CompaRNA - on-line benchmarks of RNA structure prediction methods

Laboratory of Structural Bioinformatics @ Adam Mickiewicz University in Poznan

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Overview

Metric	RDfolder		MCFold
MCC	0.515	>	0.468
Average MCC ± 95% Confidence Intervals	0.518 ± 0.029	<	0.528 ± 0.028
Sensitivity	0.457	<	0.524
Positive Predictive Value	0.589	>	0.428
Total TP	5187	<	5951
Total TN	1189319	>	1184217
Total FP	3907	<	9677
Total FP CONTRA	499	<	1368
Total FP INCONS	3116	<	6585
Total FP COMP	292	<	1724
Total FN	6165	>	5401
P-value	3.56938820447e-08

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Performance plots

Comparison of performance of RDfolder and MCFold. Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data (individual counts for RDfolder and MCFold).
Average Matthews Correlation Coefficients (MCC) with 95% confidence intervals (CIs) were plotted for different RNA families, for which at least 3 members were present in the benchmarking dataset. 'n' denotes the number of MCCs used to calculate the average and CI. See tables below for raw data (individual counts for RDfolder and MCFold).
Comparison of average Matthews Correlation Coefficients (MCCs) for RDfolder and MCFold. The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data (individual counts for RDfolder and MCFold).

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Performance of RDfolder - scored higher in this pairwise comparison

1. Total counts & total scores for RDfolder

Total Base Pair Counts
Total TP	5187
Total TN	1189319
Total FP	3907
Total FP CONTRA	499
Total FP INCONS	3116
Total FP COMP	292
Total FN	6165

Total Scores
MCC	0.515
Average MCC ± 95% Confidence Intervals	0.518 ± 0.029
Sensitivity	0.457
Positive Predictive Value	0.589
Nr of predictions	649

