CompaRNA - on-line benchmarks of RNA structure prediction methods

Laboratory of Structural Bioinformatics @ Adam Mickiewicz University in Poznan

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Overview

Metric	PknotsRG		RNAwolf
MCC	0.617	>	0.518
Average MCC ± 95% Confidence Intervals	0.633 ± 0.022	>	0.553 ± 0.022
Sensitivity	0.610	>	0.523
Positive Predictive Value	0.630	>	0.520
Total TP	11920	>	10233
Total TN	2891071	>	2890315
Total FP	8187	<	11835
Total FP CONTRA	1131	<	1397
Total FP INCONS	5873	<	8050
Total FP COMP	1183	<	2388
Total FN	7628	<	9315
P-value	3.56938820447e-08

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Performance plots

Comparison of performance of PknotsRG and RNAwolf. Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data (individual counts for PknotsRG and RNAwolf).
Average Matthews Correlation Coefficients (MCC) with 95% confidence intervals (CIs) were plotted for different RNA families, for which at least 3 members were present in the benchmarking dataset. 'n' denotes the number of MCCs used to calculate the average and CI. See tables below for raw data (individual counts for PknotsRG and RNAwolf).
Comparison of average Matthews Correlation Coefficients (MCCs) for PknotsRG and RNAwolf. The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data (individual counts for PknotsRG and RNAwolf).

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Performance of PknotsRG - scored higher in this pairwise comparison

1. Total counts & total scores for PknotsRG

Total Base Pair Counts
Total TP	11920
Total TN	2891071
Total FP	8187
Total FP CONTRA	1131
Total FP INCONS	5873
Total FP COMP	1183
Total FN	7628

Total Scores
MCC	0.617
Average MCC ± 95% Confidence Intervals	0.633 ± 0.022
Sensitivity	0.610
Positive Predictive Value	0.630
Nr of predictions	882

