00429	-	1.00	1.00	1.00	9	771	3	0	0	3	0
RFA_00433	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00434	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00436	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00440	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1470	2	0	0	2	0
RFA_00442	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00444	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1525	1	0	0	1	0
RFA_00446	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1471	3	0	0	3	1
RFA_00449	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1471	3	0	0	3	1
RFA_00582	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	5980	18	0	0	18	0
RFA_00583	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4935	6	0	0	6	0
RFA_00584	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	2911	9	0	0	9	0
RFA_00585	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4836	8	0	0	8	0
RFA_00586	Y_RNA links to Rfam database...	0.89	0.80	1.00	12	3904	7	0	0	7	3
RFA_00587	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4836	8	0	0	8	0
RFA_00588	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4545	13	0	0	13	0
RFA_00589	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4356	15	0	0	15	0
RFA_00590	-	0.89	0.80	1.00	12	5344	10	0	0	10	3
RFA_00594	Y_RNA links to Rfam database...	0.90	0.87	0.93	13	2761	4	0	1	3	2
RFA_00596	Y_RNA links to Rfam database...	0.00	0.00	0.00	0	5983	16	5	7	4	15
RFA_00603	Telomerase-cil links to Rfam database...	0.34	0.29	0.42	10	13506	15	4	10	1	25
RFA_00604	Telomerase-cil links to Rfam database...	0.71	0.66	0.77	23	13500	14	2	5	7	12
RFA_00605	Telomerase-cil links to Rfam database...	0.36	0.34	0.38	12	15193	31	3	17	11	23
RFA_00607	Telomerase-cil links to Rfam database...	0.65	0.61	0.69	22	17734	17	3	7	7	14
RFA_00609	Telomerase-cil links to Rfam database...	0.77	0.76	0.78	28	17919	18	2	6	10	9
RFA_00610	Telomerase-cil links to Rfam database...	0.56	0.57	0.55	21	17167	25	2	15	8	16
RFA_00611	Telomerase-cil links to Rfam database...	0.58	0.54	0.61	19	13010	12	3	9	0	16
RFA_00613	Telomerase-cil links to Rfam database...	0.15	0.14	0.16	5	12848	27	6	21	0	30
RFA_00615	Telomerase-cil links to Rfam database...	0.32	0.29	0.37	10	13339	18	4	13	1	25
RFA_00632	HDV_ribozyme links to Rfam database...	0.88	0.89	0.86	25	4066	4	3	1	0	3
RFA_00636	HDV_ribozyme links to Rfam database...	0.73	0.71	0.74	20	3978	7	5	2	0	8
RFA_00642	Vimentin3 links to Rfam database...	-0.01	0.00	0.00	0	2913	13	1	12	0	18
RFA_00643	Vimentin3 links to Rfam database...	-0.01	0.00	0.00	0	2196	15	1	14	0	18
RFA_00644	Vimentin3 links to Rfam database...	-0.01	0.00	0.00	0	2684	17	3	14	0	18
RFA_00645	Vimentin3 links to Rfam database...	-0.01	0.00	0.00	0	2403	12	3	9	0	18
RFA_00649	Vimentin3 links to Rfam database...	0.78	0.67	0.92	12	2132	1	0	1	0	6
RFA_00651	Vimentin3 links to Rfam database...	0.40	0.33	0.50	6	2068	6	0	6	0	12
RFA_00653	Vimentin3 links to Rfam database...	0.33	0.33	0.33	6	2127	12	3	9	0	12
RFA_00654	Vimentin3 links to Rfam database...	-0.01	0.00	0.00	0	2403	12	2	10	0	18
RFA_00658	Hammerhead_1 links to Rfam database...	0.59	0.50	0.70	7	1118	5	0	3	2	7
RFA_00659	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	1125	5	0	3	2	14
RFA_00664	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	980	11	0	10	1	14
RFA_00667	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	981	10	1	8	1	14
RFA_00668	Hammerhead_1 links to Rfam database...	0.50	0.43	0.60	6	980	4	0	4	0	8
RFA_00672	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	895	10	0	8	2	13
RFA_00673	Hammerhead_1 links to Rfam database...	0.47	0.36	0.63	5	1120	4	0	3	1	9
RFA_00674	Hammerhead_1 links to Rfam database...	0.96	0.93	1.00	13	1115	1	0	0	1	1
RFA_00675	Hammerhead_1 links to Rfam database...	0.28	0.29	0.29	4	976	10	1	9	0	10
RFA_00677	Hammerhead_1 links to Rfam database...	0.74	0.71	0.77	10	977	6	0	3	3	4
RFA_00678	Hammerhead_1 links to Rfam database...	0.53	0.29	1.00	4	942	0	0	0	0	10
RFA_00680	Hammerhead_1 links to Rfam database...	0.74	0.71	0.77	10	1115	6	0	3	3	4
RFA_00683	-	0.33	0.29	0.40	4	1025	6	0	6	0	10
RFA_00684	Hammerhead_1 links to Rfam database...	0.84	0.71	1.00	10	980	1	0	0	1	4
RFA_00685	Hammerhead_1 links to Rfam database...	0.47	0.36	0.63	5	982	4	0	3	1	9
RFA_00695	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	7007	29	4	10	15	14
RFA_00703	Hammerhead_1 links to Rfam database...	0.44	0.43	0.46	6	4265	19	1	6	12	8
RFA_00704	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	983	8	0	7	1	14
RFA_00705	Hammerhead_1 links to Rfam database...	0.74	0.71	0.77	10	1022	4	0	3	1	4
RFA_00706	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	1030	5	0	5	0	14
RFA_00707	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	1030	5	0	5	0	14
RFA_00708	Hammerhead_1 links to Rfam database...	0.40	0.29	0.57	4	1028	4	0	3	1	10
RFA_00709	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	984	7	0	6	1	14
RFA_00710	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	980	10	0	10	0	14
RFA_00711	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	1023	12	0	12	0	14
RFA_00715	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	936	10	0	10	0	14
RFA_00716	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	936	10	0	10	0	14
RFA_00717	Hammerhead_1 links to Rfam database...	0.69	0.64	0.75	9	891	3	0	3	0	5
RFA_00720	-	0.84	0.71	1.00	10	1166	0	0	0	0	4
RFA_00721	-	0.40	0.29	0.57	4	1169	3	0	3	0	10
RFA_00730	s2m links to Rfam database...	0.43	0.42	0.45	5	892	7	1	5	1	7
RFA_00731	s2m links to Rfam database...	0.48	0.42	0.56	5	894	5	1	3	1	7
RFA_00733	s2m links to Rfam database...	0.43	0.42	0.45	5	892	7	1	5	1	7
RFA_00734	s2m links to Rfam database...	0.67	0.58	0.78	7	894	3	0	2	1	5
RFA_00736	s2m links to Rfam database...	0.48	0.42	0.56	5	894	5	1	3	1	7
RFA_00737	s2m links to Rfam database...	0.43	0.42	0.45	5	892	7	0	6	1	7
RFA_00745	s2m links to Rfam database...	0.43	0.42	0.45	5	935	7	1	5	1	7
RFA_00749	s2m links to Rfam database...	0.48	0.42	0.56	5	894	5	1	3	1	7
RFA_00758	s2m links to Rfam database...	0.40	0.33	0.50	4	895	4	2	2	0	8
RFA_00762	s2m links to Rfam database...	0.31	0.33	0.31	4	890	9	2	7	0	8
RFA_00763	s2m links to Rfam database...	0.43	0.42	0.45	5	892	7	1	5	1	7
RFA_00764	s2m links to Rfam database...	0.43	0.42	0.45	5	892	7	1	5	1	7
RFA_00765	s2m links to Rfam database...	0.51	0.42	0.63	5	895	4	0	3	1	7
RFA_00767	Corona_pk3 links to Rfam database...	1.00	1.00	1.00	18	1873	0	0	0	0	0
RFA_00768	Corona_pk3 links to Rfam database...	1.00	1.00	1.00	18	1873	0	0	0	0	0
RFA_00769	Corona_pk3 links to Rfam database...	0.85	0.94	0.77	17	1931	5	4	1	0	1
RFA_00770	Corona_pk3 links to Rfam database...	0.88	0.78	1.00	14	2002	4	0	0	4	4
RFA_00773	Corona_pk3 links to Rfam database...	0.97	1.00	0.95	18	1934	5	1	0	4	0
RFA_00779	Corona_pk3 links to Rfam database...	0.97	0.94	1.00	17	1936	0	0	0	0	1
RFA_00781	Gammaretro_CES links to Rfam database...	0.97	0.94	1.00	30	5020	1	0	0	1	2
RFA_00786	Gammaretro_CES links to Rfam database...	0.21	0.19	0.25	6	5026	19	2	16	1	26
RFA_00791	Gammaretro_CES links to Rfam database...	0.60	0.56	0.64	18	5123	11	0	10	1	14
RFA_00792	Gammaretro_CES links to Rfam database...	0.97	0.94	1.00	30	5020	1	0	0	1	2
RFA_00801	Gammaretro_CES links to Rfam database...	0.69	0.63	0.77	20	5024	8	0	6	2	12
RFA_00808	RydC links to Rfam database...	1.00	1.00	1.00	16	2000	0	0	0	0	0
RFA_00809	RydC links to Rfam database...	0.79	0.81	0.76	13	2128	4	0	4	0	3
SPR_00007	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00009	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	0	0	0	0	0
SPR_00010	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00012	tRNA links to Rfam database...	0.97	0.95	1.00	19	2831	0	0	0	0	1
SPR_00013	tRNA links to Rfam database...	0.97	0.95	1.00	19	2831	0	0	0	0	1
SPR_00016	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00017	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00020	tRNA links to Rfam database...	0.92	0.85	1.00	17	2684	2	0	0	2	3
SPR_00022	tRNA links to Rfam database...	0.76	0.76	0.76	16	2905	5	2	3	0	5
SPR_00023	tRNA links to Rfam database...	0.74	0.86	0.64	18	2822	10	4	6	0	3
SPR_00025	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	1	0	0	1	0
SPR_00026	tRNA links to Rfam database...	0.90	0.81	1.00	17	2909	0	0	0	0	4
SPR_00027	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00029	tRNA links to Rfam database...	0.36	0.35	0.39	7	2610	11	5	6	0	13
SPR_00030	-	0.56	0.52	0.61	11	2467	8	0	7	1	10
SPR_00032	tRNA links to Rfam database...	0.85	0.76	0.94	16	2539	3	0	1	2	5
SPR_00033	tRNA links to Rfam database...	0.38	0.33	0.44	7	2612	9	2	7	0	14
SPR_00034	-	0.85	0.76	0.94	16	2468	3	0	1	2	5
SPR_00036	tRNA links to Rfam database...	0.89	0.80	1.00	16	2759	1	0	0	1	4
SPR_00044	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	0	0	0	0	0
SPR_00045	tRNA links to Rfam database...	0.77	0.77	0.77	17	2828	5	0	5	0	5
SPR_00060	tRNA links to Rfam database...	0.51	0.52	0.50	11	2753	13	3	8	2	10
SPR_00064	tRNA links to Rfam database...	0.52	0.57	0.48	12	2825	13	2	11	0	9
SPR_00065	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00066	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00068	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00070	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00074	tRNA links to Rfam database...	0.97	0.95	1.00	19	2831	1	0	0	1	1
SPR_00078	-	0.35	0.33	0.38	5	1878	8	1	7	0	10
SPR_00079	tRNA links to Rfam database...	0.83	0.68	1.00	13	2472	1	0	0	1	6
SPR_00080	tRNA links to Rfam database...	0.57	0.47	0.69	9	2402	4	1	3	0	10
SPR_00086	tRNA links to Rfam database...	0.76	0.76	0.76	16	2829	5	2	3	0	5
SPR_00087	tRNA links to Rfam database...	0.42	0.45	0.41	9	2828	14	4	9	1	11
SPR_00088	tRNA links to Rfam database...	0.42	0.45	0.41	9	2828	14	4	9	1	11
SPR_00089	tRNA links to Rfam database...	0.42	0.45	0.41	9	2828	14	4	9	1	11
SPR_00090	tRNA links to Rfam database...	0.95	0.90	1.00	18	2832	0	0	0	0	2
SPR_00091	tRNA links to Rfam database...	0.42	0.45	0.41	9	2828	14	4	9	1	11
SPR_00095	tRNA links to Rfam database...	0.76	0.76	0.76	16	2829	5	2	3	0	5
SPR_00111	tRNA links to Rfam database...	1.00	1.00	1.00	21	2680	1	0	0	1	0
SPR_00112	tRNA links to Rfam database...	1.00	1.00	1.00	21	2680	2	0	0	2	0
SPR_00113	tRNA links to Rfam database...	0.92	0.85	1.00	17	2758	1	0	0	1	3
SPR_00114	tRNA links to Rfam database...	1.00	1.00	1.00	21	2680	1	0	0	1	0
SPR_00115	tRNA links to Rfam database...	0.83	0.81	0.85	17	2681	3	1	2	0	4
SPR_00116	tRNA links to Rfam database...	1.00	1.00	1.00	21	2680	2	0	0	2	0
SPR_00117	tRNA links to Rfam database...	0.68	0.71	0.65	15	2827	8	1	7	0	6
SPR_00121	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	3	0	0	3	0
SPR_00124	tRNA links to Rfam database...	0.95	0.95	0.95	21	2534	3	0	1	2	1
SPR_00126	-	0.35	0.35	0.37	7	2061	12	5	7	0	13
SPR_00127	-	0.56	0.61	0.52	11	2394	12	2	8	2	7
SPR_00137	tRNA links to Rfam database...	0.84	0.86	0.82	18	2904	11	0	4	7	3