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2. Individual counts for RDfolder [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
NDB_00014	-	0.89	0.80	1.00	8	182	0	0	0	0	2
NDB_00015	-	0.38	0.40	0.40	4	266	6	0	6	0	6
NDB_00016	-	0.91	0.83	1.00	10	266	0	0	0	0	2
NDB_00047	-	0.91	0.83	1.00	10	266	0	0	0	0	2
NDB_00048	-	-0.02	0.00	0.00	0	1514	26	0	26	0	28
NDB_00049	-	0.92	0.85	1.00	11	314	0	0	0	0	2
NDB_00051	tRNA links to Rfam database...	0.84	0.71	1.00	17	2758	0	0	0	0	7
PDB_00001	-	-0.02	0.00	0.00	0	272	4	0	4	0	12
PDB_00002	-	0.71	0.63	0.83	5	204	1	0	1	0	3
PDB_00003	-	0.81	0.67	1.00	8	343	0	0	0	0	4
PDB_00004	-	0.79	0.63	1.00	12	808	0	0	0	0	7
PDB_00005	Tymo_tRNA-like links to Rfam database...	0.88	0.79	1.00	11	935	0	0	0	0	3
PDB_00006	-	1.00	1.00	1.00	14	689	0	0	0	0	0
PDB_00011	-	0.91	0.83	1.00	10	266	0	0	0	0	2
PDB_00012	mir-TAR links to Rfam database...	1.00	1.00	1.00	7	399	3	0	0	3	0
PDB_00013	-	-0.02	0.00	0.00	0	400	6	1	5	0	10
PDB_00017	-	0.77	0.60	1.00	9	694	0	0	0	0	6
PDB_00018	-	0.20	0.20	0.22	4	1017	14	2	12	0	16
PDB_00019	-	0.70	0.50	1.00	4	249	0	0	0	0	4
PDB_00020	-	0.41	0.35	0.50	7	766	7	0	7	0	13
PDB_00021	-	1.00	1.00	1.00	8	182	0	0	0	0	0
PDB_00022	-	0.94	0.89	1.00	8	245	0	0	0	0	1
PDB_00032	-	0.63	0.40	1.00	6	897	1	0	0	1	9
PDB_00034	-	-0.02	0.00	0.00	0	375	3	0	3	0	12
PDB_00035	-	0.81	0.67	1.00	6	204	0	0	0	0	3
PDB_00036	-	-0.01	0.00	0.00	0	3470	25	0	16	9	27
PDB_00040	-	0.37	0.30	0.50	3	270	3	0	3	0	7
PDB_00041	-	0.70	0.50	1.00	6	624	0	0	0	0	6
PDB_00043	-	0.78	0.62	1.00	8	427	0	0	0	0	5
PDB_00048	-	1.00	1.00	1.00	9	291	1	0	0	1	0
PDB_00049	-	0.62	0.40	1.00	4	227	0	0	0	0	6
PDB_00053	-	0.67	0.45	1.00	5	430	0	0	0	0	6
PDB_00054	-	-0.04	0.00	0.00	0	184	6	0	6	0	10
PDB_00056	-	0.93	0.88	1.00	14	616	0	0	0	0	2
PDB_00057	-	0.70	0.50	1.00	5	346	1	0	0	1	5
PDB_00065	-	-0.02	0.00	0.00	0	402	4	1	3	0	10
PDB_00070	tRNA links to Rfam database...	0.31	0.29	0.35	7	2830	13	0	13	0	17
PDB_00074	-	-0.02	0.00	0.00	0	371	7	0	7	0	12
PDB_00081	-	0.94	0.89	1.00	8	182	0	0	0	0	1
PDB_00088	-	0.86	0.75	1.00	9	426	1	0	0	1	3
PDB_00096	-	0.57	0.33	1.00	4	321	0	0	0	0	8
PDB_00098	-	0.81	0.67	1.00	4	227	0	0	0	0	2
PDB_00102	-	0.93	0.88	1.00	7	224	0	0	0	0	1
PDB_00104	-	-0.02	0.00	0.00	0	621	9	0	9	0	16
PDB_00107	-	0.95	0.91	1.00	10	455	1	0	0	1	1
PDB_00108	-	0.84	0.71	1.00	5	205	0	0	0	0	2
PDB_00110	-	1.00	1.00	1.00	7	246	0	0	0	0	0
PDB_00113	-	0.94	0.89	1.00	8	223	0	0	0	0	1
PDB_00115	-	-0.02	0.00	0.00	0	549	12	0	12	0	16
PDB_00116	-	0.70	0.50	1.00	3	228	0	0	0	0	3
PDB_00119	-	0.95	0.90	1.00	9	244	0	0	0	0	1
PDB_00120	-	0.95	0.90	1.00	9	222	0	0	0	0	1
PDB_00121	-	0.95	0.90	1.00	9	222	0	0	0	0	1
PDB_00122	-	0.91	0.83	1.00	10	290	0	0	0	0	2
PDB_00123	-	0.75	0.61	0.92	22	4162	2	2	0	0	14
PDB_00124	-	0.70	0.50	1.00	5	491	0	0	0	0	5
PDB_00125	-	-0.03	0.00	0.00	0	227	4	0	4	0	10
PDB_00128	-	0.84	0.71	1.00	10	486	0	0	0	0	4
PDB_00130	-	1.00	1.00	1.00	6	270	0	0	0	0	0
PDB_00132	-	-0.01	0.00	0.00	0	432	3	0	3	0	12
PDB_00134	-	0.79	0.63	1.00	5	373	0	0	0	0	3
PDB_00136	-	0.71	0.54	0.93	14	2400	1	0	1	0	12
PDB_00137	-	0.87	0.77	1.00	10	396	0	0	0	0	3
PDB_00138	-	0.79	0.63	1.00	5	373	0	0	0	0	3
PDB_00142	-	-0.02	0.00	0.00	0	431	4	0	4	0	12
PDB_00149	-	0.62	0.53	0.73	8	692	3	0	3	0	7
PDB_00150	-	0.66	0.60	0.75	6	292	3	0	2	1	4
PDB_00152	-	0.93	0.88	1.00	7	183	0	0	0	0	1
PDB_00153	-	0.77	0.60	1.00	6	247	0	0	0	0	4
PDB_00155	-	-0.02	0.00	0.00	0	321	4	0	4	0	8
PDB_00157	-	-0.01	0.00	0.00	0	3310	11	1	10	0	29
PDB_00158	-	0.63	0.40	1.00	8	853	0	0	0	0	12
PDB_00159	-	-0.02	0.00	0.00	0	347	4	0	4	0	11
PDB_00160	-	0.94	0.89	1.00	8	268	0	0	0	0	1
PDB_00168	-	0.81	0.67	1.00	4	296	1	0	0	1	2
PDB_00169	-	0.43	0.40	0.50	4	223	4	0	4	0	6
PDB_00170	-	0.93	0.88	1.00	14	616	0	0	0	0	2
PDB_00171	-	0.70	0.50	1.00	6	429	0	0	0	0	6
PDB_00174	-	-0.02	0.00	0.00	0	1021	14	0	14	0	22
PDB_00175	-	-0.01	0.00	0.00	0	4536	24	1	23	0	36
PDB_00178	-	0.39	0.36	0.44	4	519	5	1	4	0	7
PDB_00181	-	0.88	0.78	1.00	7	224	0	0	0	0	2
PDB_00182	-	0.88	0.78	1.00	7	246	0	0	0	0	2
PDB_00183	-	-0.01	0.00	0.00	0	1471	14	0	14	0	23
PDB_00184	-	0.87	0.77	1.00	10	551	0	0	0	0	3
PDB_00185	-	0.33	0.32	0.36	9	2901	16	4	12	0	19
PDB_00190	-	0.95	0.90	1.00	9	222	0	0	0	0	1
PDB_00192	-	0.26	0.14	0.50	5	3230	5	0	5	0	31
PDB_00195	-	-0.01	0.00	0.00	0	3456	30	0	30	0	42
PDB_00196	-	0.92	0.86	1.00	24	1572	0	0	0	0	4
PDB_00197	-	0.92	0.86	1.00	6	294	3	0	0	3	1
PDB_00200	-	0.81	0.67	1.00	6	204	0	0	0	0	3
PDB_00201	-	0.77	0.60	1.00	6	319	0	0	0	0	4
PDB_00202	-	0.71	0.57	0.89	8	552	2	0	1	1	6
PDB_00203	-	0.96	0.92	1.00	12	549	0	0	0	0	1
PDB_00205	-	0.80	0.64	1.00	9	426	0	0	0	0	5
PDB_00206	-	0.79	0.63	1.00	5	271	0	0	0	0	3
PDB_00207	-	0.92	0.86	1.00	12	366	0	0	0	0	2
PDB_00209	-	0.67	0.45	1.00	5	556	0	0	0	0	6
PDB_00211	-	0.89	0.80	1.00	8	182	0	0	0	0	2
PDB_00214	-	0.73	0.55	1.00	6	400	0	0	0	0	5
PDB_00215	-	-0.02	0.00	0.00	0	1106	22	0	22	0	24
PDB_00219	-	1.00	1.00	1.00	7	203	0	0	0	0	0
PDB_00221	-	0.49	0.44	0.57	4	246	3	0	3	0	5
PDB_00224	-	0.93	0.88	1.00	7	183	0	0	0	0	1
PDB_00229	tRNA links to Rfam database...	0.96	0.91	1.00	21	2754	0	0	0	0	2
PDB_00234	-	-0.04	0.00	0.00	0	268	8	0	8	0	12
PDB_00236	-	-0.02	0.00	0.00	0	1110	18	0	18	0	24
PDB_00237	-	0.81	0.67	1.00	6	372	1	0	0	1	3
PDB_00239	-	-0.01	0.00	0.00	0	815	5	0	5	0	18
PDB_00243	-	0.63	0.58	0.70	7	620	3	0	3	0	5
PDB_00248	-	0.81	0.67	1.00	8	268	0	0	0	0	4
PDB_00249	-	0.00	0.00	0.00	0	276	0	0	0	0	11
PDB_00250	-	0.85	0.76	0.95	19	1750	1	0	1	0	6
PDB_00252	-	0.97	0.93	1.00	14	766	2	0	0	2	1
PDB_00254	-	-0.04	0.00	0.00	0	266	10	0	10	0	12
PDB_00256	-	-0.02	0.00	0.00	0	319	6	6	0	0	4
PDB_00257	-	0.79	0.64	1.00	7	344	0	0	0	0	4
PDB_00258	-	1.00	1.00	1.00	8	245	0	0	0	0	0
PDB_00261	-	-0.03	0.00	0.00	0	486	10	0	10	0	16
PDB_00262	-	0.25	0.25	0.27	6	1106	16	0	16	0	18
PDB_00264	-	-0.01	0.00	0.00	0	1119	9	0	9	0	18
PDB_00267	-	-0.03	0.00	0.00	0	366	12	0	12	0	14
PDB_00286	-	-0.03	0.00	0.00	0	184	8	0	6	2	6
PDB_00293	-	-0.01	0.00	0.00	0	1114	14	8	6	0	12
PDB_00312	-	1.00	1.00	1.00	9	426	0	0	0	0	0
PDB_00313	tRNA links to Rfam database...	0.39	0.37	0.41	7	2684	10	2	8	0	12
PDB_00317	-	1.00	1.00	1.00	10	368	0	0	0	0	0
PDB_00326	-	0.68	0.46	1.00	13	3728	0	0	0	0	15
PDB_00339	-	-0.01	0.00	0.00	0	662	4	0	4	0	16
PDB_00341	-	0.52	0.44	0.64	7	692	4	0	4	0	9
PDB_00342	-	-0.02	0.00	0.00	0	762	18	0	18	0	10
PDB_00343	-	-0.01	0.00	0.00	0	1582	14	0	14	0	21
PDB_00347	-	0.70	0.50	1.00	10	1166	0	0	0	0	10
PDB_00349	-	-0.01	0.00	0.00	0	936	10	0	10	0	14
PDB_00351	-	-0.02	0.00	0.00	0	555	6	0	6	0	12
PDB_00352	-	0.48	0.37	0.64	7	1214	4	0	4	0	12
PDB_00357	-	0.89	0.80	1.00	8	772	0	0	0	0	2
PDB_00362	tRNA links to Rfam database...	0.98	0.95	1.00	21	2829	0	0	0	0	1
PDB_00365	-	0.96	0.93	1.00	13	422	0	0	0	0	1
PDB_00371	-	0.81	0.67	1.00	10	551	0	0	0	0	5
PDB_00377	-	1.00	1.00	1.00	12	516	0	0	0	0	0
PDB_00378	-	0.88	0.79	1.00	11	692	0	0	0	0	3
PDB_00392	tRNA links to Rfam database...	0.53	0.48	0.59	10	2833	7	2	5	0	11
PDB_00400	-	-0.01	0.00	0.00	0	3144	16	0	16	0	34
PDB_00402	tRNA links to Rfam database...	0.47	0.39	0.56	9	2759	7	0	7	0	14
PDB_00411	-	0.54	0.47	0.64	7	584	4	0	4	0	8
PDB_00420	-	0.38	0.30	0.50	3	490	6	0	3	3	7
PDB_00425	tRNA links to Rfam database...	0.93	0.86	1.00	19	2682	0	0	0	0	3
PDB_00430	tRNA links to Rfam database...	0.74	0.68	0.81	17	3219	4	2	2	0	8
PDB_00431	tRNA links to Rfam database...	0.40	0.30	0.55	6	2200	5	0	5	0	14
PDB_00454	-	0.87	0.81	0.93	26	2673	2	0	2	0	6
PDB_00474	tRNA links to Rfam database...	0.40	0.39	0.43	9	2680	14	1	11	2	14
PDB_00481	-	0.73	0.54	1.00	14	1877	0	0	0	0	12
PDB_00513	-	1.00	1.00	1.00	7	224	0	0	0	0	0
PDB_00522	-	0.20	0.17	0.27	3	1117	8	0	8	0	15
PDB_00526	-	-0.01	0.00	0.00	0	296	4	1	3	0	3
PDB_00527	-	-0.01	0.00	0.00	0	296	4	1	3	0	5
PDB_00537	-	0.88	0.78	1.00	7	399	0	0	0	0	2
PDB_00553	mir-TAR links to Rfam database...	1.00	1.00	1.00	11	454	0	0	0	0	0
PDB_00570	-	-0.01	0.00	0.00	0	2266	12	1	11	0	22
PDB_00571	tRNA links to Rfam database...	0.39	0.36	0.43	9	3300	12	0	12	0	16
PDB_00584	-	0.36	0.29	0.45	5	1474	6	0	6	0	12
PDB_00599	-	0.45	0.43	0.50	6	549	6	0	6	0	8
PDB_00603	-	0.95	0.90	1.00	9	244	0	0	0	0	1
PDB_00611	-	-0.01	0.00	0.00	0	775	5	1	4	0	11
PDB_00617	-	0.89	0.80	1.00	8	268	0	0	0	0	2
PDB_00627	-	0.78	0.71	0.86	12	1639	4	0	2	2	5
PDB_00629	-	-0.01	0.00	0.00	0	1642	11	1	10	0	23
PDB_00637	-	0.90	0.90	0.90	19	2325	4	0	2	2	2
PDB_00648	-	0.92	0.92	0.92	12	848	1	0	1	0	1
PDB_00663	-	-0.01	0.00	0.00	0	935	11	5	6	0	10
PDB_00667	tRNA links to Rfam database...	0.93	0.86	1.00	19	2831	2	0	0	2	3
PDB_00681	-	-0.01	0.00	0.00	0	1256	19	2	17	0	19
PDB_00682	-	-0.03	0.00	0.00	0	483	13	0	13	0	16
PDB_00686	-	0.94	0.89	1.00	17	686	0	0	0	0	2
PDB_00687	-	0.54	0.50	0.60	6	620	4	2	2	0	6
PDB_00692	-	-0.01	0.00	0.00	0	1222	3	0	3	0	20
PDB_00693	-	0.94	0.88	1.00	15	1161	0	0	0	0	2
PDB_00698	-	0.94	0.89	1.00	17	844	0	0	0	0	2
PDB_00705	-	1.00	1.00	1.00	8	245	1	0	0	1	0
PDB_00709	-	0.24	0.19	0.33	3	771	6	0	6	0	13
PDB_00710	-	0.00	0.00	0.00	0	780	0	0	0	0	16
PDB_00713	-	0.46	0.43	0.50	9	1998	9	0	9	0	12
PDB_00716	HDV_ribozyme links to Rfam database...	-0.01	0.00	0.00	0	2684	18	1	16	1	23
PDB_00724	-	-0.01	0.00	0.00	0	2123	22	0	22	0	29
PDB_00725	-	0.89	0.80	1.00	12	583	0	0	0	0	3
PDB_00726	-	-0.01	0.00	0.00	0	348	3	0	3	0	9
PDB_00727	-	1.00	1.00	1.00	7	554	2	0	0	2	0
PDB_00728	-	0.97	0.93	1.00	14	482	0	0	0	0	1
PDB_00732	-	0.33	0.30	0.38	9	2979	16	0	15	1	21
PDB_00733	-	0.23	0.23	0.25	7	2898	22	1	20	1	23
PDB_00734	-	0.62	0.40	1.00	4	227	0	0	0	0	6
PDB_00737	-	0.85	0.73	1.00	8	343	0	0	0	0	3
PDB_00740	-	-0.02	0.00	0.00	0	228	3	0	3	0	11
PDB_00741	Entero_5_CRE links to Rfam database...	0.84	0.71	1.00	12	691	0	0	0	0	5
PDB_00751	-	0.87	0.77	1.00	10	585	2	0	0	2	3
PDB_00754	-	1.00	1.00	1.00	12	1473	3	0	0	3	0
PDB_00767	-	1.00	1.00	1.00	20	2191	4	0	0	4	0
PDB_00800	-	0.31	0.31	0.32	9	2052	19	0	19	0	20
PDB_00806	-	-0.01	0.00	0.00	0	1822	8	0	8	0	25
PDB_00807	-	0.39	0.26	0.60	6	1881	5	0	4	1	17
PDB_00809	-	0.88	0.79	1.00	11	485	0	0	0	0	3
PDB_00810	s2m links to Rfam database...	-0.01	0.00	0.00	0	1078	3	0	3	0	17
PDB_00815	-	0.74	0.56	1.00	5	625	1	0	0	1	4