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2. Individual counts for PknotsRG [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00051	-	0.94	0.93	0.95	38	19070	24	0	2	22	3
ASE_00251	RNaseP_nuc links to Rfam database...	1.00	1.00	1.00	43	17723	22	0	0	22	0
CRW_00548	5S_rRNA links to Rfam database...	0.86	0.82	0.91	31	7347	5	0	3	2	7
CRW_00552	5S_rRNA links to Rfam database...	0.33	0.31	0.36	12	7107	23	2	19	2	27
CRW_00555	5S_rRNA links to Rfam database...	0.74	0.68	0.82	27	7593	6	0	6	0	13
CRW_00567	5S_rRNA links to Rfam database...	0.21	0.20	0.23	8	7468	29	3	24	2	32
CRW_00570	5S_rRNA links to Rfam database...	0.75	0.76	0.74	28	6865	14	0	10	4	9
CRW_00573	5S_rRNA links to Rfam database...	0.25	0.25	0.26	10	7102	28	0	28	0	30
CRW_01482	5S_rRNA links to Rfam database...	0.92	0.91	0.93	43	8732	8	0	3	5	4
CRW_01484	5S_rRNA links to Rfam database...	0.18	0.18	0.18	7	7465	32	4	27	1	32
CRW_01485	5S_rRNA links to Rfam database...	0.18	0.18	0.19	7	7466	30	2	28	0	32
CRW_01487	5S_rRNA links to Rfam database...	0.20	0.20	0.21	8	7465	30	3	27	0	33
CRW_01489	5S_rRNA links to Rfam database...	0.85	0.79	0.91	31	7469	5	0	3	2	8
CRW_01491	5S_rRNA links to Rfam database...	0.73	0.65	0.82	28	8351	9	0	6	3	15
CRW_01492	5S_rRNA links to Rfam database...	0.76	0.74	0.78	31	7586	14	0	9	5	11
CRW_01493	5S_rRNA links to Rfam database...	0.65	0.58	0.74	25	7841	15	0	9	6	18
CRW_01494	5S_rRNA links to Rfam database...	0.74	0.70	0.78	28	7104	9	0	8	1	12
CRW_01496	5S_rRNA links to Rfam database...	0.87	0.77	0.97	34	8093	7	0	1	6	10
CRW_01497	5S_rRNA links to Rfam database...	0.88	0.83	0.94	33	7105	5	0	2	3	7
CRW_01498	5S_rRNA links to Rfam database...	0.80	0.74	0.86	32	8091	7	0	5	2	11
CRW_01499	5S_rRNA links to Rfam database...	0.57	0.56	0.59	23	7962	17	3	13	1	18
CRW_01500	5S_rRNA links to Rfam database...	0.89	0.84	0.94	32	7716	5	0	2	3	6
CRW_01501	5S_rRNA links to Rfam database...	0.87	0.84	0.90	38	8473	7	0	4	3	7
CRW_01502	5S_rRNA links to Rfam database...	0.91	0.89	0.93	41	8341	7	0	3	4	5
CRW_01504	5S_rRNA links to Rfam database...	0.90	0.88	0.93	38	7834	7	0	3	4	5
CRW_01507	5S_rRNA links to Rfam database...	0.84	0.80	0.87	33	7465	7	0	5	2	8
CRW_01508	5S_rRNA links to Rfam database...	0.90	0.86	0.95	36	7963	7	0	2	5	6
CRW_01521	5S_rRNA links to Rfam database...	0.71	0.67	0.75	24	6871	11	0	8	3	12
CRW_01532	5S_rRNA links to Rfam database...	0.77	0.76	0.78	28	7104	13	0	8	5	9
CRW_01533	5S_rRNA links to Rfam database...	0.79	0.78	0.81	29	7104	13	0	7	6	8
CRW_01534	5S_rRNA links to Rfam database...	0.78	0.78	0.78	29	7103	13	0	8	5	8
CRW_01535	5S_rRNA links to Rfam database...	0.94	0.89	1.00	33	7107	4	0	0	4	4
CRW_01536	5S_rRNA links to Rfam database...	0.85	0.84	0.86	31	6985	5	0	5	0	6
CRW_01537	5S_rRNA links to Rfam database...	0.74	0.68	0.81	25	7109	12	0	6	6	12
CRW_01539	5S_rRNA links to Rfam database...	0.80	0.76	0.85	28	7107	11	0	5	6	9
CRW_01540	5S_rRNA links to Rfam database...	0.75	0.73	0.77	27	7105	12	0	8	4	10
CRW_01541	5S_rRNA links to Rfam database...	0.38	0.38	0.38	14	7103	24	6	17	1	23
CRW_01542	5S_rRNA links to Rfam database...	0.97	0.95	1.00	35	7105	4	0	0	4	2
CRW_01544	5S_rRNA links to Rfam database...	0.83	0.81	0.86	30	7105	8	0	5	3	7
CRW_01548	5S_rRNA links to Rfam database...	0.78	0.76	0.80	28	6986	12	0	7	5	9
CRW_01555	5S_rRNA links to Rfam database...	0.80	0.76	0.85	28	9012	11	0	5	6	9
CRW_01556	5S_rRNA links to Rfam database...	0.68	0.68	0.69	25	7104	15	0	11	4	12
CRW_01557	5S_rRNA links to Rfam database...	0.92	0.89	0.94	33	7105	6	0	2	4	4
CRW_01559	5S_rRNA links to Rfam database...	0.76	0.73	0.79	27	7226	13	0	7	6	10
CRW_01562	5S_rRNA links to Rfam database...	0.77	0.73	0.82	27	7107	9	1	5	3	10
CRW_01563	5S_rRNA links to Rfam database...	0.58	0.51	0.66	19	6874	11	2	8	1	18
CRW_01566	5S_rRNA links to Rfam database...	0.55	0.54	0.57	20	7105	17	1	14	2	17
CRW_01568	5S_rRNA links to Rfam database...	0.78	0.78	0.78	29	7103	13	0	8	5	8
CRW_01569	5S_rRNA links to Rfam database...	0.79	0.78	0.81	29	7104	12	0	7	5	8
CRW_01570	5S_rRNA links to Rfam database...	0.83	0.78	0.88	29	7107	10	0	4	6	8
CRW_01572	5S_rRNA links to Rfam database...	0.32	0.30	0.34	11	6989	21	4	17	0	26
CRW_01573	5S_rRNA links to Rfam database...	0.92	0.89	0.94	33	7225	6	0	2	4	4
CRW_01578	5S_rRNA links to Rfam database...	0.94	0.89	1.00	33	7107	4	0	0	4	4
CRW_01580	5S_rRNA links to Rfam database...	0.75	0.68	0.83	25	7110	9	0	5	4	12
CRW_01581	5S_rRNA links to Rfam database...	0.30	0.27	0.34	10	7111	20	0	19	1	27
CRW_01583	5S_rRNA links to Rfam database...	0.80	0.76	0.85	28	7107	9	0	5	4	9
CRW_01584	5S_rRNA links to Rfam database...	0.90	0.89	0.92	33	7104	7	0	3	4	4
CRW_01590	5S_rRNA links to Rfam database...	0.29	0.30	0.29	11	7102	27	6	21	0	26
CRW_01593	5S_rRNA links to Rfam database...	0.79	0.78	0.81	29	7104	12	0	7	5	8
CRW_01595	5S_rRNA links to Rfam database...	0.75	0.73	0.77	27	8480	13	0	8	5	10
CRW_01599	5S_rRNA links to Rfam database...	0.23	0.24	0.23	9	7101	30	5	25	0	28
CRW_01603	5S_rRNA links to Rfam database...	0.87	0.81	0.94	30	7108	5	0	2	3	7
CRW_01605	5S_rRNA links to Rfam database...	0.84	0.78	0.91	29	7108	7	0	3	4	8
CRW_01606	5S_rRNA links to Rfam database...	0.80	0.76	0.85	28	7107	8	0	5	3	9
CRW_01608	5S_rRNA links to Rfam database...	0.50	0.51	0.49	19	8346	20	3	17	0	18
CRW_01613	5S_rRNA links to Rfam database...	0.78	0.78	0.78	29	6984	11	0	8	3	8
CRW_01616	5S_rRNA links to Rfam database...	0.79	0.78	0.81	29	7104	13	0	7	6	8
CRW_01617	5S_rRNA links to Rfam database...	0.92	0.89	0.94	33	7105	6	0	2	4	4
CRW_01620	5S_rRNA links to Rfam database...	0.86	0.86	0.86	32	6984	8	0	5	3	5
CRW_01621	5S_rRNA links to Rfam database...	0.72	0.70	0.74	26	7105	12	0	9	3	11
CRW_01623	5S_rRNA links to Rfam database...	0.87	0.81	0.94	30	7108	3	0	2	1	7
CRW_01625	5S_rRNA links to Rfam database...	0.85	0.84	0.86	31	7104	8	0	5	3	6
NDB_00014	-	0.89	0.80	1.00	8	182	0	0	0	0	2
NDB_00015	-	0.38	0.40	0.40	4	266	6	0	6	0	6
NDB_00016	-	0.91	0.83	1.00	10	266	0	0	0	0	2
NDB_00047	-	0.91	0.83	1.00	10	266	0	0	0	0	2
NDB_00048	-	-0.02	0.00	0.00	0	1514	26	0	26	0	28
NDB_00049	-	0.92	0.85	1.00	11	314	0	0	0	0	2
NDB_00051	tRNA links to Rfam database...	0.84	0.71	1.00	17	2758	0	0	0	0	7
PDB_00001	-	-0.03	0.00	0.00	0	270	6	0	6	0	12
PDB_00002	-	1.00	1.00	1.00	8	202	0	0	0	0	0
PDB_00003	-	0.81	0.67	1.00	8	343	0	0	0	0	4
PDB_00004	-	0.86	0.74	1.00	14	806	0	0	0	0	5
PDB_00005	Tymo_tRNA-like links to Rfam database...	1.00	1.00	1.00	14	932	0	0	0	0	0
PDB_00006	-	1.00	1.00	1.00	14	689	0	0	0	0	0
PDB_00011	-	0.91	0.83	1.00	10	266	0	0	0	0	2
PDB_00012	mir-TAR links to Rfam database...	1.00	1.00	1.00	7	399	3	0	0	3	0
PDB_00013	-	1.00	1.00	1.00	10	396	1	0	0	1	0
PDB_00017	-	0.77	0.60	1.00	9	694	0	0	0	0	6
PDB_00018	-	0.20	0.20	0.22	4	1017	14	2	12	0	16
PDB_00019	-	0.74	0.75	0.75	6	245	2	0	2	0	2
PDB_00020	-	0.38	0.35	0.44	7	764	9	0	9	0	13
PDB_00021	-	1.00	1.00	1.00	8	182	0	0	0	0	0
PDB_00022	-	0.94	0.89	1.00	8	245	0	0	0	0	1
PDB_00032	-	0.89	0.80	1.00	12	891	1	0	0	1	3
PDB_00034	-	0.86	0.75	1.00	9	369	0	0	0	0	3
PDB_00035	-	0.94	0.89	1.00	8	202	0	0	0	0	1
PDB_00036	-	-0.01	0.00	0.00	0	3464	24	1	21	2	27
PDB_00039	-	-0.01	0.00	0.00	0	5318	38	0	38	0	45
PDB_00040	-	0.83	0.70	1.00	7	269	0	0	0	0	3
PDB_00041	-	1.00	1.00	1.00	12	618	0	0	0	0	0
PDB_00043	-	0.87	0.77	1.00	10	425	0	0	0	0	3
PDB_00048	-	1.00	1.00	1.00	9	291	1	0	0	1	0
PDB_00049	-	0.83	0.70	1.00	7	224	0	0	0	0	3
PDB_00053	-	1.00	1.00	1.00	11	424	0	0	0	0	0
PDB_00054	-	0.70	0.50	1.00	5	185	0	0	0	0	5
PDB_00056	-	0.93	0.88	1.00	14	616	0	0	0	0	2
PDB_00057	-	1.00	1.00	1.00	10	341	1	0	0	1	0
PDB_00065	-	0.77	0.60	1.00	6	400	1	0	0	1	4
PDB_00070	tRNA links to Rfam database...	0.68	0.67	0.70	16	2827	7	1	6	0	8
PDB_00074	-	-0.03	0.00	0.00	0	370	8	0	8	0	12
PDB_00081	-	0.94	0.89	1.00	8	182	0	0	0	0	1
PDB_00088	-	0.86	0.75	1.00	9	426	1	0	0	1	3
PDB_00096	-	0.82	0.75	0.90	9	315	1	0	1	0	3
PDB_00098	-	0.81	0.67	1.00	4	227	0	0	0	0	2
PDB_00102	-	0.93	0.88	1.00	7	224	0	0	0	0	1
PDB_00104	-	-0.02	0.00	0.00	0	616	14	0	14	0	16
PDB_00107	-	0.95	0.91	1.00	10	455	1	0	0	1	1
PDB_00108	-	1.00	1.00	1.00	7	203	0	0	0	0	0
PDB_00110	-	1.00	1.00	1.00	7	246	0	0	0	0	0
PDB_00113	-	0.94	0.89	1.00	8	223	0	0	0	0	1
PDB_00115	-	-0.03	0.00	0.00	0	547	14	0	14	0	16
PDB_00116	-	0.70	0.50	1.00	3	228	0	0	0	0	3
PDB_00119	-	0.95	0.90	1.00	9	244	0	0	0	0	1
PDB_00120	-	0.95	0.90	1.00	9	222	0	0	0	0	1
PDB_00121	-	0.95	0.90	1.00	9	222	0	0	0	0	1
PDB_00122	-	0.91	0.83	1.00	10	290	0	0	0	0	2
PDB_00123	-	-0.01	0.00	0.00	0	4151	35	0	35	0	36
PDB_00124	-	0.86	0.90	0.82	9	485	2	2	0	0	1
PDB_00125	-	-0.03	0.00	0.00	0	225	6	0	6	0	10
PDB_00128	-	0.50	0.43	0.60	6	486	4	1	3	0	8
PDB_00130	-	1.00	1.00	1.00	6	270	2	0	0	2	0
PDB_00132	-	0.86	0.75	1.00	9	426	0	0	0	0	3
PDB_00134	-	0.94	1.00	0.89	8	369	1	1	0	0	0
PDB_00136	-	0.76	0.73	0.79	19	2391	5	0	5	0	7
PDB_00137	-	0.87	0.77	1.00	10	396	0	0	0	0	3
PDB_00138	-	0.94	1.00	0.89	8	369	1	1	0	0	0
PDB_00142	-	0.91	0.83	1.00	10	425	0	0	0	0	2
PDB_00149	-	0.89	0.80	1.00	12	691	0	0	0	0	3
PDB_00150	-	0.95	0.90	1.00	9	291	1	0	0	1	1
PDB_00152	-	0.93	0.88	1.00	7	183	0	0	0	0	1
PDB_00153	-	0.84	0.80	0.89	8	244	1	0	1	0	2
PDB_00155	-	0.86	0.75	1.00	6	319	0	0	0	0	2
PDB_00157	-	0.28	0.24	0.33	7	3300	17	0	14	3	22
PDB_00158	-	0.77	0.60	1.00	12	849	0	0	0	0	8
PDB_00159	-	0.73	0.55	1.00	6	345	1	0	0	1	5
PDB_00160	-	0.94	0.89	1.00	8	268	0	0	0	0	1
PDB_00168	-	0.66	0.67	0.67	4	294	3	0	2	1	2
PDB_00169	-	0.83	0.70	1.00	7	224	0	0	0	0	3
PDB_00170	-	0.93	0.88	1.00	14	616	0	0	0	0	2
PDB_00171	-	0.81	0.67	1.00	8	427	0	0	0	0	4
PDB_00174	-	0.90	0.82	1.00	18	1017	0	0	0	0	4
PDB_00175	-	-0.01	0.00	0.00	0	4526	34	0	34	0	36
PDB_00178	-	0.90	0.82	1.00	9	519	1	0	0	1	2
PDB_00181	-	0.88	0.78	1.00	7	224	0	0	0	0	2
PDB_00182	-	0.88	0.78	1.00	7	246	0	0	0	0	2
PDB_00183	-	0.88	0.78	1.00	18	1467	0	0	0	0	5
PDB_00184	-	0.87	0.77	1.00	10	551	0	0	0	0	3
PDB_00185	-	0.55	0.50	0.61	14	2903	10	0	9	1	14
PDB_00190	-	0.95	0.90	1.00	9	222	0	0	0	0	1
PDB_00192	-	0.17	0.14	0.24	5	3219	16	0	16	0	31
PDB_00195	-	-0.01	0.00	0.00	0	3452	34	0	34	0	42
PDB_00196	-	0.28	0.29	0.31	8	1570	18	0	18	0	20
PDB_00197	-	0.80	0.86	0.75	6	292	2	1	1	0	1
PDB_00200	-	0.94	0.89	1.00	8	202	0	0	0	0	1
PDB_00201	-	0.77	0.60	1.00	6	319	0	0	0	0	4
PDB_00202	-	0.96	0.93	1.00	13	548	1	0	0	1	1
PDB_00203	-	0.96	0.92	1.00	12	549	0	0	0	0	1
PDB_00205	-	0.84	0.71	1.00	10	425	0	0	0	0	4
PDB_00206	-	1.00	1.00	1.00	8	268	0	0	0	0	0
PDB_00207	-	0.88	0.79	1.00	11	367	0	0	0	0	3
PDB_00209	-	0.96	1.00	0.92	11	549	1	1	0	0	0
PDB_00211	-	0.89	0.80	1.00	8	182	0	0	0	0	2
PDB_00213	Gammaretro_CES links to Rfam database...	0.87	0.83	0.92	34	5013	3	2	1	0	7
PDB_00214	-	0.73	0.55	1.00	6	400	0	0	0	0	5
PDB_00215	-	-0.02	0.00	0.00	0	1106	22	0	22	0	24
PDB_00219	-	1.00	1.00	1.00	7	203	0	0	0	0	0
PDB_00221	-	0.88	0.78	1.00	7	246	0	0	0	0	2
PDB_00224	-	0.93	0.88	1.00	7	183	0	0	0	0	1
PDB_00229	tRNA links to Rfam database...	0.44	0.43	0.45	10	2753	12	3	9	0	13
PDB_00234	-	0.81	0.67	1.00	8	268	0	0	0	0	4
PDB_00236	-	-0.02	0.00	0.00	0	1110	18	0	18	0	24
PDB_00237	-	0.88	0.78	1.00	7	371	1	0	0	1	2
PDB_00239	-	0.78	0.61	1.00	11	809	0	0	0	0	7
PDB_00243	-	1.00	1.00	1.00	12	618	0	0	0	0	0
PDB_00248	-	0.91	0.83	1.00	10	266	0	0	0	0	2
PDB_00249	-	-0.02	0.00	0.00	0	274	2	0	2	0	11
PDB_00250	-	0.82	0.72	0.95	18	1751	3	0	1	2	7
PDB_00252	-	0.97	0.93	1.00	14	766	2	0	0	2	1
PDB_00254	-	-0.04	0.00	0.00	0	266	10	0	10	0	12
PDB_00256	-	0.49	0.75	0.33	3	316	7	6	0	1	1
PDB_00257	-	0.95	0.91	1.00	10	341	0	0	0	0	1
PDB_00258	-	1.00	1.00	1.00	8	245	0	0	0	0	0
PDB_00261	-	0.86	0.75	1.00	12	484	0	0	0	0	4
PDB_00262	-	0.25	0.25	0.27	6	1106	16	0	16	0	18
PDB_00264	-	-0.01	0.00	0.00	0	1113	15	0	15	0	18
PDB_00267	-	-0.03	0.00	0.00	0	366	12	0	12	0	14
PDB_00286	-	-0.03	0.00	0.00	0	184	8	0	6	2	6
PDB_00293	-	0.32	0.42	0.26	5	1109	14	9	5	0	7
PDB_00307	-	0.24	0.22	0.26	10	11137	28	4	24	0	35
PDB_00312	-	0.46	0.44	0.50	4	427	4	0	4	0	5
PDB_00313	tRNA links to Rfam database...	0.75	0.79	0.71	15	2680	9	2	4	3	4
PDB_00317	-	1.00	1.00	1.00	10	368	0	0	0	0	0
PDB_00326	-	0.57	0.50	0.67	14	3720	7	0	7	0	14
PDB_00327	tRNA links to Rfam database...	0.56	0.52	0.60	12	3061	8	0	8	0	11
PDB_00339	-	0.83	0.69	1.00	11	655	0	0	0	0	5
PDB_00341	-	0.20	0.19	0.25	3	691	9	0	9	0	13
PDB_00342	-	-0.02	0.00	0.00	0	762	18	0	18	0	10
PDB_00343	-	0.68	0.62	0.76	13	1579	5	0	4	1	8
PDB_00347	-	0.89	0.80	1.00	16	1160	0	0	0	0	4
PDB_00349	-	0.35	0.29	0.44	4	937	5	0	5	0	10
PDB_00351	-	0.32	0.25	0.43	3	554	4	0	4	0	9
PDB_00352	-	0.89	0.79	1.00	15	1210	0	0	0	0	4
PDB_00357	-	-0.01	0.00	0.00	0	770	10	4	6	0	10
PDB_00358	-	0.00	0.00	0.00	0	10539	46	6	40	0	47
PDB_00362	tRNA links to Rfam database...	0.98	0.95	1.00	21	2829	0	0	0	0	1
PDB_00365	-	0.96	0.93	1.00	13	422	0	0	0	0	1
PDB_00370	-	0.09	0.12	0.07	3	15179	45	12	31	2	22
PDB_00371	-	0.89	0.80	1.00	12	549	0	0	0	0	3
PDB_00377	-	1.00	1.00	1.00	12	516	0	0	0	0	0
PDB_00378	-	0.96	0.93	1.00	13	690	0	0	0	0	1
PDB_00392	tRNA links to Rfam database...	0.16	0.19	0.15	4	2824	22	7	15	0	17
PDB_00400	-	-0.01	0.00	0.00	0	3136	24	0	24	0	34
PDB_00402	tRNA links to Rfam database...	0.27	0.30	0.26	7	2748	20	2	18	0	16
PDB_00411	-	0.81	0.67	1.00	10	585	0	0	0	0	5
PDB_00417	-	0.11	0.11	0.11	6	14142	48	6	42	0	50
PDB_00420	-	0.89	0.80	1.00	8	488	3	0	0	3	2
PDB_00421	-	0.23	0.23	0.23	10	11432	34	2	32	0	33
PDB_00425	tRNA links to Rfam database...	0.40	0.41	0.41	9	2679	13	2	11	0	13
PDB_00430	tRNA links to Rfam database...	0.73	0.72	0.75	18	3216	6	3	3	0	7
PDB_00431	tRNA links to Rfam database...	0.68	0.70	0.67	14	2190	9	0	7	2	6
PDB_00433	-	0.18	0.18	0.20	6	6640	24	2	22	0	28
PDB_00447	-	0.97	1.00	0.94	44	7093	3	3	0	0	0
PDB_00454	-	0.84	0.81	0.87	26	2671	4	0	4	0	6
PDB_00474	tRNA links to Rfam database...	0.96	0.91	1.00	21	2680	2	0	0	2	2
PDB_00475	-	0.30	0.34	0.27	11	10837	35	8	22	5	21
PDB_00481	-	-0.01	0.00	0.00	0	1871	20	0	20	0	26
PDB_00513	-	1.00	1.00	1.00	7	224	0	0	0	0	0
PDB_00522	-	0.56	0.56	0.59	10	1111	7	0	7	0	8
PDB_00526	-	-0.01	0.00	0.00	0	294	6	1	5	0	3
PDB_00527	-	-0.02	0.00	0.00	0	294	6	1	5	0	5
PDB_00537	-	0.94	0.89	1.00	8	398	0	0	0	0	1
PDB_00553	mir-TAR links to Rfam database...	1.00	1.00	1.00	11	454	0	0	0	0	0
PDB_00565	-	0.77	0.70	0.85	35	8087	7	0	6	1	15
PDB_00569	-	0.00	0.00	0.00	0	11428	48	2	46	0	45
PDB_00570	-	0.90	0.82	1.00	18	2260	0	0	0	0	4
PDB_00571	tRNA links to Rfam database...	0.17	0.16	0.19	4	3300	17	6	11	0	21
PDB_00573	-	0.73	0.71	0.75	24	6638	12	0	8	4	10
PDB_00584	-	0.58	0.47	0.73	8	1474	3	0	3	0	9
PDB_00593	-	0.42	0.43	0.42	20	11428	28	6	22	0	26
PDB_00599	-	0.96	0.93	1.00	13	548	0	0	0	0	1
PDB_00603	-	0.95	0.90	1.00	9	244	0	0	0	0	1
PDB_00611	-	-0.01	0.00	0.00	0	770	10	2	8	0	11
PDB_00617	-	0.95	0.90	1.00	9	267	0	0	0	0	1
PDB_00627	-	0.72	0.71	0.75	12	1637	6	0	4	2	5
PDB_00629	-	-0.01	0.00	0.00	0	1636	17	4	13	0	23
PDB_00637	-	0.84	0.86	0.82	18	2324	4	3	1	0	3
PDB_00648	-	0.96	0.92	1.00	12	849	0	0	0	0	1
PDB_00663	-	-0.02	0.00	0.00	0	926	20	4	16	0	10
PDB_00667	tRNA links to Rfam database...	0.71	0.68	0.75	15	2830	6	4	1	1	7
PDB_00679	-	0.10	0.11	0.10	6	17520	52	4	48	0	50
PDB_00681	-	-0.01	0.00	0.00	0	1256	19	2	17	0	19
PDB_00682	-	-0.03	0.00	0.00	0	482	14	0	14	0	16
PDB_00686	-	0.94	0.89	1.00	17	686	0	0	0	0	2
PDB_00687	-	0.35	0.33	0.40	4	620	6	0	6	0	8
PDB_00692	-	0.67	0.60	0.75	12	1209	4	0	4	0	8
PDB_00693	-	0.94	0.88	1.00	15	1161	0	0	0	0	2
PDB_00698	-	0.94	0.89	1.00	17	844	0	0	0	0	2
PDB_00702	-	0.91	0.89	0.94	32	4337	4	0	2	2	4
PDB_00705	-	1.00	1.00	1.00	8	245	1	0	0	1	0
PDB_00709	-	-0.02	0.00	0.00	0	766	14	0	14	0	16
PDB_00710	-	-0.02	0.00	0.00	0	770	10	0	10	0	16
PDB_00713	-	0.43	0.43	0.45	9	1996	11	0	11	0	12
PDB_00716	HDV_ribozyme links to Rfam database...	-0.01	0.00	0.00	0	2675	27	1	25	1	23
PDB_00724	-	-0.01	0.00	0.00	0	2122	23	0	23	0	29
PDB_00725	-	0.89	0.80	1.00	12	583	0	0	0	0	3
PDB_00726	-	0.88	0.78	1.00	7	344	1	0	0	1	2
PDB_00727	-	1.00	1.00	1.00	7	554	3	0	0	3	0
PDB_00728	-	0.97	0.93	1.00	14	482	0	0	0	0	1
PDB_00732	-	0.30	0.30	0.32	9	2975	20	0	19	1	21
PDB_00733	-	0.23	0.23	0.23	7	2896	24	2	21	1	23
PDB_00734	-	0.83	0.70	1.00	7	224	0	0	0	0	3
PDB_00737	-	0.95	0.91	1.00	10	341	0	0	0	0	1
PDB_00740	-	0.79	0.64	1.00	7	224	0	0	0	0	4
PDB_00741	Entero_5_CRE links to Rfam database...	0.87	0.76	1.00	13	690	0	0	0	0	4
PDB_00746	-	0.89	0.84	0.94	32	4719	4	0	2	2	6
PDB_00750	-	0.41	0.39	0.44	19	11892	26	0	24	2	30
PDB_00751	-	0.87	0.77	1.00	10	585	2	0	0	2	3
PDB_00752	-	0.90	0.82	1.00	36	7345	2	0	0	2	8
PDB_00754	-	0.34	0.42	0.29	5	1468	14	4	8	2	7
PDB_00767	-	-0.01	0.00	0.00	0	2185	26	8	18	0	20
PDB_00800	-	0.30	0.31	0.30	9	2050	21	2	19	0	20
PDB_00804	-	0.00	0.00	0.00	0	15346	56	10	44	2	50
PDB_00806	-	0.47	0.40	0.56	10	1812	9	0	8	1	15
PDB_00807	-	0.71	0.61	0.82	14	1874	7	0	3	4	9
PDB_00809	-	0.88	0.79	1.00	11	485	0	0	0	0	3
PDB_00810	s2m links to Rfam database...	0.91	0.82	1.00	14	1067	0	0	0	0	3
PDB_00815	-	0.58	0.56	0.63	5	622	4	0	3	1	4
PDB_00823	-	-0.04	0.00	0.00	0	183	7	0	7	0	9
PDB_00828	Purine links to Rfam database...	0.88	0.78	1.00	21	2464	0	0	0	0	6
PDB_00829	Purine links to Rfam database...	0.86	0.75	1.00	18	2260	0	0	0	0	6
PDB_00842	-	1.00	1.00	1.00	8	370	0	0	0	0	0
PDB_00851	-	0.45	0.39	0.53	16	4723	14	0	14	0	25
PDB_00855	-	1.00	1.00	1.00	10	455	1	0	0	1	0
PDB_00857	-	1.00	1.00	1.00	15	1066	0	0	0	0	0
PDB_00863	-	0.71	0.61	0.85	11	977	2	0	2	0	7
PDB_00864	-	0.64	0.54	0.77	34	12997	11	0	10	1	29
PDB_00865	-	0.96	0.92	1.00	11	340	0	0	0	0	1
PDB_00868	-	0.88	1.00	0.78	14	1308	4	4	0	0	0
PDB_00870	-	-0.02	0.00	0.00	0	1109	19	0	19	0	16
PDB_00871	-	-0.02	0.00	0.00	0	1106	22	0	22	0	24
PDB_00873	-	-0.01	0.00	0.00	0	4514	46	0	46	0	48
PDB_00874	-	0.10	0.10	0.14	2	932	12	2	10	0	18
PDB_00876	HIV_FE links to Rfam database...	0.97	0.95	1.00	19	971	0	0	0	0	1
PDB_00878	-	0.96	0.92	1.00	11	485	0	0	0	0	1
PDB_00879	-	0.78	0.69	0.87	27	5019	6	0	4	2	12
PDB_00883	-	1.00	1.00	1.00	12	618	0	0	0	0	0
PDB_00885	-	0.97	0.94	1.00	17	803	0	0	0	0	1
PDB_00886	-	-0.01	0.00	0.00	0	4148	38	0	38	0	40
PDB_00890	-	1.00	1.00	1.00	14	689	0	0	0	0	0
PDB_00891	-	-0.02	0.00	0.00	0	927	19	6	13	0	15
PDB_00892	-	-0.01	0.00	0.00	0	2534	22	4	18	0	15
PDB_00897	-	0.56	0.52	0.59	32	11422	22	2	20	0	29
PDB_00906	-	-0.01	0.00	0.00	0	6632	38	0	38	0	48
PDB_00918	-	0.93	1.00	0.88	7	317	1	1	0	0	0
PDB_00923	-	1.00	1.00	1.00	6	184	0	0	0	0	0
PDB_00924	-	0.96	0.92	1.00	33	3622	0	0	0	0	3
PDB_00925	-	0.95	0.91	1.00	10	341	1	0	0	1	1
PDB_00928	-	0.66	0.63	0.71	5	293	2	0	2	0	3
PDB_00929	-	-0.02	0.00	0.00	0	768	12	0	12	0	20
PDB_00932	-	0.77	0.77	0.77	10	807	3	0	3	0	3
PDB_00937	-	0.94	0.89	1.00	16	614	0	0	0	0	2
PDB_00939	-	0.27	0.29	0.26	13	10246	37	7	30	0	32
PDB_00943	-	-0.01	0.00	0.00	0	1423	10	2	6	2	15
PDB_00945	-	0.66	0.60	0.75	6	457	2	0	2	0	4
PDB_00960	-	-0.03	0.00	0.00	0	394	12	2	10	0	10
PDB_00961	-	1.00	1.00	1.00	10	1760	12	0	0	12	0
PDB_00964	-	1.00	1.00	1.00	9	621	4	0	0	4	0
PDB_00966	-	-0.03	0.00	0.00	0	245	8	2	6	0	7
PDB_00967	-	0.00	0.00	0.00	0	12038	52	7	45	0	48
PDB_00973	-	0.52	0.50	0.57	4	344	3	0	3	0	4
PDB_00974	-	-0.02	0.00	0.00	0	372	6	0	6	0	9
PDB_00979	-	0.22	0.21	0.24	10	11740	31	0	31	0	38
PDB_00980	-	0.41	0.44	0.38	18	11128	29	6	23	0	23
PDB_00986	-	0.88	0.79	1.00	11	424	0	0	0	0	3
PDB_00987	-	0.46	0.38	0.60	6	551	4	0	4	0	10
PDB_00989	-	0.91	0.83	1.00	30	2973	0	0	0	0	6
PDB_00994	-	0.11	0.12	0.10	5	10537	46	5	38	3	37