SPR_00138	tRNA links to Rfam database...	0.85	0.85	0.85	17	2906	4	0	3	1	3
SPR_00139	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	1	0	0	1	0
SPR_00141	tRNA links to Rfam database...	0.89	0.80	1.00	16	2759	1	0	0	1	4
SPR_00142	-	0.59	0.47	0.75	9	2616	4	1	2	1	10
SPR_00153	tRNA links to Rfam database...	0.40	0.38	0.42	8	2907	11	3	8	0	13
SPR_00155	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00156	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00163	tRNA links to Rfam database...	0.90	0.81	1.00	17	2833	2	0	0	2	4
SPR_00164	tRNA links to Rfam database...	0.90	0.81	1.00	17	2909	0	0	0	0	4
SPR_00166	-	0.89	0.79	1.00	15	2541	2	0	0	2	4
SPR_00167	tRNA links to Rfam database...	0.92	0.85	1.00	17	2539	2	0	0	2	3
SPR_00176	tRNA links to Rfam database...	0.53	0.55	0.52	11	2829	10	2	8	0	9
SPR_00177	tRNA links to Rfam database...	0.55	0.57	0.55	12	2828	10	3	7	0	9
SPR_00178	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00183	-	0.63	0.55	0.73	11	2835	5	0	4	1	9
SPR_00191	tRNA links to Rfam database...	0.18	0.19	0.19	4	2829	17	4	13	0	17
SPR_00200	tRNA links to Rfam database...	0.74	0.76	0.73	16	2828	6	3	3	0	5
SPR_00209	tRNA links to Rfam database...	0.83	0.89	0.77	17	3548	6	3	2	1	2
SPR_00213	tRNA links to Rfam database...	0.55	0.62	0.50	13	3802	13	6	7	0	8
SPR_00215	tRNA links to Rfam database...	0.84	0.75	0.94	15	3554	5	0	1	4	5
SPR_00218	tRNA links to Rfam database...	0.50	0.60	0.43	12	3713	18	8	8	2	8
SPR_00219	tRNA links to Rfam database...	1.00	1.00	1.00	20	3721	8	0	0	8	0
SPR_00220	tRNA links to Rfam database...	0.24	0.25	0.24	5	3720	20	4	12	4	15
SPR_00221	tRNA links to Rfam database...	0.80	0.86	0.75	18	3717	6	5	1	0	3
SPR_00223	tRNA links to Rfam database...	0.84	0.75	0.94	15	3554	5	0	1	4	5
SPR_00224	tRNA links to Rfam database...	1.00	1.00	1.00	20	3721	3	0	0	3	0
SPR_00225	tRNA links to Rfam database...	0.76	0.81	0.71	17	3717	7	1	6	0	4
SPR_00226	tRNA links to Rfam database...	0.78	0.86	0.72	18	3630	7	6	1	0	3
SPR_00227	tRNA links to Rfam database...	0.82	0.86	0.78	18	3463	5	4	1	0	3
SPR_00228	tRNA links to Rfam database...	1.00	1.00	1.00	20	3808	1	0	0	1	0
SPR_00229	tRNA links to Rfam database...	0.90	0.86	0.95	18	3384	1	0	1	0	3
SPR_00230	tRNA links to Rfam database...	0.90	0.86	0.95	18	3551	1	0	1	0	3
SPR_00235	tRNA links to Rfam database...	0.49	0.57	0.43	12	3713	16	7	9	0	9
SPR_00236	tRNA links to Rfam database...	0.75	0.75	0.75	15	3550	5	1	4	0	5
SPR_00246	tRNA links to Rfam database...	1.00	1.00	1.00	20	2681	2	0	0	2	0
SPR_00263	tRNA links to Rfam database...	0.74	0.76	0.73	16	3548	11	1	5	5	5
SPR_00271	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00273	tRNA links to Rfam database...	0.76	0.76	0.76	16	2829	6	0	5	1	5
SPR_00276	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00277	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00279	tRNA links to Rfam database...	0.60	0.52	0.69	11	2910	5	0	5	0	10
SPR_00281	-	0.39	0.41	0.39	7	1998	11	5	6	0	10
SPR_00289	tRNA links to Rfam database...	0.84	0.75	0.94	15	2910	4	0	1	3	5
SPR_00294	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00295	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	1	0	0	1	0
SPR_00297	tRNA links to Rfam database...	0.78	0.76	0.80	16	2755	4	1	3	0	5
SPR_00298	tRNA links to Rfam database...	1.00	1.00	1.00	20	2755	0	0	0	0	0
SPR_00309	tRNA links to Rfam database...	0.73	0.76	0.70	16	2903	9	2	5	2	5
SPR_00314	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	2	0	0	2	0
SPR_00315	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	2	0	0	2	0
SPR_00316	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	2	0	0	2	0
SPR_00317	tRNA links to Rfam database...	0.56	0.60	0.52	12	2903	11	5	6	0	8
SPR_00318	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	2	0	0	2	0
SPR_00320	tRNA links to Rfam database...	0.89	0.79	1.00	15	2760	2	0	0	2	4
SPR_00321	tRNA links to Rfam database...	0.76	0.76	0.76	16	2982	5	3	2	0	5
SPR_00327	tRNA links to Rfam database...	0.87	0.95	0.80	20	2978	5	4	1	0	1
SPR_00329	tRNA links to Rfam database...	0.84	0.86	0.82	18	2828	7	0	4	3	3
SPR_00331	tRNA links to Rfam database...	0.73	0.75	0.71	15	2754	6	2	4	0	5
SPR_00333	tRNA links to Rfam database...	0.54	0.62	0.48	13	2748	15	4	10	1	8
SPR_00339	tRNA links to Rfam database...	0.30	0.33	0.28	7	2750	18	6	12	0	14
SPR_00352	tRNA links to Rfam database...	0.71	0.76	0.67	16	2902	8	3	5	0	5
SPR_00353	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00356	tRNA links to Rfam database...	0.85	0.76	0.94	16	2758	1	0	1	0	5
SPR_00357	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00358	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00359	tRNA links to Rfam database...	0.95	0.95	0.95	21	2904	1	0	1	0	1
SPR_00360	tRNA links to Rfam database...	0.85	0.77	0.94	17	2683	1	0	1	0	5
SPR_00362	-	0.56	0.54	0.58	7	1419	6	4	1	1	6
SPR_00363	-	-0.01	0.00	0.00	0	1586	10	1	9	0	15
SPR_00364	-	1.00	1.00	1.00	20	2191	2	0	0	2	0
SPR_00365	-	0.60	0.59	0.62	13	2535	8	1	7	0	9
SPR_00366	-	0.81	0.75	0.88	15	2539	2	1	1	0	5
SPR_00367	-	0.69	0.59	0.81	13	2469	3	0	3	0	9
SPR_00369	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	0	0	0	0	0
SPR_00370	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	0	0	0	0	0
SPR_00373	tRNA links to Rfam database...	0.74	0.76	0.73	16	2828	6	2	4	0	5
SPR_00374	tRNA links to Rfam database...	0.65	0.71	0.60	15	2825	10	3	7	0	6
SPR_00385	tRNA links to Rfam database...	0.45	0.55	0.37	11	4248	20	9	10	1	9
SPR_00386	tRNA links to Rfam database...	0.91	1.00	0.83	20	4162	8	4	0	4	0
SPR_00388	tRNA links to Rfam database...	0.85	0.81	0.89	17	4167	12	0	2	10	4
SPR_00389	tRNA links to Rfam database...	0.83	0.85	0.81	17	3984	10	1	3	6	3
SPR_00390	tRNA links to Rfam database...	0.82	0.86	0.78	18	4255	12	2	3	7	3
SPR_00391	tRNA links to Rfam database...	0.92	1.00	0.84	21	3803	9	4	0	5	0
SPR_00393	tRNA links to Rfam database...	0.81	0.85	0.77	17	3806	11	2	3	6	3
SPR_00394	tRNA links to Rfam database...	0.87	0.81	0.94	17	3637	8	0	1	7	4
SPR_00395	tRNA links to Rfam database...	0.47	0.57	0.39	12	3974	20	11	8	1	9
SPR_00398	-	-0.01	0.00	0.00	0	2193	20	2	16	2	13
SPR_00399	-	0.67	0.75	0.60	12	2465	9	4	4	1	4
SPR_00402	tRNA links to Rfam database...	1.00	1.00	1.00	21	2535	2	0	0	2	0
SPR_00412	tRNA links to Rfam database...	0.95	0.95	0.95	20	3634	5	0	1	4	1
SPR_00414	tRNA links to Rfam database...	0.95	0.95	0.95	20	3549	5	0	1	4	1
SPR_00415	tRNA links to Rfam database...	0.62	0.57	0.67	12	3552	10	3	3	4	9
SPR_00416	tRNA links to Rfam database...	0.44	0.48	0.42	10	3546	19	2	12	5	11
SPR_00417	tRNA links to Rfam database...	0.60	0.55	0.67	12	3552	10	0	6	4	10
SPR_00418	tRNA links to Rfam database...	0.60	0.55	0.67	12	3552	10	0	6	4	10
SPR_00426	tRNA links to Rfam database...	1.00	1.00	1.00	21	2982	4	0	0	4	0
SPR_00434	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00435	tRNA links to Rfam database...	0.76	0.76	0.76	16	2829	7	0	5	2	5
SPR_00436	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	2	0	0	2	0
SPR_00437	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	2	0	0	2	0
SPR_00438	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	0	0	0	0	0
SPR_00439	tRNA links to Rfam database...	0.89	0.80	1.00	16	2685	2	0	0	2	4
SPR_00445	tRNA links to Rfam database...	0.77	0.85	0.71	17	2979	8	1	6	1	3
SPR_00452	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00455	tRNA links to Rfam database...	0.31	0.33	0.30	7	2827	16	5	11	0	14
SPR_00456	tRNA links to Rfam database...	0.57	0.57	0.57	12	2829	12	1	8	3	9
SPR_00458	tRNA links to Rfam database...	0.95	0.95	0.95	19	2830	1	0	1	0	1
SPR_00459	tRNA links to Rfam database...	0.61	0.60	0.63	12	2756	7	2	5	0	8
SPR_00461	tRNA links to Rfam database...	0.47	0.47	0.47	9	2537	11	1	9	1	10
SPR_00462	tRNA links to Rfam database...	0.61	0.58	0.65	11	2398	6	3	3	0	8
SPR_00467	tRNA links to Rfam database...	0.85	0.85	0.85	17	2830	4	0	3	1	3
SPR_00476	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	0	0	0	0	0
SPR_00478	tRNA links to Rfam database...	0.60	0.57	0.63	12	2756	7	4	3	0	9
SPR_00479	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00481	tRNA links to Rfam database...	0.39	0.33	0.47	7	2760	11	0	8	3	14
SPR_00482	tRNA links to Rfam database...	0.90	0.81	1.00	17	2684	0	0	0	0	4
SPR_00483	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00487	tRNA links to Rfam database...	0.90	0.82	1.00	18	2683	0	0	0	0	4
SPR_00489	tRNA links to Rfam database...	0.90	0.81	1.00	17	2684	2	0	0	2	4
SPR_00493	tRNA links to Rfam database...	0.68	0.68	0.68	15	2753	7	2	5	0	7
SPR_00496	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	0	0	0	0	0
SPR_00497	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	0	0	0	0	0
SPR_00498	tRNA links to Rfam database...	0.83	0.85	0.81	17	2982	6	0	4	2	3
SPR_00502	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00504	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	0	0	0	0	0
SPR_00505	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00506	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00509	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00512	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00513	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00517	tRNA links to Rfam database...	0.79	0.75	0.83	15	2832	6	0	3	3	5
SPR_00518	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00519	tRNA links to Rfam database...	0.98	0.95	1.00	20	2536	0	0	0	0	1
SPR_00520	tRNA links to Rfam database...	0.29	0.28	0.31	5	2540	11	4	7	0	13
SPR_00533	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	0	0	0	0	0
SPR_00541	tRNA links to Rfam database...	0.50	0.57	0.44	12	3459	15	6	9	0	9
SPR_00542	tRNA links to Rfam database...	1.00	1.00	1.00	21	3549	3	0	0	3	0
SPR_00544	tRNA links to Rfam database...	0.53	0.60	0.48	12	3545	17	4	9	4	8
SPR_00548	tRNA links to Rfam database...	0.90	0.86	0.95	18	3384	1	0	1	0	3
SPR_00550	tRNA links to Rfam database...	0.35	0.32	0.39	7	3810	15	0	11	4	15
SPR_00552	tRNA links to Rfam database...	0.50	0.47	0.53	9	2684	10	1	7	2	10
SPR_00557	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00561	tRNA links to Rfam database...	0.40	0.43	0.39	9	2827	14	1	13	0	12
SPR_00590	tRNA links to Rfam database...	0.83	0.85	0.81	17	2982	6	1	3	2	3
SPR_00593	tRNA links to Rfam database...	0.39	0.37	0.41	7	2758	10	2	8	0	12
SPR_00595	tRNA links to Rfam database...	0.78	0.76	0.80	16	2755	4	2	2	0	5
SPR_00598	tRNA links to Rfam database...	0.87	0.81	0.94	17	2985	2	0	1	1	4
SPR_00610	tRNA links to Rfam database...	0.87	0.81	0.94	17	2538	2	0	1	1	4
SPR_00620	tRNA links to Rfam database...	0.79	0.81	0.77	17	2981	6	2	3	1	4
SPR_00629	-	0.37	0.40	0.35	6	1874	11	6	5	0	9
SPR_00632	tRNA links to Rfam database...	0.92	0.85	1.00	17	2539	0	0	0	0	3
SPR_00633	tRNA links to Rfam database...	0.92	0.85	1.00	17	2539	0	0	0	0	3
SPR_00721	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	2	0	0	2	0