PDB_00823	-	-0.03	0.00	0.00	0	186	4	0	4	0	9
PDB_00828	Purine links to Rfam database...	0.88	0.78	1.00	21	2464	0	0	0	0	6
PDB_00829	Purine links to Rfam database...	0.86	0.75	1.00	18	2260	0	0	0	0	6
PDB_00842	-	0.79	0.63	1.00	5	373	0	0	0	0	3
PDB_00851	-	0.11	0.10	0.15	4	4726	23	0	23	0	37
PDB_00855	-	1.00	1.00	1.00	10	455	1	0	0	1	0
PDB_00857	-	0.77	0.60	1.00	9	1072	0	0	0	0	6
PDB_00863	-	0.78	0.61	1.00	11	979	0	0	0	0	7
PDB_00865	-	0.96	0.92	1.00	11	340	0	0	0	0	1
PDB_00868	-	1.00	1.00	1.00	14	1312	0	0	0	0	0
PDB_00870	-	-0.02	0.00	0.00	0	1109	19	0	19	0	16
PDB_00871	-	-0.02	0.00	0.00	0	1106	22	0	22	0	24
PDB_00873	-	-0.01	0.00	0.00	0	4514	46	0	46	0	48
PDB_00874	-	0.10	0.10	0.13	2	931	13	2	11	0	18
PDB_00876	HIV_FE links to Rfam database...	0.97	0.95	1.00	19	971	0	0	0	0	1
PDB_00878	-	-0.02	0.00	0.00	0	486	10	0	10	0	12
PDB_00883	-	-0.02	0.00	0.00	0	620	10	0	10	0	12
PDB_00885	-	0.94	0.89	1.00	16	804	0	0	0	0	2
PDB_00886	-	0.37	0.35	0.41	14	4152	20	0	20	0	26
PDB_00890	-	-0.02	0.00	0.00	0	691	12	2	10	0	14
PDB_00891	-	0.97	0.93	1.00	14	932	0	0	0	0	1
PDB_00892	-	0.00	0.00	0.00	0	2556	0	0	0	0	15
PDB_00918	-	0.75	0.57	1.00	4	321	0	0	0	0	3
PDB_00923	-	1.00	1.00	1.00	6	184	0	0	0	0	0
PDB_00924	-	0.91	0.83	1.00	30	3625	0	0	0	0	6
PDB_00925	-	0.90	0.82	1.00	9	342	0	0	0	0	2
PDB_00928	-	0.79	0.63	1.00	5	295	0	0	0	0	3
PDB_00929	-	-0.02	0.00	0.00	0	763	17	0	17	0	20
PDB_00932	-	-0.01	0.00	0.00	0	813	7	1	6	0	13
PDB_00937	-	0.94	0.89	1.00	16	614	0	0	0	0	2
PDB_00943	-	0.32	0.27	0.40	4	1421	6	0	6	0	11
PDB_00945	-	0.70	0.50	1.00	5	460	0	0	0	0	5
PDB_00960	-	-0.03	0.00	0.00	0	394	12	2	10	0	10
PDB_00961	-	1.00	1.00	1.00	10	1760	1	0	0	1	0
PDB_00964	-	0.88	0.78	1.00	7	623	2	0	0	2	2
PDB_00966	-	-0.03	0.00	0.00	0	244	9	2	7	0	7
PDB_00973	-	0.40	0.25	0.67	2	348	1	0	1	0	6
PDB_00974	-	0.57	0.33	1.00	3	375	0	0	0	0	6
PDB_00986	-	0.88	0.79	1.00	11	424	0	0	0	0	3
PDB_00987	-	0.79	0.63	1.00	10	551	0	0	0	0	6
PDB_01001	tRNA links to Rfam database...	0.39	0.28	0.56	5	2136	4	0	4	0	13
PDB_01002	tRNA links to Rfam database...	0.22	0.19	0.27	4	2760	12	0	11	1	17
PDB_01008	-	1.00	1.00	1.00	12	583	0	0	0	0	0
PDB_01009	tRNA links to Rfam database...	0.37	0.33	0.41	7	2468	10	0	10	0	14
PDB_01017	-	-0.03	0.00	0.00	0	422	13	0	13	0	14
PDB_01019	-	-0.03	0.00	0.00	0	422	13	0	13	0	14
PDB_01020	Purine links to Rfam database...	0.86	0.74	1.00	17	2261	1	0	0	1	6
PDB_01025	-	1.00	1.00	1.00	9	244	0	0	0	0	0
PDB_01035	-	0.96	0.92	1.00	24	1516	0	0	0	0	2
PDB_01040	-	0.30	0.30	0.32	6	1109	13	0	13	0	14
PDB_01044	-	1.00	1.00	1.00	16	930	3	0	0	3	0
PDB_01045	-	0.98	0.96	1.00	22	1203	1	0	0	1	1
PDB_01050	UnaL2 links to Rfam database...	0.92	0.85	1.00	11	619	2	0	0	2	2
PDB_01051	Telomerase-cil links to Rfam database...	0.79	0.69	0.90	9	893	5	0	1	4	4
PDB_01053	tRNA links to Rfam database...	0.46	0.44	0.50	7	1364	7	2	5	0	9
PDB_01056	-	0.94	0.89	1.00	8	245	0	0	0	0	1
PDB_01057	-	1.00	1.00	1.00	8	202	0	0	0	0	0
PDB_01059	-	0.75	0.57	1.00	4	227	0	0	0	0	3
PDB_01060	-	-0.01	0.00	0.00	0	1987	29	0	29	0	21
PDB_01061	-	0.14	0.15	0.16	6	3122	32	0	32	0	34
PDB_01062	-	0.75	0.56	1.00	9	937	0	0	0	0	7
PDB_01065	-	-0.02	0.00	0.00	0	228	3	0	3	0	10
PDB_01071	-	0.78	0.62	1.00	8	398	0	0	0	0	5
PDB_01073	SAM links to Rfam database...	0.43	0.38	0.50	13	4345	13	1	12	0	21
PDB_01074	-	-0.01	0.00	0.00	0	2756	19	2	17	0	25
PDB_01075	-	0.86	0.75	1.00	24	2391	0	0	0	0	8
PDB_01077	-	-0.01	0.00	0.00	0	1947	6	0	6	0	19
PDB_01084	-	1.00	1.00	1.00	7	224	0	0	0	0	0
PDB_01097	-	0.93	0.88	1.00	7	203	0	0	0	0	1
PDB_01099	-	0.85	0.73	1.00	8	268	0	0	0	0	3
PDB_01100	-	-0.01	0.00	0.00	0	1472	13	0	13	0	22
PDB_01108	-	1.00	1.00	1.00	9	222	0	0	0	0	0
PDB_01114	TPP links to Rfam database...	0.27	0.22	0.35	6	2833	11	1	10	0	21
PDB_01117	-	-0.01	0.00	0.00	0	772	8	0	8	0	17
PDB_01118	-	0.92	0.84	1.00	16	1580	1	0	0	1	3
PDB_01119	-	0.66	0.64	0.69	9	617	4	2	2	0	5
PDB_01126	-	-0.01	0.00	0.00	0	3051	30	4	26	0	28
PDB_01127	-	0.92	0.86	1.00	12	978	2	0	0	2	2
PDB_01128	-	0.86	0.74	1.00	20	2755	0	0	0	0	7
PDB_01130	-	0.95	0.90	1.00	18	1752	0	0	0	0	2
PDB_01133	-	0.95	0.90	1.00	9	342	0	0	0	0	1
PDB_01135	-	-0.02	0.00	0.00	0	397	9	2	7	0	9
PDB_01137	-	-0.02	0.00	0.00	0	321	4	2	2	0	8
PDB_01138	-	-0.02	0.00	0.00	0	317	8	0	8	0	7
PDB_01145	-	1.00	1.00	1.00	14	766	2	0	0	2	0
PDB_01150	-	0.93	0.88	1.00	7	224	0	0	0	0	1
PDB_01152	HIV_FS2 links to Rfam database...	0.88	0.79	1.00	11	550	0	0	0	0	3
PDB_01154	-	-0.02	0.00	0.00	0	402	4	0	4	0	11
PDB_01156	-	-0.01	0.00	0.00	0	3800	28	1	27	0	35
PDB_01160	-	0.15	0.15	0.17	3	2062	15	2	13	0	17
PDB_01162	-	0.48	0.56	0.42	5	1528	11	0	7	4	4
PDB_01163	-	0.98	0.95	1.00	21	1014	0	0	0	0	1
PDB_01164	-	0.96	0.92	1.00	24	1516	0	0	0	0	2
PDB_01167	-	0.86	0.75	1.00	6	184	0	0	0	0	2
PDB_01168	-	0.86	0.75	1.00	6	184	0	0	0	0	2
PDB_01178	-	0.84	0.71	1.00	10	518	0	0	0	0	4
PDB_01194	-	0.52	0.33	0.83	5	490	1	1	0	0	10
PDB_01199	-	-0.01	0.00	0.00	0	2127	18	2	16	0	24
PDB_01201	-	0.85	0.73	1.00	16	1112	0	0	0	0	6
PDB_01203	-	-0.01	0.00	0.00	0	1166	10	0	10	0	19
PDB_01205	-	-0.02	0.00	0.00	0	1015	20	4	16	0	18
PDB_01208	-	0.70	0.50	1.00	10	1166	0	0	0	0	10
PDB_01209	-	-0.01	0.00	0.00	0	1168	8	0	8	0	20
PDB_01212	-	0.70	0.50	1.00	10	1166	0	0	0	0	10
PDB_01213	-	-0.01	0.00	0.00	0	1075	6	0	6	0	18
PDB_01216	-	0.70	0.50	1.00	10	1166	0	0	0	0	10
PDB_01219	-	-0.02	0.00	0.00	0	934	12	0	12	0	20
PDB_01237	-	1.00	1.00	1.00	8	268	0	0	0	0	0
PDB_01251	-	0.87	0.77	1.00	10	315	0	0	0	0	3
PDB_01260	-	-0.01	0.00	0.00	0	1817	13	0	13	0	25
PDB_01262	-	-0.03	0.00	0.00	0	186	4	0	4	0	8
PDB_01281	-	-0.03	0.00	0.00	0	366	12	0	12	0	14
PDB_01299	-	-0.01	0.00	0.00	0	897	6	2	4	0	15
PDB_01313	-	-0.03	0.00	0.00	0	270	6	4	2	0	8
PDB_01325	-	0.91	0.83	1.00	10	266	0	0	0	0	2
PDB_01332	-	0.81	0.67	1.00	6	345	0	0	0	0	3
PDB_01337	-	0.52	0.27	1.00	3	558	0	0	0	0	8
PDB_01338	-	-0.03	0.00	0.00	0	269	7	2	5	0	8
PDB_01340	-	0.70	0.50	1.00	4	296	0	0	0	0	4
RFA_00389	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	1	0	0	1	0
RFA_00390	Hammerhead_3 links to Rfam database...	0.33	0.33	0.33	5	1416	10	1	9	0	10
RFA_00391	Hammerhead_3 links to Rfam database...	0.51	0.27	1.00	4	1427	1	0	0	1	11
RFA_00396	Hammerhead_3 links to Rfam database...	0.63	0.40	1.00	6	1425	0	0	0	0	9
RFA_00402	Hammerhead_3 links to Rfam database...	0.40	0.33	0.50	5	1421	5	0	5	0	10
RFA_00409	Hammerhead_3 links to Rfam database...	0.77	0.60	1.00	9	1422	1	0	0	1	6
RFA_00416	Hammerhead_3 links to Rfam database...	0.77	0.60	1.00	9	1476	1	0	0	1	6
RFA_00420	-	1.00	1.00	1.00	15	3306	11	0	0	11	0
RFA_00425	Hammerhead_3 links to Rfam database...	0.66	0.67	0.67	10	1638	6	1	4	1	5
RFA_00427	Hammerhead_3 links to Rfam database...	0.38	0.33	0.45	5	1474	6	1	5	0	10
RFA_00429	-	1.00	1.00	1.00	9	771	2	0	0	2	0
RFA_00433	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00434	Hammerhead_3 links to Rfam database...	0.39	0.40	0.40	6	1416	10	3	6	1	9
RFA_00436	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00440	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1470	2	0	0	2	0
RFA_00442	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00444	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1525	1	0	0	1	0
RFA_00446	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1471	2	0	0	2	1
RFA_00449	Hammerhead_3 links to Rfam database...	0.58	0.33	1.00	5	1480	1	0	0	1	10
RFA_00583	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4935	10	0	0	10	0
RFA_00584	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	2911	7	0	0	7	0
RFA_00585	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4836	11	0	0	11	0
RFA_00586	Y_RNA links to Rfam database...	0.00	0.00	0.00	0	3910	6	0	6	0	15
RFA_00587	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4836	11	0	0	11	0
RFA_00588	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4545	13	0	0	13	0
RFA_00589	Y_RNA links to Rfam database...	0.97	0.93	1.00	14	4357	14	0	0	14	1
RFA_00594	Y_RNA links to Rfam database...	0.90	0.87	0.93	13	2761	7	0	1	6	2
RFA_00636	HDV_ribozyme links to Rfam database...	0.65	0.64	0.67	18	3978	9	3	6	0	10
RFA_00642	Vimentin3 links to Rfam database...	0.00	0.00	0.00	0	2917	9	3	6	0	18
RFA_00643	Vimentin3 links to Rfam database...	0.00	0.00	0.00	0	2205	6	0	6	0	18
RFA_00644	Vimentin3 links to Rfam database...	0.00	0.00	0.00	0	2694	7	3	4	0	18
RFA_00645	Vimentin3 links to Rfam database...	0.00	0.00	0.00	0	2410	5	1	4	0	18
RFA_00649	Vimentin3 links to Rfam database...	0.53	0.33	0.86	6	2138	1	0	1	0	12
RFA_00651	Vimentin3 links to Rfam database...	0.39	0.33	0.46	6	2067	7	0	7	0	12
RFA_00653	Vimentin3 links to Rfam database...	0.35	0.33	0.38	6	2129	10	2	8	0	12
RFA_00654	Vimentin3 links to Rfam database...	-0.01	0.00	0.00	0	2404	11	2	9	0	18
RFA_00658	Hammerhead_1 links to Rfam database...	0.59	0.50	0.70	7	1118	5	0	3	2	7
RFA_00659	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	1122	8	0	6	2	14
RFA_00664	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	980	10	0	10	0	14
RFA_00667	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	982	8	1	7	0	14
RFA_00668	Hammerhead_1 links to Rfam database...	0.50	0.43	0.60	6	980	4	0	4	0	8
RFA_00672	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	897	6	0	6	0	13
RFA_00673	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	1125	3	0	3	0	14
RFA_00674	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	1122	6	0	6	0	14
RFA_00675	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	985	5	0	5	0	14
RFA_00677	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	984	6	0	6	0	14
RFA_00678	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	941	5	0	5	0	14
RFA_00680	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	1121	7	2	5	0	14
RFA_00683	-	0.33	0.29	0.40	4	1025	6	0	6	0	10
RFA_00684	Hammerhead_1 links to Rfam database...	0.53	0.29	1.00	4	986	1	0	0	1	10
RFA_00685	Hammerhead_1 links to Rfam database...	0.47	0.36	0.63	5	982	4	0	3	1	9
RFA_00704	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	983	7	0	7	0	14
RFA_00705	Hammerhead_1 links to Rfam database...	0.74	0.71	0.77	10	1022	4	0	3	1	4