PDB_01000	-	0.45	0.50	0.42	15	10842	31	7	14	10	15
PDB_01001	tRNA links to Rfam database...	0.52	0.56	0.50	10	2125	10	3	7	0	8
PDB_01002	tRNA links to Rfam database...	0.95	0.90	1.00	19	2756	2	0	0	2	2
PDB_01008	-	1.00	1.00	1.00	12	583	0	0	0	0	0
PDB_01009	tRNA links to Rfam database...	0.52	0.57	0.48	12	2460	13	5	8	0	9
PDB_01017	-	-0.03	0.00	0.00	0	422	13	0	13	0	14
PDB_01019	-	-0.03	0.00	0.00	0	422	13	0	13	0	14
PDB_01020	Purine links to Rfam database...	0.23	0.22	0.26	5	2259	14	2	12	0	18
PDB_01025	-	1.00	1.00	1.00	9	244	0	0	0	0	0
PDB_01035	-	0.94	0.88	1.00	23	1517	0	0	0	0	3
PDB_01040	-	0.30	0.30	0.33	6	1110	12	0	12	0	14
PDB_01044	-	1.00	1.00	1.00	16	930	3	0	0	3	0
PDB_01045	-	0.98	0.96	1.00	22	1203	1	0	0	1	1
PDB_01050	UnaL2 links to Rfam database...	0.92	0.85	1.00	11	619	2	0	0	2	2
PDB_01051	Telomerase-cil links to Rfam database...	0.88	0.85	0.92	11	891	5	0	1	4	2
PDB_01053	tRNA links to Rfam database...	1.00	1.00	1.00	16	1362	0	0	0	0	0
PDB_01054	-	0.45	0.47	0.43	20	11735	26	6	20	0	23
PDB_01056	-	0.94	0.89	1.00	8	245	1	0	0	1	1
PDB_01057	-	1.00	1.00	1.00	8	202	0	0	0	0	0
PDB_01059	-	0.93	1.00	0.88	7	223	1	1	0	0	0
PDB_01060	-	-0.01	0.00	0.00	0	1990	26	0	26	0	21
PDB_01061	-	0.14	0.15	0.16	6	3122	32	0	32	0	34
PDB_01062	-	-0.01	0.00	0.00	0	937	9	0	9	0	16
PDB_01065	-	-0.03	0.00	0.00	0	225	6	0	6	0	10
PDB_01070	-	0.14	0.13	0.15	7	12673	41	2	38	1	47
PDB_01071	-	0.69	0.62	0.80	8	396	2	0	2	0	5
PDB_01073	SAM links to Rfam database...	0.75	0.65	0.88	22	4346	4	0	3	1	12
PDB_01074	-	-0.01	0.00	0.00	0	2746	29	3	26	0	25
PDB_01075	-	0.90	0.81	1.00	26	2389	0	0	0	0	6
PDB_01077	-	0.86	0.79	0.94	15	1937	2	0	1	1	4
PDB_01084	-	1.00	1.00	1.00	7	224	0	0	0	0	0
PDB_01092	glmS links to Rfam database...	0.71	0.67	0.74	35	10106	13	2	10	1	17
PDB_01097	-	0.93	0.88	1.00	7	203	0	0	0	0	1
PDB_01099	-	0.85	0.73	1.00	8	268	0	0	0	0	3
PDB_01100	-	0.67	0.59	0.76	13	1468	4	0	4	0	9
PDB_01108	-	1.00	1.00	1.00	9	222	0	0	0	0	0
PDB_01114	TPP links to Rfam database...	0.44	0.37	0.53	10	2831	9	0	9	0	17
PDB_01117	-	0.74	0.65	0.85	11	767	2	0	2	0	6
PDB_01118	-	0.92	0.84	1.00	16	1580	3	0	0	3	3
PDB_01119	-	0.92	0.86	1.00	12	618	0	0	0	0	2
PDB_01126	-	0.48	0.50	0.47	14	3051	18	2	14	2	14
PDB_01127	-	-0.01	0.00	0.00	0	976	15	0	14	1	14
PDB_01128	-	0.92	0.85	1.00	23	2752	0	0	0	0	4
PDB_01130	-	-0.01	0.00	0.00	0	1748	22	5	17	0	20
PDB_01133	-	1.00	1.00	1.00	10	341	0	0	0	0	0
PDB_01135	-	-0.02	0.00	0.00	0	397	9	2	7	0	9
PDB_01137	-	-0.02	0.00	0.00	0	321	4	2	2	0	8
PDB_01138	-	-0.03	0.00	0.00	0	314	11	0	11	0	7
PDB_01145	-	1.00	1.00	1.00	14	766	2	0	0	2	0
PDB_01150	-	0.93	0.88	1.00	7	224	0	0	0	0	1
PDB_01152	HIV_FS2 links to Rfam database...	0.96	0.93	1.00	13	548	0	0	0	0	1
PDB_01154	-	0.90	0.82	1.00	9	397	0	0	0	0	2
PDB_01156	-	-0.01	0.00	0.00	0	3799	29	0	29	0	35
PDB_01160	-	0.34	0.35	0.33	7	2059	14	4	10	0	13
PDB_01162	-	0.55	0.56	0.56	5	1531	7	0	4	3	4
PDB_01163	-	0.98	0.95	1.00	21	1014	0	0	0	0	1
PDB_01164	-	0.96	0.92	1.00	24	1516	0	0	0	0	2
PDB_01167	-	0.86	0.75	1.00	6	184	0	0	0	0	2
PDB_01168	-	0.86	0.75	1.00	6	184	0	0	0	0	2
PDB_01178	-	0.84	0.71	1.00	10	518	0	0	0	0	4
PDB_01187	-	0.57	0.52	0.63	27	9968	17	0	16	1	25
PDB_01194	-	0.73	0.60	0.90	9	486	1	1	0	0	6
PDB_01199	-	0.18	0.17	0.22	4	2127	14	0	14	0	20
PDB_01201	-	0.82	0.68	1.00	15	1113	0	0	0	0	7
PDB_01203	-	0.71	0.63	0.80	12	1161	3	2	1	0	7
PDB_01205	-	-0.02	0.00	0.00	0	1015	20	4	16	0	18
PDB_01208	-	0.83	0.70	1.00	14	1162	0	0	0	0	6
PDB_01209	-	0.83	0.70	1.00	14	1162	0	0	0	0	6
PDB_01212	-	0.83	0.70	1.00	14	1162	0	0	0	0	6
PDB_01213	-	0.88	0.78	1.00	14	1067	0	0	0	0	4
PDB_01216	-	0.89	0.80	1.00	16	1160	0	0	0	0	4
PDB_01219	-	-0.02	0.00	0.00	0	928	18	0	18	0	20
PDB_01236	ykoK links to Rfam database...	0.70	0.67	0.73	36	11579	16	0	13	3	18
PDB_01237	-	1.00	1.00	1.00	8	268	0	0	0	0	0
PDB_01249	-	0.31	0.33	0.29	18	11113	44	8	36	0	36
PDB_01250	-	0.10	0.10	0.10	4	12051	35	8	27	0	37
PDB_01251	-	0.87	0.77	1.00	10	315	0	0	0	0	3
PDB_01255	-	0.70	0.63	0.80	35	12517	15	0	9	6	21
PDB_01260	-	0.41	0.36	0.47	9	1811	10	0	10	0	16
PDB_01262	-	0.00	0.00	0.00	0	190	0	0	0	0	8
PDB_01275	-	0.26	0.24	0.28	17	18275	47	2	42	3	54
PDB_01281	-	-0.03	0.00	0.00	0	366	12	0	12	0	14
PDB_01299	-	0.90	0.87	0.93	13	889	1	1	0	0	2
PDB_01309	-	-0.01	0.00	0.00	0	9118	62	9	53	0	39
PDB_01313	-	-0.03	0.00	0.00	0	270	6	4	2	0	8
PDB_01325	-	0.91	0.83	1.00	10	266	0	0	0	0	2
PDB_01332	-	1.00	1.00	1.00	9	342	0	0	0	0	0
PDB_01337	-	-0.02	0.00	0.00	0	552	9	2	7	0	11
PDB_01338	-	-0.03	0.00	0.00	0	269	7	2	5	0	8
PDB_01340	-	0.93	0.88	1.00	7	293	0	0	0	0	1
RFA_00389	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00390	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00391	Hammerhead_3 links to Rfam database...	0.93	0.87	1.00	13	1418	2	0	0	2	2
RFA_00396	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	2	0	0	2	1
RFA_00402	Hammerhead_3 links to Rfam database...	0.31	0.33	0.29	5	1414	13	1	11	1	10
RFA_00409	Hammerhead_3 links to Rfam database...	0.55	0.53	0.57	8	1417	7	1	5	1	7
RFA_00416	Hammerhead_3 links to Rfam database...	0.93	0.93	0.93	14	1470	4	0	1	3	1
RFA_00420	-	0.93	0.93	0.93	14	3306	14	0	1	13	1
RFA_00425	Hammerhead_3 links to Rfam database...	0.93	0.87	1.00	13	1640	4	0	0	4	2
RFA_00427	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1471	2	0	0	2	1
RFA_00429	-	1.00	1.00	1.00	9	771	2	0	0	2	0
RFA_00433	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00434	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00436	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00440	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1470	2	0	0	2	0
RFA_00442	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00444	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1525	1	0	0	1	0
RFA_00446	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1471	2	0	0	2	1
RFA_00449	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1471	2	0	0	2	1
RFA_00582	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	5980	21	0	0	21	0
RFA_00583	Y_RNA links to Rfam database...	0.48	0.47	0.50	7	4936	21	0	7	14	8
RFA_00584	Y_RNA links to Rfam database...	0.80	0.80	0.80	12	2911	17	0	3	14	3
RFA_00585	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4836	11	0	0	11	0
RFA_00586	Y_RNA links to Rfam database...	0.89	0.80	1.00	12	3904	11	0	0	11	3
RFA_00587	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4836	12	0	0	12	0
RFA_00588	Y_RNA links to Rfam database...	0.93	0.87	1.00	13	4547	12	0	0	12	2
RFA_00589	Y_RNA links to Rfam database...	0.93	0.87	1.00	13	4358	16	0	0	16	2
RFA_00590	-	0.89	0.80	1.00	12	5344	15	0	0	15	3
RFA_00594	Y_RNA links to Rfam database...	0.97	0.93	1.00	14	2761	11	0	0	11	1
RFA_00596	Y_RNA links to Rfam database...	0.00	0.00	0.00	0	5981	23	4	10	9	15
RFA_00603	Telomerase-cil links to Rfam database...	0.69	0.74	0.63	26	13489	18	4	11	3	9
RFA_00604	Telomerase-cil links to Rfam database...	0.70	0.71	0.69	25	13494	22	2	9	11	10
RFA_00605	Telomerase-cil links to Rfam database...	0.33	0.34	0.32	12	15188	34	4	21	9	23
RFA_00607	Telomerase-cil links to Rfam database...	0.83	0.83	0.83	30	17730	18	4	2	12	6
RFA_00609	Telomerase-cil links to Rfam database...	0.75	0.76	0.74	28	17917	28	2	8	18	9
RFA_00610	Telomerase-cil links to Rfam database...	0.77	0.76	0.78	28	17169	23	2	6	15	9
RFA_00611	Telomerase-cil links to Rfam database...	0.87	0.86	0.88	30	13007	9	0	4	5	5
RFA_00613	Telomerase-cil links to Rfam database...	0.66	0.66	0.66	23	12845	14	4	8	2	12
RFA_00615	Telomerase-cil links to Rfam database...	0.63	0.66	0.61	23	13328	19	5	10	4	12
RFA_00632	HDV_ribozyme links to Rfam database...	0.88	0.89	0.86	25	4066	6	2	2	2	3
RFA_00636	HDV_ribozyme links to Rfam database...	0.95	0.96	0.93	27	3976	4	2	0	2	1
RFA_00642	Vimentin3 links to Rfam database...	-0.01	0.00	0.00	0	2910	16	3	13	0	18
RFA_00643	Vimentin3 links to Rfam database...	-0.01	0.00	0.00	0	2196	15	1	14	0	18
RFA_00644	Vimentin3 links to Rfam database...	-0.01	0.00	0.00	0	2677	24	4	20	0	18
RFA_00645	Vimentin3 links to Rfam database...	0.19	0.17	0.23	3	2402	11	1	9	1	15
RFA_00649	Vimentin3 links to Rfam database...	0.22	0.22	0.22	4	2127	16	0	14	2	14
RFA_00651	Vimentin3 links to Rfam database...	0.35	0.33	0.38	6	2064	10	1	9	0	12
RFA_00653	Vimentin3 links to Rfam database...	0.33	0.33	0.33	6	2127	12	3	9	0	12
RFA_00654	Vimentin3 links to Rfam database...	-0.01	0.00	0.00	0	2398	17	2	15	0	18
RFA_00658	Hammerhead_1 links to Rfam database...	0.33	0.29	0.40	4	1118	8	0	6	2	10
RFA_00659	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	1120	10	0	8	2	14
RFA_00664	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	980	11	0	10	1	14
RFA_00667	Hammerhead_1 links to Rfam database...	0.29	0.29	0.31	4	977	10	1	8	1	10
RFA_00668	Hammerhead_1 links to Rfam database...	0.41	0.43	0.40	6	975	9	0	9	0	8
RFA_00672	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	895	9	0	8	1	13
RFA_00673	Hammerhead_1 links to Rfam database...	0.42	0.36	0.50	5	1118	6	0	5	1	9
RFA_00674	Hammerhead_1 links to Rfam database...	0.74	0.71	0.77	10	1115	4	0	3	1	4
RFA_00675	Hammerhead_1 links to Rfam database...	0.29	0.29	0.31	4	977	9	1	8	0	10
RFA_00677	Hammerhead_1 links to Rfam database...	0.42	0.43	0.43	6	976	9	0	8	1	8
RFA_00678	Hammerhead_1 links to Rfam database...	0.33	0.29	0.40	4	936	6	0	6	0	10
RFA_00680	Hammerhead_1 links to Rfam database...	0.74	0.71	0.77	10	1115	6	0	3	3	4
RFA_00683	-	0.14	0.14	0.17	2	1023	10	0	10	0	12
RFA_00684	Hammerhead_1 links to Rfam database...	0.59	0.57	0.62	8	977	6	0	5	1	6
RFA_00685	Hammerhead_1 links to Rfam database...	0.42	0.36	0.50	5	980	6	0	5	1	9
RFA_00695	Hammerhead_1 links to Rfam database...	0.56	0.50	0.64	7	7010	29	1	3	25	7
RFA_00703	Hammerhead_1 links to Rfam database...	0.67	0.64	0.69	9	4265	18	1	3	14	5
RFA_00704	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	983	8	0	7	1	14
RFA_00705	Hammerhead_1 links to Rfam database...	0.74	0.71	0.77	10	1022	4	0	3	1	4
RFA_00706	Hammerhead_1 links to Rfam database...	0.33	0.29	0.40	4	1025	7	0	6	1	10
RFA_00707	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	1025	10	1	9	0	14
RFA_00708	Hammerhead_1 links to Rfam database...	0.35	0.29	0.44	4	1026	6	0	5	1	10
RFA_00709	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	979	12	0	11	1	14
RFA_00710	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	981	9	0	9	0	14
RFA_00711	Hammerhead_1 links to Rfam database...	0.33	0.29	0.40	4	1025	6	0	6	0	10
RFA_00715	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	936	10	0	10	0	14
RFA_00716	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	935	11	0	11	0	14
RFA_00717	Hammerhead_1 links to Rfam database...	0.66	0.64	0.69	9	890	4	0	4	0	5
RFA_00720	-	0.74	0.71	0.77	10	1163	3	0	3	0	4
RFA_00721	-	0.29	0.29	0.31	4	1163	9	0	9	0	10
RFA_00730	s2m links to Rfam database...	0.69	0.67	0.73	8	892	4	1	2	1	4
RFA_00731	s2m links to Rfam database...	0.69	0.67	0.73	8	892	4	1	2	1	4
RFA_00733	s2m links to Rfam database...	0.69	0.67	0.73	8	892	4	1	2	1	4
RFA_00734	s2m links to Rfam database...	0.18	0.17	0.22	2	894	8	0	7	1	10
RFA_00736	s2m links to Rfam database...	0.69	0.67	0.73	8	892	4	1	2	1	4
RFA_00737	s2m links to Rfam database...	1.00	1.00	1.00	12	891	1	0	0	1	0
RFA_00745	s2m links to Rfam database...	1.00	1.00	1.00	12	934	1	0	0	1	0
RFA_00749	s2m links to Rfam database...	0.69	0.67	0.73	8	892	4	1	2	1	4
RFA_00758	s2m links to Rfam database...	0.96	0.92	1.00	11	892	0	0	0	0	1
RFA_00762	s2m links to Rfam database...	0.64	0.67	0.62	8	890	5	1	4	0	4
RFA_00763	s2m links to Rfam database...	1.00	1.00	1.00	12	891	0	0	0	0	0
RFA_00764	s2m links to Rfam database...	0.69	0.67	0.73	8	892	4	1	2	1	4
RFA_00765	s2m links to Rfam database...	1.00	1.00	1.00	12	891	1	0	0	1	0
RFA_00767	Corona_pk3 links to Rfam database...	1.00	1.00	1.00	18	1873	3	0	0	3	0
RFA_00768	Corona_pk3 links to Rfam database...	1.00	1.00	1.00	18	1873	2	0	0	2	0
RFA_00769	Corona_pk3 links to Rfam database...	0.97	1.00	0.95	18	1934	3	1	0	2	0
RFA_00770	Corona_pk3 links to Rfam database...	0.88	0.78	1.00	14	2002	3	0	0	3	4
RFA_00773	Corona_pk3 links to Rfam database...	0.97	1.00	0.95	18	1934	4	1	0	3	0
RFA_00779	Corona_pk3 links to Rfam database...	0.97	0.94	1.00	17	1936	2	0	0	2	1
RFA_00781	Gammaretro_CES links to Rfam database...	0.58	0.59	0.58	19	5017	14	2	12	0	13
RFA_00786	Gammaretro_CES links to Rfam database...	0.71	0.72	0.70	23	5017	10	2	8	0	9
RFA_00791	Gammaretro_CES links to Rfam database...	0.50	0.50	0.50	16	5119	16	5	11	0	16
RFA_00792	Gammaretro_CES links to Rfam database...	0.88	0.91	0.85	29	5016	7	2	3	2	3
RFA_00801	Gammaretro_CES links to Rfam database...	0.81	0.81	0.81	26	5018	7	1	5	1	6
RFA_00808	RydC links to Rfam database...	1.00	1.00	1.00	16	2000	0	0	0	0	0
RFA_00809	RydC links to Rfam database...	0.79	0.81	0.76	13	2128	4	0	4	0	3
SPR_00007	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00009	tRNA links to Rfam database...	0.97	0.95	1.00	19	2831	0	0	0	0	1
SPR_00010	tRNA links to Rfam database...	0.47	0.48	0.48	10	2829	11	3	8	0	11
SPR_00012	tRNA links to Rfam database...	0.24	0.25	0.24	5	2829	16	2	14	0	15
SPR_00013	tRNA links to Rfam database...	0.97	0.95	1.00	19	2831	0	0	0	0	1
SPR_00016	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00017	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00020	tRNA links to Rfam database...	0.76	0.80	0.73	16	2679	8	2	4	2	4
SPR_00022	tRNA links to Rfam database...	0.31	0.33	0.29	7	2902	17	5	12	0	14
SPR_00023	tRNA links to Rfam database...	0.49	0.52	0.46	11	2826	13	3	10	0	10
SPR_00025	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	1	0	0	1	0
SPR_00026	tRNA links to Rfam database...	0.60	0.57	0.63	12	2907	8	0	7	1	9
SPR_00027	tRNA links to Rfam database...	0.38	0.38	0.38	8	2905	14	0	13	1	13
SPR_00029	tRNA links to Rfam database...	0.52	0.55	0.50	11	2606	11	5	6	0	9
SPR_00030	-	0.49	0.43	0.56	9	2469	7	0	7	0	12
SPR_00032	tRNA links to Rfam database...	0.95	0.95	0.95	20	2535	2	0	1	1	1
SPR_00033	tRNA links to Rfam database...	0.95	0.95	0.95	20	2607	1	0	1	0	1
SPR_00034	-	0.49	0.43	0.56	9	2469	8	2	5	1	12
SPR_00036	tRNA links to Rfam database...	0.84	0.80	0.89	16	2757	3	0	2	1	4
SPR_00044	tRNA links to Rfam database...	0.45	0.50	0.42	10	2826	14	4	10	0	10
SPR_00045	tRNA links to Rfam database...	0.79	0.77	0.81	17	2829	4	0	4	0	5
SPR_00060	tRNA links to Rfam database...	0.18	0.19	0.17	4	2752	19	5	14	0	17
SPR_00064	tRNA links to Rfam database...	0.54	0.57	0.52	12	2827	11	2	9	0	9
SPR_00065	tRNA links to Rfam database...	0.50	0.52	0.48	11	2827	12	4	8	0	10
SPR_00066	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00068	tRNA links to Rfam database...	0.55	0.52	0.58	11	2831	8	3	5	0	10
SPR_00070	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00074	tRNA links to Rfam database...	0.52	0.55	0.50	11	2828	12	2	9	1	9
SPR_00078	-	0.29	0.33	0.26	5	1872	14	4	10	0	10
SPR_00079	tRNA links to Rfam database...	1.00	1.00	1.00	19	2466	1	0	0	1	0
SPR_00080	tRNA links to Rfam database...	1.00	1.00	1.00	19	2396	0	0	0	0	0
SPR_00086	tRNA links to Rfam database...	0.30	0.33	0.28	7	2825	18	5	13	0	14
SPR_00087	tRNA links to Rfam database...	0.42	0.45	0.41	9	2828	13	4	9	0	11
SPR_00088	tRNA links to Rfam database...	0.42	0.45	0.41	9	2828	13	4	9	0	11
SPR_00089	tRNA links to Rfam database...	0.42	0.45	0.41	9	2828	13	4	9	0	11
SPR_00090	tRNA links to Rfam database...	0.18	0.20	0.17	4	2827	19	4	15	0	16
SPR_00091	tRNA links to Rfam database...	0.42	0.45	0.41	9	2828	13	4	9	0	11
SPR_00095	tRNA links to Rfam database...	0.52	0.52	0.52	11	2829	10	2	8	0	10
SPR_00111	tRNA links to Rfam database...	0.54	0.57	0.52	12	2678	11	1	10	0	9
SPR_00112	tRNA links to Rfam database...	0.78	0.76	0.80	16	2681	5	3	1	1	5
SPR_00113	tRNA links to Rfam database...	0.92	0.85	1.00	17	2758	1	0	0	1	3
SPR_00114	tRNA links to Rfam database...	1.00	1.00	1.00	21	2680	1	0	0	1	0
SPR_00115	tRNA links to Rfam database...	0.85	0.81	0.89	17	2682	2	0	2	0	4
SPR_00116	tRNA links to Rfam database...	1.00	1.00	1.00	21	2680	1	0	0	1	0
SPR_00117	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	1	0	0	1	0
SPR_00121	tRNA links to Rfam database...	0.98	0.95	1.00	20	2755	2	0	0	2	1
SPR_00124	tRNA links to Rfam database...	0.93	0.91	0.95	20	2535	2	0	1	1	2
SPR_00126	-	0.63	0.60	0.67	12	2062	7	2	4	1	8
SPR_00127	-	0.30	0.33	0.29	6	2394	17	4	11	2	12
SPR_00137	tRNA links to Rfam database...	0.56	0.62	0.52	13	2901	15	4	8	3	8
SPR_00138	tRNA links to Rfam database...	0.74	0.80	0.70	16	2903	9	0	7	2	4
SPR_00139	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	1	0	0	1	0
SPR_00141	tRNA links to Rfam database...	0.53	0.55	0.52	11	2754	11	2	8	1	9
SPR_00142	-	0.36	0.37	0.37	7	2609	14	1	11	2	12
SPR_00153	tRNA links to Rfam database...	0.62	0.62	0.62	13	2905	8	3	5	0	8
SPR_00155	tRNA links to Rfam database...	0.49	0.52	0.46	11	2902	13	3	10	0	10
SPR_00156	tRNA links to Rfam database...	0.48	0.52	0.44	11	2901	14	5	9	0	10
SPR_00163	tRNA links to Rfam database...	0.90	0.81	1.00	17	2833	1	0	0	1	4
SPR_00164	tRNA links to Rfam database...	0.25	0.24	0.28	5	2908	13	0	13	0	16
SPR_00166	-	0.43	0.47	0.39	9	2533	14	3	11	0	10
SPR_00167	tRNA links to Rfam database...	1.00	1.00	1.00	20	2536	1	0	0	1	0
SPR_00176	tRNA links to Rfam database...	0.51	0.55	0.48	11	2827	13	2	10	1	9
SPR_00177	tRNA links to Rfam database...	0.51	0.57	0.46	12	2824	14	2	12	0	9
SPR_00178	tRNA links to Rfam database...	0.70	0.71	0.68	15	2828	7	3	4	0	6
SPR_00183	-	0.63	0.55	0.73	11	2835	4	0	4	0	9
SPR_00191	tRNA links to Rfam database...	0.18	0.19	0.19	4	2829	17	4	13	0	17
SPR_00200	tRNA links to Rfam database...	0.53	0.52	0.55	11	2830	10	3	6	1	10
SPR_00209	tRNA links to Rfam database...	0.35	0.37	0.33	7	3549	16	5	9	2	12
SPR_00213	tRNA links to Rfam database...	0.55	0.62	0.50	13	3802	13	6	7	0	8
SPR_00215	tRNA links to Rfam database...	0.51	0.55	0.48	11	3547	16	5	7	4	9
SPR_00218	tRNA links to Rfam database...	0.51	0.60	0.44	12	3714	17	8	7	2	8
SPR_00219	tRNA links to Rfam database...	0.56	0.60	0.52	12	3718	17	4	7	6	8
SPR_00220	tRNA links to Rfam database...	0.24	0.25	0.24	5	3720	20	4	12	4	15
SPR_00221	tRNA links to Rfam database...	0.31	0.33	0.29	7	3717	21	4	13	4	14
SPR_00223	tRNA links to Rfam database...	0.47	0.50	0.45	10	3548	16	2	10	4	10
SPR_00224	tRNA links to Rfam database...	0.47	0.50	0.45	10	3719	17	5	7	5	10
SPR_00225	tRNA links to Rfam database...	0.72	0.86	0.60	18	3711	12	7	5	0	3
SPR_00226	tRNA links to Rfam database...	0.78	0.86	0.72	18	3630	7	6	1	0	3
SPR_00227	tRNA links to Rfam database...	0.25	0.29	0.23	6	3460	23	5	15	3	15
SPR_00228	tRNA links to Rfam database...	0.46	0.50	0.43	10	3805	15	5	8	2	10
SPR_00229	tRNA links to Rfam database...	0.81	0.81	0.81	17	3382	5	2	2	1	4
SPR_00230	tRNA links to Rfam database...	0.27	0.29	0.27	6	3548	16	6	10	0	15
SPR_00235	tRNA links to Rfam database...	0.51	0.62	0.43	13	3711	17	10	7	0	8
SPR_00236	tRNA links to Rfam database...	0.56	0.60	0.52	12	3547	14	5	6	3	8
SPR_00246	tRNA links to Rfam database...	0.55	0.55	0.55	11	2681	11	0	9	2	9
SPR_00263	tRNA links to Rfam database...	0.28	0.33	0.25	7	3542	24	8	13	3	14
SPR_00271	tRNA links to Rfam database...	0.52	0.57	0.48	12	2825	13	3	10	0	9
SPR_00273	tRNA links to Rfam database...	0.30	0.33	0.28	7	2825	19	2	16	1	14