SPR_00722	tRNA links to Rfam database...	0.74	0.80	0.70	16	2903	7	5	2	0	4
SPR_00750	tRNA links to Rfam database...	0.89	0.79	1.00	15	2541	2	0	0	2	4
SPR_00758	tRNA links to Rfam database...	0.58	0.57	0.60	12	2983	8	1	7	0	9
SPR_00760	tRNA links to Rfam database...	1.00	1.00	1.00	21	3549	0	0	0	0	0
SPR_00768	-	0.65	0.67	0.63	12	2061	9	3	4	2	6
SPR_00777	tRNA links to Rfam database...	0.53	0.55	0.52	11	2607	11	3	7	1	9
SPR_00810	tRNA links to Rfam database...	0.89	0.89	0.89	17	3551	9	1	1	7	2
SPR_00816	tRNA links to Rfam database...	0.31	0.35	0.28	7	3461	21	5	13	3	13
SPR_00832	-	0.82	0.67	1.00	10	1643	0	0	0	0	5
SPR_00867	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00868	tRNA links to Rfam database...	0.95	0.95	0.95	20	2905	2	0	1	1	1
SPR_00882	tRNA links to Rfam database...	1.00	1.00	1.00	20	2608	0	0	0	0	0
SPR_00912	tRNA links to Rfam database...	0.44	0.48	0.42	10	2979	18	3	11	4	11
SPR_00913	tRNA links to Rfam database...	0.31	0.33	0.30	7	2980	19	3	13	3	14
SPR_00932	tRNA links to Rfam database...	0.87	0.81	0.94	17	2832	2	0	1	1	4
SPR_00938	-	-0.01	0.00	0.00	0	1634	19	5	14	0	15
SPR_00943	tRNA links to Rfam database...	0.85	0.85	0.85	17	2536	5	0	3	2	3
SPR_00957	tRNA links to Rfam database...	0.78	0.76	0.80	16	2983	5	0	4	1	5
SPR_01040	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	1	0	0	1	0
SPR_01051	tRNA links to Rfam database...	0.29	0.33	0.27	7	2530	19	4	15	0	14
SPR_01088	tRNA links to Rfam database...	0.53	0.57	0.50	12	2902	12	4	8	0	9
SPR_01095	tRNA links to Rfam database...	0.76	0.76	0.76	16	2829	7	0	5	2	5
SPR_01103	-	0.62	0.67	0.59	10	1753	9	2	5	2	5
SPR_01106	tRNA links to Rfam database...	0.51	0.52	0.50	11	2534	11	3	8	0	10
SPR_01117	tRNA links to Rfam database...	1.00	1.00	1.00	21	2982	1	0	0	1	0
SPR_01143	tRNA links to Rfam database...	0.31	0.33	0.30	7	2533	16	3	13	0	14
SPR_01157	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	1	0	0	1	0
SRP_00001	Bacteria_large_SRP links to Rfam database...	0.27	0.25	0.29	10	6752	24	3	21	0	30
SRP_00005	-	0.17	0.17	0.19	4	3984	17	3	14	0	20
SRP_00007	-	0.20	0.20	0.21	9	11892	36	5	29	2	36
SRP_00008	Bacteria_small_SRP links to Rfam database...	0.61	0.60	0.63	15	2902	9	2	7	0	10
SRP_00020	Bacteria_small_SRP links to Rfam database...	0.73	0.73	0.73	24	5532	10	1	8	1	9
SRP_00038	Bacteria_small_SRP links to Rfam database...	0.18	0.18	0.19	6	5018	26	2	24	0	27
SRP_00040	Bacteria_small_SRP links to Rfam database...	0.72	0.71	0.73	22	5535	9	0	8	1	9
SRP_00042	Bacteria_small_SRP links to Rfam database...	0.41	0.36	0.47	9	3986	12	1	9	2	16
SRP_00043	Bacteria_small_SRP links to Rfam database...	0.25	0.24	0.27	7	5024	22	4	15	3	22
SRP_00044	Bacteria_small_SRP links to Rfam database...	0.52	0.53	0.52	17	6072	17	3	13	1	15
SRP_00045	-	0.40	0.41	0.40	18	11890	28	5	22	1	26
SRP_00046	Bacteria_small_SRP links to Rfam database...	0.57	0.56	0.58	18	4722	14	1	12	1	14
SRP_00051	Bacteria_small_SRP links to Rfam database...	0.27	0.30	0.25	9	5424	29	9	18	2	21
SRP_00054	Bacteria_small_SRP links to Rfam database...	0.24	0.25	0.24	8	5532	25	3	22	0	24
SRP_00056	Bacteria_small_SRP links to Rfam database...	0.67	0.65	0.69	24	6406	11	2	9	0	13
SRP_00057	Bacteria_small_SRP links to Rfam database...	0.74	0.69	0.80	24	6298	7	1	5	1	11
SRP_00058	Bacteria_small_SRP links to Rfam database...	0.38	0.38	0.38	13	5744	23	4	17	2	21
SRP_00067	Bacteria_small_SRP links to Rfam database...	0.39	0.37	0.42	14	5745	19	2	17	0	24
SRP_00072	Bacteria_small_SRP links to Rfam database...	0.25	0.28	0.24	8	6294	26	3	23	0	21
SRP_00074	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6522	36	4	29	3	29
SRP_00075	Bacteria_small_SRP links to Rfam database...	0.24	0.24	0.26	8	5534	25	1	22	2	26
SRP_00077	Bacteria_small_SRP links to Rfam database...	0.37	0.38	0.37	14	6632	24	4	20	0	23
SRP_00081	Bacteria_small_SRP links to Rfam database...	0.38	0.39	0.39	12	5534	19	2	17	0	19
SRP_00083	-	0.51	0.47	0.56	14	4826	11	1	10	0	16
SRP_00084	Bacteria_small_SRP links to Rfam database...	0.65	0.56	0.76	19	5435	6	2	4	0	15
SRP_00093	-	0.00	0.00	0.00	0	14168	42	9	19	14	25
SRP_00094	Bacteria_small_SRP links to Rfam database...	0.61	0.63	0.60	15	4070	12	1	9	2	9
SRP_00095	Bacteria_small_SRP links to Rfam database...	0.26	0.28	0.26	7	3978	20	5	15	0	18
SRP_00098	Bacteria_small_SRP links to Rfam database...	0.36	0.35	0.38	13	6407	22	2	19	1	24
SRP_00101	-	0.57	0.56	0.58	14	3546	12	0	10	2	11
SRP_00105	Bacteria_small_SRP links to Rfam database...	0.30	0.29	0.32	10	5534	21	0	21	0	24
SRP_00106	Bacteria_large_SRP links to Rfam database...	0.44	0.52	0.38	13	5219	24	9	12	3	12
SRP_00107	Bacteria_small_SRP links to Rfam database...	0.13	0.16	0.12	3	3630	24	4	18	2	16
SRP_00119	-	0.12	0.12	0.14	6	12998	38	3	34	1	45
SRP_00121	Bacteria_small_SRP links to Rfam database...	0.53	0.48	0.60	12	4258	8	1	7	0	13
SRP_00128	Bacteria_small_SRP links to Rfam database...	0.45	0.44	0.46	16	6751	19	1	18	0	20
SRP_00132	Bacteria_small_SRP links to Rfam database...	0.35	0.34	0.36	10	4823	21	2	16	3	19
SRP_00134	Bacteria_large_SRP links to Rfam database...	0.16	0.17	0.16	5	5964	29	6	20	3	24
SRP_00135	-	0.05	0.06	0.05	3	14307	55	6	49	0	48
SRP_00137	Bacteria_small_SRP links to Rfam database...	0.37	0.40	0.36	10	4158	18	7	11	0	15
SRP_00138	-	0.54	0.52	0.56	14	3980	13	2	9	2	13
SRP_00139	-	0.30	0.33	0.29	4	2131	10	6	4	0	8
SRP_00140	-	0.73	0.69	0.77	27	8480	15	1	7	7	12
SRP_00141	Bacteria_small_SRP links to Rfam database...	0.84	0.80	0.87	33	6290	5	1	4	0	8
SRP_00145	Bacteria_small_SRP links to Rfam database...	0.99	0.98	1.00	39	6289	0	0	0	0	1
SRP_00146	Bacteria_small_SRP links to Rfam database...	0.37	0.33	0.41	12	5224	17	2	15	0	24
SRP_00161	Bacteria_small_SRP links to Rfam database...	0.39	0.41	0.38	9	2826	16	3	12	1	13
SRP_00162	Bacteria_small_SRP links to Rfam database...	0.51	0.48	0.55	11	2906	10	2	7	1	12
SRP_00163	Bacteria_small_SRP links to Rfam database...	0.27	0.27	0.28	7	3461	19	4	14	1	19
SRP_00164	Bacteria_small_SRP links to Rfam database...	0.28	0.29	0.29	10	6868	25	3	22	0	25
SRP_00170	Bacteria_small_SRP links to Rfam database...	0.37	0.36	0.39	9	4072	15	4	10	1	16
SRP_00193	-	0.21	0.19	0.23	7	6872	25	0	24	1	29
SRP_00194	Bacteria_small_SRP links to Rfam database...	0.39	0.33	0.47	7	3225	8	0	8	0	14
SRP_00196	-	0.26	0.25	0.28	7	4631	19	3	15	1	21
SRP_00200	Bacteria_small_SRP links to Rfam database...	0.87	0.78	0.97	28	6874	1	0	1	0	8
SRP_00209	Bacteria_small_SRP links to Rfam database...	0.47	0.48	0.46	13	4628	15	3	12	0	14
SRP_00213	Bacteria_small_SRP links to Rfam database...	0.37	0.40	0.36	10	4158	18	7	11	0	15
SRP_00214	-	0.40	0.33	0.50	8	3065	8	0	8	0	16
SRP_00215	Bacteria_small_SRP links to Rfam database...	0.58	0.52	0.65	13	3220	7	2	5	0	12
SRP_00216	Bacteria_small_SRP links to Rfam database...	0.75	0.67	0.86	18	3382	3	1	2	0	9
SRP_00217	Bacteria_small_SRP links to Rfam database...	0.34	0.29	0.41	7	3304	11	2	8	1	17
SRP_00219	Bacteria_small_SRP links to Rfam database...	0.56	0.52	0.60	12	3301	9	0	8	1	11
SRP_00221	-	0.42	0.33	0.54	7	3390	6	1	5	0	14
SRP_00222	Bacteria_small_SRP links to Rfam database...	0.42	0.44	0.41	11	3054	16	2	14	0	14
SRP_00223	-	0.18	0.15	0.23	3	3390	10	0	10	0	17
SRP_00227	Bacteria_small_SRP links to Rfam database...	0.63	0.58	0.69	18	5125	8	0	8	0	13
SRP_00229	Bacteria_small_SRP links to Rfam database...	0.37	0.37	0.37	10	5226	17	4	13	0	17
SRP_00231	Bacteria_small_SRP links to Rfam database...	0.62	0.59	0.67	20	5430	10	2	8	0	14
SRP_00233	Bacteria_small_SRP links to Rfam database...	0.24	0.24	0.25	8	5119	25	1	23	1	25
SRP_00235	-	0.42	0.36	0.50	12	5026	12	3	9	0	21
SRP_00243	Bacteria_small_SRP links to Rfam database...	0.34	0.29	0.41	9	5129	13	2	11	0	22
SRP_00244	Bacteria_small_SRP links to Rfam database...	0.78	0.69	0.87	27	6872	5	2	2	1	12
SRP_00245	-	0.28	0.36	0.22	8	13004	43	6	23	14	14
SRP_00250	Bacteria_small_SRP links to Rfam database...	0.51	0.50	0.53	18	6752	18	2	14	2	18
SRP_00251	Bacteria_small_SRP links to Rfam database...	0.66	0.67	0.65	24	6984	13	0	13	0	12
SRP_00256	-	-0.01	0.00	0.00	0	4245	34	5	28	1	22
SRP_00266	Bacteria_small_SRP links to Rfam database...	0.68	0.55	0.84	16	4637	3	0	3	0	13
SRP_00268	Bacteria_small_SRP links to Rfam database...	0.38	0.37	0.40	10	4161	15	3	12	0	17
SRP_00269	Bacteria_small_SRP links to Rfam database...	0.43	0.42	0.44	14	5018	19	2	16	1	19
SRP_00270	Bacteria_small_SRP links to Rfam database...	0.26	0.26	0.27	8	4626	23	2	20	1	23
SRP_00271	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	3217	23	3	20	0	24
SRP_00273	Bacteria_small_SRP links to Rfam database...	0.89	0.88	0.90	35	6747	5	2	2	1	5
SRP_00274	Bacteria_small_SRP links to Rfam database...	0.83	0.79	0.88	30	6869	4	1	3	0	8
SRP_00284	-	0.57	0.55	0.59	16	3714	11	1	10	0	13
SRP_00285	Bacteria_small_SRP links to Rfam database...	0.38	0.37	0.41	11	3714	16	1	15	0	19
SRP_00295	Bacteria_small_SRP links to Rfam database...	0.74	0.74	0.74	28	6865	10	2	8	0	10
SRP_00303	Bacteria_small_SRP links to Rfam database...	0.35	0.34	0.37	11	6640	19	1	18	0	21
SRP_00307	-	0.24	0.23	0.26	10	12841	29	7	22	0	33
SRP_00310	Bacteria_small_SRP links to Rfam database...	0.60	0.57	0.65	13	2906	8	1	6	1	10
SRP_00312	Bacteria_small_SRP links to Rfam database...	0.35	0.37	0.33	10	4156	20	7	13	0	17
SRP_00315	Bacteria_small_SRP links to Rfam database...	0.50	0.43	0.59	10	2909	7	1	6	0	13
SRP_00318	Bacteria_small_SRP links to Rfam database...	0.50	0.43	0.59	10	2986	7	1	6	0	13
SRP_00324	Bacteria_small_SRP links to Rfam database...	0.57	0.62	0.53	18	5322	16	5	11	0	11
SRP_00325	Bacteria_small_SRP links to Rfam database...	0.75	0.73	0.77	24	4340	8	0	7	1	9
SRP_00326	Bacteria_small_SRP links to Rfam database...	0.60	0.58	0.62	18	5021	12	3	8	1	13
SRP_00333	Bacteria_small_SRP links to Rfam database...	0.70	0.65	0.76	22	5122	7	3	4	0	12
SRP_00338	Bacteria_small_SRP links to Rfam database...	0.75	0.75	0.75	27	5424	9	3	6	0	9
SRP_00341	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	4731	22	4	18	0	31
SRP_00342	Bacteria_small_SRP links to Rfam database...	0.22	0.24	0.21	6	3977	22	5	17	0	19
SRP_00350	Bacteria_small_SRP links to Rfam database...	0.34	0.33	0.36	9	3891	16	6	10	0	18
SRP_00356	Bacteria_small_SRP links to Rfam database...	0.47	0.43	0.52	13	5025	12	4	8	0	17
SRP_00357	Bacteria_small_SRP links to Rfam database...	0.46	0.47	0.46	17	5319	20	3	17	0	19
SRP_00358	Bacteria_small_SRP links to Rfam database...	0.39	0.37	0.41	13	6296	19	1	18	0	22
SRP_00363	Bacteria_small_SRP links to Rfam database...	0.86	0.77	0.96	23	4729	3	0	1	2	7
SRP_00365	Bacteria_small_SRP links to Rfam database...	0.30	0.30	0.31	8	3377	18	2	16	0	19
SRP_00367	Bacteria_small_SRP links to Rfam database...	0.45	0.43	0.47	15	6754	17	0	17	0	20
SRP_00369	Bacteria_small_SRP links to Rfam database...	0.60	0.54	0.68	19	5750	9	0	9	0	16
SRP_00383	Bacteria_small_SRP links to Rfam database...	0.13	0.13	0.14	3	3219	18	2	16	0	21
TMR_00272	-	1.00	1.00	1.00	31	5120	0	0	0	0	0