RFA_00706	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	1027	8	0	8	0	14
RFA_00707	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	1030	5	0	5	0	14
RFA_00708	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	1028	7	0	7	0	14
RFA_00709	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	982	8	0	8	0	14
RFA_00710	Hammerhead_1 links to Rfam database...	0.42	0.36	0.50	5	980	6	0	5	1	9
RFA_00711	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	1023	12	0	12	0	14
RFA_00715	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	940	6	0	6	0	14
RFA_00716	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	939	7	0	7	0	14
RFA_00717	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	898	5	0	5	0	14
RFA_00720	-	0.39	0.43	0.38	6	1160	10	4	6	0	8
RFA_00721	-	0.37	0.29	0.50	4	1168	4	0	4	0	10
RFA_00730	s2m links to Rfam database...	-0.01	0.00	0.00	0	897	6	1	5	0	12
RFA_00731	s2m links to Rfam database...	0.41	0.42	0.42	5	891	8	3	4	1	7
RFA_00733	s2m links to Rfam database...	-0.01	0.00	0.00	0	898	5	0	5	0	12
RFA_00734	s2m links to Rfam database...	0.67	0.58	0.78	7	894	3	0	2	1	5
RFA_00736	s2m links to Rfam database...	0.43	0.42	0.45	5	892	7	1	5	1	7
RFA_00737	s2m links to Rfam database...	0.43	0.42	0.45	5	892	7	2	4	1	7
RFA_00745	s2m links to Rfam database...	-0.01	0.00	0.00	0	938	8	2	6	0	12
RFA_00749	s2m links to Rfam database...	0.43	0.42	0.45	5	892	7	1	5	1	7
RFA_00758	s2m links to Rfam database...	-0.01	0.00	0.00	0	900	3	0	3	0	12
RFA_00762	s2m links to Rfam database...	-0.01	0.00	0.00	0	894	9	2	7	0	12
RFA_00763	s2m links to Rfam database...	-0.01	0.00	0.00	0	897	6	1	5	0	12
RFA_00764	s2m links to Rfam database...	0.51	0.42	0.63	5	895	4	1	2	1	7
RFA_00765	s2m links to Rfam database...	0.43	0.42	0.45	5	892	7	2	4	1	7
RFA_00767	Corona_pk3 links to Rfam database...	0.71	0.50	1.00	9	1882	0	0	0	0	9
RFA_00768	Corona_pk3 links to Rfam database...	0.74	0.56	1.00	10	1881	0	0	0	0	8
RFA_00769	Corona_pk3 links to Rfam database...	0.50	0.50	0.50	9	1935	9	4	5	0	9
RFA_00770	Corona_pk3 links to Rfam database...	0.47	0.39	0.58	7	2004	5	1	4	0	11
RFA_00773	Corona_pk3 links to Rfam database...	0.67	0.50	0.90	9	1943	1	1	0	0	9
RFA_00779	Corona_pk3 links to Rfam database...	0.71	0.50	1.00	9	1944	0	0	0	0	9
RFA_00808	RydC links to Rfam database...	0.68	0.56	0.82	9	2005	3	0	2	1	7
RFA_00809	RydC links to Rfam database...	0.40	0.38	0.43	6	2131	8	1	7	0	10
SPR_00007	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00012	tRNA links to Rfam database...	0.95	0.90	1.00	18	2832	0	0	0	0	2
SPR_00013	tRNA links to Rfam database...	0.95	0.90	1.00	18	2832	0	0	0	0	2
SPR_00017	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00020	tRNA links to Rfam database...	0.54	0.45	0.64	9	2687	8	0	5	3	11
SPR_00022	tRNA links to Rfam database...	0.87	0.76	1.00	16	2910	0	0	0	0	5
SPR_00023	tRNA links to Rfam database...	0.82	0.86	0.78	18	2827	5	0	5	0	3
SPR_00029	tRNA links to Rfam database...	-0.01	0.00	0.00	0	2614	14	3	11	0	20
SPR_00030	-	0.49	0.24	1.00	5	2480	0	0	0	0	16
SPR_00032	tRNA links to Rfam database...	0.66	0.48	0.91	10	2545	3	0	1	2	11
SPR_00033	tRNA links to Rfam database...	0.66	0.48	0.91	10	2617	1	0	1	0	11
SPR_00034	-	0.36	0.24	0.56	5	2476	4	1	3	0	16
SPR_00036	tRNA links to Rfam database...	0.82	0.80	0.84	16	2756	3	0	3	0	4
SPR_00044	tRNA links to Rfam database...	0.82	0.80	0.84	16	2831	3	0	3	0	4
SPR_00045	tRNA links to Rfam database...	0.93	0.91	0.95	20	2829	1	0	1	0	2
SPR_00060	tRNA links to Rfam database...	0.54	0.57	0.52	12	2752	11	4	7	0	9
SPR_00064	tRNA links to Rfam database...	0.60	0.57	0.63	12	2831	7	0	7	0	9
SPR_00065	tRNA links to Rfam database...	0.53	0.48	0.59	10	2833	7	1	6	0	11
SPR_00066	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00068	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00070	tRNA links to Rfam database...	0.46	0.43	0.50	9	2832	11	0	9	2	12
SPR_00074	tRNA links to Rfam database...	0.97	0.95	1.00	19	2831	1	0	0	1	1
SPR_00078	-	0.45	0.20	1.00	3	1888	1	0	0	1	12
SPR_00079	tRNA links to Rfam database...	-0.01	0.00	0.00	0	2473	12	0	12	0	19
SPR_00080	tRNA links to Rfam database...	1.00	1.00	1.00	19	2396	0	0	0	0	0
SPR_00087	tRNA links to Rfam database...	0.76	0.70	0.82	14	2833	3	1	2	0	6
SPR_00088	tRNA links to Rfam database...	0.56	0.50	0.63	10	2834	6	3	3	0	10
SPR_00089	tRNA links to Rfam database...	0.76	0.70	0.82	14	2833	3	1	2	0	6
SPR_00090	tRNA links to Rfam database...	-0.01	0.00	0.00	0	2834	16	6	10	0	20
SPR_00091	tRNA links to Rfam database...	0.45	0.45	0.45	9	2830	11	3	8	0	11
SPR_00095	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00111	tRNA links to Rfam database...	0.48	0.48	0.50	10	2681	11	3	7	1	11
SPR_00112	tRNA links to Rfam database...	0.98	0.95	1.00	20	2681	2	0	0	2	1
SPR_00113	tRNA links to Rfam database...	0.92	0.85	1.00	17	2758	1	0	0	1	3
SPR_00114	tRNA links to Rfam database...	1.00	1.00	1.00	21	2680	1	0	0	1	0
SPR_00115	tRNA links to Rfam database...	0.61	0.57	0.67	12	2683	6	2	4	0	9
SPR_00116	tRNA links to Rfam database...	0.98	0.95	1.00	20	2681	2	0	0	2	1
SPR_00117	tRNA links to Rfam database...	0.68	0.71	0.65	15	2827	8	1	7	0	6
SPR_00121	tRNA links to Rfam database...	0.98	0.95	1.00	20	2755	3	0	0	3	1
SPR_00124	tRNA links to Rfam database...	0.68	0.50	0.92	11	2544	1	0	1	0	11
SPR_00126	-	-0.01	0.00	0.00	0	2068	12	2	10	0	20
SPR_00127	-	0.31	0.22	0.44	4	2406	7	1	4	2	14
SPR_00137	tRNA links to Rfam database...	-0.01	0.00	0.00	0	2908	18	1	17	0	21
SPR_00139	tRNA links to Rfam database...	0.56	0.52	0.61	11	2908	8	2	5	1	10
SPR_00141	tRNA links to Rfam database...	0.82	0.80	0.84	16	2756	5	0	3	2	4
SPR_00142	-	0.40	0.26	0.63	5	2620	3	1	2	0	14
SPR_00153	tRNA links to Rfam database...	0.21	0.19	0.24	4	2909	13	3	10	0	17
SPR_00155	tRNA links to Rfam database...	0.22	0.19	0.27	4	2911	11	1	10	0	17
SPR_00156	tRNA links to Rfam database...	0.20	0.19	0.22	4	2908	14	0	14	0	17
SPR_00163	tRNA links to Rfam database...	0.34	0.24	0.50	5	2840	5	0	5	0	16
SPR_00164	tRNA links to Rfam database...	0.26	0.19	0.36	4	2915	7	0	7	0	17
SPR_00166	-	0.43	0.37	0.50	7	2542	7	0	7	0	12
SPR_00167	tRNA links to Rfam database...	0.50	0.25	1.00	5	2551	0	0	0	0	15
SPR_00176	tRNA links to Rfam database...	0.60	0.50	0.71	10	2836	4	3	1	0	10
SPR_00177	tRNA links to Rfam database...	0.60	0.57	0.63	12	2831	7	2	5	0	9
SPR_00178	tRNA links to Rfam database...	0.22	0.24	0.22	5	2827	18	7	11	0	16
SPR_00183	-	0.48	0.40	0.57	8	2836	6	0	6	0	12
SPR_00191	tRNA links to Rfam database...	0.78	0.76	0.80	16	2830	4	0	4	0	5
SPR_00209	tRNA links to Rfam database...	0.87	0.89	0.85	17	3550	3	3	0	0	2
SPR_00215	tRNA links to Rfam database...	0.60	0.50	0.71	10	3556	4	0	4	0	10
SPR_00218	tRNA links to Rfam database...	0.21	0.25	0.19	5	3715	22	7	14	1	15
SPR_00219	tRNA links to Rfam database...	0.45	0.45	0.45	9	3721	11	3	8	0	11
SPR_00220	tRNA links to Rfam database...	0.38	0.30	0.50	6	3729	6	0	6	0	14
SPR_00223	tRNA links to Rfam database...	0.61	0.60	0.63	12	3551	7	5	2	0	8
SPR_00224	tRNA links to Rfam database...	0.26	0.25	0.28	5	3723	15	5	8	2	15
SPR_00225	tRNA links to Rfam database...	0.48	0.52	0.44	11	3716	14	6	8	0	10
SPR_00227	tRNA links to Rfam database...	0.60	0.57	0.63	12	3467	9	2	5	2	9
SPR_00228	tRNA links to Rfam database...	0.47	0.50	0.45	10	3806	13	5	7	1	10
SPR_00229	tRNA links to Rfam database...	0.90	0.86	0.95	18	3384	1	0	1	0	3
SPR_00230	tRNA links to Rfam database...	-0.01	0.00	0.00	0	3547	23	7	16	0	21
SPR_00235	tRNA links to Rfam database...	0.50	0.57	0.44	12	3714	15	10	5	0	9
SPR_00236	tRNA links to Rfam database...	0.29	0.25	0.33	5	3555	13	2	8	3	15
SPR_00246	tRNA links to Rfam database...	0.46	0.45	0.47	9	2682	11	1	9	1	11
SPR_00271	tRNA links to Rfam database...	0.33	0.33	0.33	7	2829	14	4	10	0	14
SPR_00273	tRNA links to Rfam database...	0.95	0.90	1.00	19	2831	0	0	0	0	2
SPR_00276	tRNA links to Rfam database...	0.95	0.90	1.00	19	2907	0	0	0	0	2
SPR_00279	tRNA links to Rfam database...	0.44	0.19	1.00	4	2922	0	0	0	0	17
SPR_00281	-	0.48	0.24	1.00	4	2012	0	0	0	0	13
SPR_00289	tRNA links to Rfam database...	0.28	0.25	0.33	5	2911	10	2	8	0	15
SPR_00294	tRNA links to Rfam database...	0.58	0.57	0.60	12	2830	8	4	4	0	9
SPR_00295	tRNA links to Rfam database...	0.30	0.24	0.38	5	2762	8	0	8	0	16
SPR_00297	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	0	0	0	0	0
SPR_00298	tRNA links to Rfam database...	0.97	0.95	1.00	19	2756	0	0	0	0	1
SPR_00309	tRNA links to Rfam database...	0.53	0.48	0.59	10	2909	7	1	6	0	11
SPR_00314	tRNA links to Rfam database...	0.98	0.95	1.00	20	2906	1	0	0	1	1
SPR_00315	tRNA links to Rfam database...	0.53	0.52	0.55	11	2906	9	3	6	0	10
SPR_00316	tRNA links to Rfam database...	0.55	0.52	0.58	11	2907	8	2	6	0	10
SPR_00320	tRNA links to Rfam database...	0.36	0.37	0.37	7	2756	12	0	12	0	12
SPR_00321	tRNA links to Rfam database...	0.28	0.24	0.33	5	2988	10	4	6	0	16
SPR_00329	tRNA links to Rfam database...	0.86	0.86	0.86	18	2829	3	2	1	0	3
SPR_00331	tRNA links to Rfam database...	1.00	1.00	1.00	20	2755	0	0	0	0	0
SPR_00333	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	0	0	0	0	0
SPR_00339	tRNA links to Rfam database...	0.30	0.33	0.28	7	2750	18	6	12	0	14
SPR_00352	tRNA links to Rfam database...	-0.01	0.00	0.00	0	2907	19	3	16	0	21
SPR_00353	tRNA links to Rfam database...	0.25	0.24	0.26	5	2831	14	2	12	0	16
SPR_00356	tRNA links to Rfam database...	0.66	0.48	0.91	10	2764	1	0	1	0	11
SPR_00358	tRNA links to Rfam database...	0.82	0.80	0.84	16	2907	3	1	2	0	4
SPR_00359	tRNA links to Rfam database...	0.55	0.50	0.61	11	2908	7	4	3	0	11
SPR_00360	tRNA links to Rfam database...	0.68	0.50	0.92	11	2689	1	0	1	0	11
SPR_00362	-	0.44	0.46	0.43	6	1417	9	5	3	1	7
SPR_00363	-	-0.01	0.00	0.00	0	1587	9	1	8	0	15
SPR_00364	-	0.40	0.35	0.47	7	2196	8	0	8	0	13
SPR_00365	-	0.65	0.50	0.85	11	2543	3	0	2	1	11
SPR_00366	-	0.81	0.75	0.88	15	2539	2	1	1	0	5
SPR_00367	-	0.55	0.50	0.61	11	2467	7	0	7	0	11
SPR_00373	tRNA links to Rfam database...	0.71	0.71	0.71	15	2829	6	3	3	0	6
SPR_00388	tRNA links to Rfam database...	0.45	0.48	0.43	10	4163	15	6	7	2	11