SPR_00276	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00277	tRNA links to Rfam database...	0.98	0.95	1.00	20	2906	0	0	0	0	1
SPR_00279	tRNA links to Rfam database...	0.36	0.33	0.39	7	2908	11	6	5	0	14
SPR_00281	-	0.37	0.41	0.35	7	1996	13	3	10	0	10
SPR_00289	tRNA links to Rfam database...	0.73	0.75	0.71	15	2905	8	2	4	2	5
SPR_00294	tRNA links to Rfam database...	0.55	0.57	0.55	12	2828	10	3	7	0	9
SPR_00295	tRNA links to Rfam database...	0.55	0.57	0.55	12	2753	11	3	7	1	9
SPR_00297	tRNA links to Rfam database...	0.60	0.57	0.63	12	2756	7	1	6	0	9
SPR_00298	tRNA links to Rfam database...	0.60	0.60	0.60	12	2755	8	0	8	0	8
SPR_00309	tRNA links to Rfam database...	0.66	0.67	0.67	14	2905	8	2	5	1	7
SPR_00314	tRNA links to Rfam database...	0.68	0.71	0.65	15	2903	11	0	8	3	6
SPR_00315	tRNA links to Rfam database...	0.74	0.81	0.68	17	2901	10	0	8	2	4
SPR_00316	tRNA links to Rfam database...	0.98	0.95	1.00	20	2906	4	0	0	4	1
SPR_00317	tRNA links to Rfam database...	0.53	0.60	0.48	12	2901	13	7	6	0	8
SPR_00318	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	4	0	0	4	0
SPR_00320	tRNA links to Rfam database...	0.16	0.16	0.18	3	2758	14	6	8	0	16
SPR_00321	tRNA links to Rfam database...	0.68	0.67	0.70	14	2983	6	4	2	0	7
SPR_00327	tRNA links to Rfam database...	0.46	0.48	0.45	10	2981	12	2	10	0	11
SPR_00329	tRNA links to Rfam database...	0.59	0.62	0.57	13	2827	11	3	7	1	8
SPR_00331	tRNA links to Rfam database...	0.46	0.50	0.43	10	2752	13	5	8	0	10
SPR_00333	tRNA links to Rfam database...	0.45	0.48	0.43	10	2752	13	5	8	0	11
SPR_00339	tRNA links to Rfam database...	0.48	0.52	0.44	11	2750	14	5	9	0	10
SPR_00352	tRNA links to Rfam database...	0.74	0.76	0.73	16	2904	6	3	3	0	5
SPR_00353	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00356	tRNA links to Rfam database...	0.95	0.95	0.95	20	2754	1	0	1	0	1
SPR_00357	tRNA links to Rfam database...	0.98	0.95	1.00	20	2906	0	0	0	0	1
SPR_00358	tRNA links to Rfam database...	0.31	0.35	0.29	7	2902	17	5	12	0	13
SPR_00359	tRNA links to Rfam database...	0.62	0.59	0.65	13	2906	8	0	7	1	9
SPR_00360	tRNA links to Rfam database...	0.32	0.32	0.33	7	2680	14	3	11	0	15
SPR_00362	-	1.00	1.00	1.00	13	1418	5	0	0	5	0
SPR_00363	-	-0.01	0.00	0.00	0	1582	14	3	11	0	15
SPR_00364	-	0.52	0.55	0.50	11	2189	11	3	8	0	9
SPR_00365	-	0.60	0.59	0.62	13	2535	8	1	7	0	9
SPR_00366	-	0.56	0.50	0.63	10	2540	6	1	5	0	10
SPR_00367	-	0.78	0.73	0.84	16	2466	3	0	3	0	6
SPR_00369	tRNA links to Rfam database...	0.31	0.33	0.29	7	2751	17	3	14	0	14
SPR_00370	tRNA links to Rfam database...	0.23	0.24	0.23	5	2753	17	3	14	0	16
SPR_00373	tRNA links to Rfam database...	0.30	0.33	0.28	7	2825	18	7	11	0	14
SPR_00374	tRNA links to Rfam database...	0.31	0.33	0.29	7	2826	17	6	11	0	14
SPR_00385	tRNA links to Rfam database...	0.53	0.55	0.52	11	4257	15	3	7	5	9
SPR_00386	tRNA links to Rfam database...	0.50	0.50	0.50	10	4166	16	5	5	6	10
SPR_00388	tRNA links to Rfam database...	0.56	0.57	0.55	12	4164	16	2	8	6	9
SPR_00389	tRNA links to Rfam database...	0.83	0.85	0.81	17	3984	10	1	3	6	3
SPR_00390	tRNA links to Rfam database...	0.84	0.86	0.82	18	4256	10	1	3	6	3
SPR_00391	tRNA links to Rfam database...	0.56	0.57	0.55	12	3806	15	1	9	5	9
SPR_00393	tRNA links to Rfam database...	0.32	0.35	0.29	7	3804	22	7	10	5	13
SPR_00394	tRNA links to Rfam database...	0.30	0.33	0.28	7	3630	20	8	10	2	14
SPR_00395	tRNA links to Rfam database...	0.47	0.52	0.42	11	3979	16	7	8	1	10
SPR_00398	-	-0.01	0.00	0.00	0	2193	20	2	16	2	13
SPR_00399	-	0.65	0.75	0.57	12	2464	10	6	3	1	4
SPR_00402	tRNA links to Rfam database...	0.67	0.62	0.72	13	2538	5	0	5	0	8
SPR_00412	tRNA links to Rfam database...	0.28	0.33	0.25	7	3627	21	4	17	0	14
SPR_00414	tRNA links to Rfam database...	0.44	0.48	0.42	10	3546	18	5	9	4	11
SPR_00415	tRNA links to Rfam database...	0.76	0.81	0.71	17	3546	7	5	2	0	4
SPR_00416	tRNA links to Rfam database...	-0.01	0.00	0.00	0	3548	26	2	20	4	21
SPR_00417	tRNA links to Rfam database...	0.29	0.32	0.28	7	3545	22	7	11	4	15
SPR_00418	tRNA links to Rfam database...	0.29	0.32	0.28	7	3545	22	7	11	4	15
SPR_00426	tRNA links to Rfam database...	1.00	1.00	1.00	21	2982	4	0	0	4	0
SPR_00434	tRNA links to Rfam database...	0.27	0.29	0.27	6	2828	16	7	9	0	15
SPR_00435	tRNA links to Rfam database...	0.65	0.67	0.64	14	2828	8	0	8	0	7
SPR_00436	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	1	0	0	1	1
SPR_00437	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	1	0	0	1	0
SPR_00438	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	0	0	0	0	0
SPR_00439	tRNA links to Rfam database...	0.23	0.25	0.22	5	2678	18	6	12	0	15
SPR_00445	tRNA links to Rfam database...	0.53	0.60	0.48	12	2978	13	3	10	0	8
SPR_00452	tRNA links to Rfam database...	0.73	0.76	0.70	16	2827	7	3	4	0	5
SPR_00455	tRNA links to Rfam database...	0.28	0.29	0.29	6	2829	15	5	10	0	15
SPR_00456	tRNA links to Rfam database...	0.29	0.33	0.27	7	2824	19	2	17	0	14
SPR_00458	tRNA links to Rfam database...	0.95	0.95	0.95	19	2830	1	0	1	0	1
SPR_00459	tRNA links to Rfam database...	0.35	0.35	0.35	7	2755	13	6	7	0	13
SPR_00461	tRNA links to Rfam database...	0.47	0.47	0.47	9	2537	11	1	9	1	10
SPR_00462	tRNA links to Rfam database...	0.65	0.58	0.73	11	2400	4	1	3	0	8
SPR_00467	tRNA links to Rfam database...	0.31	0.35	0.29	7	2826	17	6	11	0	13
SPR_00476	tRNA links to Rfam database...	0.52	0.57	0.48	12	2750	13	3	10	0	9
SPR_00478	tRNA links to Rfam database...	0.58	0.57	0.60	12	2755	9	0	8	1	9
SPR_00479	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00481	tRNA links to Rfam database...	0.36	0.33	0.39	7	2757	12	3	8	1	14
SPR_00482	tRNA links to Rfam database...	0.98	0.95	1.00	20	2681	0	0	0	0	1
SPR_00483	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00487	tRNA links to Rfam database...	-0.01	0.00	0.00	0	2683	18	0	18	0	22
SPR_00489	tRNA links to Rfam database...	0.48	0.48	0.50	10	2681	10	4	6	0	11
SPR_00493	tRNA links to Rfam database...	0.30	0.32	0.29	7	2751	17	5	12	0	15
SPR_00496	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	0	0	0	0	0
SPR_00497	tRNA links to Rfam database...	0.52	0.57	0.48	12	2750	13	3	10	0	9
SPR_00498	tRNA links to Rfam database...	0.53	0.60	0.48	12	2978	13	6	7	0	8
SPR_00502	tRNA links to Rfam database...	0.56	0.57	0.55	12	2904	10	2	8	0	9
SPR_00504	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	0	0	0	0	0
SPR_00505	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	2	0	0	2	0
SPR_00506	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00509	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	2	0	0	2	0
SPR_00512	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	2	0	0	2	0
SPR_00513	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00517	tRNA links to Rfam database...	0.41	0.45	0.38	9	2826	15	5	10	0	11
SPR_00518	tRNA links to Rfam database...	0.56	0.55	0.58	11	2907	8	1	7	0	9
SPR_00519	tRNA links to Rfam database...	0.80	0.76	0.84	16	2537	4	0	3	1	5
SPR_00520	tRNA links to Rfam database...	0.58	0.61	0.55	11	2536	9	3	6	0	7
SPR_00533	tRNA links to Rfam database...	0.78	0.76	0.80	16	2755	4	3	1	0	5
SPR_00541	tRNA links to Rfam database...	0.49	0.52	0.46	11	3462	15	0	13	2	10
SPR_00542	tRNA links to Rfam database...	0.30	0.33	0.28	7	3545	21	2	16	3	14
SPR_00544	tRNA links to Rfam database...	0.67	0.70	0.64	14	3548	9	1	7	1	6
SPR_00548	tRNA links to Rfam database...	0.53	0.57	0.50	12	3379	12	0	12	0	9
SPR_00550	tRNA links to Rfam database...	0.32	0.32	0.33	7	3807	17	0	14	3	15
SPR_00552	tRNA links to Rfam database...	0.21	0.21	0.22	4	2683	14	2	12	0	15
SPR_00557	tRNA links to Rfam database...	0.40	0.43	0.39	9	2827	14	1	13	0	12
SPR_00561	tRNA links to Rfam database...	0.40	0.43	0.39	9	2827	14	1	13	0	12
SPR_00590	tRNA links to Rfam database...	0.33	0.35	0.32	7	2981	15	3	12	0	13
SPR_00593	tRNA links to Rfam database...	0.51	0.53	0.50	10	2755	10	4	6	0	9
SPR_00595	tRNA links to Rfam database...	0.55	0.57	0.55	12	2753	10	2	8	0	9
SPR_00598	tRNA links to Rfam database...	0.54	0.57	0.52	12	2980	12	2	9	1	9
SPR_00610	tRNA links to Rfam database...	0.87	0.81	0.94	17	2538	2	0	1	1	4
SPR_00620	tRNA links to Rfam database...	0.52	0.57	0.48	12	2978	14	5	8	1	9
SPR_00629	-	0.62	0.67	0.59	10	1874	9	1	6	2	5
SPR_00632	tRNA links to Rfam database...	0.92	0.85	1.00	17	2539	0	0	0	0	3
SPR_00633	tRNA links to Rfam database...	0.31	0.35	0.29	7	2532	17	7	10	0	13
SPR_00721	tRNA links to Rfam database...	0.38	0.43	0.35	9	2900	19	3	14	2	12
SPR_00722	tRNA links to Rfam database...	0.76	0.80	0.73	16	2904	6	4	2	0	4
SPR_00750	tRNA links to Rfam database...	0.89	0.79	1.00	15	2541	1	0	0	1	4
SPR_00758	tRNA links to Rfam database...	0.29	0.33	0.27	7	2977	20	7	12	1	14
SPR_00760	tRNA links to Rfam database...	0.39	0.43	0.36	9	3545	16	1	15	0	12
SPR_00768	-	0.34	0.39	0.30	7	2057	16	6	10	0	11
SPR_00777	tRNA links to Rfam database...	0.51	0.55	0.48	11	2605	12	5	7	0	9
SPR_00810	tRNA links to Rfam database...	0.55	0.63	0.48	12	3545	17	4	9	4	7
SPR_00816	tRNA links to Rfam database...	0.32	0.35	0.29	7	3462	20	5	12	3	13
SPR_00832	-	0.64	0.67	0.63	10	1637	6	2	4	0	5
SPR_00867	tRNA links to Rfam database...	0.49	0.52	0.46	11	2902	15	4	9	2	10
SPR_00868	tRNA links to Rfam database...	0.83	0.81	0.85	17	2906	4	0	3	1	4
SPR_00882	tRNA links to Rfam database...	0.92	0.85	1.00	17	2611	0	0	0	0	3
SPR_00912	tRNA links to Rfam database...	0.40	0.43	0.38	9	2979	18	3	12	3	12
SPR_00913	tRNA links to Rfam database...	0.31	0.33	0.30	7	2980	16	4	12	0	14
SPR_00932	tRNA links to Rfam database...	0.85	0.81	0.89	17	2831	3	0	2	1	4
SPR_00938	-	-0.01	0.00	0.00	0	1636	17	4	13	0	15
SPR_00943	tRNA links to Rfam database...	0.83	0.85	0.81	17	2535	4	1	3	0	3
SPR_00957	tRNA links to Rfam database...	0.78	0.76	0.80	16	2983	5	0	4	1	5
SPR_01040	tRNA links to Rfam database...	0.83	0.81	0.85	17	2755	4	0	3	1	4
SPR_01051	tRNA links to Rfam database...	0.70	0.71	0.68	15	2534	7	1	6	0	6
SPR_01088	tRNA links to Rfam database...	0.52	0.52	0.52	11	2905	12	2	8	2	10
SPR_01095	tRNA links to Rfam database...	0.39	0.43	0.36	9	2825	16	3	13	0	12
SPR_01103	-	0.97	0.93	1.00	14	1756	1	0	0	1	1
SPR_01106	tRNA links to Rfam database...	0.98	0.95	1.00	20	2536	1	0	0	1	1
SPR_01117	tRNA links to Rfam database...	1.00	1.00	1.00	21	2982	1	0	0	1	0
SPR_01143	tRNA links to Rfam database...	0.32	0.33	0.32	7	2534	15	3	12	0	14
SPR_01157	tRNA links to Rfam database...	0.73	0.76	0.70	16	2752	8	0	7	1	5
SRP_00001	Bacteria_large_SRP links to Rfam database...	0.84	0.85	0.83	34	6745	9	1	6	2	6
SRP_00005	-	0.86	0.88	0.84	21	3980	6	0	4	2	3
SRP_00007	-	0.77	0.73	0.80	33	11894	12	1	7	4	12
SRP_00008	Bacteria_small_SRP links to Rfam database...	1.00	1.00	1.00	25	2901	0	0	0	0	0
SRP_00020	Bacteria_small_SRP links to Rfam database...	0.89	0.91	0.88	30	5531	4	1	3	0	3
SRP_00038	Bacteria_small_SRP links to Rfam database...	0.94	0.94	0.94	31	5017	2	0	2	0	2
SRP_00040	Bacteria_small_SRP links to Rfam database...	0.70	0.74	0.66	23	5530	14	1	11	2	8
SRP_00042	Bacteria_small_SRP links to Rfam database...	0.41	0.44	0.39	11	3977	19	0	17	2	14
SRP_00043	Bacteria_small_SRP links to Rfam database...	0.45	0.48	0.42	14	5017	22	4	15	3	15
SRP_00044	Bacteria_small_SRP links to Rfam database...	0.74	0.72	0.77	23	6075	10	1	6	3	9
SRP_00045	-	0.67	0.70	0.65	31	11887	18	2	15	1	13
SRP_00046	Bacteria_small_SRP links to Rfam database...	0.97	0.97	0.97	31	4721	2	0	1	1	1
SRP_00051	Bacteria_small_SRP links to Rfam database...	0.97	0.97	0.97	29	5430	3	0	1	2	1
SRP_00054	Bacteria_small_SRP links to Rfam database...	0.45	0.44	0.47	14	5535	16	0	16	0	18
SRP_00056	Bacteria_small_SRP links to Rfam database...	0.81	0.81	0.81	30	6404	7	1	6	0	7
SRP_00057	Bacteria_small_SRP links to Rfam database...	0.83	0.83	0.83	29	6293	7	1	5	1	6
SRP_00058	Bacteria_small_SRP links to Rfam database...	0.87	0.88	0.86	30	5743	9	1	4	4	4
SRP_00067	Bacteria_small_SRP links to Rfam database...	0.93	0.95	0.92	36	5739	3	1	2	0	2
SRP_00072	Bacteria_small_SRP links to Rfam database...	1.00	1.00	1.00	29	6299	1	0	0	1	0
SRP_00074	Bacteria_small_SRP links to Rfam database...	0.39	0.41	0.36	12	6522	25	3	18	4	17
SRP_00075	Bacteria_small_SRP links to Rfam database...	0.88	0.88	0.88	30	5531	7	0	4	3	4
SRP_00077	Bacteria_small_SRP links to Rfam database...	0.21	0.22	0.21	8	6631	31	4	27	0	29
SRP_00081	Bacteria_small_SRP links to Rfam database...	0.57	0.61	0.54	19	5530	16	1	15	0	12
SRP_00083	-	0.45	0.43	0.48	13	4824	14	0	14	0	17
SRP_00084	Bacteria_small_SRP links to Rfam database...	0.88	0.88	0.88	30	5426	4	1	3	0	4
SRP_00093	-	0.30	0.36	0.25	9	14160	44	11	16	17	16
SRP_00094	Bacteria_small_SRP links to Rfam database...	0.86	0.88	0.84	21	4070	4	0	4	0	3
SRP_00095	Bacteria_small_SRP links to Rfam database...	0.85	0.88	0.81	22	3978	5	1	4	0	3
SRP_00098	Bacteria_small_SRP links to Rfam database...	0.68	0.70	0.67	26	6402	16	1	12	3	11
SRP_00101	-	0.78	0.80	0.77	20	3544	9	0	6	3	5
SRP_00105	Bacteria_small_SRP links to Rfam database...	0.38	0.38	0.39	13	5532	20	3	17	0	21
SRP_00106	Bacteria_large_SRP links to Rfam database...	0.45	0.52	0.39	13	5220	23	9	11	3	12
SRP_00107	Bacteria_small_SRP links to Rfam database...	0.13	0.16	0.11	3	3628	26	6	18	2	16
SRP_00119	-	0.85	0.84	0.86	43	12991	10	0	7	3	8
SRP_00121	Bacteria_small_SRP links to Rfam database...	0.80	0.80	0.80	20	4253	6	0	5	1	5
SRP_00128	Bacteria_small_SRP links to Rfam database...	0.74	0.78	0.70	28	6746	12	1	11	0	8
SRP_00132	Bacteria_small_SRP links to Rfam database...	0.69	0.72	0.66	21	4819	14	0	11	3	8
SRP_00134	Bacteria_large_SRP links to Rfam database...	0.51	0.55	0.48	16	5962	23	3	14	6	13
SRP_00135	-	0.98	0.96	1.00	49	14316	3	0	0	3	2
SRP_00137	Bacteria_small_SRP links to Rfam database...	0.74	0.84	0.66	21	4154	13	4	7	2	4
SRP_00138	-	1.00	1.00	1.00	27	3978	6	0	0	6	0
SRP_00139	-	-0.01	0.00	0.00	0	2129	16	4	12	0	12
SRP_00140	-	0.82	0.82	0.82	32	8476	17	2	5	10	7
SRP_00141	Bacteria_small_SRP links to Rfam database...	0.89	0.88	0.90	36	6288	4	1	3	0	5
SRP_00145	Bacteria_small_SRP links to Rfam database...	0.94	0.95	0.93	38	6287	3	1	2	0	2
SRP_00146	Bacteria_small_SRP links to Rfam database...	0.93	0.94	0.92	34	5216	3	1	2	0	2
SRP_00161	Bacteria_small_SRP links to Rfam database...	0.86	0.86	0.86	19	2828	3	0	3	0	3
SRP_00162	Bacteria_small_SRP links to Rfam database...	0.89	0.91	0.88	21	2902	4	0	3	1	2
SRP_00163	Bacteria_small_SRP links to Rfam database...	0.76	0.81	0.72	21	3457	8	2	6	0	5
SRP_00164	Bacteria_small_SRP links to Rfam database...	0.82	0.83	0.81	29	6867	7	1	6	0	6
SRP_00170	Bacteria_small_SRP links to Rfam database...	0.55	0.56	0.54	14	4069	13	0	12	1	11
SRP_00193	-	0.65	0.64	0.66	23	6868	13	1	11	1	13
SRP_00194	Bacteria_small_SRP links to Rfam database...	0.77	0.81	0.74	17	3217	6	0	6	0	4
SRP_00196	-	0.41	0.43	0.40	12	4626	22	1	17	4	16
SRP_00200	Bacteria_small_SRP links to Rfam database...	0.71	0.72	0.70	26	6866	13	1	10	2	10
SRP_00209	Bacteria_small_SRP links to Rfam database...	0.68	0.70	0.66	19	4627	10	1	9	0	8
SRP_00213	Bacteria_small_SRP links to Rfam database...	0.37	0.40	0.36	10	4158	18	3	15	0	15
SRP_00214	-	0.90	0.92	0.88	22	3056	4	0	3	1	2
SRP_00215	Bacteria_small_SRP links to Rfam database...	0.82	0.80	0.83	20	3216	4	0	4	0	5
SRP_00216	Bacteria_small_SRP links to Rfam database...	0.95	0.96	0.93	26	3375	3	1	1	1	1
SRP_00217	Bacteria_small_SRP links to Rfam database...	0.94	0.96	0.92	23	3296	3	0	2	1	1
SRP_00219	Bacteria_small_SRP links to Rfam database...	0.94	0.96	0.92	22	3297	3	0	2	1	1
SRP_00221	-	0.77	0.81	0.74	17	3380	7	1	5	1	4
SRP_00222	Bacteria_small_SRP links to Rfam database...	0.94	0.96	0.92	24	3055	3	1	1	1	1
SRP_00223	-	0.93	0.95	0.90	19	3382	3	0	2	1	1
SRP_00227	Bacteria_small_SRP links to Rfam database...	0.92	0.94	0.91	29	5119	3	1	2	0	2
SRP_00229	Bacteria_small_SRP links to Rfam database...	0.43	0.44	0.41	12	5224	17	5	12	0	15
SRP_00231	Bacteria_small_SRP links to Rfam database...	0.90	0.91	0.89	31	5425	4	1	3	0	3
SRP_00233	Bacteria_small_SRP links to Rfam database...	0.97	0.94	1.00	31	5120	0	0	0	0	2
SRP_00235	-	1.00	1.00	1.00	33	5017	4	0	0	4	0
SRP_00243	Bacteria_small_SRP links to Rfam database...	0.97	0.94	1.00	29	5122	1	0	0	1	2
SRP_00244	Bacteria_small_SRP links to Rfam database...	0.89	0.87	0.92	34	6866	4	1	2	1	5
SRP_00245	-	0.50	0.55	0.46	12	13015	43	8	6	29	10
SRP_00250	Bacteria_small_SRP links to Rfam database...	0.72	0.72	0.72	26	6750	12	1	9	2	10
SRP_00251	Bacteria_small_SRP links to Rfam database...	0.68	0.69	0.68	25	6984	12	1	11	0	11
SRP_00256	-	0.49	0.50	0.48	11	4255	13	3	9	1	11
SRP_00266	Bacteria_small_SRP links to Rfam database...	0.72	0.72	0.72	21	4627	9	1	7	1	8
SRP_00268	Bacteria_small_SRP links to Rfam database...	0.93	0.93	0.93	25	4159	2	1	1	0	2
SRP_00269	Bacteria_small_SRP links to Rfam database...	0.53	0.55	0.53	18	5016	16	3	13	0	15
SRP_00270	Bacteria_small_SRP links to Rfam database...	0.43	0.45	0.41	14	4622	20	2	18	0	17
SRP_00271	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	3215	25	3	22	0	24
SRP_00273	Bacteria_small_SRP links to Rfam database...	0.79	0.80	0.78	32	6745	10	1	8	1	8
SRP_00274	Bacteria_small_SRP links to Rfam database...	0.83	0.84	0.82	32	6864	7	1	6	0	6
SRP_00284	-	0.93	0.90	0.96	26	3714	1	0	1	0	3
SRP_00285	Bacteria_small_SRP links to Rfam database...	0.98	0.97	1.00	29	3712	0	0	0	0	1
SRP_00295	Bacteria_small_SRP links to Rfam database...	0.91	0.89	0.92	34	6866	4	1	2	1	4
SRP_00303	Bacteria_small_SRP links to Rfam database...	0.69	0.72	0.66	23	6635	12	1	11	0	9
SRP_00307	-	0.27	0.28	0.27	12	12835	33	6	27	0	31
SRP_00310	Bacteria_small_SRP links to Rfam database...	0.87	0.87	0.87	20	2903	4	0	3	1	3
SRP_00312	Bacteria_small_SRP links to Rfam database...	0.32	0.33	0.31	9	4157	20	3	17	0	18
SRP_00315	Bacteria_small_SRP links to Rfam database...	0.87	0.87	0.87	20	2903	3	0	3	0	3
SRP_00318	Bacteria_small_SRP links to Rfam database...	0.87	0.87	0.87	20	2980	3	0	3	0	3
SRP_00324	Bacteria_small_SRP links to Rfam database...	0.57	0.62	0.53	18	5322	16	5	11	0	11
SRP_00325	Bacteria_small_SRP links to Rfam database...	1.00	1.00	1.00	33	4338	0	0	0	0	0
SRP_00326	Bacteria_small_SRP links to Rfam database...	0.55	0.55	0.57	17	5020	13	3	10	0	14
SRP_00333	Bacteria_small_SRP links to Rfam database...	0.86	0.85	0.88	29	5118	4	0	4	0	5
SRP_00338	Bacteria_small_SRP links to Rfam database...	0.94	0.94	0.94	34	5424	2	0	2	0	2
SRP_00341	Bacteria_small_SRP links to Rfam database...	0.77	0.77	0.77	24	4722	7	0	7	0	7
SRP_00342	Bacteria_small_SRP links to Rfam database...	0.59	0.60	0.58	15	3979	16	1	10	5	10
SRP_00350	Bacteria_small_SRP links to Rfam database...	0.34	0.33	0.35	9	3890	17	2	15	0	18
SRP_00356	Bacteria_small_SRP links to Rfam database...	0.65	0.67	0.65	20	5019	11	2	9	0	10
SRP_00357	Bacteria_small_SRP links to Rfam database...	0.90	0.89	0.91	32	5321	3	1	2	0	4
SRP_00358	Bacteria_small_SRP links to Rfam database...	0.90	0.89	0.91	31	6294	3	1	2	0	4
SRP_00363	Bacteria_small_SRP links to Rfam database...	0.95	0.97	0.94	29	4722	4	0	2	2	1
SRP_00365	Bacteria_small_SRP links to Rfam database...	0.94	0.93	0.96	25	3377	1	0	1	0	2
SRP_00367	Bacteria_small_SRP links to Rfam database...	0.93	0.94	0.92	33	6750	3	1	2	0	2
SRP_00369	Bacteria_small_SRP links to Rfam database...	0.81	0.80	0.82	28	5744	8	1	5	2	7
SRP_00383	Bacteria_small_SRP links to Rfam database...	0.24	0.25	0.24	6	3215	19	4	15	0	18
TMR_00272	-	1.00	1.00	1.00	31	5120	0	0	0	0	0