^top

Performance of Vsfold5 - scored lower in this pairwise comparison

1. Total counts & total scores for Vsfold5

Total Base Pair Counts
Total TP	8806
Total TN	2892791
Total FP	9175
Total FP CONTRA	1268
Total FP INCONS	7130
Total FP COMP	777
Total FN	10742

Total Scores
MCC	0.477
Average MCC ± 95% Confidence Intervals	0.521 ± 0.024
Sensitivity	0.450
Positive Predictive Value	0.512
Nr of predictions	882

^top

2. Individual counts for Vsfold5 [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00051	-	0.52	0.54	0.51	22	19067	34	1	20	13	19
ASE_00251	RNaseP_nuc links to Rfam database...	0.98	0.95	1.00	41	17725	17	0	0	17	2
CRW_00548	5S_rRNA links to Rfam database...	0.10	0.11	0.11	4	7344	33	2	31	0	34
CRW_00552	5S_rRNA links to Rfam database...	0.16	0.15	0.18	6	7107	28	6	21	1	33
CRW_00555	5S_rRNA links to Rfam database...	0.41	0.38	0.45	15	7593	18	1	17	0	25
CRW_00567	5S_rRNA links to Rfam database...	0.13	0.13	0.15	5	7470	28	4	24	0	35
CRW_00570	5S_rRNA links to Rfam database...	0.85	0.81	0.88	30	6869	4	0	4	0	7
CRW_00573	5S_rRNA links to Rfam database...	0.08	0.08	0.10	3	7111	26	1	25	0	37
CRW_01482	5S_rRNA links to Rfam database...	0.20	0.19	0.21	9	8735	34	2	32	0	38
CRW_01484	5S_rRNA links to Rfam database...	0.44	0.38	0.52	15	7474	14	0	14	0	24
CRW_01485	5S_rRNA links to Rfam database...	0.43	0.44	0.44	17	7464	22	3	19	0	22
CRW_01487	5S_rRNA links to Rfam database...	0.33	0.32	0.36	13	7467	23	2	21	0	28
CRW_01489	5S_rRNA links to Rfam database...	0.66	0.59	0.74	23	7472	8	2	6	0	16
CRW_01491	5S_rRNA links to Rfam database...	0.18	0.16	0.21	7	8352	26	1	25	0	36
CRW_01492	5S_rRNA links to Rfam database...	0.76	0.71	0.81	30	7589	9	0	7	2	12
CRW_01493	5S_rRNA links to Rfam database...	0.50	0.44	0.58	19	7842	14	4	10	0	24
CRW_01494	5S_rRNA links to Rfam database...	0.71	0.63	0.81	25	7109	7	0	6	1	15
CRW_01496	5S_rRNA links to Rfam database...	0.29	0.27	0.32	12	8091	28	2	23	3	32
CRW_01497	5S_rRNA links to Rfam database...	0.49	0.43	0.57	17	7110	14	0	13	1	23
CRW_01498	5S_rRNA links to Rfam database...	0.53	0.51	0.55	22	8088	18	3	15	0	21
CRW_01499	5S_rRNA links to Rfam database...	0.16	0.15	0.18	6	7967	28	0	28	0	35
CRW_01500	5S_rRNA links to Rfam database...	0.32	0.29	0.35	11	7719	20	2	18	0	27
CRW_01501	5S_rRNA links to Rfam database...	0.48	0.42	0.54	19	8480	18	0	16	2	26
CRW_01502	5S_rRNA links to Rfam database...	0.45	0.43	0.47	20	8342	25	1	22	2	26
CRW_01504	5S_rRNA links to Rfam database...	0.32	0.30	0.34	13	7837	25	4	21	0	30
CRW_01507	5S_rRNA links to Rfam database...	0.73	0.68	0.78	28	7467	10	3	5	2	13
CRW_01508	5S_rRNA links to Rfam database...	0.15	0.14	0.17	6	7966	29	4	25	0	36
CRW_01521	5S_rRNA links to Rfam database...	0.41	0.39	0.44	14	6871	19	2	16	1	22
CRW_01532	5S_rRNA links to Rfam database...	0.00	0.00	0.00	0	7109	31	3	28	0	37
CRW_01533	5S_rRNA links to Rfam database...	0.25	0.24	0.27	9	7107	25	1	23	1	28
CRW_01534	5S_rRNA links to Rfam database...	0.36	0.35	0.38	13	7106	21	4	17	0	24
CRW_01535	5S_rRNA links to Rfam database...	0.33	0.35	0.33	13	7100	28	2	25	1	24
CRW_01536	5S_rRNA links to Rfam database...	0.50	0.46	0.55	17	6990	14	1	13	0	20
CRW_01537	5S_rRNA links to Rfam database...	0.17	0.16	0.19	6	7109	26	3	22	1	31
CRW_01539	5S_rRNA links to Rfam database...	0.00	0.00	0.00	0	7110	33	3	27	3	37
CRW_01540	5S_rRNA links to Rfam database...	0.23	0.22	0.24	8	7107	25	4	21	0	29
CRW_01541	5S_rRNA links to Rfam database...	0.49	0.43	0.55	16	7111	14	1	12	1	21
CRW_01542	5S_rRNA links to Rfam database...	0.37	0.35	0.39	13	7107	20	3	17	0	24
CRW_01544	5S_rRNA links to Rfam database...	0.49	0.46	0.53	17	7108	16	0	15	1	20
CRW_01548	5S_rRNA links to Rfam database...	0.34	0.35	0.33	13	6982	27	1	25	1	24
CRW_01555	5S_rRNA links to Rfam database...	0.13	0.14	0.13	5	9007	33	5	28	0	32
CRW_01556	5S_rRNA links to Rfam database...	0.73	0.70	0.76	26	7106	9	0	8	1	11
CRW_01557	5S_rRNA links to Rfam database...	0.38	0.38	0.38	14	7103	23	3	20	0	23
CRW_01559	5S_rRNA links to Rfam database...	0.44	0.43	0.44	16	7224	23	1	19	3	21
CRW_01562	5S_rRNA links to Rfam database...	0.00	0.00	0.00	0	7109	31	2	29	0	37
CRW_01563	5S_rRNA links to Rfam database...	0.44	0.38	0.52	14	6876	13	3	10	0	23
CRW_01566	5S_rRNA links to Rfam database...	0.62	0.57	0.68	21	7109	11	2	8	1	16
CRW_01568	5S_rRNA links to Rfam database...	0.24	0.24	0.24	9	7102	29	1	28	0	28
CRW_01569	5S_rRNA links to Rfam database...	0.55	0.51	0.59	19	7108	15	0	13	2	18
CRW_01570	5S_rRNA links to Rfam database...	0.34	0.32	0.36	12	7107	21	3	18	0	25
CRW_01572	5S_rRNA links to Rfam database...	0.20	0.19	0.22	7	6989	25	6	19	0	30
CRW_01573	5S_rRNA links to Rfam database...	0.25	0.24	0.26	9	7226	25	3	22	0	28
CRW_01578	5S_rRNA links to Rfam database...	0.00	0.00	0.00	0	7111	29	4	25	0	37
CRW_01580	5S_rRNA links to Rfam database...	0.12	0.11	0.14	4	7111	25	2	23	0	33
CRW_01581	5S_rRNA links to Rfam database...	0.26	0.24	0.29	9	7109	22	0	22	0	28
CRW_01583	5S_rRNA links to Rfam database...	0.30	0.27	0.33	10	7110	20	2	18	0	27
CRW_01584	5S_rRNA links to Rfam database...	0.35	0.32	0.38	12	7108	20	3	17	0	25
CRW_01590	5S_rRNA links to Rfam database...	-0.01	0.00	0.00	0	7103	37	8	29	0	37
CRW_01593	5S_rRNA links to Rfam database...	0.26	0.24	0.28	9	7108	23	4	19	0	28
CRW_01595	5S_rRNA links to Rfam database...	0.00	0.00	0.00	0	8476	39	2	37	0	37
CRW_01599	5S_rRNA links to Rfam database...	0.39	0.38	0.40	14	7105	23	0	21	2	23
CRW_01603	5S_rRNA links to Rfam database...	0.11	0.11	0.13	4	7108	28	2	26	0	33
CRW_01605	5S_rRNA links to Rfam database...	0.14	0.14	0.15	5	7106	30	3	26	1	32
CRW_01606	5S_rRNA links to Rfam database...	0.20	0.19	0.23	7	7109	24	0	24	0	30
CRW_01608	5S_rRNA links to Rfam database...	0.51	0.51	0.51	19	8348	19	3	15	1	18
CRW_01613	5S_rRNA links to Rfam database...	0.90	0.81	1.00	30	6991	1	0	0	1	7
CRW_01616	5S_rRNA links to Rfam database...	0.44	0.41	0.48	15	7109	16	3	13	0	22
CRW_01617	5S_rRNA links to Rfam database...	0.48	0.46	0.52	17	7107	16	4	12	0	20
CRW_01620	5S_rRNA links to Rfam database...	0.24	0.22	0.27	8	6991	22	2	20	0	29
CRW_01621	5S_rRNA links to Rfam database...	0.15	0.14	0.19	5	7113	22	2	20	0	32
CRW_01623	5S_rRNA links to Rfam database...	0.11	0.11	0.12	4	7107	30	0	29	1	33
CRW_01625	5S_rRNA links to Rfam database...	0.32	0.32	0.32	12	7103	25	3	22	0	25
NDB_00014	-	0.89	0.80	1.00	8	182	0	0	0	0	2
NDB_00015	-	0.38	0.40	0.40	4	266	6	0	6	0	6
NDB_00016	-	-0.03	0.00	0.00	0	269	7	0	7	0	12
NDB_00047	-	-0.03	0.00	0.00	0	269	7	0	7	0	12
NDB_00048	-	0.90	0.82	1.00	23	1517	0	0	0	0	5
NDB_00049	-	0.92	0.85	1.00	11	314	0	0	0	0	2
NDB_00051	tRNA links to Rfam database...	0.91	0.83	1.00	20	2755	0	0	0	0	4
PDB_00001	-	-0.02	0.00	0.00	0	272	4	0	4	0	12
PDB_00002	-	0.87	0.88	0.88	7	202	1	0	1	0	1
PDB_00003	-	0.81	0.67	1.00	8	343	0	0	0	0	4
PDB_00004	-	0.76	0.58	1.00	11	809	0	0	0	0	8
PDB_00005	Tymo_tRNA-like links to Rfam database...	0.78	0.79	0.79	11	932	3	1	2	0	3
PDB_00006	-	0.84	0.71	1.00	10	693	0	0	0	0	4
PDB_00011	-	-0.03	0.00	0.00	0	269	7	0	7	0	12
PDB_00012	mir-TAR links to Rfam database...	1.00	1.00	1.00	7	399	2	0	0	2	0
PDB_00013	-	1.00	1.00	1.00	10	396	1	0	0	1	0
PDB_00017	-	0.77	0.60	1.00	9	694	0	0	0	0	6
PDB_00018	-	0.68	0.55	0.85	11	1022	2	2	0	0	9
PDB_00019	-	1.00	1.00	1.00	8	245	0	0	0	0	0
PDB_00020	-	0.80	0.70	0.93	14	765	1	0	1	0	6
PDB_00021	-	1.00	1.00	1.00	8	182	0	0	0	0	0
PDB_00022	-	0.74	0.56	1.00	5	248	0	0	0	0	4
PDB_00032	-	0.63	0.40	1.00	6	897	0	0	0	0	9
PDB_00034	-	-0.02	0.00	0.00	0	372	6	0	6	0	12
PDB_00035	-	0.94	0.89	1.00	8	202	0	0	0	0	1
PDB_00036	-	-0.01	0.00	0.00	0	3466	26	0	20	6	27
PDB_00039	-	0.08	0.07	0.11	3	5328	26	1	24	1	42
PDB_00040	-	0.63	0.40	1.00	4	272	0	0	0	0	6
PDB_00041	-	0.96	0.92	1.00	11	619	0	0	0	0	1
PDB_00043	-	0.78	0.62	1.00	8	427	0	0	0	0	5
PDB_00048	-	0.94	0.89	1.00	8	292	1	0	0	1	1
PDB_00049	-	0.62	0.40	1.00	4	227	0	0	0	0	6
PDB_00053	-	1.00	1.00	1.00	11	424	0	0	0	0	0
PDB_00054	-	-0.04	0.00	0.00	0	185	5	0	5	0	10
PDB_00056	-	0.90	0.81	1.00	13	617	0	0	0	0	3
PDB_00057	-	0.79	0.80	0.80	8	341	3	0	2	1	2
PDB_00065	-	-0.02	0.00	0.00	0	399	7	0	7	0	10
PDB_00070	tRNA links to Rfam database...	0.41	0.38	0.45	9	2830	12	0	11	1	15
PDB_00074	-	-0.03	0.00	0.00	0	370	8	0	8	0	12
PDB_00081	-	0.94	0.89	1.00	8	182	0	0	0	0	1
PDB_00088	-	0.86	0.75	1.00	9	426	1	0	0	1	3
PDB_00096	-	0.39	0.33	0.50	4	317	4	0	4	0	8
PDB_00098	-	0.81	0.67	1.00	4	227	0	0	0	0	2
PDB_00102	-	0.93	0.88	1.00	7	224	0	0	0	0	1
PDB_00104	-	-0.02	0.00	0.00	0	616	14	0	14	0	16
PDB_00107	-	0.95	0.91	1.00	10	455	1	0	0	1	1
PDB_00108	-	1.00	1.00	1.00	7	203	0	0	0	0	0
PDB_00110	-	1.00	1.00	1.00	7	246	0	0	0	0	0
PDB_00113	-	0.74	0.56	1.00	5	226	0	0	0	0	4
PDB_00115	-	-0.03	0.00	0.00	0	547	14	0	14	0	16
PDB_00116	-	0.91	0.83	1.00	5	226	0	0	0	0	1
PDB_00119	-	0.95	0.90	1.00	9	244	0	0	0	0	1
PDB_00120	-	0.95	0.90	1.00	9	222	0	0	0	0	1
PDB_00121	-	0.95	0.90	1.00	9	222	0	0	0	0	1
PDB_00122	-	0.91	0.83	1.00	10	290	0	0	0	0	2
PDB_00123	-	0.35	0.33	0.38	12	4154	20	0	20	0	24
PDB_00124	-	0.86	0.90	0.82	9	485	2	2	0	0	1
PDB_00125	-	-0.03	0.00	0.00	0	227	4	0	4	0	10
PDB_00128	-	0.61	0.57	0.67	8	484	4	0	4	0	6
PDB_00130	-	1.00	1.00	1.00	6	270	0	0	0	0	0
PDB_00132	-	0.70	0.50	1.00	6	429	0	0	0	0	6
PDB_00134	-	0.79	0.63	1.00	5	373	0	0	0	0	3
PDB_00136	-	0.24	0.19	0.31	5	2399	11	0	11	0	21
PDB_00137	-	0.87	0.77	1.00	10	396	0	0	0	0	3
PDB_00138	-	0.79	0.63	1.00	5	373	0	0	0	0	3
PDB_00142	-	0.91	0.83	1.00	10	425	0	0	0	0	2
PDB_00149	-	0.89	0.80	1.00	12	691	0	0	0	0	3
PDB_00150	-	0.34	0.30	0.43	3	293	5	0	4	1	7
PDB_00152	-	0.93	0.88	1.00	7	183	0	0	0	0	1
PDB_00153	-	0.95	0.90	1.00	9	244	0	0	0	0	1
PDB_00155	-	0.86	0.75	1.00	6	319	0	0	0	0	2
PDB_00157	-	0.24	0.21	0.30	6	3301	17	0	14	3	23
PDB_00158	-	0.77	0.60	1.00	12	849	0	0	0	0	8
PDB_00159	-	0.67	0.45	1.00	5	346	0	0	0	0	6
PDB_00160	-	0.94	0.89	1.00	8	268	0	0	0	0	1
PDB_00168	-	0.81	0.67	1.00	4	296	1	0	0	1	2
PDB_00169	-	0.43	0.40	0.50	4	223	4	0	4	0	6
PDB_00170	-	0.93	0.88	1.00	14	616	0	0	0	0	2
PDB_00171	-	0.70	0.50	1.00	6	429	0	0	0	0	6
PDB_00174	-	0.90	0.82	1.00	18	1017	0	0	0	0	4
PDB_00175	-	0.12	0.11	0.13	4	4530	26	0	26	0	32
PDB_00178	-	0.39	0.36	0.44	4	519	5	1	4	0	7
PDB_00181	-	0.36	0.33	0.43	3	224	4	0	4	0	6
PDB_00182	-	0.66	0.44	1.00	4	249	0	0	0	0	5
PDB_00183	-	0.19	0.17	0.22	4	1467	14	0	14	0	19
PDB_00184	-	0.87	0.77	1.00	10	551	0	0	0	0	3
PDB_00185	-	0.55	0.50	0.61	14	2903	10	0	9	1	14
PDB_00190	-	0.95	0.90	1.00	9	222	0	0	0	0	1
PDB_00192	-	0.62	0.39	1.00	14	3226	0	0	0	0	22
PDB_00195	-	-0.01	0.00	0.00	0	3454	32	0	32	0	42
PDB_00196	-	0.92	0.86	1.00	24	1572	0	0	0	0	4
PDB_00197	-	1.00	1.00	1.00	7	293	0	0	0	0	0
PDB_00200	-	0.94	0.89	1.00	8	202	0	0	0	0	1
PDB_00201	-	0.77	0.60	1.00	6	319	0	0	0	0	4
PDB_00202	-	0.96	0.93	1.00	13	548	1	0	0	1	1
PDB_00203	-	0.96	0.92	1.00	12	549	0	0	0	0	1
PDB_00205	-	0.84	0.71	1.00	10	425	0	0	0	0	4
PDB_00206	-	1.00	1.00	1.00	8	268	0	0	0	0	0
PDB_00207	-	0.88	0.79	1.00	11	367	0	0	0	0	3
PDB_00209	-	0.96	1.00	0.92	11	549	1	1	0	0	0
PDB_00211	-	0.89	0.80	1.00	8	182	0	0	0	0	2
PDB_00213	Gammaretro_CES links to Rfam database...	0.40	0.37	0.45	15	5017	18	0	18	0	26
PDB_00214	-	0.73	0.55	1.00	6	400	0	0	0	0	5
PDB_00215	-	0.89	0.79	1.00	19	1109	0	0	0	0	5
PDB_00219	-	1.00	1.00	1.00	7	203	0	0	0	0	0
PDB_00221	-	0.62	0.56	0.71	5	246	2	0	2	0	4
PDB_00224	-	0.93	0.88	1.00	7	183	0	0	0	0	1
PDB_00229	tRNA links to Rfam database...	0.96	0.91	1.00	21	2754	0	0	0	0	2
PDB_00234	-	-0.03	0.00	0.00	0	269	7	0	7	0	12
PDB_00236	-	-0.02	0.00	0.00	0	1111	17	0	17	0	24
PDB_00237	-	0.66	0.44	1.00	4	374	1	0	0	1	5
PDB_00239	-	0.29	0.22	0.40	4	810	6	0	6	0	14
PDB_00243	-	0.96	0.92	1.00	11	619	0	0	0	0	1
PDB_00248	-	0.86	0.75	1.00	9	267	0	0	0	0	3