SPR_00393	tRNA links to Rfam database...	0.56	0.60	0.52	12	3805	11	7	4	0	8
SPR_00394	tRNA links to Rfam database...	0.44	0.24	0.83	5	3649	1	0	1	0	16
SPR_00395	tRNA links to Rfam database...	0.53	0.57	0.50	12	3981	17	6	6	5	9
SPR_00398	-	-0.01	0.00	0.00	0	2198	13	2	11	0	13
SPR_00399	-	0.62	0.75	0.52	12	2462	12	5	6	1	4
SPR_00402	tRNA links to Rfam database...	0.98	0.95	1.00	20	2536	1	0	0	1	1
SPR_00412	tRNA links to Rfam database...	0.77	0.81	0.74	17	3632	7	3	3	1	4
SPR_00414	tRNA links to Rfam database...	0.50	0.48	0.53	10	3551	9	3	6	0	11
SPR_00415	tRNA links to Rfam database...	0.83	0.81	0.85	17	3550	3	1	2	0	4
SPR_00416	tRNA links to Rfam database...	0.23	0.24	0.24	5	3549	16	4	12	0	16
SPR_00417	tRNA links to Rfam database...	0.23	0.23	0.25	5	3550	15	0	15	0	17
SPR_00418	tRNA links to Rfam database...	0.56	0.55	0.57	12	3549	9	2	7	0	10
SPR_00426	tRNA links to Rfam database...	1.00	1.00	1.00	21	2982	3	0	0	3	0
SPR_00434	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00435	tRNA links to Rfam database...	0.68	0.67	0.70	14	2830	6	2	4	0	7
SPR_00436	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	2	0	0	2	0
SPR_00437	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	2	0	0	2	0
SPR_00438	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	0	0	0	0	0
SPR_00439	tRNA links to Rfam database...	0.76	0.80	0.73	16	2679	7	4	2	1	4
SPR_00445	tRNA links to Rfam database...	0.76	0.85	0.68	17	2978	8	2	6	0	3
SPR_00452	tRNA links to Rfam database...	0.46	0.43	0.50	9	2832	9	0	9	0	12
SPR_00456	tRNA links to Rfam database...	0.57	0.57	0.57	12	2829	11	1	8	2	9
SPR_00458	tRNA links to Rfam database...	0.78	0.65	0.93	13	2836	1	0	1	0	7
SPR_00459	tRNA links to Rfam database...	0.50	0.25	1.00	5	2770	0	0	0	0	15
SPR_00461	tRNA links to Rfam database...	0.69	0.47	1.00	9	2547	0	0	0	0	10
SPR_00462	tRNA links to Rfam database...	0.61	0.58	0.65	11	2398	6	3	3	0	8
SPR_00467	tRNA links to Rfam database...	0.23	0.20	0.27	4	2835	11	0	11	0	16
SPR_00476	tRNA links to Rfam database...	0.19	0.19	0.21	4	2756	15	0	15	0	17
SPR_00478	tRNA links to Rfam database...	0.24	0.24	0.26	5	2756	15	4	10	1	16
SPR_00479	tRNA links to Rfam database...	0.85	0.81	0.89	17	2831	3	0	2	1	4
SPR_00481	tRNA links to Rfam database...	0.62	0.52	0.73	11	2760	4	0	4	0	10
SPR_00482	tRNA links to Rfam database...	0.98	0.95	1.00	20	2681	0	0	0	0	1
SPR_00483	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00489	tRNA links to Rfam database...	0.76	0.76	0.76	16	2680	5	0	5	0	5
SPR_00493	tRNA links to Rfam database...	0.79	0.77	0.81	17	2754	4	2	2	0	5
SPR_00496	tRNA links to Rfam database...	0.21	0.19	0.25	4	2759	12	0	12	0	17
SPR_00497	tRNA links to Rfam database...	0.19	0.19	0.21	4	2756	15	0	15	0	17
SPR_00498	tRNA links to Rfam database...	0.85	0.85	0.85	17	2983	3	3	0	0	3
SPR_00502	tRNA links to Rfam database...	0.53	0.52	0.55	11	2906	9	0	9	0	10
SPR_00504	tRNA links to Rfam database...	0.28	0.25	0.33	5	2835	10	2	8	0	15
SPR_00506	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00509	tRNA links to Rfam database...	0.51	0.50	0.53	10	2907	9	0	9	0	10
SPR_00512	tRNA links to Rfam database...	0.30	0.30	0.30	6	2906	14	4	10	0	14
SPR_00513	tRNA links to Rfam database...	0.21	0.20	0.24	4	2909	13	3	10	0	16
SPR_00517	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	0	0	0	0	0
SPR_00518	tRNA links to Rfam database...	0.97	0.95	1.00	19	2907	0	0	0	0	1
SPR_00519	tRNA links to Rfam database...	0.98	0.95	1.00	20	2536	0	0	0	0	1
SPR_00520	tRNA links to Rfam database...	0.70	0.72	0.68	13	2537	6	4	2	0	5
SPR_00533	tRNA links to Rfam database...	0.41	0.38	0.44	8	2757	10	2	8	0	13
SPR_00541	tRNA links to Rfam database...	0.14	0.14	0.15	3	3466	17	3	14	0	18
SPR_00542	tRNA links to Rfam database...	0.60	0.62	0.59	13	3548	9	0	9	0	8
SPR_00548	tRNA links to Rfam database...	0.79	0.81	0.77	17	3381	5	2	3	0	4
SPR_00550	tRNA links to Rfam database...	0.88	0.77	1.00	17	3811	0	0	0	0	5
SPR_00552	tRNA links to Rfam database...	-0.01	0.00	0.00	0	2680	21	5	16	0	19
SPR_00557	tRNA links to Rfam database...	0.21	0.19	0.24	4	2833	13	1	12	0	17
SPR_00561	tRNA links to Rfam database...	0.37	0.38	0.36	8	2828	14	1	13	0	13
SPR_00590	tRNA links to Rfam database...	0.80	0.80	0.80	16	2983	4	4	0	0	4
SPR_00593	tRNA links to Rfam database...	0.34	0.37	0.32	7	2753	15	7	8	0	12
SPR_00595	tRNA links to Rfam database...	0.98	0.95	1.00	20	2755	0	0	0	0	1
SPR_00598	tRNA links to Rfam database...	0.33	0.33	0.33	7	2982	14	1	13	0	14
SPR_00610	tRNA links to Rfam database...	0.90	0.81	1.00	17	2539	1	0	0	1	4
SPR_00620	tRNA links to Rfam database...	0.25	0.24	0.28	5	2985	16	0	13	3	16
SPR_00629	-	0.45	0.33	0.63	5	1883	4	3	0	1	10
SPR_00632	tRNA links to Rfam database...	0.89	0.80	1.00	16	2540	0	0	0	0	4
SPR_00633	tRNA links to Rfam database...	0.92	0.85	1.00	17	2539	0	0	0	0	3
SPR_00721	tRNA links to Rfam database...	0.98	0.95	1.00	20	2906	1	0	0	1	1
SPR_00722	tRNA links to Rfam database...	0.75	0.75	0.75	15	2906	5	4	1	0	5
SPR_00750	tRNA links to Rfam database...	0.40	0.16	1.00	3	2553	0	0	0	0	16
SPR_00760	tRNA links to Rfam database...	0.20	0.19	0.22	4	3552	14	0	14	0	17
SPR_00768	-	0.28	0.22	0.36	4	2069	7	0	7	0	14
SPR_00777	tRNA links to Rfam database...	-0.01	0.00	0.00	0	2613	15	1	14	0	20
SPR_00810	tRNA links to Rfam database...	0.33	0.26	0.42	5	3558	7	0	7	0	14
SPR_00816	tRNA links to Rfam database...	0.33	0.35	0.32	7	3464	16	2	13	1	13
SPR_00832	-	-0.01	0.00	0.00	0	1645	8	3	5	0	15
SPR_00867	tRNA links to Rfam database...	0.25	0.24	0.26	5	2907	14	2	12	0	16
SPR_00868	tRNA links to Rfam database...	0.28	0.24	0.33	5	2911	11	0	10	1	16
SPR_00882	tRNA links to Rfam database...	0.58	0.60	0.57	12	2607	9	3	6	0	8
SPR_00913	tRNA links to Rfam database...	0.32	0.33	0.32	7	2981	18	3	12	3	14
SPR_00932	tRNA links to Rfam database...	0.90	0.81	1.00	17	2833	0	0	0	0	4
SPR_00938	-	-0.01	0.00	0.00	0	1647	6	3	3	0	15
SPR_00943	tRNA links to Rfam database...	0.92	0.85	1.00	17	2539	1	0	0	1	3
SPR_00957	tRNA links to Rfam database...	0.58	0.57	0.60	12	2983	9	1	7	1	9
SPR_01040	tRNA links to Rfam database...	0.56	0.48	0.67	10	2760	6	0	5	1	11
SPR_01051	tRNA links to Rfam database...	0.52	0.52	0.52	11	2535	10	4	6	0	10
SPR_01095	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_01103	-	0.31	0.33	0.29	5	1753	12	5	7	0	10
SPR_01106	tRNA links to Rfam database...	-0.01	0.00	0.00	0	2540	16	4	12	0	21
SPR_01117	tRNA links to Rfam database...	0.76	0.76	0.76	16	2982	6	0	5	1	5
SPR_01143	tRNA links to Rfam database...	0.36	0.33	0.39	7	2538	11	0	11	0	14
SPR_01157	tRNA links to Rfam database...	0.81	0.81	0.81	17	2754	5	3	1	1	4
SRP_00005	-	0.00	0.00	0.00	0	3992	13	2	11	0	24
SRP_00042	Bacteria_small_SRP links to Rfam database...	0.50	0.48	0.52	12	3982	12	0	11	1	13
SRP_00046	Bacteria_small_SRP links to Rfam database...	0.60	0.53	0.68	17	4728	9	0	8	1	15
SRP_00083	-	0.00	0.00	0.00	0	4834	17	2	15	0	30
SRP_00094	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	4076	19	3	16	0	24
SRP_00095	Bacteria_small_SRP links to Rfam database...	0.28	0.28	0.29	7	3981	17	3	14	0	18
SRP_00101	-	0.31	0.24	0.40	6	3555	10	1	8	1	19
SRP_00107	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	3632	25	6	17	2	19
SRP_00121	Bacteria_small_SRP links to Rfam database...	0.50	0.44	0.58	11	4259	8	1	7	0	14
SRP_00132	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	4827	25	2	22	1	29
SRP_00137	Bacteria_small_SRP links to Rfam database...	0.38	0.40	0.37	10	4159	17	8	9	0	15
SRP_00138	-	0.45	0.44	0.46	12	3979	16	2	12	2	15
SRP_00139	-	0.00	0.00	0.00	0	2139	6	1	5	0	12
SRP_00161	Bacteria_small_SRP links to Rfam database...	0.55	0.41	0.75	9	2838	3	0	3	0	13
SRP_00162	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	2911	15	1	14	0	23
SRP_00163	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	3472	14	0	14	0	26
SRP_00170	Bacteria_small_SRP links to Rfam database...	0.40	0.32	0.50	8	4079	9	3	5	1	17
SRP_00194	Bacteria_small_SRP links to Rfam database...	0.50	0.43	0.60	9	3225	6	0	6	0	12
SRP_00209	Bacteria_small_SRP links to Rfam database...	0.57	0.56	0.60	15	4631	10	2	8	0	12
SRP_00213	Bacteria_small_SRP links to Rfam database...	0.41	0.40	0.43	10	4163	13	3	10	0	15
SRP_00214	-	0.00	0.00	0.00	0	3078	3	0	3	0	24
SRP_00215	Bacteria_small_SRP links to Rfam database...	0.63	0.52	0.76	13	3223	4	0	4	0	12
SRP_00216	Bacteria_small_SRP links to Rfam database...	0.91	0.89	0.92	24	3377	3	1	1	1	3
SRP_00217	Bacteria_small_SRP links to Rfam database...	0.31	0.25	0.40	6	3306	10	0	9	1	18
SRP_00219	Bacteria_small_SRP links to Rfam database...	0.78	0.78	0.78	18	3298	6	0	5	1	5
SRP_00221	-	0.00	0.00	0.00	0	3397	6	1	5	0	21
SRP_00223	-	-0.01	0.00	0.00	0	3386	17	6	11	0	20
SRP_00256	-	-0.01	0.00	0.00	0	4257	22	3	18	1	22
SRP_00266	Bacteria_small_SRP links to Rfam database...	0.48	0.31	0.75	9	4644	4	0	3	1	20
SRP_00271	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	3220	20	1	19	0	24
SRP_00284	-	0.58	0.52	0.65	15	3718	8	1	7	0	14
SRP_00285	Bacteria_small_SRP links to Rfam database...	0.45	0.40	0.52	12	3718	11	0	11	0	18
SRP_00310	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	2921	5	1	4	0	23
SRP_00312	Bacteria_small_SRP links to Rfam database...	0.87	0.85	0.88	23	4160	3	0	3	0	4
SRP_00315	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	2912	14	0	14	0	23
SRP_00318	Bacteria_small_SRP links to Rfam database...	0.16	0.13	0.21	3	2989	11	1	10	0	20
SRP_00325	Bacteria_small_SRP links to Rfam database...	0.45	0.39	0.52	13	4346	12	1	11	0	20
SRP_00341	Bacteria_small_SRP links to Rfam database...	0.33	0.29	0.38	9	4729	15	0	15	0	22
SRP_00342	Bacteria_small_SRP links to Rfam database...	0.51	0.48	0.55	12	3983	10	2	8	0	13
SRP_00350	Bacteria_small_SRP links to Rfam database...	0.82	0.78	0.88	21	3892	4	0	3	1	6
SRP_00363	Bacteria_small_SRP links to Rfam database...	0.41	0.30	0.56	9	4737	9	1	6	2	21
SRP_00365	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	3388	15	1	14	0	27
SRP_00383	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	3223	17	0	17	0	24