^top

Performance of RNAwolf - scored lower in this pairwise comparison

1. Total counts & total scores for RNAwolf

Total Base Pair Counts
Total TP	10233
Total TN	2890315
Total FP	11835
Total FP CONTRA	1397
Total FP INCONS	8050
Total FP COMP	2388
Total FN	9315

Total Scores
MCC	0.518
Average MCC ± 95% Confidence Intervals	0.553 ± 0.022
Sensitivity	0.523
Positive Predictive Value	0.520
Nr of predictions	882

^top

2. Individual counts for RNAwolf [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00051	-	0.19	0.22	0.17	9	19058	58	8	35	15	32
ASE_00251	RNaseP_nuc links to Rfam database...	0.78	0.79	0.77	34	17722	33	0	10	23	9
CRW_00548	5S_rRNA links to Rfam database...	-0.01	0.00	0.00	0	7337	44	8	36	0	38
CRW_00552	5S_rRNA links to Rfam database...	0.25	0.26	0.24	10	7099	32	5	26	1	29
CRW_00555	5S_rRNA links to Rfam database...	0.38	0.38	0.38	15	7587	30	0	24	6	25
CRW_00567	5S_rRNA links to Rfam database...	0.23	0.25	0.23	10	7459	37	3	31	3	30
CRW_00570	5S_rRNA links to Rfam database...	0.81	0.81	0.81	30	6866	16	0	7	9	7
CRW_00573	5S_rRNA links to Rfam database...	0.35	0.35	0.35	14	7100	31	2	24	5	26
CRW_01482	5S_rRNA links to Rfam database...	0.86	0.85	0.87	40	8732	13	0	6	7	7
CRW_01484	5S_rRNA links to Rfam database...	0.08	0.08	0.09	3	7469	33	1	30	2	36
CRW_01485	5S_rRNA links to Rfam database...	0.49	0.49	0.50	19	7465	25	3	16	6	20
CRW_01487	5S_rRNA links to Rfam database...	0.17	0.17	0.17	7	7462	34	4	30	0	34
CRW_01489	5S_rRNA links to Rfam database...	0.77	0.72	0.82	28	7469	14	0	6	8	11
CRW_01491	5S_rRNA links to Rfam database...	0.18	0.19	0.19	8	8343	35	3	31	1	35
CRW_01492	5S_rRNA links to Rfam database...	0.76	0.74	0.78	31	7586	14	0	9	5	11
CRW_01493	5S_rRNA links to Rfam database...	0.59	0.53	0.66	23	7840	16	0	12	4	20
CRW_01494	5S_rRNA links to Rfam database...	0.67	0.65	0.70	26	7103	19	0	11	8	14
CRW_01496	5S_rRNA links to Rfam database...	0.52	0.48	0.57	21	8091	22	0	16	6	23
CRW_01497	5S_rRNA links to Rfam database...	0.74	0.70	0.78	28	7104	13	0	8	5	12
CRW_01498	5S_rRNA links to Rfam database...	0.89	0.88	0.90	38	8086	12	0	4	8	5
CRW_01499	5S_rRNA links to Rfam database...	0.56	0.54	0.59	22	7964	21	0	15	6	19
CRW_01500	5S_rRNA links to Rfam database...	0.15	0.16	0.14	6	7708	37	7	29	1	32
CRW_01501	5S_rRNA links to Rfam database...	0.64	0.62	0.67	28	8473	21	0	14	7	17
CRW_01502	5S_rRNA links to Rfam database...	0.44	0.48	0.42	22	8332	33	6	25	2	24
CRW_01504	5S_rRNA links to Rfam database...	0.82	0.79	0.85	34	7835	15	0	6	9	9
CRW_01507	5S_rRNA links to Rfam database...	0.39	0.37	0.43	15	7468	24	1	19	4	26
CRW_01508	5S_rRNA links to Rfam database...	0.52	0.52	0.52	22	7959	22	5	15	2	20
CRW_01521	5S_rRNA links to Rfam database...	0.67	0.67	0.69	24	6868	20	0	11	9	12
CRW_01532	5S_rRNA links to Rfam database...	0.21	0.22	0.22	8	7103	30	3	26	1	29
CRW_01533	5S_rRNA links to Rfam database...	0.23	0.24	0.23	9	7101	30	6	24	0	28
CRW_01534	5S_rRNA links to Rfam database...	0.23	0.24	0.23	9	7101	30	5	25	0	28
CRW_01535	5S_rRNA links to Rfam database...	0.14	0.16	0.13	6	7095	39	8	31	0	31
CRW_01536	5S_rRNA links to Rfam database...	0.22	0.22	0.23	8	6986	28	5	22	1	29
CRW_01537	5S_rRNA links to Rfam database...	0.58	0.54	0.63	20	7108	17	2	10	5	17
CRW_01539	5S_rRNA links to Rfam database...	0.46	0.46	0.46	17	7103	26	3	17	6	20
CRW_01540	5S_rRNA links to Rfam database...	0.23	0.24	0.23	9	7101	33	3	27	3	28
CRW_01541	5S_rRNA links to Rfam database...	0.77	0.76	0.78	28	7104	17	0	8	9	9
CRW_01542	5S_rRNA links to Rfam database...	0.20	0.22	0.19	8	7098	35	7	27	1	29
CRW_01544	5S_rRNA links to Rfam database...	0.64	0.59	0.69	22	7108	14	0	10	4	15
CRW_01548	5S_rRNA links to Rfam database...	0.92	0.92	0.92	34	6984	11	0	3	8	3
CRW_01555	5S_rRNA links to Rfam database...	0.35	0.32	0.38	12	9013	23	1	19	3	25
CRW_01556	5S_rRNA links to Rfam database...	0.78	0.78	0.78	29	7103	19	0	8	11	8
CRW_01557	5S_rRNA links to Rfam database...	0.20	0.22	0.20	8	7099	34	2	31	1	29
CRW_01559	5S_rRNA links to Rfam database...	0.32	0.32	0.32	12	7223	30	3	22	5	25
CRW_01562	5S_rRNA links to Rfam database...	0.69	0.65	0.73	24	7107	17	0	9	8	13
CRW_01563	5S_rRNA links to Rfam database...	0.62	0.59	0.65	22	6869	16	2	10	4	15
CRW_01566	5S_rRNA links to Rfam database...	0.66	0.62	0.70	23	7107	18	0	10	8	14
CRW_01568	5S_rRNA links to Rfam database...	0.42	0.43	0.41	16	7101	27	0	23	4	21
CRW_01569	5S_rRNA links to Rfam database...	0.21	0.22	0.21	8	7101	33	2	29	2	29
CRW_01570	5S_rRNA links to Rfam database...	0.33	0.32	0.34	12	7105	26	3	20	3	25
CRW_01572	5S_rRNA links to Rfam database...	0.51	0.43	0.62	16	6995	18	0	10	8	21
CRW_01573	5S_rRNA links to Rfam database...	0.25	0.27	0.24	10	7219	34	6	25	3	27
CRW_01578	5S_rRNA links to Rfam database...	0.93	0.92	0.94	34	7104	11	0	2	9	3
CRW_01580	5S_rRNA links to Rfam database...	0.22	0.22	0.22	8	7104	28	8	20	0	29
CRW_01581	5S_rRNA links to Rfam database...	0.13	0.14	0.14	5	7105	33	1	29	3	32
CRW_01583	5S_rRNA links to Rfam database...	0.00	0.00	0.00	0	7107	33	4	29	0	37
CRW_01584	5S_rRNA links to Rfam database...	0.86	0.86	0.86	32	7103	12	0	5	7	5
CRW_01590	5S_rRNA links to Rfam database...	-0.01	0.00	0.00	0	7100	41	5	35	1	37
CRW_01593	5S_rRNA links to Rfam database...	0.75	0.70	0.81	26	7108	14	0	6	8	11
CRW_01595	5S_rRNA links to Rfam database...	0.48	0.46	0.52	17	8482	23	0	16	7	20
CRW_01599	5S_rRNA links to Rfam database...	0.51	0.49	0.53	18	7106	21	1	15	5	19
CRW_01603	5S_rRNA links to Rfam database...	0.10	0.11	0.11	4	7102	34	8	26	0	33
CRW_01605	5S_rRNA links to Rfam database...	0.73	0.73	0.73	27	7103	17	0	10	7	10
CRW_01606	5S_rRNA links to Rfam database...	0.11	0.11	0.11	4	7104	33	5	27	1	33
CRW_01608	5S_rRNA links to Rfam database...	0.38	0.38	0.39	14	8349	27	1	21	5	23
CRW_01613	5S_rRNA links to Rfam database...	0.51	0.49	0.55	18	6988	18	2	13	3	19
CRW_01616	5S_rRNA links to Rfam database...	0.15	0.16	0.14	6	7097	37	8	29	0	31
CRW_01617	5S_rRNA links to Rfam database...	0.22	0.22	0.24	8	7106	28	6	20	2	29
CRW_01620	5S_rRNA links to Rfam database...	0.85	0.86	0.84	32	6983	13	0	6	7	5
CRW_01621	5S_rRNA links to Rfam database...	-0.01	0.00	0.00	0	7103	37	9	28	0	37
CRW_01623	5S_rRNA links to Rfam database...	0.39	0.38	0.41	14	7106	25	1	19	5	23
CRW_01625	5S_rRNA links to Rfam database...	0.31	0.30	0.32	11	7106	28	1	22	5	26
NDB_00014	-	0.95	0.90	1.00	9	181	0	0	0	0	1
NDB_00015	-	0.36	0.40	0.36	4	265	7	0	7	0	6
NDB_00016	-	0.96	0.92	1.00	11	265	0	0	0	0	1
NDB_00047	-	0.96	0.92	1.00	11	265	0	0	0	0	1
NDB_00048	-	0.96	0.93	1.00	26	1514	0	0	0	0	2
NDB_00049	-	0.96	0.92	1.00	12	313	0	0	0	0	1
NDB_00051	tRNA links to Rfam database...	0.52	0.50	0.55	12	2753	11	1	9	1	12
PDB_00001	-	-0.03	0.00	0.00	0	270	6	0	6	0	12
PDB_00002	-	0.24	0.25	0.29	2	203	5	1	4	0	6
PDB_00003	-	0.78	0.75	0.82	9	340	2	0	2	0	3
PDB_00004	-	0.94	0.89	1.00	17	803	0	0	0	0	2
PDB_00005	Tymo_tRNA-like links to Rfam database...	0.42	0.36	0.50	5	936	6	0	5	1	9
PDB_00006	-	0.96	0.93	1.00	13	690	1	0	0	1	1
PDB_00011	-	0.96	0.92	1.00	11	265	0	0	0	0	1
PDB_00012	mir-TAR links to Rfam database...	0.92	0.86	1.00	6	400	2	0	0	2	1
PDB_00013	-	0.95	0.90	1.00	9	397	1	0	0	1	1
PDB_00017	-	0.36	0.27	0.50	4	695	4	0	4	0	11
PDB_00018	-	0.18	0.15	0.25	3	1023	9	2	7	0	17
PDB_00019	-	0.93	0.88	1.00	7	246	1	0	0	1	1
PDB_00020	-	0.39	0.35	0.47	7	765	8	0	8	0	13
PDB_00021	-	0.87	0.88	0.88	7	182	1	0	1	0	1
PDB_00022	-	0.81	0.67	1.00	6	247	0	0	0	0	3
PDB_00032	-	0.93	0.93	0.93	14	888	5	0	1	4	1
PDB_00034	-	0.91	0.83	1.00	10	368	0	0	0	0	2
PDB_00035	-	0.94	0.89	1.00	8	202	0	0	0	0	1
PDB_00036	-	0.11	0.11	0.12	3	3461	22	1	21	0	24
PDB_00039	-	-0.01	0.00	0.00	0	5311	45	0	45	0	45
PDB_00040	-	0.83	0.70	1.00	7	269	1	0	0	1	3
PDB_00041	-	0.61	0.50	0.75	6	622	2	0	2	0	6
PDB_00043	-	0.96	0.92	1.00	12	423	0	0	0	0	1
PDB_00048	-	1.00	1.00	1.00	9	291	1	0	0	1	0
PDB_00049	-	0.95	0.90	1.00	9	222	0	0	0	0	1
PDB_00053	-	0.73	0.55	1.00	6	429	0	0	0	0	5
PDB_00054	-	-0.03	0.00	0.00	0	186	4	0	4	0	10
PDB_00056	-	-0.02	0.00	0.00	0	615	15	0	15	0	16
PDB_00057	-	1.00	1.00	1.00	10	341	2	0	0	2	0
PDB_00065	-	0.95	0.90	1.00	9	397	2	0	0	2	1
PDB_00070	tRNA links to Rfam database...	0.53	0.50	0.57	12	2829	12	0	9	3	12
PDB_00074	-	-0.02	0.00	0.00	0	371	7	0	7	0	12
PDB_00081	-	1.00	1.00	1.00	9	181	0	0	0	0	0
PDB_00088	-	0.91	0.83	1.00	10	425	0	0	0	0	2
PDB_00096	-	0.39	0.33	0.50	4	317	4	0	4	0	8
PDB_00098	-	1.00	1.00	1.00	6	225	3	0	0	3	0
PDB_00102	-	1.00	1.00	1.00	8	223	0	0	0	0	0
PDB_00104	-	-0.03	0.00	0.00	0	613	17	0	17	0	16
PDB_00107	-	0.53	0.55	0.55	6	454	8	0	5	3	5
PDB_00108	-	1.00	1.00	1.00	7	203	0	0	0	0	0
PDB_00110	-	0.85	0.86	0.86	6	246	1	0	1	0	1
PDB_00113	-	0.88	0.89	0.89	8	222	1	0	1	0	1
PDB_00115	-	-0.02	0.00	0.00	0	549	12	0	12	0	16
PDB_00116	-	1.00	1.00	1.00	6	225	1	0	0	1	0
PDB_00119	-	0.73	0.70	0.78	7	244	2	0	2	0	3
PDB_00120	-	1.00	1.00	1.00	10	221	0	0	0	0	0
PDB_00121	-	0.95	0.90	1.00	9	222	0	0	0	0	1
PDB_00122	-	0.96	0.92	1.00	11	289	0	0	0	0	1
PDB_00123	-	0.31	0.33	0.30	12	4146	28	4	24	0	24
PDB_00124	-	-0.02	0.00	0.00	0	485	11	2	9	0	10
PDB_00125	-	0.46	0.30	0.75	3	227	1	0	1	0	7
PDB_00128	-	0.84	0.71	1.00	10	486	0	0	0	0	4
PDB_00130	-	1.00	1.00	1.00	6	270	2	0	0	2	0
PDB_00132	-	0.96	0.92	1.00	11	424	0	0	0	0	1
PDB_00134	-	0.72	0.63	0.83	5	372	3	0	1	2	3
PDB_00136	-	0.96	0.92	1.00	24	2391	2	0	0	2	2
PDB_00137	-	0.83	0.69	1.00	9	397	0	0	0	0	4
PDB_00138	-	-0.02	0.00	0.00	0	371	7	0	7	0	8
PDB_00142	-	1.00	1.00	1.00	12	423	1	0	0	1	0
PDB_00149	-	0.89	0.87	0.93	13	689	2	0	1	1	2
PDB_00150	-	0.79	0.80	0.80	8	290	3	0	2	1	2
PDB_00152	-	1.00	1.00	1.00	8	182	0	0	0	0	0
PDB_00153	-	0.90	0.90	0.90	9	243	1	0	1	0	1
PDB_00155	-	0.93	0.88	1.00	7	318	1	0	0	1	1
PDB_00157	-	0.27	0.28	0.28	8	3292	24	1	20	3	21
PDB_00158	-	0.75	0.65	0.87	13	846	2	0	2	0	7
PDB_00159	-	0.85	0.73	1.00	8	343	0	0	0	0	3
PDB_00160	-	1.00	1.00	1.00	9	267	2	0	0	2	0
PDB_00168	-	0.73	0.67	0.80	4	295	2	0	1	1	2
PDB_00169	-	0.89	0.80	1.00	8	223	0	0	0	0	2
PDB_00170	-	1.00	1.00	1.00	16	614	0	0	0	0	0
PDB_00171	-	0.76	0.58	1.00	7	428	0	0	0	0	5
PDB_00174	-	0.93	0.91	0.95	20	1014	1	0	1	0	2
PDB_00175	-	-0.01	0.00	0.00	0	4524	36	1	35	0	36
PDB_00178	-	0.63	0.64	0.64	7	517	4	0	4	0	4
PDB_00181	-	0.77	0.78	0.78	7	222	2	0	2	0	2
PDB_00182	-	0.88	0.78	1.00	7	246	1	0	0	1	2
PDB_00183	-	0.95	0.91	1.00	21	1464	0	0	0	0	2
PDB_00184	-	0.96	0.92	1.00	12	549	0	0	0	0	1
PDB_00185	-	0.96	0.93	1.00	26	2900	2	0	0	2	2
PDB_00190	-	0.95	0.90	1.00	9	222	0	0	0	0	1
PDB_00192	-	0.29	0.25	0.36	9	3215	16	0	16	0	27
PDB_00195	-	-0.01	0.00	0.00	0	3446	40	0	40	0	42
PDB_00196	-	0.96	0.93	1.00	26	1570	0	0	0	0	2
PDB_00197	-	0.92	0.86	1.00	6	294	3	0	0	3	1
PDB_00200	-	1.00	1.00	1.00	9	201	0	0	0	0	0
PDB_00201	-	0.75	0.80	0.73	8	314	3	0	3	0	2
PDB_00202	-	1.00	1.00	1.00	14	547	0	0	0	0	0
PDB_00203	-	0.55	0.54	0.58	7	549	5	0	5	0	6
PDB_00205	-	1.00	1.00	1.00	14	421	0	0	0	0	0
PDB_00206	-	1.00	1.00	1.00	8	268	1	0	0	1	0
PDB_00207	-	0.96	0.93	1.00	13	365	0	0	0	0	1
PDB_00209	-	0.74	0.55	1.00	6	555	0	0	0	0	5
PDB_00211	-	0.95	0.90	1.00	9	181	0	0	0	0	1
PDB_00213	Gammaretro_CES links to Rfam database...	0.84	0.83	0.85	34	5010	7	0	6	1	7
PDB_00214	-	0.90	0.82	1.00	9	397	1	0	0	1	2
PDB_00215	-	-0.02	0.00	0.00	0	1105	23	0	23	0	24
PDB_00219	-	1.00	1.00	1.00	7	203	1	0	0	1	0
PDB_00221	-	0.88	0.89	0.89	8	244	1	0	1	0	1
PDB_00224	-	0.74	0.75	0.75	6	182	2	0	2	0	2
PDB_00229	tRNA links to Rfam database...	0.48	0.48	0.50	11	2753	14	1	10	3	12
PDB_00234	-	-0.04	0.00	0.00	0	266	10	0	10	0	12
PDB_00236	-	-0.02	0.00	0.00	0	1108	20	0	20	0	24
PDB_00237	-	1.00	1.00	1.00	9	369	4	0	0	4	0
PDB_00239	-	0.59	0.44	0.80	8	810	2	0	2	0	10
PDB_00243	-	0.54	0.42	0.71	5	623	2	0	2	0	7
PDB_00248	-	0.86	0.75	1.00	9	267	0	0	0	0	3
PDB_00249	-	0.35	0.27	0.50	3	270	3	0	3	0	8
PDB_00250	-	0.90	0.88	0.92	22	1746	4	0	2	2	3
PDB_00252	-	-0.02	0.00	0.00	0	763	18	2	15	1	15
PDB_00254	-	-0.04	0.00	0.00	0	265	11	0	11	0	12
PDB_00256	-	-0.02	0.00	0.00	0	319	6	5	1	0	4
PDB_00257	-	0.70	0.64	0.78	7	342	2	0	2	0	4
PDB_00258	-	1.00	1.00	1.00	8	245	0	0	0	0	0
PDB_00261	-	0.97	0.94	1.00	15	481	0	0	0	0	1
PDB_00262	-	-0.02	0.00	0.00	0	1106	22	0	22	0	24
PDB_00264	-	-0.02	0.00	0.00	0	1112	16	0	16	0	18
PDB_00267	-	-0.04	0.00	0.00	0	365	13	0	13	0	14
PDB_00286	-	-0.03	0.00	0.00	0	183	9	0	7	2	6
PDB_00293	-	-0.01	0.00	0.00	0	1111	17	8	9	0	12
PDB_00307	-	0.11	0.11	0.11	5	11130	41	8	32	1	40
PDB_00312	-	1.00	1.00	1.00	9	426	1	0	0	1	0
PDB_00313	tRNA links to Rfam database...	0.32	0.37	0.28	7	2676	18	5	13	0	12
PDB_00317	-	1.00	1.00	1.00	10	368	1	0	0	1	0
PDB_00326	-	0.81	0.79	0.85	22	3715	5	3	1	1	6
PDB_00327	tRNA links to Rfam database...	0.64	0.65	0.63	15	3057	11	0	9	2	8
PDB_00339	-	0.93	0.88	1.00	14	652	1	0	0	1	2
PDB_00341	-	0.63	0.50	0.80	8	693	2	0	2	0	8
PDB_00342	-	-0.02	0.00	0.00	0	761	19	0	19	0	10
PDB_00343	-	0.80	0.76	0.84	16	1577	5	0	3	2	5
PDB_00347	-	1.00	1.00	1.00	20	1156	2	0	0	2	0
PDB_00349	-	-0.01	0.00	0.00	0	932	14	2	12	0	14
PDB_00351	-	-0.02	0.00	0.00	0	550	11	2	9	0	12
PDB_00352	-	0.67	0.58	0.79	11	1211	3	0	3	0	8
PDB_00357	-	-0.01	0.00	0.00	0	767	13	6	7	0	10
PDB_00358	-	0.35	0.36	0.35	17	10536	35	0	32	3	30
PDB_00362	tRNA links to Rfam database...	1.00	1.00	1.00	22	2828	3	0	0	3	0
PDB_00365	-	1.00	1.00	1.00	14	421	0	0	0	0	0
PDB_00370	-	0.34	0.48	0.25	12	15177	42	23	13	6	13
PDB_00371	-	0.97	0.93	1.00	14	547	0	0	0	0	1
PDB_00377	-	1.00	1.00	1.00	12	516	1	0	0	1	0
PDB_00378	-	0.93	0.93	0.93	13	689	2	0	1	1	1
PDB_00392	tRNA links to Rfam database...	0.60	0.62	0.59	13	2828	14	2	7	5	8
PDB_00400	-	-0.01	0.00	0.00	0	3134	26	0	26	0	34
PDB_00402	tRNA links to Rfam database...	0.50	0.52	0.48	12	2750	17	0	13	4	11
PDB_00411	-	0.82	0.73	0.92	11	583	1	0	1	0	4
PDB_00417	-	0.52	0.54	0.50	30	14136	30	8	22	0	26
PDB_00420	-	0.95	0.90	1.00	9	487	4	0	0	4	1
PDB_00421	-	0.37	0.37	0.36	16	11432	36	4	24	8	27
PDB_00425	tRNA links to Rfam database...	0.93	0.86	1.00	19	2682	3	0	0	3	3
PDB_00430	tRNA links to Rfam database...	0.92	0.88	0.96	22	3217	3	0	1	2	3
PDB_00431	tRNA links to Rfam database...	0.51	0.50	0.53	10	2192	10	1	8	1	10
PDB_00433	-	0.42	0.41	0.42	14	6637	19	6	13	0	20
PDB_00447	-	0.22	0.20	0.25	9	7104	27	2	25	0	35
PDB_00454	-	1.00	1.00	1.00	32	2669	0	0	0	0	0
PDB_00474	tRNA links to Rfam database...	0.73	0.70	0.76	16	2680	8	0	5	3	7
PDB_00475	-	0.00	0.00	0.00	0	10827	51	12	39	0	32
PDB_00481	-	0.88	0.77	1.00	20	1871	2	0	0	2	6
PDB_00513	-	1.00	1.00	1.00	7	224	1	0	0	1	0
PDB_00522	-	0.53	0.56	0.53	10	1109	10	0	9	1	8
PDB_00526	-	-0.01	0.00	0.00	0	294	7	1	5	1	3
PDB_00527	-	-0.02	0.00	0.00	0	292	8	1	7	0	5
PDB_00537	-	1.00	1.00	1.00	9	397	3	0	0	3	0
PDB_00553	mir-TAR links to Rfam database...	0.90	0.82	1.00	9	456	0	0	0	0	2
PDB_00565	-	0.57	0.54	0.61	27	8084	20	0	17	3	23
PDB_00569	-	0.39	0.40	0.38	18	11429	31	2	27	2	27
PDB_00570	-	0.78	0.82	0.75	18	2254	6	4	2	0	4
PDB_00571	tRNA links to Rfam database...	0.89	0.84	0.95	21	3299	2	1	0	1	4