PDB_00249	-	0.22	0.18	0.33	2	270	4	0	4	0	9
PDB_00250	-	0.37	0.32	0.44	8	1752	10	2	8	0	17
PDB_00252	-	0.93	0.87	1.00	13	767	1	0	0	1	2
PDB_00254	-	-0.04	0.00	0.00	0	267	9	0	9	0	12
PDB_00256	-	0.49	0.75	0.33	3	316	7	6	0	1	1
PDB_00257	-	0.79	0.64	1.00	7	344	0	0	0	0	4
PDB_00258	-	1.00	1.00	1.00	8	245	0	0	0	0	0
PDB_00261	-	-0.02	0.00	0.00	0	487	9	0	9	0	16
PDB_00262	-	-0.02	0.00	0.00	0	1109	19	0	19	0	24
PDB_00264	-	0.25	0.22	0.31	4	1115	9	0	9	0	14
PDB_00267	-	-0.03	0.00	0.00	0	367	11	0	11	0	14
PDB_00286	-	-0.03	0.00	0.00	0	184	6	0	6	0	6
PDB_00293	-	-0.01	0.00	0.00	0	1112	16	8	8	0	12
PDB_00307	-	0.61	0.60	0.63	27	11132	16	4	12	0	18
PDB_00312	-	1.00	1.00	1.00	9	426	0	0	0	0	0
PDB_00313	tRNA links to Rfam database...	0.75	0.79	0.71	15	2680	8	4	2	2	4
PDB_00317	-	1.00	1.00	1.00	10	368	0	0	0	0	0
PDB_00326	-	0.56	0.46	0.68	13	3722	6	0	6	0	15
PDB_00327	tRNA links to Rfam database...	0.69	0.70	0.70	16	3058	7	0	7	0	7
PDB_00339	-	0.75	0.56	1.00	9	657	0	0	0	0	7
PDB_00341	-	0.55	0.44	0.70	7	693	3	0	3	0	9
PDB_00342	-	-0.02	0.00	0.00	0	762	18	0	18	0	10
PDB_00343	-	0.74	0.67	0.82	14	1579	4	0	3	1	7
PDB_00347	-	0.67	0.45	1.00	9	1167	0	0	0	0	11
PDB_00349	-	0.35	0.29	0.44	4	937	5	0	5	0	10
PDB_00351	-	-0.01	0.00	0.00	0	557	4	0	4	0	12
PDB_00352	-	0.72	0.68	0.76	13	1208	4	3	1	0	6
PDB_00357	-	0.84	0.70	1.00	7	773	0	0	0	0	3
PDB_00358	-	0.45	0.45	0.46	21	10539	25	5	20	0	26
PDB_00362	tRNA links to Rfam database...	0.85	0.91	0.80	20	2825	5	5	0	0	2
PDB_00365	-	0.96	0.93	1.00	13	422	0	0	0	0	1
PDB_00370	-	0.10	0.12	0.08	3	15187	35	16	19	0	22
PDB_00371	-	0.81	0.67	1.00	10	551	0	0	0	0	5
PDB_00377	-	0.91	0.83	1.00	10	518	0	0	0	0	2
PDB_00378	-	0.88	0.79	1.00	11	692	0	0	0	0	3
PDB_00392	tRNA links to Rfam database...	0.51	0.57	0.46	12	2824	14	5	9	0	9
PDB_00400	-	-0.01	0.00	0.00	0	3142	18	1	17	0	34
PDB_00402	tRNA links to Rfam database...	0.66	0.65	0.68	15	2753	7	0	7	0	8
PDB_00411	-	0.54	0.47	0.64	7	584	4	0	4	0	8
PDB_00417	-	0.12	0.11	0.14	6	14152	39	1	37	1	50
PDB_00420	-	0.54	0.30	1.00	3	493	3	0	0	3	7
PDB_00421	-	0.66	0.65	0.67	28	11434	14	0	14	0	15
PDB_00425	tRNA links to Rfam database...	0.65	0.64	0.67	14	2680	7	6	1	0	8
PDB_00430	tRNA links to Rfam database...	0.73	0.76	0.70	19	3213	8	3	5	0	6
PDB_00431	tRNA links to Rfam database...	0.97	0.95	1.00	19	2192	0	0	0	0	1
PDB_00433	-	0.12	0.12	0.14	4	6641	25	3	22	0	30
PDB_00447	-	0.95	0.91	1.00	40	7100	0	0	0	0	4
PDB_00454	-	0.26	0.25	0.30	8	2674	19	0	19	0	24
PDB_00474	tRNA links to Rfam database...	0.96	0.91	1.00	21	2680	0	0	0	0	2
PDB_00475	-	0.36	0.38	0.34	12	10843	31	3	20	8	20
PDB_00481	-	-0.01	0.00	0.00	0	1875	16	0	16	0	26
PDB_00513	-	1.00	1.00	1.00	7	224	0	0	0	0	0
PDB_00522	-	0.45	0.44	0.47	8	1111	9	0	9	0	10
PDB_00526	-	-0.01	0.00	0.00	0	294	6	1	5	0	3
PDB_00527	-	-0.02	0.00	0.00	0	294	6	1	5	0	5
PDB_00537	-	0.94	0.89	1.00	8	398	0	0	0	0	1
PDB_00553	mir-TAR links to Rfam database...	0.95	0.91	1.00	10	455	0	0	0	0	1
PDB_00565	-	0.14	0.12	0.18	6	8094	28	1	27	0	44
PDB_00569	-	0.55	0.51	0.61	23	11438	15	0	15	0	22
PDB_00570	-	0.22	0.18	0.29	4	2264	10	1	9	0	18
PDB_00571	tRNA links to Rfam database...	0.87	0.80	0.95	20	3300	1	1	0	0	5
PDB_00573	-	0.73	0.68	0.79	23	6641	8	0	6	2	11
PDB_00584	-	0.24	0.24	0.27	4	1470	11	0	11	0	13
PDB_00593	-	0.43	0.43	0.43	20	11430	26	5	21	0	26
PDB_00599	-	0.61	0.57	0.67	8	549	4	0	4	0	6
PDB_00603	-	0.95	0.90	1.00	9	244	0	0	0	0	1
PDB_00611	-	-0.01	0.00	0.00	0	772	8	2	6	0	11
PDB_00617	-	0.95	0.90	1.00	9	267	0	0	0	0	1
PDB_00627	-	0.75	0.71	0.80	12	1638	4	0	3	1	5
PDB_00629	-	0.21	0.17	0.29	4	1639	10	1	9	0	19
PDB_00637	-	0.90	0.86	0.95	18	2327	3	0	1	2	3
PDB_00648	-	0.96	0.92	1.00	12	849	0	0	0	0	1
PDB_00663	-	-0.01	0.00	0.00	0	932	17	0	14	3	10
PDB_00667	tRNA links to Rfam database...	0.71	0.68	0.75	15	2830	6	4	1	1	7
PDB_00679	-	0.00	0.00	0.00	0	17530	48	4	44	0	56
PDB_00681	-	-0.01	0.00	0.00	0	1256	19	2	17	0	19
PDB_00682	-	-0.03	0.00	0.00	0	484	12	0	12	0	16
PDB_00686	-	0.92	0.84	1.00	16	687	0	0	0	0	3
PDB_00687	-	0.35	0.33	0.40	4	620	6	0	6	0	8
PDB_00692	-	0.59	0.35	1.00	7	1218	0	0	0	0	13
PDB_00693	-	0.94	0.88	1.00	15	1161	0	0	0	0	2
PDB_00698	-	-0.02	0.00	0.00	0	847	14	0	14	0	19
PDB_00702	-	0.34	0.33	0.36	12	4338	23	0	21	2	24
PDB_00705	-	-0.03	0.00	0.00	0	246	7	0	7	0	8
PDB_00709	-	0.20	0.19	0.25	3	768	9	0	9	0	13
PDB_00710	-	-0.02	0.00	0.00	0	770	10	0	10	0	16
PDB_00713	-	0.69	0.62	0.76	13	1999	4	0	4	0	8
PDB_00716	HDV_ribozyme links to Rfam database...	0.17	0.17	0.18	4	2679	19	0	18	1	19
PDB_00724	-	0.83	0.69	1.00	20	2125	0	0	0	0	9
PDB_00725	-	0.85	0.73	1.00	11	584	0	0	0	0	4
PDB_00726	-	0.66	0.44	1.00	4	347	1	0	0	1	5
PDB_00727	-	1.00	1.00	1.00	7	554	3	0	0	3	0
PDB_00728	-	0.97	0.93	1.00	14	482	0	0	0	0	1
PDB_00732	-	0.31	0.30	0.33	9	2976	19	0	18	1	21
PDB_00733	-	0.21	0.20	0.23	6	2900	21	1	19	1	24
PDB_00734	-	0.62	0.40	1.00	4	227	0	0	0	0	6
PDB_00737	-	0.95	0.91	1.00	10	341	0	0	0	0	1
PDB_00740	-	0.51	0.27	1.00	3	228	0	0	0	0	8
PDB_00741	Entero_5_CRE links to Rfam database...	0.84	0.71	1.00	12	691	0	0	0	0	5
PDB_00746	-	0.45	0.42	0.48	16	4720	18	0	17	1	22
PDB_00750	-	0.46	0.41	0.53	20	11897	18	0	18	0	29
PDB_00751	-	0.73	0.54	1.00	7	588	2	0	0	2	6
PDB_00752	-	-0.01	0.00	0.00	0	7337	44	2	42	0	44
PDB_00754	-	0.30	0.33	0.29	4	1471	11	4	6	1	8
PDB_00767	-	1.00	1.00	1.00	20	2191	4	0	0	4	0
PDB_00800	-	0.46	0.41	0.52	12	2057	11	0	11	0	17
PDB_00804	-	0.19	0.20	0.18	10	15344	48	6	40	2	40
PDB_00806	-	-0.01	0.00	0.00	0	1816	14	0	14	0	25
PDB_00807	-	0.59	0.35	1.00	8	1883	0	0	0	0	15
PDB_00809	-	-0.02	0.00	0.00	0	488	8	0	8	0	14
PDB_00810	s2m links to Rfam database...	0.45	0.35	0.60	6	1071	4	2	2	0	11
PDB_00815	-	0.74	0.56	1.00	5	625	0	0	0	0	4
PDB_00823	-	-0.03	0.00	0.00	0	186	4	0	4	0	9
PDB_00828	Purine links to Rfam database...	0.86	0.74	1.00	20	2465	0	0	0	0	7
PDB_00829	Purine links to Rfam database...	0.83	0.79	0.86	19	2256	3	2	1	0	5
PDB_00842	-	0.79	0.63	1.00	5	373	0	0	0	0	3
PDB_00851	-	0.54	0.44	0.67	18	4726	9	0	9	0	23
PDB_00855	-	1.00	1.00	1.00	10	455	1	0	0	1	0
PDB_00857	-	1.00	1.00	1.00	15	1066	0	0	0	0	0
PDB_00863	-	0.54	0.44	0.67	8	978	4	0	4	0	10
PDB_00864	-	0.45	0.35	0.59	22	13004	15	1	14	0	41
PDB_00865	-	0.96	0.92	1.00	11	340	0	0	0	0	1
PDB_00868	-	0.81	0.79	0.85	11	1313	3	0	2	1	3
PDB_00870	-	-0.01	0.00	0.00	0	1119	14	0	9	5	16
PDB_00871	-	-0.02	0.00	0.00	0	1109	19	0	19	0	24
PDB_00873	-	0.39	0.35	0.45	17	4522	21	0	21	0	31
PDB_00874	-	-0.02	0.00	0.00	0	932	14	0	14	0	20
PDB_00876	HIV_FE links to Rfam database...	0.95	0.90	1.00	18	972	0	0	0	0	2
PDB_00878	-	0.44	0.42	0.50	5	486	5	0	5	0	7
PDB_00879	-	0.09	0.08	0.12	3	5024	23	1	22	0	36
PDB_00883	-	1.00	1.00	1.00	12	618	0	0	0	0	0
PDB_00885	-	0.94	0.89	1.00	16	804	0	0	0	0	2
PDB_00886	-	0.64	0.60	0.69	24	4151	11	0	11	0	16
PDB_00890	-	0.96	0.93	1.00	13	690	0	0	0	0	1
PDB_00891	-	0.97	0.93	1.00	14	932	0	0	0	0	1
PDB_00892	-	-0.01	0.00	0.00	0	2541	18	2	13	3	15
PDB_00897	-	0.00	0.00	0.00	0	11428	48	4	44	0	61
PDB_00906	-	-0.01	0.00	0.00	0	6630	40	0	40	0	48
PDB_00918	-	0.75	0.57	1.00	4	321	0	0	0	0	3
PDB_00923	-	1.00	1.00	1.00	6	184	0	0	0	0	0
PDB_00924	-	0.96	0.92	1.00	33	3622	0	0	0	0	3
PDB_00925	-	0.95	0.91	1.00	10	341	0	0	0	0	1
PDB_00928	-	0.79	0.63	1.00	5	295	0	0	0	0	3
PDB_00929	-	0.86	0.75	1.00	15	765	0	0	0	0	5
PDB_00932	-	0.47	0.46	0.50	6	808	6	1	5	0	7
PDB_00937	-	0.94	0.89	1.00	16	614	0	0	0	0	2
PDB_00939	-	0.94	0.89	1.00	40	10256	2	0	0	2	5
PDB_00943	-	0.21	0.20	0.23	3	1418	12	2	8	2	12
PDB_00945	-	0.47	0.40	0.57	4	458	3	0	3	0	6
PDB_00960	-	-0.03	0.00	0.00	0	394	12	2	10	0	10
PDB_00961	-	0.84	0.80	0.89	8	1761	6	0	1	5	2
PDB_00964	-	0.94	0.89	1.00	8	622	4	0	0	4	1
PDB_00966	-	0.84	0.71	1.00	5	248	1	0	0	1	2
PDB_00967	-	0.46	0.42	0.51	20	12051	19	0	19	0	28
PDB_00973	-	0.52	0.50	0.57	4	344	3	0	3	0	4
PDB_00974	-	-0.01	0.00	0.00	0	375	3	0	3	0	9
PDB_00979	-	0.10	0.10	0.11	5	11735	41	7	34	0	43
PDB_00980	-	0.60	0.63	0.57	26	11129	22	6	14	2	15
PDB_00986	-	0.84	0.71	1.00	10	425	0	0	0	0	4
PDB_00987	-	0.79	0.63	1.00	10	551	0	0	0	0	6
PDB_00989	-	0.46	0.42	0.52	15	2974	14	0	14	0	21
PDB_00994	-	0.73	0.79	0.67	33	10536	19	9	7	3	9
PDB_01000	-	0.81	0.80	0.83	24	10849	20	5	0	15	6
PDB_01001	tRNA links to Rfam database...	-0.01	0.00	0.00	0	2130	15	3	12	0	18
PDB_01002	tRNA links to Rfam database...	0.95	0.90	1.00	19	2756	2	0	0	2	2
PDB_01008	-	1.00	1.00	1.00	12	583	0	0	0	0	0
PDB_01009	tRNA links to Rfam database...	0.90	0.90	0.90	19	2464	3	0	2	1	2
PDB_01017	-	-0.03	0.00	0.00	0	423	12	0	12	0	14
PDB_01019	-	-0.03	0.00	0.00	0	423	12	0	12	0	14
PDB_01020	Purine links to Rfam database...	0.82	0.78	0.86	18	2257	4	2	1	1	5
PDB_01025	-	1.00	1.00	1.00	9	244	0	0	0	0	0
PDB_01035	-	0.94	0.88	1.00	23	1517	0	0	0	0	3
PDB_01040	-	0.30	0.30	0.33	6	1110	12	0	12	0	14
PDB_01044	-	1.00	1.00	1.00	16	930	3	0	0	3	0
PDB_01045	-	0.98	0.96	1.00	22	1203	0	0	0	0	1
PDB_01050	UnaL2 links to Rfam database...	0.92	0.85	1.00	11	619	2	0	0	2	2
PDB_01051	Telomerase-cil links to Rfam database...	0.36	0.38	0.36	5	889	9	2	7	0	8
PDB_01053	tRNA links to Rfam database...	0.97	0.94	1.00	15	1363	0	0	0	0	1
PDB_01054	-	0.96	0.93	1.00	40	11741	0	0	0	0	3
PDB_01056	-	0.94	0.89	1.00	8	245	0	0	0	0	1
PDB_01057	-	1.00	1.00	1.00	8	202	0	0	0	0	0
PDB_01059	-	0.75	0.57	1.00	4	227	0	0	0	0	3
PDB_01060	-	-0.01	0.00	0.00	0	1990	26	2	24	0	21
PDB_01061	-	-0.01	0.00	0.00	0	3132	28	0	28	0	40
PDB_01062	-	0.37	0.31	0.45	5	935	6	0	6	0	11
PDB_01065	-	0.62	0.40	1.00	4	227	0	0	0	0	6
PDB_01070	-	0.43	0.37	0.50	20	12680	20	0	20	0	34
PDB_01071	-	0.42	0.38	0.50	5	396	5	0	5	0	8
PDB_01073	SAM links to Rfam database...	0.56	0.47	0.67	16	4347	9	1	7	1	18
PDB_01074	-	0.34	0.32	0.38	8	2754	15	0	13	2	17
PDB_01075	-	-0.01	0.00	0.00	0	2397	18	0	18	0	32
PDB_01077	-	0.39	0.32	0.50	6	1941	7	0	6	1	13
PDB_01084	-	1.00	1.00	1.00	7	224	0	0	0	0	0
PDB_01092	glmS links to Rfam database...	0.73	0.69	0.77	36	10106	12	2	9	1	16
PDB_01097	-	0.93	0.88	1.00	7	203	0	0	0	0	1
PDB_01099	-	0.67	0.45	1.00	5	271	0	0	0	0	6
PDB_01100	-	-0.01	0.00	0.00	0	1470	15	0	15	0	22
PDB_01108	-	1.00	1.00	1.00	9	222	0	0	0	0	0
PDB_01114	TPP links to Rfam database...	0.42	0.33	0.53	9	2833	8	0	8	0	18
PDB_01117	-	-0.02	0.00	0.00	0	771	9	0	9	0	17
PDB_01118	-	0.92	0.84	1.00	16	1580	1	0	0	1	3
PDB_01119	-	0.66	0.64	0.69	9	617	4	2	2	0	5
PDB_01126	-	0.49	0.50	0.48	14	3052	17	2	13	2	14
PDB_01127	-	0.89	0.79	1.00	11	979	2	0	0	2	3
PDB_01128	-	0.94	0.89	1.00	24	2751	0	0	0	0	3
PDB_01130	-	-0.01	0.00	0.00	0	1752	18	5	13	0	20
PDB_01133	-	1.00	1.00	1.00	10	341	0	0	0	0	0
PDB_01135	-	-0.02	0.00	0.00	0	397	9	2	7	0	9
PDB_01137	-	-0.02	0.00	0.00	0	321	4	2	2	0	8
PDB_01138	-	-0.02	0.00	0.00	0	318	7	0	7	0	7
PDB_01145	-	0.96	0.93	1.00	13	767	2	0	0	2	1
PDB_01150	-	0.80	0.75	0.86	6	224	2	0	1	1	2
PDB_01152	HIV_FS2 links to Rfam database...	0.88	0.79	1.00	11	550	0	0	0	0	3
PDB_01154	-	0.90	0.82	1.00	9	397	0	0	0	0	2
PDB_01156	-	0.17	0.14	0.23	5	3806	18	0	17	1	30
PDB_01160	-	0.43	0.40	0.47	8	2063	9	3	6	0	12
PDB_01162	-	0.55	0.56	0.56	5	1531	7	0	4	3	4
PDB_01163	-	0.98	0.95	1.00	21	1014	0	0	0	0	1
PDB_01164	-	0.94	0.88	1.00	23	1517	0	0	0	0	3
PDB_01167	-	0.70	0.50	1.00	4	186	0	0	0	0	4
PDB_01168	-	-0.03	0.00	0.00	0	186	4	0	4	0	8
PDB_01178	-	0.80	0.64	1.00	9	519	0	0	0	0	5
PDB_01187	-	0.58	0.52	0.66	27	9970	15	1	13	1	25
PDB_01194	-	0.73	0.60	0.90	9	486	1	1	0	0	6
PDB_01199	-	-0.01	0.00	0.00	0	2129	16	1	15	0	24
PDB_01201	-	0.79	0.64	1.00	14	1114	0	0	0	0	8
PDB_01203	-	0.73	0.63	0.86	12	1162	2	2	0	0	7
PDB_01205	-	0.97	0.94	1.00	17	1018	0	0	0	0	1
PDB_01208	-	-0.01	0.00	0.00	0	1167	9	0	9	0	20
PDB_01209	-	-0.01	0.00	0.00	0	1163	13	0	13	0	20
PDB_01212	-	-0.01	0.00	0.00	0	1166	10	0	10	0	20
PDB_01213	-	-0.01	0.00	0.00	0	1070	11	0	11	0	18
PDB_01216	-	-0.01	0.00	0.00	0	1164	12	0	12	0	20