^top

Performance of MCFold - scored lower in this pairwise comparison

1. Total counts & total scores for MCFold

Total Base Pair Counts
Total TP	5951
Total TN	1184217
Total FP	9677
Total FP CONTRA	1368
Total FP INCONS	6585
Total FP COMP	1724
Total FN	5401

Total Scores
MCC	0.468
Average MCC ± 95% Confidence Intervals	0.528 ± 0.028
Sensitivity	0.524
Positive Predictive Value	0.428
Nr of predictions	649

^top

2. Individual counts for MCFold [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
NDB_00014	-	0.95	0.90	1.00	9	181	0	0	0	0	1
NDB_00015	-	0.36	0.40	0.36	4	265	7	0	7	0	6
NDB_00016	-	0.96	0.92	1.00	11	265	0	0	0	0	1
NDB_00047	-	0.96	0.92	1.00	11	265	0	0	0	0	1
NDB_00048	-	-0.02	0.00	0.00	0	1513	27	0	27	0	28
NDB_00049	-	0.96	0.92	1.00	12	313	0	0	0	0	1
NDB_00051	tRNA links to Rfam database...	0.50	0.58	0.44	14	2743	19	4	14	1	10
PDB_00001	-	0.96	0.92	1.00	11	265	0	0	0	0	1
PDB_00002	-	1.00	1.00	1.00	8	202	0	0	0	0	0
PDB_00003	-	0.91	0.92	0.92	11	339	1	0	1	0	1
PDB_00004	-	1.00	1.00	1.00	19	801	0	0	0	0	0
PDB_00005	Tymo_tRNA-like links to Rfam database...	0.76	0.79	0.73	11	931	6	2	2	2	3
PDB_00006	-	1.00	1.00	1.00	14	689	1	0	0	1	0
PDB_00011	-	0.96	0.92	1.00	11	265	0	0	0	0	1
PDB_00012	mir-TAR links to Rfam database...	1.00	1.00	1.00	7	399	4	0	0	4	0
PDB_00013	-	1.00	1.00	1.00	10	396	2	0	0	2	0
PDB_00017	-	0.66	0.67	0.67	10	688	6	0	5	1	5
PDB_00018	-	0.18	0.20	0.19	4	1014	17	2	15	0	16
PDB_00019	-	0.70	0.75	0.67	6	244	4	0	3	1	2
PDB_00020	-	0.35	0.35	0.39	7	762	11	0	11	0	13
PDB_00021	-	1.00	1.00	1.00	8	182	0	0	0	0	0
PDB_00022	-	1.00	1.00	1.00	9	244	1	0	0	1	0
PDB_00032	-	0.17	0.20	0.17	3	885	15	1	14	0	12
PDB_00034	-	0.78	0.75	0.82	9	367	2	0	2	0	3
PDB_00035	-	0.94	0.89	1.00	8	202	0	0	0	0	1
PDB_00036	-	-0.01	0.00	0.00	0	3447	39	1	38	0	27
PDB_00040	-	1.00	1.00	1.00	10	266	1	0	0	1	0
PDB_00041	-	0.23	0.25	0.23	3	617	12	0	10	2	9
PDB_00043	-	0.84	0.85	0.85	11	422	2	0	2	0	2
PDB_00048	-	1.00	1.00	1.00	9	291	2	0	0	2	0
PDB_00049	-	1.00	1.00	1.00	10	221	0	0	0	0	0
PDB_00053	-	0.56	0.55	0.60	6	425	4	0	4	0	5
PDB_00054	-	0.95	0.90	1.00	9	181	0	0	0	0	1
PDB_00056	-	0.93	0.88	1.00	14	616	0	0	0	0	2
PDB_00057	-	1.00	1.00	1.00	10	341	2	0	0	2	0
PDB_00065	-	1.00	1.00	1.00	10	396	3	0	0	3	0
PDB_00070	tRNA links to Rfam database...	0.60	0.63	0.58	15	2824	14	1	10	3	9
PDB_00074	-	-0.03	0.00	0.00	0	366	12	0	12	0	12
PDB_00081	-	1.00	1.00	1.00	9	181	0	0	0	0	0
PDB_00088	-	1.00	1.00	1.00	12	423	2	0	0	2	0
PDB_00096	-	0.96	0.92	1.00	11	314	0	0	0	0	1
PDB_00098	-	1.00	1.00	1.00	6	225	3	0	0	3	0
PDB_00102	-	1.00	1.00	1.00	8	223	0	0	0	0	0
PDB_00104	-	-0.03	0.00	0.00	0	613	17	0	17	0	16
PDB_00107	-	1.00	1.00	1.00	11	454	3	0	0	3	0
PDB_00108	-	1.00	1.00	1.00	7	203	2	0	0	2	0
PDB_00110	-	1.00	1.00	1.00	7	246	3	0	0	3	0
PDB_00113	-	1.00	1.00	1.00	9	222	0	0	0	0	0
PDB_00115	-	-0.03	0.00	0.00	0	546	15	0	15	0	16
PDB_00116	-	1.00	1.00	1.00	6	225	2	0	0	2	0
PDB_00119	-	1.00	1.00	1.00	10	243	0	0	0	0	0
PDB_00120	-	0.95	0.90	1.00	9	222	0	0	0	0	1
PDB_00121	-	0.95	0.90	1.00	9	222	0	0	0	0	1
PDB_00122	-	0.96	0.92	1.00	11	289	0	0	0	0	1
PDB_00123	-	-0.01	0.00	0.00	0	4143	43	4	39	0	36
PDB_00124	-	-0.02	0.00	0.00	0	484	12	2	10	0	10
PDB_00125	-	-0.04	0.00	0.00	0	223	8	0	8	0	10
PDB_00128	-	0.77	0.71	0.83	10	484	2	0	2	0	4
PDB_00130	-	1.00	1.00	1.00	6	270	4	0	0	4	0
PDB_00132	-	0.91	0.92	0.92	11	423	1	0	1	0	1
PDB_00134	-	0.58	0.63	0.56	5	369	5	1	3	1	3
PDB_00136	-	0.75	0.77	0.74	20	2388	12	0	7	5	6
PDB_00137	-	0.96	0.92	1.00	12	394	0	0	0	0	1
PDB_00138	-	-0.02	0.00	0.00	0	369	11	0	9	2	8
PDB_00142	-	0.91	0.92	0.92	11	423	1	0	1	0	1
PDB_00149	-	1.00	1.00	1.00	15	688	1	0	0	1	0
PDB_00150	-	1.00	1.00	1.00	10	290	1	0	0	1	0
PDB_00152	-	1.00	1.00	1.00	8	182	0	0	0	0	0
PDB_00153	-	1.00	1.00	1.00	10	243	0	0	0	0	0
PDB_00155	-	0.74	0.75	0.75	6	317	4	0	2	2	2
PDB_00157	-	-0.01	0.00	0.00	0	3287	36	4	30	2	29
PDB_00158	-	1.00	1.00	1.00	20	841	0	0	0	0	0
PDB_00159	-	1.00	1.00	1.00	11	340	1	0	0	1	0
PDB_00160	-	1.00	1.00	1.00	9	267	2	0	0	2	0
PDB_00168	-	0.50	0.67	0.40	4	290	7	4	2	1	2
PDB_00169	-	1.00	1.00	1.00	10	221	0	0	0	0	0
PDB_00170	-	1.00	1.00	1.00	16	614	0	0	0	0	0
PDB_00171	-	1.00	1.00	1.00	12	423	1	0	0	1	0
PDB_00174	-	0.98	0.95	1.00	21	1014	0	0	0	0	1
PDB_00175	-	-0.01	0.00	0.00	0	4518	43	0	42	1	36
PDB_00178	-	1.00	1.00	1.00	11	517	3	0	0	3	0
PDB_00181	-	1.00	1.00	1.00	9	222	0	0	0	0	0
PDB_00182	-	1.00	1.00	1.00	9	244	1	0	0	1	0
PDB_00183	-	1.00	1.00	1.00	23	1462	0	0	0	0	0
PDB_00184	-	0.84	0.85	0.85	11	548	4	0	2	2	2
PDB_00185	-	0.93	0.93	0.93	26	2898	7	0	2	5	2
PDB_00190	-	0.95	0.90	1.00	9	222	0	0	0	0	1
PDB_00192	-	0.32	0.33	0.32	12	3202	26	2	24	0	24
PDB_00195	-	-0.01	0.00	0.00	0	3446	40	0	40	0	42
PDB_00196	-	0.96	0.93	1.00	26	1570	0	0	0	0	2
PDB_00197	-	1.00	1.00	1.00	7	293	3	0	0	3	0
PDB_00200	-	1.00	1.00	1.00	9	201	0	0	0	0	0
PDB_00201	-	0.90	0.90	0.90	9	315	2	0	1	1	1
PDB_00202	-	1.00	1.00	1.00	14	547	1	0	0	1	0
PDB_00203	-	0.47	0.54	0.44	7	545	9	0	9	0	6
PDB_00205	-	1.00	1.00	1.00	14	421	0	0	0	0	0
PDB_00206	-	1.00	1.00	1.00	8	268	1	0	0	1	0
PDB_00207	-	0.96	0.93	1.00	13	365	0	0	0	0	1
PDB_00209	-	-0.02	0.00	0.00	0	550	11	2	9	0	11
PDB_00211	-	0.95	0.90	1.00	9	181	0	0	0	0	1
PDB_00214	-	1.00	1.00	1.00	11	395	2	0	0	2	0
PDB_00215	-	-0.02	0.00	0.00	0	1105	23	0	23	0	24
PDB_00219	-	1.00	1.00	1.00	7	203	2	0	0	2	0
PDB_00221	-	0.88	0.89	0.89	8	244	2	0	1	1	1
PDB_00224	-	1.00	1.00	1.00	8	182	0	0	0	0	0
PDB_00229	tRNA links to Rfam database...	0.47	0.52	0.43	12	2747	19	4	12	3	11
PDB_00234	-	-0.04	0.00	0.00	0	266	10	0	10	0	12
PDB_00236	-	-0.02	0.00	0.00	0	1105	23	0	23	0	24
PDB_00237	-	0.89	0.89	0.89	8	369	4	0	1	3	1
PDB_00239	-	0.97	0.94	1.00	17	803	0	0	0	0	1
PDB_00243	-	-0.02	0.00	0.00	0	615	15	1	14	0	12
PDB_00248	-	0.96	0.92	1.00	11	265	0	0	0	0	1
PDB_00249	-	0.95	0.91	1.00	10	266	0	0	0	0	1
PDB_00250	-	0.86	0.88	0.85	22	1744	6	0	4	2	3
PDB_00252	-	-0.02	0.00	0.00	0	762	19	2	16	1	15
PDB_00254	-	-0.04	0.00	0.00	0	265	11	0	11	0	12
PDB_00256	-	-0.02	0.00	0.00	0	316	9	6	3	0	4
PDB_00257	-	0.95	0.91	1.00	10	341	0	0	0	0	1
PDB_00258	-	1.00	1.00	1.00	8	245	2	0	0	2	0
PDB_00261	-	0.97	0.94	1.00	15	481	0	0	0	0	1
PDB_00262	-	0.28	0.29	0.30	7	1105	16	0	16	0	17
PDB_00264	-	-0.02	0.00	0.00	0	1107	21	0	21	0	18
PDB_00267	-	-0.04	0.00	0.00	0	365	13	0	13	0	14
PDB_00286	-	-0.03	0.00	0.00	0	183	9	0	7	2	6
PDB_00293	-	-0.01	0.00	0.00	0	1107	21	8	13	0	12
PDB_00312	-	1.00	1.00	1.00	9	426	2	0	0	2	0
PDB_00313	tRNA links to Rfam database...	0.46	0.58	0.37	11	2671	20	6	13	1	8
PDB_00317	-	1.00	1.00	1.00	10	368	1	0	0	1	0
PDB_00326	-	0.59	0.64	0.55	18	3708	19	0	15	4	10
PDB_00339	-	1.00	1.00	1.00	16	650	1	0	0	1	0
PDB_00341	-	1.00	1.00	1.00	16	687	0	0	0	0	0
PDB_00342	-	-0.02	0.00	0.00	0	761	19	0	19	0	10
PDB_00343	-	0.65	0.67	0.64	14	1574	12	0	8	4	7
PDB_00347	-	0.43	0.45	0.43	9	1155	12	1	11	0	11
PDB_00349	-	-0.02	0.00	0.00	0	926	20	2	18	0	14
PDB_00351	-	-0.02	0.00	0.00	0	547	14	3	11	0	12
PDB_00352	-	0.18	0.21	0.18	4	1203	18	1	17	0	15
PDB_00357	-	-0.02	0.00	0.00	0	764	16	6	10	0	10
PDB_00362	tRNA links to Rfam database...	0.25	0.32	0.21	7	2817	26	4	22	0	15
PDB_00365	-	1.00	1.00	1.00	14	421	0	0	0	0	0
PDB_00371	-	0.86	0.87	0.87	13	546	2	0	2	0	2
PDB_00377	-	1.00	1.00	1.00	12	516	1	0	0	1	0
PDB_00378	-	1.00	1.00	1.00	14	689	1	0	0	1	0
PDB_00392	tRNA links to Rfam database...	0.68	0.76	0.62	16	2824	13	2	8	3	5
PDB_00400	-	-0.01	0.00	0.00	0	3125	37	1	34	2	34
PDB_00402	tRNA links to Rfam database...	0.48	0.52	0.44	12	2748	18	0	15	3	11
PDB_00411	-	1.00	1.00	1.00	15	580	1	0	0	1	0
PDB_00420	-	0.80	0.80	0.80	8	486	6	0	2	4	2
PDB_00425	tRNA links to Rfam database...	0.40	0.45	0.36	10	2673	19	4	14	1	12
PDB_00430	tRNA links to Rfam database...	0.60	0.68	0.53	17	3208	17	6	9	2	8
PDB_00431	tRNA links to Rfam database...	0.34	0.40	0.30	8	2184	22	5	14	3	12
PDB_00454	-	-0.01	0.00	0.00	0	2666	35	0	35	0	32
PDB_00474	tRNA links to Rfam database...	0.61	0.65	0.58	15	2675	15	0	11	4	8
PDB_00481	-	-0.01	0.00	0.00	0	1864	27	0	27	0	26
PDB_00513	-	1.00	1.00	1.00	7	224	1	0	0	1	0
PDB_00522	-	0.51	0.56	0.48	10	1107	12	0	11	1	8
PDB_00526	-	0.33	0.33	0.33	1	297	9	0	2	7	2
PDB_00527	-	-0.02	0.00	0.00	0	290	10	3	7	0	5
PDB_00537	-	0.49	0.56	0.45	5	395	8	0	6	2	4
PDB_00553	mir-TAR links to Rfam database...	1.00	1.00	1.00	11	454	1	0	0	1	0
PDB_00570	-	-0.01	0.00	0.00	0	2251	27	8	19	0	22
PDB_00571	tRNA links to Rfam database...	-0.01	0.00	0.00	0	3287	34	3	31	0	25
PDB_00584	-	0.52	0.65	0.42	11	1459	15	3	12	0	6
PDB_00599	-	1.00	1.00	1.00	14	547	0	0	0	0	0
PDB_00603	-	1.00	1.00	1.00	10	243	0	0	0	0	0
PDB_00611	-	0.29	0.36	0.25	4	764	12	4	8	0	7
PDB_00617	-	1.00	1.00	1.00	10	266	0	0	0	0	0
PDB_00627	-	0.83	0.88	0.79	15	1634	8	0	4	4	2
PDB_00629	-	-0.02	0.00	0.00	0	1625	28	4	24	0	23
PDB_00637	-	0.90	0.90	0.90	19	2325	7	0	2	5	2
PDB_00648	-	-0.02	0.00	0.00	0	843	18	6	12	0	13
PDB_00663	-	-0.01	0.00	0.00	0	930	20	0	16	4	10
PDB_00667	tRNA links to Rfam database...	0.67	0.73	0.62	16	2824	14	0	10	4	6
PDB_00681	-	-0.02	0.00	0.00	0	1253	22	3	19	0	19
PDB_00682	-	-0.03	0.00	0.00	0	481	15	0	15	0	16
PDB_00686	-	0.97	0.95	1.00	18	685	0	0	0	0	1
PDB_00687	-	0.42	0.50	0.38	6	614	10	2	8	0	6
PDB_00692	-	0.13	0.15	0.14	3	1203	19	0	19	0	17
PDB_00693	-	0.82	0.82	0.82	14	1159	7	0	3	4	3
PDB_00698	-	1.00	1.00	1.00	19	842	0	0	0	0	0
PDB_00705	-	1.00	1.00	1.00	8	245	2	0	0	2	0
PDB_00709	-	-0.02	0.00	0.00	0	761	19	0	19	0	16
PDB_00710	-	-0.02	0.00	0.00	0	761	19	0	19	0	16
PDB_00713	-	0.21	0.24	0.21	5	1992	20	1	18	1	16
PDB_00716	HDV_ribozyme links to Rfam database...	0.22	0.26	0.19	6	2670	25	5	20	0	17
PDB_00724	-	-0.01	0.00	0.00	0	2115	30	1	29	0	29
PDB_00725	-	0.97	0.93	1.00	14	581	1	0	0	1	1
PDB_00726	-	0.43	0.44	0.44	4	342	8	0	5	3	5
PDB_00727	-	0.80	0.86	0.75	6	553	8	0	2	6	1
PDB_00728	-	0.97	0.93	1.00	14	482	0	0	0	0	1
PDB_00732	-	0.29	0.30	0.29	9	2972	26	2	20	4	21
PDB_00733	-	0.22	0.23	0.22	7	2894	27	3	22	2	23
PDB_00734	-	1.00	1.00	1.00	10	221	0	0	0	0	0
PDB_00737	-	1.00	1.00	1.00	11	340	0	0	0	0	0
PDB_00740	-	0.95	0.91	1.00	10	221	0	0	0	0	1
PDB_00741	Entero_5_CRE links to Rfam database...	1.00	1.00	1.00	17	686	0	0	0	0	0
PDB_00751	-	1.00	1.00	1.00	13	582	2	0	0	2	0
PDB_00754	-	0.32	0.42	0.26	5	1466	20	6	8	6	7
PDB_00767	-	1.00	1.00	1.00	20	2191	6	0	0	6	0
PDB_00800	-	0.32	0.34	0.32	10	2049	21	2	19	0	19
PDB_00806	-	0.75	0.72	0.78	18	1807	7	0	5	2	7
PDB_00807	-	0.82	0.78	0.86	18	1870	8	0	3	5	5
PDB_00809	-	1.00	1.00	1.00	14	482	0	0	0	0	0
PDB_00810	s2m links to Rfam database...	0.74	0.76	0.72	13	1063	7	0	5	2	4
PDB_00815	-	0.94	0.89	1.00	8	622	5	0	0	5	1
PDB_00823	-	0.94	0.89	1.00	8	182	0	0	0	0	1
PDB_00828	Purine links to Rfam database...	0.34	0.37	0.33	10	2455	22	1	19	2	17
PDB_00829	Purine links to Rfam database...	0.25	0.29	0.23	7	2248	23	6	17	0	17
PDB_00842	-	-0.02	0.00	0.00	0	369	10	0	9	1	8
PDB_00851	-	0.23	0.24	0.24	10	4711	32	0	32	0	31
PDB_00855	-	1.00	1.00	1.00	10	455	3	0	0	3	0
PDB_00857	-	-0.02	0.00	0.00	0	1062	19	6	13	0	15
PDB_00863	-	0.97	0.94	1.00	17	973	2	0	0	2	1
PDB_00865	-	1.00	1.00	1.00	12	339	0	0	0	0	0
PDB_00868	-	-0.01	0.00	0.00	0	1308	23	5	13	5	14
PDB_00870	-	-0.02	0.00	0.00	0	1105	23	0	23	0	16
PDB_00871	-	-0.02	0.00	0.00	0	1105	23	0	23	0	24
PDB_00873	-	-0.01	0.00	0.00	0	4513	47	0	47	0	48
PDB_00874	-	-0.02	0.00	0.00	0	926	20	0	20	0	20
PDB_00876	HIV_FE links to Rfam database...	0.97	0.95	1.00	19	971	0	0	0	0	1