PDB_00573	-	0.38	0.41	0.36	14	6631	25	4	21	0	20
PDB_00584	-	0.29	0.29	0.29	5	1468	12	2	10	0	12
PDB_00593	-	0.53	0.52	0.53	24	11431	27	0	21	6	22
PDB_00599	-	1.00	1.00	1.00	14	547	0	0	0	0	0
PDB_00603	-	1.00	1.00	1.00	10	243	0	0	0	0	0
PDB_00611	-	-0.01	0.00	0.00	0	771	12	1	8	3	11
PDB_00617	-	0.90	0.90	0.90	9	266	1	0	1	0	1
PDB_00627	-	0.76	0.76	0.76	13	1636	4	3	1	0	4
PDB_00629	-	0.78	0.70	0.89	16	1635	2	0	2	0	7
PDB_00637	-	0.81	0.81	0.81	17	2325	9	0	4	5	4
PDB_00648	-	0.92	0.92	0.92	12	848	3	0	1	2	1
PDB_00663	-	-0.01	0.00	0.00	0	930	20	0	16	4	10
PDB_00667	tRNA links to Rfam database...	0.62	0.59	0.65	13	2830	9	4	3	2	9
PDB_00679	-	0.36	0.38	0.34	21	17517	53	5	35	13	35
PDB_00681	-	-0.02	0.00	0.00	0	1255	20	1	19	0	19
PDB_00682	-	-0.03	0.00	0.00	0	482	14	0	14	0	16
PDB_00686	-	0.97	0.95	1.00	18	685	0	0	0	0	1
PDB_00687	-	1.00	1.00	1.00	12	618	0	0	0	0	0
PDB_00692	-	0.15	0.15	0.18	3	1208	14	0	14	0	17
PDB_00693	-	0.82	0.82	0.82	14	1159	6	0	3	3	3
PDB_00698	-	0.92	0.89	0.94	17	843	1	0	1	0	2
PDB_00702	-	-0.01	0.00	0.00	0	4338	33	4	29	0	36
PDB_00705	-	0.93	0.88	1.00	7	246	0	0	0	0	1
PDB_00709	-	-0.02	0.00	0.00	0	761	19	0	19	0	16
PDB_00710	-	-0.01	0.00	0.00	0	775	5	0	5	0	16
PDB_00713	-	0.28	0.24	0.33	5	2001	11	0	10	1	16
PDB_00716	HDV_ribozyme links to Rfam database...	0.68	0.57	0.81	13	2685	3	0	3	0	10
PDB_00724	-	-0.01	0.00	0.00	0	2119	26	1	25	0	29
PDB_00725	-	0.93	0.87	1.00	13	582	1	0	0	1	2
PDB_00726	-	-0.02	0.00	0.00	0	343	10	0	8	2	9
PDB_00727	-	1.00	1.00	1.00	7	554	5	0	0	5	0
PDB_00728	-	0.97	0.93	1.00	14	482	0	0	0	0	1
PDB_00732	-	0.26	0.27	0.28	8	2974	23	1	20	2	22
PDB_00733	-	0.22	0.23	0.23	7	2895	25	2	22	1	23
PDB_00734	-	0.73	0.70	0.78	7	222	2	0	2	0	3
PDB_00737	-	0.90	0.82	1.00	9	342	0	0	0	0	2
PDB_00740	-	0.73	0.55	1.00	6	225	0	0	0	0	5
PDB_00741	Entero_5_CRE links to Rfam database...	0.97	0.94	1.00	16	687	0	0	0	0	1
PDB_00746	-	0.47	0.47	0.47	18	4715	22	0	20	2	20
PDB_00750	-	0.30	0.29	0.31	14	11890	38	1	30	7	35
PDB_00751	-	0.87	0.77	1.00	10	585	2	0	0	2	3
PDB_00752	-	0.08	0.09	0.09	4	7336	43	0	41	2	40
PDB_00754	-	0.20	0.25	0.18	3	1468	16	4	10	2	9
PDB_00767	-	1.00	1.00	1.00	20	2191	6	0	0	6	0
PDB_00800	-	0.32	0.34	0.32	10	2049	21	2	19	0	19
PDB_00804	-	0.23	0.24	0.22	12	15345	53	6	37	10	38
PDB_00806	-	0.74	0.68	0.81	17	1809	6	0	4	2	8
PDB_00807	-	0.71	0.65	0.79	15	1872	8	0	4	4	8
PDB_00809	-	0.67	0.57	0.80	8	486	2	0	2	0	6
PDB_00810	s2m links to Rfam database...	0.55	0.47	0.67	8	1069	4	0	4	0	9
PDB_00815	-	0.58	0.56	0.63	5	622	5	0	3	2	4
PDB_00823	-	-0.03	0.00	0.00	0	186	4	0	4	0	9
PDB_00828	Purine links to Rfam database...	0.85	0.81	0.88	22	2460	3	1	2	0	5
PDB_00829	Purine links to Rfam database...	0.78	0.75	0.82	18	2256	4	1	3	0	6
PDB_00842	-	0.72	0.63	0.83	5	372	1	0	1	0	3
PDB_00851	-	0.34	0.34	0.35	14	4713	26	0	26	0	27
PDB_00855	-	1.00	1.00	1.00	10	455	3	0	0	3	0
PDB_00857	-	0.57	0.60	0.56	9	1065	7	0	7	0	6
PDB_00863	-	0.54	0.44	0.67	8	978	5	0	4	1	10
PDB_00864	-	0.68	0.60	0.78	38	12992	12	1	10	1	25
PDB_00865	-	0.76	0.67	0.89	8	342	1	0	1	0	4
PDB_00868	-	-0.01	0.00	0.00	0	1319	10	0	7	3	14
PDB_00870	-	-0.02	0.00	0.00	0	1107	21	0	21	0	16
PDB_00871	-	-0.02	0.00	0.00	0	1105	23	0	23	0	24
PDB_00873	-	-0.01	0.00	0.00	0	4515	45	0	45	0	48
PDB_00874	-	-0.02	0.00	0.00	0	928	18	0	18	0	20
PDB_00876	HIV_FE links to Rfam database...	0.92	0.85	1.00	17	973	0	0	0	0	3
PDB_00878	-	0.96	0.92	1.00	11	485	0	0	0	0	1
PDB_00879	-	0.95	0.90	1.00	35	5015	5	0	0	5	4
PDB_00883	-	1.00	1.00	1.00	12	618	0	0	0	0	0
PDB_00885	-	0.91	0.83	1.00	15	805	0	0	0	0	3
PDB_00886	-	-0.01	0.00	0.00	0	4143	43	4	39	0	40
PDB_00890	-	1.00	1.00	1.00	14	689	2	0	0	2	0
PDB_00891	-	-0.02	0.00	0.00	0	927	19	6	13	0	15
PDB_00892	-	0.00	0.00	0.00	0	2548	8	0	8	0	15
PDB_00897	-	0.23	0.23	0.24	14	11417	45	4	41	0	47
PDB_00906	-	-0.01	0.00	0.00	0	6624	46	0	46	0	48
PDB_00918	-	-0.02	0.00	0.00	0	317	8	0	8	0	7
PDB_00923	-	1.00	1.00	1.00	6	184	1	0	0	1	0
PDB_00924	-	-0.01	0.00	0.00	0	3621	34	2	32	0	36
PDB_00925	-	0.53	0.55	0.55	6	340	5	0	5	0	5
PDB_00928	-	0.93	0.88	1.00	7	293	0	0	0	0	1
PDB_00929	-	-0.02	0.00	0.00	0	761	19	0	19	0	20
PDB_00932	-	0.39	0.38	0.42	5	808	7	1	6	0	8
PDB_00937	-	0.97	0.94	1.00	17	613	0	0	0	0	1
PDB_00939	-	0.20	0.22	0.19	10	10243	44	6	37	1	35
PDB_00943	-	0.27	0.27	0.29	4	1417	14	2	8	4	11
PDB_00945	-	0.55	0.50	0.63	5	457	5	0	3	2	5
PDB_00960	-	-0.03	0.00	0.00	0	394	13	2	10	1	10
PDB_00961	-	1.00	1.00	1.00	10	1760	10	0	0	10	0
PDB_00964	-	1.00	1.00	1.00	9	621	6	0	0	6	0
PDB_00966	-	-0.03	0.00	0.00	0	244	9	2	7	0	7
PDB_00967	-	0.23	0.25	0.22	12	12036	42	4	38	0	36
PDB_00973	-	-0.02	0.00	0.00	0	342	9	3	6	0	8
PDB_00974	-	0.62	0.56	0.71	5	371	2	0	2	0	4
PDB_00979	-	0.00	0.00	0.00	0	11727	56	10	44	2	48
PDB_00980	-	0.23	0.24	0.22	10	11130	37	5	30	2	31
PDB_00986	-	0.89	0.86	0.92	12	422	1	0	1	0	2
PDB_00987	-	0.69	0.63	0.77	10	548	3	0	3	0	6
PDB_00989	-	0.88	0.86	0.91	31	2969	3	0	3	0	5
PDB_00994	-	0.21	0.24	0.20	10	10535	41	8	32	1	32
PDB_01000	-	0.40	0.47	0.34	14	10837	37	9	18	10	16
PDB_01001	tRNA links to Rfam database...	0.70	0.78	0.64	14	2123	10	1	7	2	4
PDB_01002	tRNA links to Rfam database...	0.93	0.90	0.95	19	2755	6	0	1	5	2
PDB_01008	-	1.00	1.00	1.00	12	583	1	0	0	1	0
PDB_01009	tRNA links to Rfam database...	0.45	0.52	0.39	11	2457	18	6	11	1	10
PDB_01017	-	-0.03	0.00	0.00	0	422	13	0	13	0	14
PDB_01019	-	-0.03	0.00	0.00	0	422	13	0	13	0	14
PDB_01020	Purine links to Rfam database...	0.84	0.83	0.86	19	2256	5	1	2	2	4
PDB_01025	-	0.82	0.78	0.88	7	245	1	0	1	0	2
PDB_01035	-	1.00	1.00	1.00	26	1514	0	0	0	0	0
PDB_01040	-	0.24	0.25	0.25	5	1108	15	1	14	0	15
PDB_01044	-	1.00	1.00	1.00	16	930	4	0	0	4	0
PDB_01045	-	1.00	1.00	1.00	23	1202	1	0	0	1	0
PDB_01050	UnaL2 links to Rfam database...	0.80	0.77	0.83	10	618	2	0	2	0	3
PDB_01051	Telomerase-cil links to Rfam database...	1.00	1.00	1.00	13	890	5	0	0	5	0
PDB_01053	tRNA links to Rfam database...	1.00	1.00	1.00	16	1362	2	0	0	2	0
PDB_01054	-	0.47	0.51	0.43	22	11730	35	8	21	6	21
PDB_01056	-	0.88	0.89	0.89	8	244	1	0	1	0	1
PDB_01057	-	1.00	1.00	1.00	8	202	1	0	0	1	0
PDB_01059	-	-0.03	0.00	0.00	0	226	5	1	4	0	7
PDB_01060	-	-0.01	0.00	0.00	0	1986	30	0	30	0	21
PDB_01061	-	0.04	0.05	0.06	2	3125	33	0	33	0	38
PDB_01062	-	-0.02	0.00	0.00	0	932	14	0	14	0	16
PDB_01065	-	0.54	0.30	1.00	3	228	0	0	0	0	7
PDB_01070	-	0.00	0.00	0.00	0	12665	55	8	47	0	54
PDB_01071	-	0.84	0.85	0.85	11	393	2	0	2	0	2
PDB_01073	SAM links to Rfam database...	0.17	0.18	0.17	6	4336	29	3	26	0	28
PDB_01074	-	-0.01	0.00	0.00	0	2747	28	4	24	0	25
PDB_01075	-	0.79	0.75	0.83	24	2386	5	0	5	0	8
PDB_01077	-	0.75	0.74	0.78	14	1935	7	0	4	3	5
PDB_01084	-	1.00	1.00	1.00	7	224	0	0	0	0	0
PDB_01092	glmS links to Rfam database...	0.43	0.38	0.49	20	10112	23	2	19	2	32
PDB_01097	-	1.00	1.00	1.00	8	202	1	0	0	1	0
PDB_01099	-	1.00	1.00	1.00	11	265	0	0	0	0	0
PDB_01100	-	0.55	0.50	0.61	11	1467	7	0	7	0	11
PDB_01108	-	1.00	1.00	1.00	9	222	0	0	0	0	0
PDB_01114	TPP links to Rfam database...	0.74	0.67	0.82	18	2828	7	0	4	3	9
PDB_01117	-	0.87	0.82	0.93	14	765	1	0	1	0	3
PDB_01118	-	0.95	0.89	1.00	17	1579	2	0	0	2	2
PDB_01119	-	0.72	0.64	0.82	9	619	2	0	2	0	5
PDB_01126	-	0.47	0.50	0.45	14	3050	17	3	14	0	14
PDB_01127	-	-0.01	0.00	0.00	0	975	17	1	14	2	14
PDB_01128	-	0.47	0.41	0.55	11	2755	11	0	9	2	16
PDB_01130	-	0.95	0.90	1.00	18	1752	2	0	0	2	2
PDB_01133	-	1.00	1.00	1.00	10	341	1	0	0	1	0
PDB_01135	-	-0.02	0.00	0.00	0	397	9	2	7	0	9
PDB_01137	-	1.00	1.00	1.00	8	317	2	0	0	2	0
PDB_01138	-	-0.02	0.00	0.00	0	318	7	0	7	0	7
PDB_01145	-	1.00	1.00	1.00	14	766	4	0	0	4	0
PDB_01150	-	0.87	0.88	0.88	7	223	2	0	1	1	1
PDB_01152	HIV_FS2 links to Rfam database...	0.92	0.86	1.00	12	549	1	0	0	1	2
PDB_01154	-	0.80	0.73	0.89	8	397	1	0	1	0	3
PDB_01156	-	-0.01	0.00	0.00	0	3797	31	0	31	0	35
PDB_01160	-	0.15	0.15	0.16	3	2061	16	3	13	0	17
PDB_01162	-	-0.01	0.00	0.00	0	1523	22	6	11	5	9
PDB_01163	-	1.00	1.00	1.00	22	1013	0	0	0	0	0
PDB_01164	-	1.00	1.00	1.00	26	1514	0	0	0	0	0
PDB_01167	-	1.00	1.00	1.00	8	182	0	0	0	0	0
PDB_01168	-	1.00	1.00	1.00	8	182	0	0	0	0	0
PDB_01178	-	0.77	0.71	0.83	10	516	3	0	2	1	4
PDB_01187	-	0.75	0.75	0.75	39	9959	18	0	13	5	13
PDB_01194	-	0.61	0.53	0.73	8	485	3	0	3	0	7
PDB_01199	-	0.81	0.67	1.00	16	2129	0	0	0	0	8
PDB_01201	-	0.75	0.68	0.83	15	1110	3	0	3	0	7
PDB_01203	-	-0.01	0.00	0.00	0	1165	11	0	11	0	19
PDB_01205	-	-0.02	0.00	0.00	0	1014	21	4	17	0	18
PDB_01208	-	1.00	1.00	1.00	20	1156	2	0	0	2	0
PDB_01209	-	1.00	1.00	1.00	20	1156	2	0	0	2	0
PDB_01212	-	1.00	1.00	1.00	20	1156	2	0	0	2	0
PDB_01213	-	1.00	1.00	1.00	18	1063	2	0	0	2	0
PDB_01216	-	1.00	1.00	1.00	20	1156	2	0	0	2	0
PDB_01219	-	-0.02	0.00	0.00	0	928	18	0	18	0	20
PDB_01236	ykoK links to Rfam database...	0.43	0.41	0.47	22	11581	27	1	24	2	32
PDB_01237	-	1.00	1.00	1.00	8	268	0	0	0	0	0
PDB_01249	-	0.31	0.33	0.29	18	11113	46	8	36	2	36
PDB_01250	-	0.45	0.44	0.46	18	12051	21	11	10	0	23
PDB_01251	-	0.96	0.92	1.00	12	313	0	0	0	0	1
PDB_01255	-	0.62	0.59	0.66	33	12511	24	2	15	7	23
PDB_01260	-	-0.01	0.00	0.00	0	1809	21	0	21	0	25
PDB_01262	-	0.60	0.38	1.00	3	187	0	0	0	0	5
PDB_01275	-	0.97	0.94	1.00	67	18269	11	0	0	11	4
PDB_01281	-	-0.04	0.00	0.00	0	365	13	0	13	0	14
PDB_01299	-	0.65	0.53	0.80	8	893	2	0	2	0	7
PDB_01309	-	0.26	0.31	0.22	12	9126	42	14	28	0	27
PDB_01313	-	-0.03	0.00	0.00	0	266	10	4	6	0	8
PDB_01325	-	0.96	0.92	1.00	11	265	0	0	0	0	1
PDB_01332	-	0.88	0.78	1.00	7	344	0	0	0	0	2
PDB_01337	-	-0.02	0.00	0.00	0	552	9	2	7	0	11
PDB_01338	-	-0.03	0.00	0.00	0	267	9	3	6	0	8
PDB_01340	-	0.93	0.88	1.00	7	293	0	0	0	0	1
RFA_00389	Hammerhead_3 links to Rfam database...	0.69	0.67	0.71	10	1417	7	1	3	3	5
RFA_00390	Hammerhead_3 links to Rfam database...	0.74	0.67	0.83	10	1419	5	0	2	3	5
RFA_00391	Hammerhead_3 links to Rfam database...	0.70	0.60	0.82	9	1420	4	1	1	2	6
RFA_00396	Hammerhead_3 links to Rfam database...	0.93	0.93	0.93	14	1416	4	0	1	3	1
RFA_00402	Hammerhead_3 links to Rfam database...	0.74	0.67	0.83	10	1419	4	0	2	2	5
RFA_00409	Hammerhead_3 links to Rfam database...	0.80	0.80	0.80	12	1416	9	0	3	6	3
RFA_00416	Hammerhead_3 links to Rfam database...	0.80	0.80	0.80	12	1470	8	0	3	5	3
RFA_00420	-	0.73	0.73	0.73	11	3306	20	0	4	16	4
RFA_00425	Hammerhead_3 links to Rfam database...	0.45	0.47	0.44	7	1637	14	0	9	5	8
RFA_00427	Hammerhead_3 links to Rfam database...	0.62	0.60	0.64	9	1471	9	1	4	4	6
RFA_00429	-	1.00	1.00	1.00	9	771	4	0	0	4	0
RFA_00433	Hammerhead_3 links to Rfam database...	0.71	0.67	0.77	10	1418	7	2	1	4	5
RFA_00434	Hammerhead_3 links to Rfam database...	0.80	0.80	0.80	12	1416	8	0	3	5	3
RFA_00436	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	3	0	0	3	0
RFA_00440	Hammerhead_3 links to Rfam database...	0.69	0.67	0.71	10	1471	8	1	3	4	5
RFA_00442	Hammerhead_3 links to Rfam database...	0.87	0.87	0.87	13	1416	6	0	2	4	2
RFA_00444	Hammerhead_3 links to Rfam database...	0.24	0.27	0.24	4	1523	16	0	13	3	11
RFA_00446	Hammerhead_3 links to Rfam database...	0.93	0.93	0.93	14	1470	4	0	1	3	1
RFA_00449	Hammerhead_3 links to Rfam database...	0.27	0.27	0.29	4	1471	12	1	9	2	11
RFA_00582	Y_RNA links to Rfam database...	0.97	0.93	1.00	14	5981	18	0	0	18	1
RFA_00583	Y_RNA links to Rfam database...	0.93	0.93	0.93	14	4935	21	0	1	20	1
RFA_00584	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	2911	13	0	0	13	0
RFA_00585	Y_RNA links to Rfam database...	0.90	0.87	0.93	13	4837	20	0	1	19	2
RFA_00586	Y_RNA links to Rfam database...	0.00	0.00	0.00	0	3899	22	5	12	5	15
RFA_00587	Y_RNA links to Rfam database...	0.93	0.87	1.00	13	4838	16	0	0	16	2
RFA_00588	Y_RNA links to Rfam database...	0.97	0.93	1.00	14	4546	16	0	0	16	1
RFA_00589	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4356	16	0	0	16	0
RFA_00590	-	0.89	0.80	1.00	12	5344	21	0	0	21	3
RFA_00594	Y_RNA links to Rfam database...	0.90	0.87	0.93	13	2761	6	0	1	5	2
RFA_00596	Y_RNA links to Rfam database...	0.00	0.00	0.00	0	5972	34	5	18	11	15
RFA_00603	Telomerase-cil links to Rfam database...	0.55	0.60	0.50	21	13488	33	5	16	12	14
RFA_00604	Telomerase-cil links to Rfam database...	0.73	0.77	0.69	27	13491	29	5	7	17	8
RFA_00605	Telomerase-cil links to Rfam database...	0.15	0.17	0.14	6	15181	46	6	32	8	29
RFA_00607	Telomerase-cil links to Rfam database...	0.44	0.44	0.44	16	17730	39	1	19	19	20
RFA_00609	Telomerase-cil links to Rfam database...	0.59	0.62	0.56	23	17914	37	1	17	19	14
RFA_00610	Telomerase-cil links to Rfam database...	0.09	0.11	0.08	4	17154	53	17	30	6	33
RFA_00611	Telomerase-cil links to Rfam database...	0.65	0.69	0.62	24	13002	29	3	12	14	11
RFA_00613	Telomerase-cil links to Rfam database...	0.16	0.17	0.15	6	12839	41	8	27	6	29
RFA_00615	Telomerase-cil links to Rfam database...	0.10	0.11	0.09	4	13321	42	10	31	1	31
RFA_00632	HDV_ribozyme links to Rfam database...	0.25	0.25	0.27	7	4069	22	1	18	3	21
RFA_00636	HDV_ribozyme links to Rfam database...	0.40	0.39	0.41	11	3978	19	1	15	3	17
RFA_00642	Vimentin3 links to Rfam database...	-0.01	0.00	0.00	0	2906	20	2	18	0	18
RFA_00643	Vimentin3 links to Rfam database...	-0.01	0.00	0.00	0	2190	21	4	17	0	18
RFA_00644	Vimentin3 links to Rfam database...	-0.01	0.00	0.00	0	2682	21	0	19	2	18
RFA_00645	Vimentin3 links to Rfam database...	-0.01	0.00	0.00	0	2396	19	4	15	0	18
RFA_00649	Vimentin3 links to Rfam database...	0.42	0.44	0.40	8	2125	14	1	11	2	10
RFA_00651	Vimentin3 links to Rfam database...	0.10	0.11	0.11	2	2061	17	1	16	0	16
RFA_00653	Vimentin3 links to Rfam database...	-0.01	0.00	0.00	0	2123	22	4	18	0	18
RFA_00654	Vimentin3 links to Rfam database...	-0.01	0.00	0.00	0	2394	21	3	18	0	18
RFA_00658	Hammerhead_1 links to Rfam database...	0.56	0.50	0.64	7	1117	8	0	4	4	7
RFA_00659	Hammerhead_1 links to Rfam database...	0.20	0.21	0.21	3	1114	14	1	10	3	11
RFA_00664	Hammerhead_1 links to Rfam database...	-0.02	0.00	0.00	0	974	16	0	16	0	14
RFA_00667	Hammerhead_1 links to Rfam database...	0.27	0.29	0.27	4	975	12	1	10	1	10
RFA_00668	Hammerhead_1 links to Rfam database...	0.44	0.43	0.46	6	977	7	0	7	0	8
RFA_00672	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	893	12	0	10	2	13
RFA_00673	Hammerhead_1 links to Rfam database...	0.36	0.36	0.38	5	1115	10	0	8	2	9
RFA_00674	Hammerhead_1 links to Rfam database...	0.74	0.71	0.77	10	1115	5	0	3	2	4
RFA_00675	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	979	13	0	11	2	14
RFA_00677	Hammerhead_1 links to Rfam database...	0.55	0.57	0.53	8	975	10	0	7	3	6
RFA_00678	Hammerhead_1 links to Rfam database...	0.30	0.29	0.33	4	934	10	0	8	2	10
RFA_00680	Hammerhead_1 links to Rfam database...	0.42	0.43	0.43	6	1114	12	0	8	4	8
RFA_00683	-	0.15	0.14	0.18	2	1024	10	0	9	1	12
RFA_00684	Hammerhead_1 links to Rfam database...	0.37	0.29	0.50	4	982	4	1	3	0	10
RFA_00685	Hammerhead_1 links to Rfam database...	0.46	0.43	0.50	6	978	6	2	4	0	8
RFA_00695	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	7002	39	2	17	20	14