PDB_01219	-	0.26	0.20	0.36	4	935	7	0	7	0	16
PDB_01236	ykoK links to Rfam database...	0.50	0.43	0.59	23	11589	17	0	16	1	31
PDB_01237	-	1.00	1.00	1.00	8	268	0	0	0	0	0
PDB_01249	-	0.75	0.72	0.78	39	11125	11	0	11	0	15
PDB_01250	-	0.16	0.15	0.18	6	12056	30	3	25	2	35
PDB_01251	-	-0.03	0.00	0.00	0	318	7	0	7	0	13
PDB_01255	-	0.36	0.30	0.44	17	12522	23	1	21	1	39
PDB_01260	-	0.41	0.36	0.47	9	1811	10	0	10	0	16
PDB_01262	-	-0.03	0.00	0.00	0	186	4	0	4	0	8
PDB_01275	-	0.26	0.23	0.30	16	18282	39	0	38	1	55
PDB_01281	-	-0.03	0.00	0.00	0	366	12	0	12	0	14
PDB_01299	-	0.90	0.87	0.93	13	889	1	1	0	0	2
PDB_01309	-	-0.01	0.00	0.00	0	9125	55	12	43	0	39
PDB_01313	-	-0.03	0.00	0.00	0	270	6	4	2	0	8
PDB_01325	-	-0.03	0.00	0.00	0	269	7	0	7	0	12
PDB_01332	-	0.81	0.67	1.00	6	345	0	0	0	0	3
PDB_01337	-	-0.01	0.00	0.00	0	557	4	2	2	0	11
PDB_01338	-	-0.02	0.00	0.00	0	272	4	1	3	0	8
PDB_01340	-	0.79	0.63	1.00	5	295	0	0	0	0	3
RFA_00389	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	2	0	0	2	1
RFA_00390	Hammerhead_3 links to Rfam database...	0.93	0.87	1.00	13	1418	2	0	0	2	2
RFA_00391	Hammerhead_3 links to Rfam database...	0.69	0.67	0.71	10	1417	6	3	1	2	5
RFA_00396	Hammerhead_3 links to Rfam database...	0.89	0.80	1.00	12	1419	1	0	0	1	3
RFA_00402	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	0	0	0	0	1
RFA_00409	Hammerhead_3 links to Rfam database...	0.89	0.80	1.00	12	1419	1	0	0	1	3
RFA_00416	Hammerhead_3 links to Rfam database...	0.93	0.93	0.93	14	1470	4	0	1	3	1
RFA_00420	-	1.00	1.00	1.00	15	3306	11	0	0	11	0
RFA_00425	Hammerhead_3 links to Rfam database...	0.93	0.87	1.00	13	1640	4	0	0	4	2
RFA_00427	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1471	2	0	0	2	1
RFA_00429	-	1.00	1.00	1.00	9	771	2	0	0	2	0
RFA_00433	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	2	0	0	2	1
RFA_00434	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	2	0	0	2	1
RFA_00436	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	2	0	0	2	1
RFA_00440	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1471	2	0	0	2	1
RFA_00442	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	2	0	0	2	1
RFA_00444	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1525	1	0	0	1	0
RFA_00446	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1471	2	0	0	2	1
RFA_00449	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1471	2	0	0	2	1
RFA_00582	Y_RNA links to Rfam database...	0.00	0.00	0.00	0	5980	28	4	11	13	15
RFA_00583	Y_RNA links to Rfam database...	0.51	0.53	0.50	8	4934	18	4	4	10	7
RFA_00584	Y_RNA links to Rfam database...	0.00	0.00	0.00	0	2917	19	0	9	10	15
RFA_00585	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4836	10	0	0	10	0
RFA_00586	Y_RNA links to Rfam database...	0.00	0.00	0.00	0	3906	15	4	6	5	15
RFA_00587	Y_RNA links to Rfam database...	0.49	0.53	0.44	8	4833	21	4	6	11	7
RFA_00588	Y_RNA links to Rfam database...	0.41	0.47	0.37	7	4541	19	7	5	7	8
RFA_00589	Y_RNA links to Rfam database...	0.31	0.27	0.36	4	4360	19	0	7	12	11
RFA_00590	-	0.00	0.00	0.00	0	5345	19	0	11	8	15
RFA_00594	Y_RNA links to Rfam database...	0.37	0.33	0.42	5	2763	12	0	7	5	10
RFA_00596	Y_RNA links to Rfam database...	0.00	0.00	0.00	0	5978	26	5	12	9	15
RFA_00603	Telomerase-cil links to Rfam database...	0.39	0.37	0.41	13	13498	26	5	14	7	22
RFA_00604	Telomerase-cil links to Rfam database...	0.48	0.49	0.49	17	13495	24	8	10	6	18
RFA_00605	Telomerase-cil links to Rfam database...	0.09	0.09	0.09	3	15192	40	2	28	10	32
RFA_00607	Telomerase-cil links to Rfam database...	0.45	0.47	0.43	17	17726	30	8	15	7	19
RFA_00609	Telomerase-cil links to Rfam database...	0.54	0.57	0.53	21	17915	28	4	15	9	16
RFA_00610	Telomerase-cil links to Rfam database...	0.64	0.65	0.63	24	17167	23	2	12	9	13
RFA_00611	Telomerase-cil links to Rfam database...	0.57	0.54	0.59	19	13009	16	1	12	3	16
RFA_00613	Telomerase-cil links to Rfam database...	0.39	0.37	0.41	13	12848	22	6	13	3	22
RFA_00615	Telomerase-cil links to Rfam database...	0.50	0.49	0.52	17	13333	19	4	12	3	18
RFA_00632	HDV_ribozyme links to Rfam database...	-0.01	0.00	0.00	0	4073	22	0	22	0	28
RFA_00636	HDV_ribozyme links to Rfam database...	0.58	0.57	0.59	16	3978	11	1	10	0	12
RFA_00642	Vimentin3 links to Rfam database...	-0.01	0.00	0.00	0	2914	12	1	11	0	18
RFA_00643	Vimentin3 links to Rfam database...	0.38	0.39	0.39	7	2193	11	5	6	0	11
RFA_00644	Vimentin3 links to Rfam database...	0.22	0.22	0.22	4	2683	14	1	13	0	14
RFA_00645	Vimentin3 links to Rfam database...	-0.01	0.00	0.00	0	2400	15	0	15	0	18
RFA_00649	Vimentin3 links to Rfam database...	-0.01	0.00	0.00	0	2130	15	1	14	0	18
RFA_00651	Vimentin3 links to Rfam database...	0.47	0.44	0.50	8	2064	8	1	7	0	10
RFA_00653	Vimentin3 links to Rfam database...	-0.01	0.00	0.00	0	2131	14	3	11	0	18
RFA_00654	Vimentin3 links to Rfam database...	0.54	0.44	0.67	8	2403	5	1	3	1	10
RFA_00658	Hammerhead_1 links to Rfam database...	0.40	0.29	0.57	4	1121	5	0	3	2	10
RFA_00659	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	1125	5	0	3	2	14
RFA_00664	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	980	11	0	10	1	14
RFA_00667	Hammerhead_1 links to Rfam database...	0.21	0.21	0.23	3	977	10	3	7	0	11
RFA_00668	Hammerhead_1 links to Rfam database...	0.40	0.36	0.45	5	979	6	0	6	0	9
RFA_00672	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	903	0	0	0	0	13
RFA_00673	Hammerhead_1 links to Rfam database...	0.40	0.29	0.57	4	1121	4	0	3	1	10
RFA_00674	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	1117	11	0	11	0	14
RFA_00675	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	981	9	1	8	0	14
RFA_00677	Hammerhead_1 links to Rfam database...	0.64	0.57	0.73	8	979	5	0	3	2	6
RFA_00678	Hammerhead_1 links to Rfam database...	0.32	0.21	0.50	3	940	3	0	3	0	11
RFA_00680	Hammerhead_1 links to Rfam database...	0.69	0.64	0.75	9	1116	6	0	3	3	5
RFA_00683	-	0.33	0.29	0.40	4	1025	6	0	6	0	10
RFA_00684	Hammerhead_1 links to Rfam database...	0.75	0.57	1.00	8	982	1	0	0	1	6
RFA_00685	Hammerhead_1 links to Rfam database...	0.35	0.29	0.44	4	981	6	0	5	1	10
RFA_00695	Hammerhead_1 links to Rfam database...	0.22	0.21	0.23	3	7008	22	4	6	12	11
RFA_00703	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	4271	20	0	7	13	14
RFA_00704	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	983	8	0	7	1	14
RFA_00705	Hammerhead_1 links to Rfam database...	0.69	0.64	0.75	9	1023	4	0	3	1	5
RFA_00706	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	1022	13	2	11	0	14
RFA_00707	Hammerhead_1 links to Rfam database...	0.33	0.29	0.40	4	1025	7	0	6	1	10
RFA_00708	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	1027	8	0	8	0	14
RFA_00709	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	980	11	0	10	1	14
RFA_00710	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	980	10	0	10	0	14
RFA_00711	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	1026	9	0	9	0	14
RFA_00715	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	937	9	0	9	0	14
RFA_00716	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	936	10	0	10	0	14
RFA_00717	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	894	9	0	9	0	14
RFA_00720	-	0.69	0.64	0.75	9	1164	3	0	3	0	5
RFA_00721	-	0.37	0.29	0.50	4	1168	4	0	4	0	10
RFA_00730	s2m links to Rfam database...	0.64	0.42	1.00	5	898	1	0	0	1	7
RFA_00731	s2m links to Rfam database...	-0.01	0.00	0.00	0	896	7	1	6	0	12
RFA_00733	s2m links to Rfam database...	0.64	0.42	1.00	5	898	1	0	0	1	7
RFA_00734	s2m links to Rfam database...	0.16	0.17	0.18	2	892	10	2	7	1	10
RFA_00736	s2m links to Rfam database...	-0.01	0.00	0.00	0	896	7	1	6	0	12
RFA_00737	s2m links to Rfam database...	0.64	0.42	1.00	5	898	1	0	0	1	7
RFA_00745	s2m links to Rfam database...	-0.01	0.00	0.00	0	941	5	1	4	0	12
RFA_00749	s2m links to Rfam database...	0.51	0.42	0.63	5	895	4	1	2	1	7
RFA_00758	s2m links to Rfam database...	-0.01	0.00	0.00	0	898	5	0	5	0	12
RFA_00762	s2m links to Rfam database...	0.39	0.42	0.38	5	890	8	2	6	0	7
RFA_00763	s2m links to Rfam database...	0.64	0.42	1.00	5	898	0	0	0	0	7
RFA_00764	s2m links to Rfam database...	0.64	0.42	1.00	5	898	1	0	0	1	7
RFA_00765	s2m links to Rfam database...	0.64	0.42	1.00	5	898	1	0	0	1	7
RFA_00767	Corona_pk3 links to Rfam database...	0.21	0.22	0.22	4	1873	14	2	12	0	14
RFA_00768	Corona_pk3 links to Rfam database...	-0.01	0.00	0.00	0	1875	16	1	15	0	18
RFA_00769	Corona_pk3 links to Rfam database...	0.50	0.50	0.50	9	1935	9	4	5	0	9
RFA_00770	Corona_pk3 links to Rfam database...	0.65	0.56	0.77	10	2003	3	3	0	0	8
RFA_00773	Corona_pk3 links to Rfam database...	-0.01	0.00	0.00	0	1936	19	1	16	2	18
RFA_00779	Corona_pk3 links to Rfam database...	0.69	0.61	0.79	11	1939	3	3	0	0	7
RFA_00781	Gammaretro_CES links to Rfam database...	0.55	0.53	0.57	17	5020	13	1	12	0	15
RFA_00786	Gammaretro_CES links to Rfam database...	-0.01	0.00	0.00	0	5015	35	5	30	0	32
RFA_00791	Gammaretro_CES links to Rfam database...	0.38	0.34	0.42	11	5125	15	3	12	0	21
RFA_00792	Gammaretro_CES links to Rfam database...	0.57	0.53	0.61	17	5022	11	0	11	0	15
RFA_00801	Gammaretro_CES links to Rfam database...	0.52	0.50	0.55	16	5021	14	3	10	1	16
RFA_00808	RydC links to Rfam database...	1.00	1.00	1.00	16	2000	0	0	0	0	0
RFA_00809	RydC links to Rfam database...	0.45	0.44	0.47	7	2130	8	1	7	0	9
SPR_00007	tRNA links to Rfam database...	0.89	0.95	0.83	20	2826	4	4	0	0	1
SPR_00009	tRNA links to Rfam database...	0.97	0.95	1.00	19	2831	0	0	0	0	1
SPR_00010	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00012	tRNA links to Rfam database...	0.66	0.70	0.64	14	2828	8	0	8	0	6
SPR_00013	tRNA links to Rfam database...	0.84	0.90	0.78	18	2827	5	5	0	0	2
SPR_00016	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00017	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00020	tRNA links to Rfam database...	0.76	0.80	0.73	16	2679	7	4	2	1	4
SPR_00022	tRNA links to Rfam database...	0.56	0.57	0.55	12	2904	10	3	7	0	9
SPR_00023	tRNA links to Rfam database...	0.71	0.81	0.63	17	2823	10	5	5	0	4
SPR_00025	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	1	0	0	1	0
SPR_00026	tRNA links to Rfam database...	0.73	0.76	0.70	16	2903	7	0	7	0	5
SPR_00027	tRNA links to Rfam database...	0.95	0.95	0.95	20	2905	2	0	1	1	1
SPR_00029	tRNA links to Rfam database...	0.79	0.75	0.83	15	2610	6	2	1	3	5
SPR_00030	-	0.70	0.67	0.74	14	2466	5	0	5	0	7
SPR_00032	tRNA links to Rfam database...	0.98	0.95	1.00	20	2536	1	0	0	1	1
SPR_00033	tRNA links to Rfam database...	0.98	0.95	1.00	20	2608	0	0	0	0	1
SPR_00034	-	0.98	0.95	1.00	20	2465	1	0	0	1	1
SPR_00036	tRNA links to Rfam database...	0.52	0.50	0.56	10	2757	9	4	4	1	10
SPR_00044	tRNA links to Rfam database...	0.73	0.80	0.67	16	2826	8	5	3	0	4
SPR_00045	tRNA links to Rfam database...	0.93	0.91	0.95	20	2829	1	0	1	0	2
SPR_00060	tRNA links to Rfam database...	0.81	0.81	0.81	17	2754	4	1	3	0	4
SPR_00064	tRNA links to Rfam database...	0.84	0.86	0.82	18	2828	4	4	0	0	3
SPR_00065	tRNA links to Rfam database...	0.88	0.90	0.86	19	2828	3	3	0	0	2
SPR_00066	tRNA links to Rfam database...	0.87	0.95	0.80	20	2825	5	5	0	0	1
SPR_00068	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00070	tRNA links to Rfam database...	0.81	0.90	0.73	19	2824	7	7	0	0	2
SPR_00074	tRNA links to Rfam database...	0.47	0.45	0.50	9	2832	9	1	8	0	11
SPR_00078	-	0.56	0.60	0.53	9	1874	9	3	5	1	6
SPR_00079	tRNA links to Rfam database...	0.65	0.58	0.73	11	2470	5	0	4	1	8
SPR_00080	tRNA links to Rfam database...	0.74	0.68	0.81	13	2399	3	0	3	0	6
SPR_00086	tRNA links to Rfam database...	0.70	0.76	0.64	16	2825	9	7	2	0	5
SPR_00087	tRNA links to Rfam database...	0.95	0.90	1.00	18	2832	0	0	0	0	2
SPR_00088	tRNA links to Rfam database...	0.95	0.90	1.00	18	2832	0	0	0	0	2