PDB_00878	-	1.00	1.00	1.00	12	484	2	0	0	2	0
PDB_00883	-	1.00	1.00	1.00	12	618	0	0	0	0	0
PDB_00885	-	0.97	0.94	1.00	17	803	0	0	0	0	1
PDB_00886	-	-0.01	0.00	0.00	0	4143	43	4	39	0	40
PDB_00890	-	-0.02	0.00	0.00	0	686	17	2	15	0	14
PDB_00891	-	-0.02	0.00	0.00	0	927	19	6	13	0	15
PDB_00892	-	-0.01	0.00	0.00	0	2522	34	8	26	0	15
PDB_00918	-	-0.02	0.00	0.00	0	317	10	0	8	2	7
PDB_00923	-	1.00	1.00	1.00	6	184	1	0	0	1	0
PDB_00924	-	0.71	0.72	0.70	26	3618	15	0	11	4	10
PDB_00925	-	1.00	1.00	1.00	11	340	1	0	0	1	0
PDB_00928	-	0.61	0.63	0.63	5	292	5	0	3	2	3
PDB_00929	-	-0.02	0.00	0.00	0	761	19	0	19	0	20
PDB_00932	-	0.25	0.31	0.22	4	802	14	3	11	0	9
PDB_00937	-	0.97	0.94	1.00	17	613	0	0	0	0	1
PDB_00943	-	0.23	0.27	0.21	4	1412	19	4	11	4	11
PDB_00945	-	-0.02	0.00	0.00	0	452	14	4	9	1	10
PDB_00960	-	-0.03	0.00	0.00	0	394	13	2	10	1	10
PDB_00961	-	1.00	1.00	1.00	10	1760	17	0	0	17	0
PDB_00964	-	1.00	1.00	1.00	9	621	4	0	0	4	0
PDB_00966	-	-0.03	0.00	0.00	0	243	10	3	7	0	7
PDB_00973	-	-0.03	0.00	0.00	0	340	11	4	7	0	8
PDB_00974	-	1.00	1.00	1.00	9	369	0	0	0	0	0
PDB_00986	-	0.96	0.93	1.00	13	422	0	0	0	0	1
PDB_00987	-	0.97	0.94	1.00	15	546	0	0	0	0	1
PDB_01001	tRNA links to Rfam database...	0.29	0.39	0.23	7	2115	23	9	14	0	11
PDB_01002	tRNA links to Rfam database...	0.34	0.38	0.31	8	2749	22	0	18	4	13
PDB_01008	-	1.00	1.00	1.00	12	583	1	0	0	1	0
PDB_01009	tRNA links to Rfam database...	0.43	0.52	0.35	11	2454	21	5	15	1	10
PDB_01017	-	-0.03	0.00	0.00	0	422	13	0	13	0	14
PDB_01019	-	-0.03	0.00	0.00	0	422	13	0	13	0	14
PDB_01020	Purine links to Rfam database...	0.29	0.30	0.29	7	2254	20	2	15	3	16
PDB_01025	-	1.00	1.00	1.00	9	244	1	0	0	1	0
PDB_01035	-	1.00	1.00	1.00	26	1514	0	0	0	0	0
PDB_01040	-	0.28	0.30	0.29	6	1107	15	2	13	0	14
PDB_01044	-	1.00	1.00	1.00	16	930	4	0	0	4	0
PDB_01045	-	1.00	1.00	1.00	23	1202	1	0	0	1	0
PDB_01050	UnaL2 links to Rfam database...	1.00	1.00	1.00	13	617	3	0	0	3	0
PDB_01051	Telomerase-cil links to Rfam database...	1.00	1.00	1.00	13	890	5	0	0	5	0
PDB_01053	tRNA links to Rfam database...	1.00	1.00	1.00	16	1362	6	0	0	6	0
PDB_01056	-	1.00	1.00	1.00	9	244	1	0	0	1	0
PDB_01057	-	1.00	1.00	1.00	8	202	1	0	0	1	0
PDB_01059	-	-0.03	0.00	0.00	0	223	8	2	6	0	7
PDB_01060	-	-0.01	0.00	0.00	0	1985	31	0	31	0	21
PDB_01061	-	0.17	0.18	0.18	7	3121	32	0	32	0	33
PDB_01062	-	0.97	0.94	1.00	15	931	4	0	0	4	1
PDB_01065	-	0.48	0.50	0.50	5	221	5	0	5	0	5
PDB_01071	-	0.92	0.92	0.92	12	393	1	0	1	0	1
PDB_01073	SAM links to Rfam database...	0.52	0.56	0.49	19	4332	22	1	19	2	15
PDB_01074	-	-0.01	0.00	0.00	0	2739	36	3	33	0	25
PDB_01075	-	0.92	0.91	0.94	29	2384	2	0	2	0	3
PDB_01077	-	0.29	0.32	0.27	6	1931	22	1	15	6	13
PDB_01084	-	1.00	1.00	1.00	7	224	3	0	0	3	0
PDB_01097	-	1.00	1.00	1.00	8	202	1	0	0	1	0
PDB_01099	-	1.00	1.00	1.00	11	265	0	0	0	0	0
PDB_01100	-	1.00	1.00	1.00	22	1463	1	0	0	1	0
PDB_01108	-	1.00	1.00	1.00	9	222	1	0	0	1	0
PDB_01114	TPP links to Rfam database...	0.54	0.59	0.50	16	2818	18	1	15	2	11
PDB_01117	-	0.94	0.94	0.94	16	763	1	0	1	0	1
PDB_01118	-	1.00	1.00	1.00	19	1577	7	0	0	7	0
PDB_01119	-	0.93	0.93	0.93	13	616	2	0	1	1	1
PDB_01126	-	0.46	0.50	0.42	14	3048	23	5	14	4	14
PDB_01127	-	0.96	0.93	1.00	13	977	7	0	0	7	1
PDB_01128	-	0.26	0.30	0.25	8	2743	27	3	21	3	19
PDB_01130	-	-0.01	0.00	0.00	0	1743	27	7	20	0	20
PDB_01133	-	1.00	1.00	1.00	10	341	2	0	0	2	0
PDB_01135	-	-0.02	0.00	0.00	0	395	11	2	9	0	9
PDB_01137	-	-0.03	0.00	0.00	0	314	11	2	9	0	8
PDB_01138	-	-0.02	0.00	0.00	0	316	9	0	9	0	7
PDB_01145	-	1.00	1.00	1.00	14	766	4	0	0	4	0
PDB_01150	-	1.00	1.00	1.00	8	223	2	0	0	2	0
PDB_01152	HIV_FS2 links to Rfam database...	1.00	1.00	1.00	14	547	1	0	0	1	0
PDB_01154	-	0.44	0.45	0.45	5	395	8	0	6	2	6
PDB_01156	-	-0.01	0.00	0.00	0	3792	36	1	35	0	35
PDB_01160	-	0.25	0.30	0.21	6	2052	24	1	21	2	14
PDB_01162	-	-0.01	0.00	0.00	0	1521	24	6	13	5	9
PDB_01163	-	1.00	1.00	1.00	22	1013	0	0	0	0	0
PDB_01164	-	1.00	1.00	1.00	26	1514	0	0	0	0	0
PDB_01167	-	1.00	1.00	1.00	8	182	0	0	0	0	0
PDB_01168	-	1.00	1.00	1.00	8	182	0	0	0	0	0
PDB_01178	-	0.89	0.86	0.92	12	515	2	0	1	1	2
PDB_01194	-	0.66	0.60	0.75	9	484	3	0	3	0	6
PDB_01199	-	-0.01	0.00	0.00	0	2114	31	2	29	0	24
PDB_01201	-	0.75	0.68	0.83	15	1110	3	0	3	0	7
PDB_01203	-	0.73	0.74	0.74	14	1157	5	4	1	0	5
PDB_01205	-	-0.02	0.00	0.00	0	1013	22	5	17	0	18
PDB_01208	-	0.14	0.15	0.15	3	1156	17	1	16	0	17
PDB_01209	-	0.43	0.45	0.43	9	1155	12	1	11	0	11
PDB_01212	-	0.43	0.45	0.43	9	1155	12	1	11	0	11
PDB_01213	-	0.15	0.17	0.16	3	1062	16	1	15	0	15
PDB_01216	-	0.43	0.45	0.43	9	1155	12	1	11	0	11
PDB_01219	-	-0.02	0.00	0.00	0	925	21	0	21	0	20
PDB_01237	-	1.00	1.00	1.00	8	268	3	0	0	3	0
PDB_01251	-	0.96	0.92	1.00	12	313	0	0	0	0	1
PDB_01260	-	0.55	0.56	0.56	14	1805	11	1	10	0	11
PDB_01262	-	1.00	1.00	1.00	8	182	1	0	0	1	0
PDB_01281	-	-0.04	0.00	0.00	0	365	13	0	13	0	14
PDB_01299	-	0.66	0.67	0.67	10	888	7	1	4	2	5
PDB_01313	-	-0.03	0.00	0.00	0	266	10	4	6	0	8
PDB_01325	-	0.96	0.92	1.00	11	265	0	0	0	0	1
PDB_01332	-	1.00	1.00	1.00	9	342	2	0	0	2	0
PDB_01337	-	0.32	0.36	0.31	4	548	9	0	9	0	7
PDB_01338	-	-0.03	0.00	0.00	0	266	10	3	7	0	8
PDB_01340	-	1.00	1.00	1.00	8	292	0	0	0	0	0
RFA_00389	Hammerhead_3 links to Rfam database...	0.87	0.87	0.87	13	1416	9	0	2	7	2
RFA_00390	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	8	0	0	8	0
RFA_00391	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	8	0	0	8	0
RFA_00396	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	8	0	0	8	0
RFA_00402	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	8	0	0	8	0
RFA_00409	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	8	0	0	8	0
RFA_00416	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1470	9	0	0	9	0
RFA_00420	-	0.28	0.40	0.21	6	3292	31	8	15	8	9
RFA_00425	Hammerhead_3 links to Rfam database...	0.53	0.53	0.53	8	1638	14	0	7	7	7
RFA_00427	Hammerhead_3 links to Rfam database...	0.93	0.93	0.93	14	1470	9	0	1	8	1
RFA_00429	-	1.00	1.00	1.00	9	771	7	0	0	7	0
RFA_00433	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	8	0	0	8	0
RFA_00434	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	8	0	0	8	0
RFA_00436	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	8	0	0	8	0
RFA_00440	Hammerhead_3 links to Rfam database...	0.31	0.40	0.25	6	1461	19	3	15	1	9
RFA_00442	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	8	0	0	8	0
RFA_00444	Hammerhead_3 links to Rfam database...	0.33	0.40	0.29	6	1519	18	6	9	3	9
RFA_00446	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1470	9	0	0	9	0
RFA_00449	Hammerhead_3 links to Rfam database...	0.47	0.53	0.42	8	1466	15	4	7	4	7
RFA_00583	Y_RNA links to Rfam database...	0.87	0.87	0.87	13	4935	27	0	2	25	2
RFA_00584	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	2911	17	0	0	17	0
RFA_00585	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4836	29	0	0	29	0
RFA_00586	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	3901	24	0	0	24	0
RFA_00587	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4836	28	0	0	28	0
RFA_00588	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4545	27	0	0	27	0
RFA_00589	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4356	25	0	0	25	0
RFA_00594	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	2760	18	0	0	18	0
RFA_00636	HDV_ribozyme links to Rfam database...	0.36	0.39	0.34	11	3973	29	0	21	8	17
RFA_00642	Vimentin3 links to Rfam database...	-0.01	0.00	0.00	0	2894	32	7	25	0	18
RFA_00643	Vimentin3 links to Rfam database...	-0.01	0.00	0.00	0	2186	27	2	23	2	18
RFA_00644	Vimentin3 links to Rfam database...	-0.01	0.00	0.00	0	2670	33	7	24	2	18
RFA_00645	Vimentin3 links to Rfam database...	-0.01	0.00	0.00	0	2387	28	3	25	0	18
RFA_00649	Vimentin3 links to Rfam database...	0.28	0.33	0.24	6	2120	22	2	17	3	12
RFA_00651	Vimentin3 links to Rfam database...	0.25	0.28	0.24	5	2059	21	0	16	5	13
RFA_00653	Vimentin3 links to Rfam database...	-0.01	0.00	0.00	0	2115	30	4	26	0	18
RFA_00654	Vimentin3 links to Rfam database...	-0.01	0.00	0.00	0	2386	29	4	25	0	18
RFA_00658	Hammerhead_1 links to Rfam database...	0.62	0.64	0.60	9	1113	10	0	6	4	5
RFA_00659	Hammerhead_1 links to Rfam database...	0.31	0.36	0.28	5	1110	16	1	12	3	9
RFA_00664	Hammerhead_1 links to Rfam database...	-0.02	0.00	0.00	0	974	16	0	16	0	14
RFA_00667	Hammerhead_1 links to Rfam database...	0.35	0.43	0.30	6	970	15	1	13	1	8
RFA_00668	Hammerhead_1 links to Rfam database...	0.23	0.29	0.20	4	970	16	3	13	0	10
RFA_00672	Hammerhead_1 links to Rfam database...	0.69	0.77	0.63	10	887	9	0	6	3	3
RFA_00673	Hammerhead_1 links to Rfam database...	0.60	0.64	0.56	9	1112	12	0	7	5	5
RFA_00674	Hammerhead_1 links to Rfam database...	0.96	0.93	1.00	13	1115	7	0	0	7	1
RFA_00675	Hammerhead_1 links to Rfam database...	-0.02	0.00	0.00	0	974	18	0	16	2	14
RFA_00677	Hammerhead_1 links to Rfam database...	0.46	0.50	0.44	7	974	12	0	9	3	7
RFA_00678	Hammerhead_1 links to Rfam database...	0.69	0.71	0.67	10	931	8	0	5	3	4
RFA_00680	Hammerhead_1 links to Rfam database...	0.62	0.64	0.60	9	1113	11	0	6	5	5
RFA_00683	-	-0.02	0.00	0.00	0	1017	20	0	18	2	14
RFA_00684	Hammerhead_1 links to Rfam database...	0.57	0.57	0.57	8	976	10	0	6	4	6
RFA_00685	Hammerhead_1 links to Rfam database...	0.64	0.64	0.64	9	976	10	0	5	5	5
RFA_00704	Hammerhead_1 links to Rfam database...	0.37	0.43	0.33	6	972	13	1	11	1	8
RFA_00705	Hammerhead_1 links to Rfam database...	0.35	0.43	0.30	6	1015	14	4	10	0	8
RFA_00706	Hammerhead_1 links to Rfam database...	-0.02	0.00	0.00	0	1016	19	5	14	0	14
RFA_00707	Hammerhead_1 links to Rfam database...	0.36	0.43	0.32	6	1016	13	5	8	0	8
RFA_00708	Hammerhead_1 links to Rfam database...	0.64	0.64	0.64	9	1021	10	0	5	5	5
RFA_00709	Hammerhead_1 links to Rfam database...	0.38	0.43	0.35	6	973	12	0	11	1	8
RFA_00710	Hammerhead_1 links to Rfam database...	0.41	0.43	0.40	6	975	13	0	9	4	8
RFA_00711	Hammerhead_1 links to Rfam database...	-0.02	0.00	0.00	0	1017	18	5	13	0	14
RFA_00715	Hammerhead_1 links to Rfam database...	-0.02	0.00	0.00	0	929	17	0	17	0	14
RFA_00716	Hammerhead_1 links to Rfam database...	0.05	0.07	0.06	1	928	17	0	17	0	13
RFA_00717	Hammerhead_1 links to Rfam database...	0.36	0.43	0.32	6	884	13	0	13	0	8
RFA_00720	-	0.35	0.43	0.30	6	1156	15	2	12	1	8
RFA_00721	-	-0.01	0.00	0.00	0	1156	21	3	17	1	14
RFA_00730	s2m links to Rfam database...	0.33	0.42	0.28	5	885	14	5	8	1	7
RFA_00731	s2m links to Rfam database...	0.34	0.42	0.29	5	886	13	4	8	1	7
RFA_00733	s2m links to Rfam database...	0.72	0.75	0.69	9	890	10	0	4	6	3
RFA_00734	s2m links to Rfam database...	0.51	0.58	0.47	7	888	12	1	7	4	5
RFA_00736	s2m links to Rfam database...	0.34	0.42	0.29	5	886	13	4	8	1	7
RFA_00737	s2m links to Rfam database...	0.34	0.42	0.29	5	886	13	4	8	1	7
RFA_00745	s2m links to Rfam database...	0.72	0.75	0.69	9	933	11	0	4	7	3
RFA_00749	s2m links to Rfam database...	0.34	0.42	0.29	5	886	13	4	8	1	7
RFA_00758	s2m links to Rfam database...	0.59	0.67	0.53	8	888	10	2	5	3	4
RFA_00762	s2m links to Rfam database...	0.33	0.42	0.28	5	885	13	5	8	0	7
RFA_00763	s2m links to Rfam database...	0.72	0.75	0.69	9	890	10	0	4	6	3
RFA_00764	s2m links to Rfam database...	0.72	0.75	0.69	9	890	10	0	4	6	3
RFA_00765	s2m links to Rfam database...	0.72	0.75	0.69	9	890	10	0	4	6	3
RFA_00767	Corona_pk3 links to Rfam database...	0.36	0.44	0.31	8	1865	19	3	15	1	10
RFA_00768	Corona_pk3 links to Rfam database...	0.36	0.44	0.31	8	1865	19	3	15	1	10
