Table of contents:
- Overview
- Performance Plots
- Performance of PETfold_pre2.0(20)
- scored higher in this pairwise comparison
- Performance of Multilign(seed)
- scored lower in this pairwise comparison
- Compile and download dataset for PETfold_pre2.0(20) & Multilign(seed) [.zip] - may take several seconds...
Overview
| Metric |
PETfold_pre2.0(20) |
|
Multilign(seed) |
|---|
| MCC |
0.473 |
>
|
0.334 |
| Average MCC ± 95% Confidence Intervals |
0.318
±
1.394
|
>
|
0.190
±
0.816
|
| Sensitivity |
0.326 |
>
|
0.186 |
| Positive Predictive Value |
0.700 |
>
|
0.615 |
| Total TP |
14 |
>
|
8 |
| Total TN |
3583 |
<
|
3590 |
| Total FP |
9 |
>
|
6 |
| Total FP CONTRA |
0 |
<
|
1 |
| Total FP INCONS |
6 |
>
|
4 |
| Total FP COMP |
3 |
>
|
1 |
| Total FN |
29 |
<
|
35 |
| P-value |
0.0 |
Performance plots
-
Comparison of performance of PETfold_pre2.0(20) and Multilign(seed). Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data
(individual counts for PETfold_pre2.0(20)
and Multilign(seed)).
-
Comparison of average Matthews Correlation Coefficients (MCCs) for PETfold_pre2.0(20) and Multilign(seed). The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data
(individual counts for PETfold_pre2.0(20)
and Multilign(seed)).
Performance of PETfold_pre2.0(20)
- scored higher in this pairwise comparison
1. Total counts & total scores for PETfold_pre2.0(20)
| Total Base Pair Counts |
|---|
| Total TP |
14 |
| Total TN |
3583 |
| Total FP |
9 |
| Total FP CONTRA |
0 |
| Total FP INCONS |
6 |
| Total FP COMP |
3 |
| Total FN |
29 |
| Total Scores |
|---|
| MCC |
0.473 |
| Average MCC ± 95% Confidence Intervals |
0.318
±
1.394
|
| Sensitivity |
0.326 |
| Positive Predictive Value |
0.700 |
| Nr of predictions |
3 |
Performance of Multilign(seed)
- scored lower in this pairwise comparison
1. Total counts & total scores for Multilign(seed)
| Total Base Pair Counts |
|---|
| Total TP |
8 |
| Total TN |
3590 |
| Total FP |
6 |
| Total FP CONTRA |
1 |
| Total FP INCONS |
4 |
| Total FP COMP |
1 |
| Total FN |
35 |
| Total Scores |
|---|
| MCC |
0.334 |
| Average MCC ± 95% Confidence Intervals |
0.190
±
0.816
|
| Sensitivity |
0.186 |
| Positive Predictive Value |
0.615 |
| Nr of predictions |
3 |
Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based
on the paper by Gardener & Giegerich, 2004.
| 