SPR_00089	tRNA links to Rfam database...	0.95	0.90	1.00	18	2832	0	0	0	0	2
SPR_00090	tRNA links to Rfam database...	0.95	0.90	1.00	18	2832	0	0	0	0	2
SPR_00091	tRNA links to Rfam database...	0.95	0.90	1.00	18	2832	0	0	0	0	2
SPR_00095	tRNA links to Rfam database...	0.70	0.76	0.64	16	2825	9	7	2	0	5
SPR_00111	tRNA links to Rfam database...	0.98	0.95	1.00	20	2681	0	0	0	0	1
SPR_00112	tRNA links to Rfam database...	0.78	0.76	0.80	16	2681	5	3	1	1	5
SPR_00113	tRNA links to Rfam database...	0.82	0.80	0.84	16	2756	5	0	3	2	4
SPR_00114	tRNA links to Rfam database...	0.98	0.95	1.00	20	2681	1	0	0	1	1
SPR_00115	tRNA links to Rfam database...	0.98	0.95	1.00	20	2681	0	0	0	0	1
SPR_00116	tRNA links to Rfam database...	0.98	0.95	1.00	20	2681	1	0	0	1	1
SPR_00117	tRNA links to Rfam database...	0.87	0.95	0.80	20	2825	6	5	0	1	1
SPR_00121	tRNA links to Rfam database...	0.95	0.90	1.00	19	2756	2	0	0	2	2
SPR_00124	tRNA links to Rfam database...	0.95	0.91	1.00	20	2536	1	0	0	1	2
SPR_00126	-	0.23	0.20	0.29	4	2066	11	2	8	1	16
SPR_00127	-	-0.01	0.00	0.00	0	2397	19	3	15	1	18
SPR_00137	tRNA links to Rfam database...	0.83	0.81	0.85	17	2906	8	0	3	5	4
SPR_00138	tRNA links to Rfam database...	0.52	0.55	0.50	11	2904	12	6	5	1	9
SPR_00139	tRNA links to Rfam database...	0.98	0.95	1.00	20	2906	1	0	0	1	1
SPR_00141	tRNA links to Rfam database...	0.97	0.95	1.00	19	2756	1	0	0	1	1
SPR_00142	-	0.67	0.63	0.71	12	2611	6	2	3	1	7
SPR_00153	tRNA links to Rfam database...	0.98	0.95	1.00	20	2906	2	0	0	2	1
SPR_00155	tRNA links to Rfam database...	0.98	0.95	1.00	20	2906	0	0	0	0	1
SPR_00156	tRNA links to Rfam database...	0.93	0.90	0.95	19	2906	4	0	1	3	2
SPR_00163	tRNA links to Rfam database...	0.85	0.90	0.79	19	2826	6	5	0	1	2
SPR_00164	tRNA links to Rfam database...	0.98	0.95	1.00	20	2906	0	0	0	0	1
SPR_00166	-	0.52	0.53	0.53	10	2537	9	1	8	0	9
SPR_00167	tRNA links to Rfam database...	0.72	0.65	0.81	13	2540	4	1	2	1	7
SPR_00176	tRNA links to Rfam database...	0.53	0.55	0.52	11	2829	10	5	5	0	9
SPR_00177	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00178	tRNA links to Rfam database...	0.47	0.52	0.42	11	2824	15	5	10	0	10
SPR_00183	-	0.44	0.40	0.50	8	2834	8	0	8	0	12
SPR_00191	tRNA links to Rfam database...	0.51	0.52	0.50	11	2828	12	3	8	1	10
SPR_00200	tRNA links to Rfam database...	0.53	0.52	0.55	11	2830	10	3	6	1	10
SPR_00209	tRNA links to Rfam database...	0.50	0.58	0.44	11	3545	14	7	7	0	8
SPR_00213	tRNA links to Rfam database...	0.81	0.81	0.81	17	3807	6	1	3	2	4
SPR_00215	tRNA links to Rfam database...	0.68	0.65	0.72	13	3552	9	1	4	4	7
SPR_00218	tRNA links to Rfam database...	0.71	0.75	0.68	15	3719	11	1	6	4	5
SPR_00219	tRNA links to Rfam database...	0.82	0.80	0.84	16	3722	8	2	1	5	4
SPR_00220	tRNA links to Rfam database...	0.67	0.70	0.64	14	3719	12	4	4	4	6
SPR_00221	tRNA links to Rfam database...	0.19	0.19	0.19	4	3720	21	0	17	4	17
SPR_00223	tRNA links to Rfam database...	0.00	0.00	0.00	0	3555	18	3	12	3	20
SPR_00224	tRNA links to Rfam database...	0.53	0.55	0.52	11	3720	14	4	6	4	9
SPR_00225	tRNA links to Rfam database...	0.71	0.71	0.71	15	3720	10	3	3	4	6
SPR_00226	tRNA links to Rfam database...	0.24	0.24	0.25	5	3635	18	0	15	3	16
SPR_00227	tRNA links to Rfam database...	0.77	0.81	0.74	17	3463	9	3	3	3	4
SPR_00228	tRNA links to Rfam database...	0.87	0.95	0.79	19	3804	5	5	0	0	1
SPR_00229	tRNA links to Rfam database...	0.70	0.67	0.74	14	3384	8	0	5	3	7
SPR_00230	tRNA links to Rfam database...	0.46	0.48	0.45	10	3548	15	4	8	3	11
SPR_00235	tRNA links to Rfam database...	0.39	0.43	0.36	9	3716	16	7	9	0	12
SPR_00236	tRNA links to Rfam database...	0.49	0.45	0.53	9	3553	13	3	5	5	11
SPR_00246	tRNA links to Rfam database...	0.95	0.95	0.95	19	2681	4	0	1	3	1
SPR_00263	tRNA links to Rfam database...	0.60	0.67	0.54	14	3544	15	6	6	3	7
SPR_00271	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00273	tRNA links to Rfam database...	0.76	0.76	0.76	16	2829	5	0	5	0	5
SPR_00276	tRNA links to Rfam database...	0.98	0.95	1.00	20	2906	0	0	0	0	1
SPR_00277	tRNA links to Rfam database...	0.98	0.95	1.00	20	2906	0	0	0	0	1
SPR_00279	tRNA links to Rfam database...	0.90	1.00	0.81	21	2900	5	5	0	0	0
SPR_00281	-	0.50	0.47	0.53	8	2001	7	6	1	0	9
SPR_00289	tRNA links to Rfam database...	0.77	0.75	0.79	15	2907	6	2	2	2	5
SPR_00294	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00295	tRNA links to Rfam database...	0.95	0.90	1.00	19	2756	1	0	0	1	2
SPR_00297	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	0	0	0	0	0
SPR_00298	tRNA links to Rfam database...	0.60	0.65	0.57	13	2752	10	5	5	0	7
SPR_00309	tRNA links to Rfam database...	0.91	0.95	0.87	20	2903	4	3	0	1	1
SPR_00314	tRNA links to Rfam database...	0.75	0.86	0.67	18	2899	9	7	2	0	3
SPR_00315	tRNA links to Rfam database...	0.73	0.76	0.70	16	2903	8	0	7	1	5
SPR_00316	tRNA links to Rfam database...	0.98	0.95	1.00	20	2906	1	0	0	1	1
SPR_00317	tRNA links to Rfam database...	0.84	0.90	0.78	18	2903	5	5	0	0	2
SPR_00318	tRNA links to Rfam database...	0.98	0.95	1.00	20	2906	1	0	0	1	1
SPR_00320	tRNA links to Rfam database...	0.51	0.47	0.56	9	2759	8	2	5	1	10
SPR_00321	tRNA links to Rfam database...	0.85	0.90	0.79	19	2979	5	4	1	0	2
SPR_00327	tRNA links to Rfam database...	0.63	0.67	0.61	14	2980	9	5	4	0	7
SPR_00329	tRNA links to Rfam database...	0.86	0.86	0.86	18	2829	5	0	3	2	3
SPR_00331	tRNA links to Rfam database...	0.71	0.75	0.68	15	2753	7	6	1	0	5
SPR_00333	tRNA links to Rfam database...	0.65	0.67	0.64	14	2753	8	2	6	0	7
SPR_00339	tRNA links to Rfam database...	0.80	0.90	0.70	19	2748	8	7	1	0	2
SPR_00352	tRNA links to Rfam database...	0.68	0.71	0.65	15	2903	8	0	8	0	6
SPR_00353	tRNA links to Rfam database...	0.93	1.00	0.88	21	2826	3	3	0	0	0
SPR_00356	tRNA links to Rfam database...	0.98	0.95	1.00	20	2755	0	0	0	0	1
SPR_00357	tRNA links to Rfam database...	0.87	0.95	0.80	20	2901	5	5	0	0	1
SPR_00358	tRNA links to Rfam database...	0.89	1.00	0.80	20	2901	5	5	0	0	0
SPR_00359	tRNA links to Rfam database...	0.45	0.45	0.45	10	2904	12	4	8	0	12
SPR_00360	tRNA links to Rfam database...	0.36	0.36	0.36	8	2679	14	3	11	0	14
SPR_00362	-	0.50	0.54	0.47	7	1416	8	4	4	0	6
SPR_00363	-	0.27	0.27	0.29	4	1582	10	1	9	0	11
SPR_00364	-	0.72	0.65	0.81	13	2195	3	1	2	0	7
SPR_00365	-	0.57	0.55	0.60	12	2536	9	0	8	1	10
SPR_00366	-	0.70	0.70	0.70	14	2536	6	1	5	0	6
SPR_00367	-	0.47	0.45	0.50	10	2465	10	2	8	0	12
SPR_00369	tRNA links to Rfam database...	0.98	0.95	1.00	20	2755	0	0	0	0	1
SPR_00370	tRNA links to Rfam database...	-0.01	0.00	0.00	0	2756	19	2	17	0	21
SPR_00373	tRNA links to Rfam database...	0.88	0.90	0.86	19	2828	3	3	0	0	2
SPR_00374	tRNA links to Rfam database...	0.65	0.67	0.64	14	2828	8	3	5	0	7
SPR_00385	tRNA links to Rfam database...	0.51	0.55	0.48	11	4255	17	2	10	5	9
SPR_00386	tRNA links to Rfam database...	0.79	0.75	0.83	15	4168	7	1	2	4	5
SPR_00388	tRNA links to Rfam database...	0.76	0.76	0.76	16	4165	11	5	0	6	5
SPR_00389	tRNA links to Rfam database...	0.47	0.50	0.45	10	3983	18	3	9	6	10
SPR_00390	tRNA links to Rfam database...	0.28	0.29	0.27	6	4256	23	1	15	7	15
SPR_00391	tRNA links to Rfam database...	0.62	0.57	0.67	12	3810	12	0	6	6	9
SPR_00393	tRNA links to Rfam database...	0.42	0.40	0.44	8	3810	14	3	7	4	12
SPR_00394	tRNA links to Rfam database...	0.52	0.52	0.52	11	3634	14	5	5	4	10
SPR_00395	tRNA links to Rfam database...	0.78	0.76	0.80	16	3985	9	1	3	5	5
SPR_00398	-	-0.01	0.00	0.00	0	2194	19	2	15	2	13
SPR_00399	-	0.31	0.31	0.31	5	2469	12	5	6	1	11
SPR_00402	tRNA links to Rfam database...	0.71	0.76	0.67	16	2532	9	4	4	1	5
SPR_00412	tRNA links to Rfam database...	0.45	0.43	0.47	9	3636	14	2	8	4	12
SPR_00414	tRNA links to Rfam database...	0.63	0.67	0.61	14	3547	12	4	5	3	7
SPR_00415	tRNA links to Rfam database...	0.76	0.76	0.76	16	3549	8	3	2	3	5
SPR_00416	tRNA links to Rfam database...	0.65	0.67	0.64	14	3548	11	2	6	3	7
SPR_00417	tRNA links to Rfam database...	0.62	0.68	0.58	15	3544	14	3	8	3	7
SPR_00418	tRNA links to Rfam database...	0.62	0.68	0.58	15	3544	14	3	8	3	7
SPR_00426	tRNA links to Rfam database...	0.71	0.76	0.67	16	2979	11	4	4	3	5
SPR_00434	tRNA links to Rfam database...	0.75	0.86	0.67	18	2823	9	9	0	0	3
SPR_00435	tRNA links to Rfam database...	0.70	0.71	0.68	15	2828	7	4	3	0	6
SPR_00436	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	1	0	0	1	1
SPR_00437	tRNA links to Rfam database...	0.87	0.95	0.80	20	2750	6	5	0	1	1
SPR_00438	tRNA links to Rfam database...	0.98	0.95	1.00	20	2755	0	0	0	0	1
SPR_00439	tRNA links to Rfam database...	0.97	0.95	1.00	19	2682	1	0	0	1	1
SPR_00445	tRNA links to Rfam database...	0.82	0.80	0.84	16	2984	6	0	3	3	4
SPR_00452	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00455	tRNA links to Rfam database...	0.70	0.71	0.68	15	2828	7	0	7	0	6
SPR_00456	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	1	0	0	1	0
SPR_00458	tRNA links to Rfam database...	0.63	0.65	0.62	13	2829	8	3	5	0	7
SPR_00459	tRNA links to Rfam database...	0.38	0.35	0.41	7	2758	10	4	6	0	13
SPR_00461	tRNA links to Rfam database...	0.00	0.00	0.00	0	2556	0	0	0	0	19
SPR_00462	tRNA links to Rfam database...	0.76	0.74	0.78	14	2397	5	3	1	1	5
SPR_00467	tRNA links to Rfam database...	0.73	0.80	0.67	16	2826	8	1	7	0	4
SPR_00476	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	0	0	0	0	0
SPR_00478	tRNA links to Rfam database...	0.76	0.76	0.76	16	2754	5	0	5	0	5
SPR_00479	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00481	tRNA links to Rfam database...	0.95	0.90	1.00	19	2756	0	0	0	0	2
SPR_00482	tRNA links to Rfam database...	1.00	1.00	1.00	21	2680	0	0	0	0	0
SPR_00483	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00487	tRNA links to Rfam database...	0.95	0.91	1.00	20	2681	0	0	0	0	2
SPR_00489	tRNA links to Rfam database...	0.98	0.95	1.00	20	2681	1	0	0	1	1
SPR_00493	tRNA links to Rfam database...	0.82	0.82	0.82	18	2753	4	2	2	0	4
SPR_00496	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	0	0	0	0	0
SPR_00497	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	0	0	0	0	0
SPR_00498	tRNA links to Rfam database...	0.83	0.85	0.81	17	2982	5	0	4	1	3
SPR_00502	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00504	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	0	0	0	0	0
SPR_00505	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00506	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00509	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00512	tRNA links to Rfam database...	0.97	0.95	1.00	19	2907	0	0	0	0	1
SPR_00513	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00517	tRNA links to Rfam database...	0.27	0.25	0.29	5	2833	13	4	8	1	15
SPR_00518	tRNA links to Rfam database...	0.71	0.75	0.68	15	2904	7	3	4	0	5
SPR_00519	tRNA links to Rfam database...	0.77	0.71	0.83	15	2538	4	0	3	1	6
SPR_00520	tRNA links to Rfam database...	0.78	0.78	0.78	14	2538	4	3	1	0	4
SPR_00533	tRNA links to Rfam database...	0.70	0.76	0.64	16	2750	9	3	6	0	5
SPR_00541	tRNA links to Rfam database...	0.31	0.33	0.29	7	3462	18	6	11	1	14
SPR_00542	tRNA links to Rfam database...	0.53	0.57	0.50	12	3546	12	3	9	0	9
SPR_00544	tRNA links to Rfam database...	0.22	0.25	0.20	5	3545	20	8	12	0	15
SPR_00548	tRNA links to Rfam database...	0.51	0.52	0.50	11	3381	11	2	9	0	10
SPR_00550	tRNA links to Rfam database...	0.88	0.82	0.95	18	3809	5	0	1	4	4
SPR_00552	tRNA links to Rfam database...	0.66	0.68	0.65	13	2681	8	3	4	1	6
SPR_00557	tRNA links to Rfam database...	0.53	0.57	0.50	12	2826	12	3	9	0	9
SPR_00561	tRNA links to Rfam database...	0.56	0.62	0.52	13	2825	12	3	9	0	8
SPR_00590	tRNA links to Rfam database...	0.83	0.85	0.81	17	2982	5	1	3	1	3
SPR_00593	tRNA links to Rfam database...	0.61	0.58	0.65	11	2758	6	4	2	0	8