RFA_00703	Hammerhead_1 links to Rfam database...	0.39	0.43	0.35	6	4261	25	6	5	14	8
RFA_00704	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	979	11	2	9	0	14
RFA_00705	Hammerhead_1 links to Rfam database...	0.69	0.71	0.67	10	1020	6	0	5	1	4
RFA_00706	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	1023	12	2	10	0	14
RFA_00707	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	1025	11	0	10	1	14
RFA_00708	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	1025	10	1	9	0	14
RFA_00709	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	978	12	0	12	0	14
RFA_00710	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	978	12	1	11	0	14
RFA_00711	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	1022	14	2	11	1	14
RFA_00715	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	936	10	0	10	0	14
RFA_00716	Hammerhead_1 links to Rfam database...	0.06	0.07	0.07	1	932	13	0	13	0	13
RFA_00717	Hammerhead_1 links to Rfam database...	0.69	0.64	0.75	9	891	4	0	3	1	5
RFA_00720	-	1.00	1.00	1.00	14	1162	4	0	0	4	0
RFA_00721	-	0.29	0.29	0.31	4	1163	11	0	9	2	10
RFA_00730	s2m links to Rfam database...	0.48	0.42	0.56	5	894	6	0	4	2	7
RFA_00731	s2m links to Rfam database...	0.55	0.58	0.54	7	890	9	1	5	3	5
RFA_00733	s2m links to Rfam database...	0.23	0.25	0.23	3	890	12	1	9	2	9
RFA_00734	s2m links to Rfam database...	0.52	0.50	0.55	6	892	7	0	5	2	6
RFA_00736	s2m links to Rfam database...	0.48	0.42	0.56	5	894	7	0	4	3	7
RFA_00737	s2m links to Rfam database...	0.34	0.33	0.36	4	892	9	2	5	2	8
RFA_00745	s2m links to Rfam database...	0.66	0.67	0.67	8	934	8	0	4	4	4
RFA_00749	s2m links to Rfam database...	0.55	0.58	0.54	7	890	9	1	5	3	5
RFA_00758	s2m links to Rfam database...	0.45	0.42	0.50	5	893	5	0	5	0	7
RFA_00762	s2m links to Rfam database...	0.55	0.58	0.54	7	890	9	1	5	3	5
RFA_00763	s2m links to Rfam database...	0.58	0.58	0.58	7	891	8	0	5	3	5
RFA_00764	s2m links to Rfam database...	0.48	0.42	0.56	5	894	6	0	4	2	7
RFA_00765	s2m links to Rfam database...	0.36	0.42	0.33	5	888	13	0	10	3	7
RFA_00767	Corona_pk3 links to Rfam database...	0.48	0.44	0.53	8	1876	8	1	6	1	10
RFA_00768	Corona_pk3 links to Rfam database...	0.50	0.44	0.57	8	1877	8	1	5	2	10
RFA_00769	Corona_pk3 links to Rfam database...	0.41	0.44	0.38	8	1932	13	3	10	0	10
RFA_00770	Corona_pk3 links to Rfam database...	0.51	0.50	0.53	9	1999	12	2	6	4	9
RFA_00773	Corona_pk3 links to Rfam database...	0.42	0.39	0.47	7	1938	12	1	7	4	11
RFA_00779	Corona_pk3 links to Rfam database...	0.26	0.28	0.26	5	1934	14	6	8	0	13
RFA_00781	Gammaretro_CES links to Rfam database...	0.72	0.72	0.72	23	5018	13	0	9	4	9
RFA_00786	Gammaretro_CES links to Rfam database...	0.32	0.31	0.34	10	5021	22	2	17	3	22
RFA_00791	Gammaretro_CES links to Rfam database...	0.41	0.44	0.39	14	5115	23	5	17	1	18
RFA_00792	Gammaretro_CES links to Rfam database...	0.18	0.16	0.21	5	5026	20	2	17	1	27
RFA_00801	Gammaretro_CES links to Rfam database...	0.31	0.31	0.32	10	5019	22	2	19	1	22
RFA_00808	RydC links to Rfam database...	0.68	0.56	0.82	9	2005	2	2	0	0	7
RFA_00809	RydC links to Rfam database...	0.47	0.38	0.60	6	2135	6	0	4	2	10
SPR_00007	tRNA links to Rfam database...	0.54	0.57	0.52	12	2827	13	0	11	2	9
SPR_00009	tRNA links to Rfam database...	0.63	0.65	0.62	13	2829	10	0	8	2	7
SPR_00010	tRNA links to Rfam database...	0.71	0.76	0.67	16	2826	10	0	8	2	5
SPR_00012	tRNA links to Rfam database...	0.22	0.25	0.21	5	2826	20	3	16	1	15
SPR_00013	tRNA links to Rfam database...	0.22	0.25	0.21	5	2826	20	3	16	1	15
SPR_00016	tRNA links to Rfam database...	0.60	0.62	0.59	13	2828	11	0	9	2	8
SPR_00017	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	3	0	0	3	0
SPR_00020	tRNA links to Rfam database...	0.31	0.35	0.28	7	2676	18	5	13	0	13
SPR_00022	tRNA links to Rfam database...	0.50	0.57	0.44	12	2899	16	2	13	1	9
SPR_00023	tRNA links to Rfam database...	0.21	0.24	0.19	5	2824	21	6	15	0	16
SPR_00025	tRNA links to Rfam database...	0.52	0.55	0.50	11	2904	13	2	9	2	9
SPR_00026	tRNA links to Rfam database...	0.68	0.71	0.65	15	2903	11	0	8	3	6
SPR_00027	tRNA links to Rfam database...	0.18	0.19	0.18	4	2904	20	2	16	2	17
SPR_00029	tRNA links to Rfam database...	0.49	0.55	0.44	11	2603	16	5	9	2	9
SPR_00030	-	0.57	0.57	0.57	12	2464	11	2	7	2	9
SPR_00032	tRNA links to Rfam database...	0.41	0.43	0.41	9	2534	14	1	12	1	12
SPR_00033	tRNA links to Rfam database...	0.30	0.33	0.28	7	2603	19	3	15	1	14
SPR_00034	-	0.57	0.57	0.57	12	2464	9	0	9	0	9
SPR_00036	tRNA links to Rfam database...	0.39	0.35	0.44	7	2759	9	4	5	0	13
SPR_00044	tRNA links to Rfam database...	0.09	0.10	0.10	2	2829	23	4	15	4	18
SPR_00045	tRNA links to Rfam database...	0.84	0.82	0.86	18	2829	5	0	3	2	4
SPR_00060	tRNA links to Rfam database...	0.81	0.81	0.81	17	2754	7	0	4	3	4
SPR_00064	tRNA links to Rfam database...	0.53	0.57	0.50	12	2826	13	2	10	1	9
SPR_00065	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	3	0	0	3	0
SPR_00066	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	4	0	0	4	0
SPR_00068	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	4	0	0	4	0
SPR_00070	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	3	0	0	3	0
SPR_00074	tRNA links to Rfam database...	0.78	0.80	0.76	16	2829	9	2	3	4	4
SPR_00078	-	0.32	0.33	0.31	5	1875	14	3	8	3	10
SPR_00079	tRNA links to Rfam database...	0.61	0.58	0.65	11	2468	9	1	5	3	8
SPR_00080	tRNA links to Rfam database...	0.61	0.58	0.65	11	2398	8	1	5	2	8
SPR_00086	tRNA links to Rfam database...	0.90	0.90	0.90	19	2829	4	0	2	2	2
SPR_00087	tRNA links to Rfam database...	0.46	0.45	0.47	9	2831	10	3	7	0	11
SPR_00088	tRNA links to Rfam database...	0.46	0.45	0.47	9	2831	10	3	7	0	11
SPR_00089	tRNA links to Rfam database...	0.46	0.45	0.47	9	2831	10	3	7	0	11
SPR_00090	tRNA links to Rfam database...	0.65	0.65	0.65	13	2830	8	3	4	1	7
SPR_00091	tRNA links to Rfam database...	0.46	0.45	0.47	9	2831	10	3	7	0	11
SPR_00095	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	2	0	0	2	0
SPR_00111	tRNA links to Rfam database...	0.70	0.67	0.74	14	2682	6	0	5	1	7
SPR_00112	tRNA links to Rfam database...	0.95	0.95	0.95	20	2680	2	0	1	1	1
SPR_00113	tRNA links to Rfam database...	0.55	0.55	0.55	11	2755	12	2	7	3	9
SPR_00114	tRNA links to Rfam database...	0.63	0.67	0.61	14	2678	14	0	9	5	7
SPR_00115	tRNA links to Rfam database...	0.76	0.76	0.76	16	2680	9	0	5	4	5
SPR_00116	tRNA links to Rfam database...	0.54	0.57	0.52	12	2678	13	3	8	2	9
SPR_00117	tRNA links to Rfam database...	0.65	0.71	0.60	15	2825	11	1	9	1	6
SPR_00121	tRNA links to Rfam database...	0.48	0.52	0.44	11	2750	17	5	9	3	10
SPR_00124	tRNA links to Rfam database...	0.50	0.45	0.56	10	2538	8	2	6	0	12
SPR_00126	-	-0.01	0.00	0.00	0	2062	19	4	14	1	20
SPR_00127	-	-0.01	0.00	0.00	0	2400	15	1	14	0	18
SPR_00137	tRNA links to Rfam database...	0.49	0.57	0.43	12	2898	18	7	9	2	9
SPR_00138	tRNA links to Rfam database...	0.61	0.60	0.63	12	2907	14	0	7	7	8
SPR_00139	tRNA links to Rfam database...	0.98	0.95	1.00	20	2906	2	0	0	2	1
SPR_00141	tRNA links to Rfam database...	0.80	0.80	0.80	16	2755	7	0	4	3	4
SPR_00142	-	0.50	0.53	0.48	10	2607	14	4	7	3	9
SPR_00153	tRNA links to Rfam database...	0.51	0.52	0.50	11	2904	14	2	9	3	10
SPR_00155	tRNA links to Rfam database...	0.49	0.52	0.46	11	2902	14	6	7	1	10
SPR_00156	tRNA links to Rfam database...	0.95	0.95	0.95	20	2905	9	0	1	8	1
SPR_00163	tRNA links to Rfam database...	0.34	0.33	0.35	7	2830	14	3	10	1	14
SPR_00164	tRNA links to Rfam database...	-0.01	0.00	0.00	0	2903	24	1	22	1	21
SPR_00166	-	0.27	0.32	0.25	6	2532	19	4	14	1	13
SPR_00167	tRNA links to Rfam database...	-0.01	0.00	0.00	0	2533	23	4	19	0	20
SPR_00176	tRNA links to Rfam database...	0.23	0.25	0.22	5	2827	19	5	13	1	15
SPR_00177	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	3	0	0	3	0
SPR_00178	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	1	0	0	1	0
SPR_00183	-	0.31	0.35	0.29	7	2826	17	2	15	0	13
SPR_00191	tRNA links to Rfam database...	0.17	0.19	0.17	4	2826	20	6	14	0	17
SPR_00200	tRNA links to Rfam database...	0.68	0.71	0.65	15	2827	8	3	5	0	6
SPR_00209	tRNA links to Rfam database...	0.81	0.89	0.74	17	3547	12	4	2	6	2
SPR_00213	tRNA links to Rfam database...	0.19	0.24	0.17	5	3798	26	3	22	1	16
SPR_00215	tRNA links to Rfam database...	0.55	0.55	0.55	11	3550	15	5	4	6	9
SPR_00218	tRNA links to Rfam database...	0.48	0.55	0.42	11	3715	19	7	8	4	9
SPR_00219	tRNA links to Rfam database...	0.49	0.55	0.44	11	3716	15	7	7	1	9
SPR_00220	tRNA links to Rfam database...	0.51	0.55	0.48	11	3718	17	2	10	5	9
SPR_00221	tRNA links to Rfam database...	0.26	0.33	0.21	7	3707	28	11	16	1	14
SPR_00223	tRNA links to Rfam database...	0.55	0.65	0.46	13	3542	16	6	9	1	7
SPR_00224	tRNA links to Rfam database...	0.50	0.55	0.46	11	3717	19	5	8	6	9
SPR_00225	tRNA links to Rfam database...	0.50	0.52	0.48	11	3718	15	3	9	3	10
SPR_00226	tRNA links to Rfam database...	0.53	0.62	0.46	13	3627	15	10	5	0	8
SPR_00227	tRNA links to Rfam database...	0.33	0.38	0.29	8	3458	21	7	13	1	13
SPR_00228	tRNA links to Rfam database...	0.47	0.60	0.38	12	3796	21	7	13	1	8
SPR_00229	tRNA links to Rfam database...	0.88	0.86	0.90	18	3383	4	0	2	2	3
SPR_00230	tRNA links to Rfam database...	-0.01	0.00	0.00	0	3540	30	7	23	0	21
SPR_00235	tRNA links to Rfam database...	0.20	0.24	0.17	5	3712	26	11	13	2	16
SPR_00236	tRNA links to Rfam database...	0.41	0.45	0.38	9	3546	20	8	7	5	11
SPR_00246	tRNA links to Rfam database...	0.34	0.35	0.33	7	2680	15	6	8	1	13
SPR_00263	tRNA links to Rfam database...	1.00	1.00	1.00	21	3549	7	0	0	7	0
SPR_00271	tRNA links to Rfam database...	0.48	0.52	0.44	11	2825	16	2	12	2	10
SPR_00273	tRNA links to Rfam database...	0.13	0.14	0.14	3	2828	20	3	16	1	18
SPR_00276	tRNA links to Rfam database...	0.32	0.38	0.29	8	2898	20	4	16	0	13
SPR_00277	tRNA links to Rfam database...	0.30	0.33	0.28	7	2901	19	2	16	1	14
SPR_00279	tRNA links to Rfam database...	0.22	0.24	0.21	5	2902	19	7	12	0	16
SPR_00281	-	0.41	0.41	0.41	7	1999	11	2	8	1	10
SPR_00289	tRNA links to Rfam database...	0.77	0.75	0.79	15	2907	7	1	3	3	5
SPR_00294	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	2	0	0	2	0
SPR_00295	tRNA links to Rfam database...	0.95	0.95	0.95	20	2754	4	0	1	3	1
SPR_00297	tRNA links to Rfam database...	0.31	0.33	0.30	7	2752	16	5	11	0	14
SPR_00298	tRNA links to Rfam database...	0.54	0.60	0.50	12	2751	12	3	9	0	8
SPR_00309	tRNA links to Rfam database...	0.71	0.76	0.67	16	2902	12	2	6	4	5
SPR_00314	tRNA links to Rfam database...	0.95	0.95	0.95	20	2905	6	0	1	5	1
SPR_00315	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	3	0	0	3	0
SPR_00316	tRNA links to Rfam database...	0.51	0.57	0.46	12	2900	16	2	12	2	9
SPR_00317	tRNA links to Rfam database...	0.54	0.60	0.50	12	2902	14	7	5	2	8
SPR_00318	tRNA links to Rfam database...	0.46	0.48	0.45	10	2904	14	3	9	2	11
SPR_00320	tRNA links to Rfam database...	0.58	0.58	0.58	11	2756	10	0	8	2	8
SPR_00321	tRNA links to Rfam database...	0.51	0.57	0.46	12	2977	16	4	10	2	9
SPR_00327	tRNA links to Rfam database...	0.45	0.48	0.43	10	2980	18	2	11	5	11
SPR_00329	tRNA links to Rfam database...	0.76	0.76	0.76	16	2829	9	0	5	4	5
SPR_00331	tRNA links to Rfam database...	1.00	1.00	1.00	20	2755	3	0	0	3	0
SPR_00333	tRNA links to Rfam database...	0.90	0.90	0.90	19	2754	6	0	2	4	2
SPR_00339	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	5	0	0	5	0
SPR_00352	tRNA links to Rfam database...	0.67	0.62	0.72	13	2908	7	2	3	2	8
SPR_00353	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	4	0	0	4	0
SPR_00356	tRNA links to Rfam database...	0.75	0.71	0.79	15	2756	11	0	4	7	6
SPR_00357	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	2	0	0	2	0
SPR_00358	tRNA links to Rfam database...	0.90	0.90	0.90	18	2906	7	0	2	5	2
SPR_00359	tRNA links to Rfam database...	0.55	0.59	0.52	13	2901	16	2	10	4	9
SPR_00360	tRNA links to Rfam database...	0.40	0.41	0.41	9	2679	17	5	8	4	13
SPR_00362	-	0.46	0.46	0.46	6	1418	14	0	7	7	7
SPR_00363	-	-0.01	0.00	0.00	0	1578	18	4	14	0	15
SPR_00364	-	0.51	0.50	0.53	10	2192	10	3	6	1	10
SPR_00365	-	0.56	0.59	0.54	13	2532	14	1	10	3	9
SPR_00366	-	0.48	0.50	0.48	10	2535	14	3	8	3	10
SPR_00367	-	0.48	0.50	0.48	11	2462	14	1	11	2	11
SPR_00369	tRNA links to Rfam database...	0.52	0.57	0.48	12	2750	15	4	9	2	9
SPR_00370	tRNA links to Rfam database...	0.26	0.24	0.29	5	2758	13	1	11	1	16
SPR_00373	tRNA links to Rfam database...	0.57	0.57	0.57	12	2829	16	0	9	7	9
SPR_00374	tRNA links to Rfam database...	0.47	0.52	0.42	11	2824	16	5	10	1	10
SPR_00385	tRNA links to Rfam database...	0.56	0.60	0.52	12	4255	18	4	7	7	8
SPR_00386	tRNA links to Rfam database...	0.28	0.35	0.23	7	4156	23	8	15	0	13
SPR_00388	tRNA links to Rfam database...	0.95	0.95	0.95	20	4165	11	0	1	10	1
SPR_00389	tRNA links to Rfam database...	0.55	0.60	0.50	12	3981	22	2	10	10	8
SPR_00390	tRNA links to Rfam database...	0.79	0.81	0.77	17	4256	16	1	4	11	4
SPR_00391	tRNA links to Rfam database...	1.00	1.00	1.00	21	3807	9	0	0	9	0
SPR_00393	tRNA links to Rfam database...	0.71	0.75	0.68	15	3806	16	2	5	9	5
SPR_00394	tRNA links to Rfam database...	0.50	0.52	0.48	11	3632	16	6	6	4	10
SPR_00395	tRNA links to Rfam database...	0.22	0.24	0.21	5	3981	24	6	13	5	16
SPR_00398	-	0.35	0.38	0.33	5	2196	18	0	10	8	8
SPR_00399	-	0.67	0.75	0.60	12	2465	10	5	3	2	4
SPR_00402	tRNA links to Rfam database...	0.73	0.76	0.70	16	2533	10	2	5	3	5
SPR_00412	tRNA links to Rfam database...	0.88	0.86	0.90	18	3635	10	0	2	8	3
SPR_00414	tRNA links to Rfam database...	0.63	0.67	0.61	14	3547	11	5	4	2	7
SPR_00415	tRNA links to Rfam database...	0.37	0.38	0.36	8	3548	20	4	10	6	13
SPR_00416	tRNA links to Rfam database...	0.21	0.24	0.20	5	3545	21	5	15	1	16
SPR_00417	tRNA links to Rfam database...	0.58	0.59	0.57	13	3547	16	0	10	6	9
SPR_00418	tRNA links to Rfam database...	0.58	0.59	0.57	13	3547	16	0	10	6	9
SPR_00426	tRNA links to Rfam database...	0.57	0.57	0.57	12	2982	11	0	9	2	9
SPR_00434	tRNA links to Rfam database...	0.90	0.90	0.90	19	2829	3	0	2	1	2
SPR_00435	tRNA links to Rfam database...	0.13	0.14	0.14	3	2828	19	4	15	0	18
SPR_00436	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	3	0	0	3	0
SPR_00437	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	3	0	0	3	0
SPR_00438	tRNA links to Rfam database...	0.95	0.95	0.95	20	2754	4	0	1	3	1
SPR_00439	tRNA links to Rfam database...	-0.01	0.00	0.00	0	2677	24	4	20	0	20
SPR_00445	tRNA links to Rfam database...	0.45	0.45	0.45	9	2983	14	0	11	3	11
SPR_00452	tRNA links to Rfam database...	0.95	0.95	0.95	20	2829	2	0	1	1	1
SPR_00455	tRNA links to Rfam database...	0.74	0.76	0.73	16	2828	7	0	6	1	5
SPR_00456	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	4	0	0	4	0
SPR_00458	tRNA links to Rfam database...	0.16	0.15	0.19	3	2834	15	0	13	2	17
SPR_00459	tRNA links to Rfam database...	0.31	0.35	0.29	7	2751	17	5	12	0	13
SPR_00461	tRNA links to Rfam database...	0.45	0.47	0.43	9	2535	13	1	11	1	10
SPR_00462	tRNA links to Rfam database...	0.55	0.58	0.52	11	2394	10	4	6	0	8
SPR_00467	tRNA links to Rfam database...	0.95	0.95	0.95	19	2830	7	0	1	6	1
SPR_00476	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	4	0	0	4	0
SPR_00478	tRNA links to Rfam database...	0.71	0.71	0.71	15	2754	6	0	6	0	6
SPR_00479	tRNA links to Rfam database...	0.75	0.71	0.79	15	2831	6	0	4	2	6
SPR_00481	tRNA links to Rfam database...	0.33	0.33	0.33	7	2754	14	3	11	0	14
SPR_00482	tRNA links to Rfam database...	-0.01	0.00	0.00	0	2676	25	9	16	0	21
SPR_00483	tRNA links to Rfam database...	0.34	0.33	0.35	7	2830	15	0	13	2	14
SPR_00487	tRNA links to Rfam database...	0.20	0.18	0.24	4	2684	13	1	12	0	18
SPR_00489	tRNA links to Rfam database...	0.30	0.33	0.28	7	2676	18	4	14	0	14
SPR_00493	tRNA links to Rfam database...	0.73	0.73	0.73	16	2753	7	2	4	1	6
SPR_00496	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	4	0	0	4	0
SPR_00497	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	4	0	0	4	0
SPR_00498	tRNA links to Rfam database...	0.38	0.45	0.33	9	2976	21	5	13	3	11
SPR_00502	tRNA links to Rfam database...	0.32	0.33	0.32	7	2904	15	6	9	0	14
SPR_00504	tRNA links to Rfam database...	0.47	0.50	0.45	10	2828	13	6	6	1	10
SPR_00505	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	6	0	0	6	0
SPR_00506	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	6	0	0	6	0
SPR_00509	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	6	0	0	6	0
SPR_00512	tRNA links to Rfam database...	0.48	0.55	0.42	11	2900	17	2	13	2	9
SPR_00513	tRNA links to Rfam database...	0.23	0.25	0.23	5	2904	18	6	11	1	15
SPR_00517	tRNA links to Rfam database...	0.92	0.90	0.95	18	2831	9	0	1	8	2
SPR_00518	tRNA links to Rfam database...	0.75	0.75	0.75	15	2906	10	0	5	5	5
SPR_00519	tRNA links to Rfam database...	0.33	0.33	0.33	7	2535	14	6	8	0	14
SPR_00520	tRNA links to Rfam database...	0.27	0.33	0.23	6	2530	21	5	15	1	12
SPR_00533	tRNA links to Rfam database...	0.55	0.57	0.55	12	2753	12	3	7	2	9
SPR_00541	tRNA links to Rfam database...	1.00	1.00	1.00	21	3465	6	0	0	6	0
SPR_00542	tRNA links to Rfam database...	1.00	1.00	1.00	21	3549	8	0	0	8	0
SPR_00544	tRNA links to Rfam database...	1.00	1.00	1.00	20	3550	6	0	0	6	0
SPR_00548	tRNA links to Rfam database...	0.17	0.19	0.16	4	3378	22	3	18	1	17
SPR_00550	tRNA links to Rfam database...	0.46	0.50	0.42	11	3802	16	2	13	1	11
SPR_00552	tRNA links to Rfam database...	-0.01	0.00	0.00	0	2674	27	8	19	0	19
SPR_00557	tRNA links to Rfam database...	0.34	0.38	0.32	8	2825	17	1	16	0	13
SPR_00561	tRNA links to Rfam database...	0.35	0.38	0.33	8	2826	16	1	15	0	13
SPR_00590	tRNA links to Rfam database...	0.51	0.60	0.44	12	2976	17	3	12	2	8
SPR_00593	tRNA links to Rfam database...	0.89	0.84	0.94	16	2758	5	0	1	4	3
SPR_00595	tRNA links to Rfam database...	0.53	0.57	0.50	12	2751	14	1	11	2	9
SPR_00598	tRNA links to Rfam database...	0.74	0.76	0.73	16	2981	12	0	6	6	5
SPR_00610	tRNA links to Rfam database...	0.52	0.57	0.48	12	2531	14	0	13	1	9
SPR_00620	tRNA links to Rfam database...	0.63	0.62	0.65	13	2983	13	0	7	6	8
SPR_00629	-	0.41	0.40	0.43	6	1877	14	0	8	6	9
SPR_00632	tRNA links to Rfam database...	0.78	0.80	0.76	16	2535	9	0	5	4	4
SPR_00633	tRNA links to Rfam database...	0.31	0.35	0.28	7	2531	18	6	12	0	13
SPR_00721	tRNA links to Rfam database...	0.45	0.48	0.43	10	2903	14	0	13	1	11
SPR_00722	tRNA links to Rfam database...	0.76	0.80	0.73	16	2904	11	0	6	5	4
SPR_00750	tRNA links to Rfam database...	0.65	0.58	0.73	11	2541	4	1	3	0	8
SPR_00758	tRNA links to Rfam database...	0.68	0.71	0.65	15	2980	11	2	6	3	6
SPR_00760	tRNA links to Rfam database...	0.68	0.76	0.62	16	3544	14	5	5	4	5
SPR_00768	-	0.33	0.33	0.33	6	2062	15	0	12	3	12
SPR_00777	tRNA links to Rfam database...	0.65	0.70	0.61	14	2605	14	2	7	5	6
SPR_00810	tRNA links to Rfam database...	0.79	0.79	0.79	15	3551	10	2	2	6	4
SPR_00816	tRNA links to Rfam database...	0.95	0.95	0.95	19	3466	9	0	1	8	1
SPR_00832	-	0.34	0.33	0.36	5	1639	9	2	7	0	10
SPR_00867	tRNA links to Rfam database...	0.71	0.71	0.71	15	2905	8	2	4	2	6
SPR_00868	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	5	0	0	5	0
SPR_00882	tRNA links to Rfam database...	0.24	0.25	0.24	5	2607	17	0	16	1	15
SPR_00912	tRNA links to Rfam database...	0.93	0.90	0.95	19	2983	6	0	1	5	2
SPR_00913	tRNA links to Rfam database...	0.29	0.33	0.27	7	2977	22	3	16	3	14
SPR_00932	tRNA links to Rfam database...	0.34	0.38	0.32	8	2825	21	4	13	4	13
SPR_00938	-	0.42	0.40	0.46	6	1640	11	1	6	4	9
SPR_00943	tRNA links to Rfam database...	1.00	1.00	1.00	20	2536	6	0	0	6	0
SPR_00957	tRNA links to Rfam database...	0.58	0.57	0.60	12	2983	13	2	6	5	9
SPR_01040	tRNA links to Rfam database...	0.95	0.95	0.95	20	2754	3	0	1	2	1
SPR_01051	tRNA links to Rfam database...	0.95	0.95	0.95	20	2535	2	0	1	1	1
SPR_01088	tRNA links to Rfam database...	0.95	0.95	0.95	20	2905	4	0	1	3	1
SPR_01095	tRNA links to Rfam database...	0.71	0.71	0.71	15	2829	8	0	6	2	6
SPR_01103	-	0.51	0.53	0.50	8	1754	11	2	6	3	7
SPR_01106	tRNA links to Rfam database...	0.50	0.52	0.48	11	2533	12	2	10	0	10
SPR_01117	tRNA links to Rfam database...	0.48	0.57	0.41	12	2974	18	3	14	1	9
SPR_01143	tRNA links to Rfam database...	0.76	0.76	0.76	16	2535	7	1	4	2	5
SPR_01157	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	4	0	0	4	0
SRP_00001	Bacteria_large_SRP links to Rfam database...	0.80	0.75	0.86	30	6751	10	1	4	5	10
SRP_00005	-	0.49	0.46	0.52	11	3984	19	2	8	9	13
SRP_00007	-	0.00	0.00	0.00	0	11878	57	7	50	0	45
SRP_00008	Bacteria_small_SRP links to Rfam database...	0.55	0.60	0.52	15	2897	14	4	10	0	10
SRP_00020	Bacteria_small_SRP links to Rfam database...	0.93	0.94	0.91	31	5531	12	1	2	9	2
SRP_00038	Bacteria_small_SRP links to Rfam database...	0.33	0.33	0.34	11	5018	26	1	20	5	22
SRP_00040	Bacteria_small_SRP links to Rfam database...	0.58	0.61	0.56	19	5531	24	0	15	9	12
SRP_00042	Bacteria_small_SRP links to Rfam database...	0.32	0.36	0.30	9	3975	23	5	16	2	16
SRP_00043	Bacteria_small_SRP links to Rfam database...	0.47	0.48	0.47	14	5020	23	3	13	7	15
SRP_00044	Bacteria_small_SRP links to Rfam database...	0.86	0.84	0.87	27	6074	14	1	3	10	5
SRP_00045	-	0.36	0.39	0.33	17	11884	36	6	28	2	27
SRP_00046	Bacteria_small_SRP links to Rfam database...	0.53	0.53	0.53	17	4721	18	1	14	3	15
SRP_00051	Bacteria_small_SRP links to Rfam database...	0.93	0.93	0.93	28	5430	12	0	2	10	2
SRP_00054	Bacteria_small_SRP links to Rfam database...	0.62	0.63	0.63	20	5533	18	0	12	6	12
SRP_00056	Bacteria_small_SRP links to Rfam database...	0.77	0.78	0.76	29	6403	15	1	8	6	8
SRP_00057	Bacteria_small_SRP links to Rfam database...	0.38	0.40	0.36	14	6289	27	2	23	2	21
SRP_00058	Bacteria_small_SRP links to Rfam database...	0.93	0.94	0.91	32	5743	12	1	2	9	2
SRP_00067	Bacteria_small_SRP links to Rfam database...	0.43	0.47	0.40	18	5733	27	4	23	0	20
SRP_00072	Bacteria_small_SRP links to Rfam database...	0.65	0.66	0.66	19	6299	20	2	8	10	10
SRP_00074	Bacteria_small_SRP links to Rfam database...	0.09	0.10	0.09	3	6521	35	5	26	4	26
SRP_00075	Bacteria_small_SRP links to Rfam database...	0.85	0.85	0.85	29	5531	15	0	5	10	5
SRP_00077	Bacteria_small_SRP links to Rfam database...	0.57	0.59	0.55	22	6630	24	1	17	6	15
SRP_00081	Bacteria_small_SRP links to Rfam database...	0.57	0.61	0.54	19	5530	21	2	14	5	12
SRP_00083	-	0.64	0.67	0.63	20	4819	14	4	8	2	10
SRP_00084	Bacteria_small_SRP links to Rfam database...	0.75	0.76	0.74	26	5425	15	1	8	6	8
SRP_00093	-	0.16	0.20	0.14	5	14160	43	10	21	12	20
SRP_00094	Bacteria_small_SRP links to Rfam database...	0.08	0.08	0.09	2	4072	22	1	20	1	22
SRP_00095	Bacteria_small_SRP links to Rfam database...	0.24	0.28	0.22	7	3973	26	6	19	1	18
SRP_00098	Bacteria_small_SRP links to Rfam database...	0.72	0.76	0.68	28	6400	20	1	12	7	9
SRP_00101	-	0.76	0.76	0.76	19	3545	13	0	6	7	6
SRP_00105	Bacteria_small_SRP links to Rfam database...	0.18	0.18	0.19	6	5533	26	3	23	0	28
SRP_00106	Bacteria_large_SRP links to Rfam database...	0.64	0.72	0.58	18	5222	23	5	8	10	7
SRP_00107	Bacteria_small_SRP links to Rfam database...	0.30	0.37	0.25	7	3627	30	4	17	9	12
SRP_00119	-	0.33	0.33	0.33	17	12990	38	0	34	4	34
SRP_00121	Bacteria_small_SRP links to Rfam database...	0.59	0.60	0.58	15	4252	16	1	10	5	10
SRP_00128	Bacteria_small_SRP links to Rfam database...	0.69	0.72	0.67	26	6747	18	1	12	5	10
SRP_00132	Bacteria_small_SRP links to Rfam database...	0.64	0.66	0.63	19	4821	18	0	11	7	10
SRP_00134	Bacteria_large_SRP links to Rfam database...	0.71	0.76	0.67	22	5962	19	3	8	8	7
SRP_00135	-	0.11	0.12	0.10	6	14307	52	8	44	0	45
SRP_00137	Bacteria_small_SRP links to Rfam database...	0.35	0.40	0.31	10	4154	22	7	15	0	15
SRP_00138	-	1.00	1.00	1.00	27	3978	10	0	0	10	0
SRP_00139	-	0.17	0.25	0.13	3	2122	20	9	11	0	9
SRP_00140	-	0.86	0.85	0.87	33	8477	17	1	4	12	6
SRP_00141	Bacteria_small_SRP links to Rfam database...	0.89	0.90	0.88	37	6286	11	1	4	6	4
SRP_00145	Bacteria_small_SRP links to Rfam database...	0.23	0.23	0.24	9	6291	28	1	27	0	31
SRP_00146	Bacteria_small_SRP links to Rfam database...	0.24	0.22	0.28	8	5224	21	1	20	0	28
SRP_00161	Bacteria_small_SRP links to Rfam database...	0.45	0.45	0.45	10	2828	15	0	12	3	12
SRP_00162	Bacteria_small_SRP links to Rfam database...	0.50	0.52	0.48	12	2901	15	1	12	2	11
SRP_00163	Bacteria_small_SRP links to Rfam database...	0.63	0.65	0.61	17	3458	16	2	9	5	9
SRP_00164	Bacteria_small_SRP links to Rfam database...	0.96	0.97	0.94	34	6867	15	1	1	13	1
SRP_00170	Bacteria_small_SRP links to Rfam database...	0.32	0.36	0.29	9	4064	23	6	16	1	16
SRP_00193	-	0.38	0.36	0.41	13	6871	25	1	18	6	23
SRP_00194	Bacteria_small_SRP links to Rfam database...	0.31	0.33	0.29	7	3216	17	6	11	0	14
SRP_00196	-	0.56	0.57	0.55	16	4627	20	1	12	7	12
SRP_00200	Bacteria_small_SRP links to Rfam database...	0.34	0.33	0.35	12	6869	30	0	22	8	24
SRP_00209	Bacteria_small_SRP links to Rfam database...	0.52	0.56	0.50	15	4626	17	3	12	2	12
SRP_00213	Bacteria_small_SRP links to Rfam database...	0.35	0.40	0.31	10	4154	22	6	16	0	15
SRP_00214	-	0.51	0.54	0.48	13	3054	17	2	12	3	11
SRP_00215	Bacteria_small_SRP links to Rfam database...	0.82	0.80	0.83	20	3216	10	0	4	6	5
SRP_00216	Bacteria_small_SRP links to Rfam database...	0.58	0.59	0.57	16	3375	17	2	10	5	11
SRP_00217	Bacteria_small_SRP links to Rfam database...	0.26	0.29	0.25	7	3293	22	4	17	1	17
SRP_00219	Bacteria_small_SRP links to Rfam database...	0.91	0.91	0.91	21	3298	10	0	2	8	2
SRP_00221	-	0.62	0.67	0.58	14	3379	16	3	7	6	7
SRP_00222	Bacteria_small_SRP links to Rfam database...	0.28	0.28	0.29	7	3057	17	2	15	0	18
SRP_00223	-	0.38	0.40	0.36	8	3381	17	4	10	3	12
SRP_00227	Bacteria_small_SRP links to Rfam database...	0.81	0.81	0.81	25	5120	12	1	5	6	6
SRP_00229	Bacteria_small_SRP links to Rfam database...	0.28	0.30	0.28	8	5224	23	1	20	2	19
SRP_00231	Bacteria_small_SRP links to Rfam database...	0.64	0.65	0.65	22	5426	15	1	11	3	12
SRP_00233	Bacteria_small_SRP links to Rfam database...	0.79	0.73	0.86	24	5123	10	0	4	6	9
SRP_00235	-	0.68	0.70	0.68	23	5016	17	0	11	6	10
SRP_00243	Bacteria_small_SRP links to Rfam database...	0.48	0.45	0.52	14	5124	16	2	11	3	17
SRP_00244	Bacteria_small_SRP links to Rfam database...	0.42	0.41	0.43	16	6866	21	1	20	0	23
SRP_00245	-	0.57	0.64	0.52	14	13014	43	2	11	30	8
SRP_00250	Bacteria_small_SRP links to Rfam database...	0.75	0.78	0.72	28	6747	21	1	10	10	8
SRP_00251	Bacteria_small_SRP links to Rfam database...	0.68	0.72	0.65	26	6981	20	1	13	6	10
SRP_00256	-	-0.01	0.00	0.00	0	4247	32	8	23	1	22
SRP_00266	Bacteria_small_SRP links to Rfam database...	0.69	0.66	0.73	19	4630	12	0	7	5	10
SRP_00268	Bacteria_small_SRP links to Rfam database...	0.36	0.37	0.36	10	4158	22	2	16	4	17
SRP_00269	Bacteria_small_SRP links to Rfam database...	0.31	0.30	0.33	10	5020	22	3	17	2	23
SRP_00270	Bacteria_small_SRP links to Rfam database...	0.40	0.39	0.41	12	4627	18	2	15	1	19
SRP_00271	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	3208	32	3	29	0	24
SRP_00273	Bacteria_small_SRP links to Rfam database...	0.85	0.83	0.87	33	6748	13	1	4	8	7
SRP_00274	Bacteria_small_SRP links to Rfam database...	0.68	0.68	0.68	26	6865	17	0	12	5	12
SRP_00284	-	0.44	0.45	0.45	13	3712	17	3	13	1	16
SRP_00285	Bacteria_small_SRP links to Rfam database...	0.61	0.53	0.70	16	3718	12	0	7	5	14
SRP_00295	Bacteria_small_SRP links to Rfam database...	0.96	0.97	0.95	37	6864	11	1	1	9	1
SRP_00303	Bacteria_small_SRP links to Rfam database...	0.69	0.69	0.69	22	6638	19	0	10	9	10
SRP_00307	-	0.33	0.35	0.32	15	12833	36	9	23	4	28
SRP_00310	Bacteria_small_SRP links to Rfam database...	0.75	0.74	0.77	17	2904	10	0	5	5	6
SRP_00312	Bacteria_small_SRP links to Rfam database...	0.34	0.37	0.32	10	4155	24	4	17	3	17
SRP_00315	Bacteria_small_SRP links to Rfam database...	0.46	0.48	0.46	11	2902	18	0	13	5	12
SRP_00318	Bacteria_small_SRP links to Rfam database...	0.47	0.48	0.48	11	2980	16	1	11	4	12
SRP_00324	Bacteria_small_SRP links to Rfam database...	0.57	0.62	0.53	18	5322	23	6	10	7	11
SRP_00325	Bacteria_small_SRP links to Rfam database...	0.77	0.73	0.83	24	4342	13	0	5	8	9
SRP_00326	Bacteria_small_SRP links to Rfam database...	0.18	0.19	0.18	6	5017	31	2	25	4	25
SRP_00333	Bacteria_small_SRP links to Rfam database...	0.76	0.68	0.85	23	5124	11	0	4	7	11
SRP_00338	Bacteria_small_SRP links to Rfam database...	0.94	0.94	0.94	34	5424	9	0	2	7	2
SRP_00341	Bacteria_small_SRP links to Rfam database...	0.43	0.45	0.41	14	4719	25	0	20	5	17
SRP_00342	Bacteria_small_SRP links to Rfam database...	0.57	0.60	0.56	15	3978	19	1	11	7	10
SRP_00350	Bacteria_small_SRP links to Rfam database...	0.32	0.33	0.32	9	3888	20	6	13	1	18
SRP_00356	Bacteria_small_SRP links to Rfam database...	0.43	0.40	0.46	12	5024	22	1	13	8	18
SRP_00357	Bacteria_small_SRP links to Rfam database...	0.94	0.94	0.94	34	5320	8	1	1	6	2
SRP_00358	Bacteria_small_SRP links to Rfam database...	0.87	0.89	0.86	31	6292	15	1	4	10	4
SRP_00363	Bacteria_small_SRP links to Rfam database...	0.43	0.40	0.48	12	4728	17	3	10	4	18
SRP_00365	Bacteria_small_SRP links to Rfam database...	0.89	0.89	0.89	24	3376	10	0	3	7	3
SRP_00367	Bacteria_small_SRP links to Rfam database...	0.96	0.97	0.94	34	6750	11	1	1	9	1
SRP_00369	Bacteria_small_SRP links to Rfam database...	0.89	0.89	0.89	31	5743	11	1	3	7	4
SRP_00383	Bacteria_small_SRP links to Rfam database...	0.53	0.54	0.52	13	3215	18	2	10	6	11
TMR_00272	-	0.98	0.97	1.00	30	5121	6	0	0	6	1

^top

Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.

Table of contents:

Overview

Performance plots

Performance of PknotsRG - scored higher in this pairwise comparison

1. Total counts & total scores for PknotsRG

2. Individual counts for PknotsRG [ download as .csv ]

Performance of RNAwolf - scored lower in this pairwise comparison

1. Total counts & total scores for RNAwolf

2. Individual counts for RNAwolf [ download as .csv ]