SPR_00595	tRNA links to Rfam database...	0.63	0.67	0.61	14	2752	9	6	3	0	7
SPR_00598	tRNA links to Rfam database...	0.73	0.76	0.70	16	2980	9	4	3	2	5
SPR_00610	tRNA links to Rfam database...	0.45	0.48	0.43	10	2533	13	4	9	0	11
SPR_00620	tRNA links to Rfam database...	0.81	0.81	0.81	17	2982	5	2	2	1	4
SPR_00629	-	0.52	0.47	0.58	7	1879	8	0	5	3	8
SPR_00632	tRNA links to Rfam database...	0.85	0.85	0.85	17	2536	3	2	1	0	3
SPR_00633	tRNA links to Rfam database...	0.81	0.85	0.77	17	2534	5	5	0	0	3
SPR_00721	tRNA links to Rfam database...	0.62	0.67	0.58	14	2902	10	2	8	0	7
SPR_00722	tRNA links to Rfam database...	0.76	0.80	0.73	16	2904	6	4	2	0	4
SPR_00750	tRNA links to Rfam database...	0.31	0.26	0.38	5	2543	9	0	8	1	14
SPR_00758	tRNA links to Rfam database...	0.68	0.76	0.62	16	2977	11	4	6	1	5
SPR_00760	tRNA links to Rfam database...	0.42	0.43	0.41	9	3548	16	0	13	3	12
SPR_00768	-	0.53	0.50	0.56	9	2064	8	0	7	1	9
SPR_00777	tRNA links to Rfam database...	0.56	0.55	0.58	11	2609	9	2	6	1	9
SPR_00810	tRNA links to Rfam database...	0.52	0.53	0.53	10	3551	13	3	6	4	9
SPR_00816	tRNA links to Rfam database...	0.32	0.35	0.30	7	3463	19	4	12	3	13
SPR_00832	-	0.27	0.27	0.29	4	1639	10	3	7	0	11
SPR_00867	tRNA links to Rfam database...	0.50	0.52	0.48	11	2903	12	2	10	0	10
SPR_00868	tRNA links to Rfam database...	0.67	0.71	0.63	15	2902	9	4	5	0	6
SPR_00882	tRNA links to Rfam database...	0.87	0.95	0.79	19	2604	5	5	0	0	1
SPR_00912	tRNA links to Rfam database...	0.50	0.52	0.48	11	2980	15	3	9	3	10
SPR_00913	tRNA links to Rfam database...	0.50	0.52	0.48	11	2980	16	4	8	4	10
SPR_00932	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	3	0	0	3	1
SPR_00938	-	0.34	0.33	0.36	5	1639	9	5	4	0	10
SPR_00943	tRNA links to Rfam database...	0.74	0.85	0.65	17	2530	9	6	3	0	3
SPR_00957	tRNA links to Rfam database...	1.00	1.00	1.00	21	2982	0	0	0	0	0
SPR_01040	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	0	0	0	0	0
SPR_01051	tRNA links to Rfam database...	0.98	0.95	1.00	20	2536	0	0	0	0	1
SPR_01088	tRNA links to Rfam database...	0.98	0.95	1.00	20	2906	0	0	0	0	1
SPR_01095	tRNA links to Rfam database...	0.76	0.76	0.76	16	2829	6	0	5	1	5
SPR_01103	-	0.97	0.93	1.00	14	1756	1	0	0	1	1
SPR_01106	tRNA links to Rfam database...	0.98	0.95	1.00	20	2536	1	0	0	1	1
SPR_01117	tRNA links to Rfam database...	1.00	1.00	1.00	21	2982	2	0	0	2	0
SPR_01143	tRNA links to Rfam database...	0.47	0.52	0.42	11	2530	15	8	7	0	10
SPR_01157	tRNA links to Rfam database...	0.84	0.86	0.82	18	2753	4	4	0	0	3
SRP_00001	Bacteria_large_SRP links to Rfam database...	-0.01	0.00	0.00	0	6752	34	1	33	0	40
SRP_00005	-	0.17	0.17	0.19	4	3984	17	1	16	0	20
SRP_00007	-	0.15	0.13	0.17	6	11900	31	0	29	2	39
SRP_00008	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	2906	20	2	18	0	25
SRP_00020	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	5538	27	2	25	0	33
SRP_00038	Bacteria_small_SRP links to Rfam database...	0.28	0.27	0.29	9	5019	22	4	18	0	24
SRP_00040	Bacteria_small_SRP links to Rfam database...	0.29	0.26	0.33	8	5541	16	2	14	0	23
SRP_00042	Bacteria_small_SRP links to Rfam database...	0.32	0.32	0.32	8	3980	18	5	12	1	17
SRP_00043	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	5023	27	5	22	0	29
SRP_00044	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	6073	32	6	26	0	32
SRP_00045	-	0.07	0.07	0.08	3	11895	37	3	34	0	41
SRP_00046	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	4733	20	0	20	0	32
SRP_00051	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	5427	33	10	23	0	30
SRP_00054	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	5538	27	2	25	0	32
SRP_00056	Bacteria_small_SRP links to Rfam database...	0.33	0.30	0.37	11	6411	19	3	16	0	26
SRP_00057	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	6299	29	4	25	0	35
SRP_00058	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	5749	29	5	24	0	34
SRP_00067	Bacteria_small_SRP links to Rfam database...	0.32	0.32	0.34	12	5743	23	2	21	0	26
SRP_00072	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6300	28	3	25	0	29
SRP_00074	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6526	30	8	21	1	29
SRP_00075	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	5534	31	3	28	0	34
SRP_00077	Bacteria_small_SRP links to Rfam database...	0.37	0.38	0.37	14	6632	24	3	21	0	23
SRP_00081	Bacteria_small_SRP links to Rfam database...	0.26	0.26	0.28	8	5536	21	4	17	0	23
SRP_00083	-	-0.01	0.00	0.00	0	4831	20	2	18	0	30
SRP_00084	Bacteria_small_SRP links to Rfam database...	0.17	0.15	0.20	5	5435	20	3	17	0	29
SRP_00093	-	0.36	0.36	0.36	9	14171	35	4	12	19	16
SRP_00094	Bacteria_small_SRP links to Rfam database...	0.28	0.29	0.27	7	4069	19	3	16	0	17
SRP_00095	Bacteria_small_SRP links to Rfam database...	0.26	0.28	0.25	7	3977	21	3	18	0	18
SRP_00098	Bacteria_small_SRP links to Rfam database...	0.06	0.05	0.08	2	6415	25	1	23	1	35
SRP_00101	-	0.61	0.56	0.67	14	3549	8	1	6	1	11
SRP_00105	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	5534	31	3	28	0	34
SRP_00106	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	5229	24	7	17	0	25
SRP_00107	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	3634	23	4	17	2	19
SRP_00119	-	0.00	0.00	0.00	0	13005	36	2	34	0	51
SRP_00121	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	4257	21	1	20	0	25
SRP_00128	Bacteria_small_SRP links to Rfam database...	0.25	0.25	0.26	9	6751	26	1	25	0	27
SRP_00132	Bacteria_small_SRP links to Rfam database...	0.14	0.14	0.15	4	4825	23	1	21	1	25
SRP_00134	Bacteria_large_SRP links to Rfam database...	0.22	0.21	0.25	6	5971	21	5	13	3	23
SRP_00135	-	0.00	0.00	0.00	0	14319	46	2	44	0	51
SRP_00137	Bacteria_small_SRP links to Rfam database...	0.37	0.40	0.34	10	4157	19	6	13	0	15
SRP_00138	-	-0.01	0.00	0.00	0	3980	25	6	19	0	27
SRP_00139	-	-0.01	0.00	0.00	0	2128	17	3	14	0	12
SRP_00140	-	0.39	0.36	0.44	14	8483	24	1	17	6	25
SRP_00141	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	6299	29	1	28	0	41
SRP_00145	Bacteria_small_SRP links to Rfam database...	0.32	0.30	0.35	12	6294	22	2	20	0	28
SRP_00146	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	5227	26	0	26	0	36
SRP_00161	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	2829	21	5	16	0	22
SRP_00162	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	2904	22	3	19	0	23
SRP_00163	Bacteria_small_SRP links to Rfam database...	0.28	0.27	0.30	7	3463	16	2	14	0	19
SRP_00164	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6869	34	4	30	0	35
SRP_00170	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	4070	25	3	22	0	25
SRP_00193	-	0.00	0.00	0.00	0	6875	28	1	27	0	36
SRP_00194	Bacteria_small_SRP links to Rfam database...	0.32	0.33	0.32	7	3218	15	2	13	0	14
SRP_00196	-	0.36	0.36	0.37	10	4629	18	1	16	1	18
SRP_00200	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6871	32	2	30	0	36
SRP_00209	Bacteria_small_SRP links to Rfam database...	0.16	0.19	0.15	5	4623	28	3	25	0	22
SRP_00213	Bacteria_small_SRP links to Rfam database...	0.39	0.40	0.38	10	4160	16	2	14	0	15
SRP_00214	-	0.30	0.29	0.32	7	3059	15	0	15	0	17
SRP_00215	Bacteria_small_SRP links to Rfam database...	0.48	0.40	0.59	10	3223	7	1	6	0	15
SRP_00216	Bacteria_small_SRP links to Rfam database...	0.48	0.44	0.52	12	3380	12	4	7	1	15
SRP_00217	Bacteria_small_SRP links to Rfam database...	0.29	0.29	0.30	7	3298	17	2	14	1	17
SRP_00219	Bacteria_small_SRP links to Rfam database...	0.50	0.43	0.59	10	3304	8	1	6	1	13
SRP_00221	-	0.49	0.52	0.46	11	3379	13	3	10	0	10
SRP_00222	Bacteria_small_SRP links to Rfam database...	0.49	0.48	0.50	12	3057	13	3	9	1	13
SRP_00223	-	0.20	0.20	0.21	4	3384	15	5	10	0	16
SRP_00227	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	5127	24	2	22	0	31
SRP_00229	Bacteria_small_SRP links to Rfam database...	0.15	0.15	0.17	4	5229	20	4	16	0	23
SRP_00231	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	5433	27	3	24	0	34
SRP_00233	Bacteria_small_SRP links to Rfam database...	0.63	0.61	0.67	20	5121	10	2	8	0	13
SRP_00235	-	-0.01	0.00	0.00	0	5025	25	0	25	0	33
SRP_00243	Bacteria_small_SRP links to Rfam database...	0.45	0.39	0.52	12	5128	11	1	10	0	19
SRP_00244	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6874	29	1	28	0	39
SRP_00245	-	0.17	0.18	0.17	4	13017	49	5	15	29	18
SRP_00250	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	6753	33	3	30	0	36
SRP_00251	Bacteria_small_SRP links to Rfam database...	0.08	0.08	0.09	3	6988	30	1	29	0	33
SRP_00256	-	0.17	0.18	0.16	4	4253	21	5	16	0	18
SRP_00266	Bacteria_small_SRP links to Rfam database...	0.32	0.31	0.33	9	4629	18	2	16	0	20
SRP_00268	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	4164	22	3	19	0	27
SRP_00269	Bacteria_small_SRP links to Rfam database...	0.23	0.21	0.27	7	5024	19	3	16	0	26
SRP_00270	Bacteria_small_SRP links to Rfam database...	0.40	0.39	0.41	12	4627	17	3	14	0	19
SRP_00271	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	3222	18	3	15	0	24
SRP_00273	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	6754	32	2	30	0	40
SRP_00274	Bacteria_small_SRP links to Rfam database...	0.28	0.26	0.30	10	6870	23	2	21	0	28
SRP_00284	-	0.36	0.34	0.38	10	3715	16	2	14	0	19
SRP_00285	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	3719	22	2	20	0	30
SRP_00295	Bacteria_small_SRP links to Rfam database...	0.11	0.11	0.13	4	6873	26	2	24	0	34
SRP_00303	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6642	28	3	25	0	32
SRP_00307	-	0.00	0.00	0.00	0	12841	39	5	34	0	43
SRP_00310	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	2907	19	3	16	0	23
SRP_00312	Bacteria_small_SRP links to Rfam database...	0.34	0.37	0.31	10	4154	22	5	17	0	17
SRP_00315	Bacteria_small_SRP links to Rfam database...	0.17	0.17	0.18	4	2904	18	3	15	0	19
SRP_00318	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	2986	17	2	15	0	23
SRP_00324	Bacteria_small_SRP links to Rfam database...	0.14	0.14	0.14	4	5328	24	4	20	0	25
SRP_00325	Bacteria_small_SRP links to Rfam database...	0.27	0.24	0.31	8	4345	18	1	17	0	25
SRP_00326	Bacteria_small_SRP links to Rfam database...	0.24	0.23	0.26	7	5023	20	3	17	0	24
SRP_00333	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	5127	24	2	22	0	34
SRP_00338	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	5460	0	0	0	0	36
SRP_00341	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	4725	28	0	28	0	31
SRP_00342	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	3984	21	4	17	0	25
SRP_00350	Bacteria_small_SRP links to Rfam database...	0.37	0.33	0.41	9	3894	14	0	13	1	18
SRP_00356	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	5030	20	2	18	0	30
SRP_00357	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	5330	26	0	26	0	36
SRP_00358	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6300	28	3	25	0	35
SRP_00363	Bacteria_small_SRP links to Rfam database...	0.49	0.40	0.60	12	4733	10	2	6	2	18
SRP_00365	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	3383	20	2	18	0	27
SRP_00367	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6756	30	1	29	0	35
SRP_00369	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	5750	28	1	27	0	35
SRP_00383	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	3215	25	2	23	0	24
TMR_00272	-	0.72	0.71	0.73	22	5121	10	0	8	2	9

^top

Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.

Table of contents:

Overview

Performance plots

Performance of McQFold - scored higher in this pairwise comparison

1. Total counts & total scores for McQFold

2. Individual counts for McQFold [ download as .csv ]

Performance of Vsfold5 - scored lower in this pairwise comparison

1. Total counts & total scores for Vsfold5

2. Individual counts for Vsfold5 [ download as .csv ]