RFA_00769	Corona_pk3 links to Rfam database...	0.45	0.50	0.41	9	1931	18	2	11	5	9
RFA_00770	Corona_pk3 links to Rfam database...	-0.01	0.00	0.00	0	1992	29	2	22	5	18
RFA_00773	Corona_pk3 links to Rfam database...	0.43	0.50	0.38	9	1929	16	4	11	1	9
RFA_00779	Corona_pk3 links to Rfam database...	0.45	0.56	0.37	10	1926	17	7	10	0	8
RFA_00808	RydC links to Rfam database...	0.39	0.44	0.35	7	1996	19	1	12	6	9
RFA_00809	RydC links to Rfam database...	0.30	0.38	0.25	6	2121	18	6	12	0	10
SPR_00007	tRNA links to Rfam database...	0.20	0.24	0.18	5	2822	26	4	19	3	16
SPR_00012	tRNA links to Rfam database...	0.20	0.25	0.17	5	2820	27	4	21	2	15
SPR_00013	tRNA links to Rfam database...	0.20	0.25	0.17	5	2820	27	4	21	2	15
SPR_00017	tRNA links to Rfam database...	0.26	0.33	0.21	7	2817	26	8	18	0	14
SPR_00020	tRNA links to Rfam database...	0.44	0.55	0.37	11	2671	20	5	14	1	9
SPR_00022	tRNA links to Rfam database...	0.26	0.33	0.21	7	2892	27	9	18	0	14
SPR_00023	tRNA links to Rfam database...	0.48	0.57	0.41	12	2821	18	5	12	1	9
SPR_00029	tRNA links to Rfam database...	0.20	0.25	0.17	5	2598	25	9	16	0	15
SPR_00030	-	0.19	0.24	0.17	5	2455	26	5	20	1	16
SPR_00032	tRNA links to Rfam database...	0.71	0.76	0.67	16	2532	14	2	6	6	5
SPR_00033	tRNA links to Rfam database...	0.50	0.57	0.44	12	2601	18	2	13	3	9
SPR_00034	-	0.50	0.57	0.44	12	2458	19	2	13	4	9
SPR_00036	tRNA links to Rfam database...	0.28	0.35	0.23	7	2745	26	7	16	3	13
SPR_00044	tRNA links to Rfam database...	0.30	0.35	0.26	7	2823	25	5	15	5	13
SPR_00045	tRNA links to Rfam database...	0.72	0.77	0.68	17	2825	11	2	6	3	5
SPR_00060	tRNA links to Rfam database...	0.43	0.52	0.37	11	2745	20	3	16	1	10
SPR_00064	tRNA links to Rfam database...	0.19	0.24	0.17	5	2820	26	3	22	1	16
SPR_00065	tRNA links to Rfam database...	0.42	0.48	0.37	10	2823	22	4	13	5	11
SPR_00066	tRNA links to Rfam database...	0.26	0.33	0.21	7	2817	26	5	21	0	14
SPR_00068	tRNA links to Rfam database...	0.71	0.76	0.67	16	2826	15	0	8	7	5
SPR_00070	tRNA links to Rfam database...	0.42	0.48	0.37	10	2823	22	4	13	5	11
SPR_00074	tRNA links to Rfam database...	0.45	0.55	0.38	11	2821	21	5	13	3	9
SPR_00078	-	-0.01	0.00	0.00	0	1863	28	8	20	0	15
SPR_00079	tRNA links to Rfam database...	0.48	0.58	0.41	11	2458	21	3	13	5	8
SPR_00080	tRNA links to Rfam database...	0.67	0.74	0.61	14	2392	13	1	8	4	5
SPR_00087	tRNA links to Rfam database...	0.46	0.55	0.39	11	2822	19	5	12	2	9
SPR_00088	tRNA links to Rfam database...	0.46	0.55	0.39	11	2822	19	5	12	2	9
SPR_00089	tRNA links to Rfam database...	0.46	0.55	0.39	11	2822	19	5	12	2	9
SPR_00090	tRNA links to Rfam database...	0.46	0.55	0.39	11	2822	19	5	12	2	9
SPR_00091	tRNA links to Rfam database...	0.46	0.55	0.39	11	2822	19	5	12	2	9
SPR_00095	tRNA links to Rfam database...	0.74	0.81	0.68	17	2825	13	0	8	5	4
SPR_00111	tRNA links to Rfam database...	0.45	0.52	0.39	11	2673	18	4	13	1	10
SPR_00112	tRNA links to Rfam database...	0.63	0.71	0.56	15	2674	15	1	11	3	6
SPR_00113	tRNA links to Rfam database...	0.50	0.60	0.43	12	2747	19	5	11	3	8
SPR_00114	tRNA links to Rfam database...	0.76	0.81	0.71	17	2677	11	2	5	4	4
SPR_00115	tRNA links to Rfam database...	0.48	0.57	0.41	12	2672	20	4	13	3	9
SPR_00116	tRNA links to Rfam database...	0.95	0.95	0.95	20	2680	9	0	1	8	1
SPR_00117	tRNA links to Rfam database...	0.68	0.76	0.62	16	2824	16	2	8	6	5
SPR_00121	tRNA links to Rfam database...	0.26	0.33	0.22	7	2743	25	4	21	0	14
SPR_00124	tRNA links to Rfam database...	0.65	0.68	0.63	15	2532	14	0	9	5	7
SPR_00126	-	-0.01	0.00	0.00	0	2055	27	2	23	2	20
SPR_00127	-	0.25	0.33	0.20	6	2385	24	6	18	0	12
SPR_00137	tRNA links to Rfam database...	0.50	0.62	0.41	13	2894	22	7	12	3	8
SPR_00139	tRNA links to Rfam database...	0.45	0.52	0.39	11	2898	23	7	10	6	10
SPR_00141	tRNA links to Rfam database...	0.20	0.25	0.17	5	2745	26	5	20	1	15
SPR_00142	-	0.50	0.58	0.44	11	2603	18	2	12	4	8
SPR_00153	tRNA links to Rfam database...	0.73	0.81	0.65	17	2900	14	2	7	5	4
SPR_00155	tRNA links to Rfam database...	0.47	0.57	0.40	12	2896	19	4	14	1	9
SPR_00156	tRNA links to Rfam database...	0.48	0.57	0.41	12	2897	20	6	11	3	9
SPR_00163	tRNA links to Rfam database...	0.47	0.57	0.40	12	2820	21	6	12	3	9
SPR_00164	tRNA links to Rfam database...	0.47	0.57	0.40	12	2896	20	4	14	2	9
SPR_00166	-	0.35	0.42	0.30	8	2529	22	5	14	3	11
SPR_00167	tRNA links to Rfam database...	-0.01	0.00	0.00	0	2527	31	3	26	2	20
SPR_00176	tRNA links to Rfam database...	0.50	0.60	0.43	12	2822	18	4	12	2	8
SPR_00177	tRNA links to Rfam database...	0.15	0.19	0.13	4	2820	27	9	17	1	17
SPR_00178	tRNA links to Rfam database...	0.26	0.33	0.21	7	2817	26	7	19	0	14
SPR_00183	-	0.28	0.35	0.23	7	2820	24	5	18	1	13
SPR_00191	tRNA links to Rfam database...	0.48	0.52	0.44	11	2825	19	3	11	5	10
SPR_00209	tRNA links to Rfam database...	0.51	0.63	0.41	12	3541	22	7	10	5	7
SPR_00215	tRNA links to Rfam database...	0.49	0.60	0.40	12	3540	25	6	12	7	8
SPR_00218	tRNA links to Rfam database...	0.45	0.60	0.34	12	3706	25	13	10	2	8
SPR_00219	tRNA links to Rfam database...	0.93	0.95	0.90	19	3720	16	0	2	14	1
SPR_00220	tRNA links to Rfam database...	0.21	0.25	0.19	5	3714	31	5	17	9	15
SPR_00223	tRNA links to Rfam database...	0.41	0.50	0.34	10	3541	26	6	13	7	10
SPR_00224	tRNA links to Rfam database...	0.51	0.60	0.44	12	3714	22	7	8	7	8
SPR_00225	tRNA links to Rfam database...	0.64	0.81	0.52	17	3708	19	9	7	3	4
SPR_00227	tRNA links to Rfam database...	0.26	0.33	0.21	7	3452	29	3	24	2	14
SPR_00228	tRNA links to Rfam database...	0.44	0.60	0.33	12	3792	27	13	11	3	8
SPR_00229	tRNA links to Rfam database...	0.88	0.90	0.86	19	3381	13	0	3	10	2
SPR_00230	tRNA links to Rfam database...	0.26	0.33	0.21	7	3536	29	3	24	2	14
SPR_00235	tRNA links to Rfam database...	0.25	0.33	0.19	7	3705	31	12	17	2	14
SPR_00236	tRNA links to Rfam database...	0.25	0.35	0.18	7	3532	31	15	16	0	13
SPR_00246	tRNA links to Rfam database...	0.48	0.55	0.42	11	2675	21	5	10	6	9
SPR_00271	tRNA links to Rfam database...	0.19	0.24	0.17	5	2820	28	4	21	3	16
SPR_00273	tRNA links to Rfam database...	0.73	0.81	0.65	17	2824	13	2	7	4	4
SPR_00276	tRNA links to Rfam database...	0.68	0.76	0.62	16	2900	15	0	10	5	5
SPR_00279	tRNA links to Rfam database...	0.43	0.52	0.37	11	2896	22	3	16	3	10
SPR_00281	-	0.31	0.41	0.25	7	1988	21	7	14	0	10
SPR_00289	tRNA links to Rfam database...	0.95	0.95	0.95	19	2906	9	0	1	8	1
SPR_00294	tRNA links to Rfam database...	0.47	0.57	0.40	12	2820	19	4	14	1	9
SPR_00295	tRNA links to Rfam database...	0.71	0.76	0.67	16	2751	13	0	8	5	5
SPR_00297	tRNA links to Rfam database...	0.19	0.24	0.16	5	2744	28	5	21	2	16
SPR_00298	tRNA links to Rfam database...	0.19	0.25	0.16	5	2743	29	4	23	2	15
SPR_00309	tRNA links to Rfam database...	0.73	0.81	0.65	17	2900	14	2	7	5	4
SPR_00314	tRNA links to Rfam database...	0.74	0.81	0.68	17	2901	13	0	8	5	4
SPR_00315	tRNA links to Rfam database...	0.45	0.52	0.39	11	2898	21	7	10	4	10
SPR_00316	tRNA links to Rfam database...	0.68	0.76	0.62	16	2900	15	2	8	5	5
SPR_00320	tRNA links to Rfam database...	0.47	0.58	0.39	11	2747	19	4	13	2	8
SPR_00321	tRNA links to Rfam database...	0.37	0.43	0.33	9	2976	24	3	15	6	12
SPR_00329	tRNA links to Rfam database...	0.39	0.48	0.33	10	2820	21	3	17	1	11
SPR_00331	tRNA links to Rfam database...	0.47	0.55	0.41	11	2748	19	4	12	3	9
SPR_00333	tRNA links to Rfam database...	0.53	0.62	0.46	13	2747	18	4	11	3	8
SPR_00339	tRNA links to Rfam database...	0.47	0.57	0.40	12	2745	21	4	14	3	9
SPR_00352	tRNA links to Rfam database...	0.26	0.33	0.22	7	2894	25	8	17	0	14
SPR_00353	tRNA links to Rfam database...	0.73	0.81	0.65	17	2824	13	2	7	4	4
SPR_00356	tRNA links to Rfam database...	0.70	0.71	0.68	15	2753	14	0	7	7	6
SPR_00358	tRNA links to Rfam database...	0.71	0.80	0.64	16	2901	13	3	6	4	4
SPR_00359	tRNA links to Rfam database...	0.23	0.27	0.21	6	2897	26	4	19	3	16
SPR_00360	tRNA links to Rfam database...	0.26	0.32	0.23	7	2670	25	7	17	1	15
SPR_00362	-	0.51	0.54	0.50	7	1417	15	0	7	8	6
SPR_00363	-	-0.01	0.00	0.00	0	1572	24	4	20	0	15
SPR_00364	-	0.47	0.55	0.41	11	2184	18	3	13	2	9
SPR_00365	-	0.54	0.59	0.50	13	2530	17	1	12	4	9
SPR_00366	-	0.41	0.45	0.38	9	2532	21	1	14	6	11
SPR_00367	-	0.45	0.50	0.41	11	2458	21	0	16	5	11
SPR_00373	tRNA links to Rfam database...	0.64	0.71	0.58	15	2824	16	2	9	5	6
SPR_00388	tRNA links to Rfam database...	0.27	0.33	0.23	7	4156	31	8	15	8	14
SPR_00393	tRNA links to Rfam database...	0.51	0.60	0.44	12	3801	22	6	9	7	8
SPR_00394	tRNA links to Rfam database...	0.58	0.62	0.54	13	3631	21	0	11	10	8
SPR_00395	tRNA links to Rfam database...	0.19	0.24	0.16	5	3973	35	6	21	8	16
SPR_00398	-	-0.01	0.00	0.00	0	2187	28	5	19	4	13
SPR_00399	-	0.23	0.31	0.18	5	2457	25	8	15	2	11
SPR_00402	tRNA links to Rfam database...	-0.01	0.00	0.00	0	2525	32	3	28	1	21
SPR_00412	tRNA links to Rfam database...	0.47	0.57	0.40	12	3625	23	7	11	5	9
SPR_00414	tRNA links to Rfam database...	0.27	0.33	0.23	7	3540	27	8	15	4	14
SPR_00415	tRNA links to Rfam database...	0.45	0.57	0.36	12	3537	23	5	16	2	9
SPR_00416	tRNA links to Rfam database...	0.39	0.48	0.32	10	3539	25	5	16	4	11
SPR_00417	tRNA links to Rfam database...	0.42	0.50	0.37	11	3540	25	7	12	6	11
SPR_00418	tRNA links to Rfam database...	0.42	0.50	0.37	11	3540	25	7	12	6	11
SPR_00426	tRNA links to Rfam database...	0.61	0.67	0.56	14	2978	19	0	11	8	7
SPR_00434	tRNA links to Rfam database...	0.65	0.71	0.60	15	2825	16	2	8	6	6
SPR_00435	tRNA links to Rfam database...	0.38	0.43	0.35	9	2824	22	2	15	5	12
SPR_00436	tRNA links to Rfam database...	0.74	0.81	0.68	17	2825	12	2	6	4	4
SPR_00437	tRNA links to Rfam database...	0.49	0.57	0.43	12	2747	19	2	14	3	9
SPR_00438	tRNA links to Rfam database...	0.48	0.57	0.41	12	2746	18	3	14	1	9
SPR_00439	tRNA links to Rfam database...	0.71	0.80	0.64	16	2676	15	1	8	6	4
SPR_00445	tRNA links to Rfam database...	0.49	0.60	0.40	12	2973	20	5	13	2	8
SPR_00452	tRNA links to Rfam database...	0.19	0.24	0.16	5	2819	27	5	21	1	16
SPR_00456	tRNA links to Rfam database...	0.48	0.57	0.41	12	2821	20	2	15	3	9
SPR_00458	tRNA links to Rfam database...	0.20	0.25	0.17	5	2820	27	5	20	2	15
SPR_00459	tRNA links to Rfam database...	0.27	0.35	0.22	7	2743	25	9	16	0	13
SPR_00461	tRNA links to Rfam database...	0.42	0.47	0.38	9	2532	20	2	13	5	10
SPR_00462	tRNA links to Rfam database...	0.28	0.37	0.23	7	2384	24	7	17	0	12
SPR_00467	tRNA links to Rfam database...	-0.01	0.00	0.00	0	2817	33	6	27	0	20
SPR_00476	tRNA links to Rfam database...	0.34	0.38	0.31	8	2749	22	3	15	4	13
SPR_00478	tRNA links to Rfam database...	0.35	0.43	0.29	9	2744	23	6	16	1	12
SPR_00479	tRNA links to Rfam database...	0.68	0.76	0.62	16	2824	16	2	8	6	5
SPR_00481	tRNA links to Rfam database...	0.26	0.33	0.22	7	2743	25	6	19	0	14
SPR_00482	tRNA links to Rfam database...	0.27	0.33	0.23	7	2670	24	7	17	0	14
SPR_00483	tRNA links to Rfam database...	0.45	0.52	0.39	11	2822	20	4	13	3	10
SPR_00489	tRNA links to Rfam database...	0.36	0.43	0.31	9	2672	21	5	15	1	12
SPR_00493	tRNA links to Rfam database...	0.46	0.50	0.42	11	2749	18	4	11	3	11
SPR_00496	tRNA links to Rfam database...	0.37	0.43	0.33	9	2748	21	0	18	3	12
SPR_00497	tRNA links to Rfam database...	0.34	0.38	0.31	8	2749	22	3	15	4	13
SPR_00498	tRNA links to Rfam database...	0.83	0.85	0.81	17	2982	12	0	4	8	3
SPR_00502	tRNA links to Rfam database...	0.45	0.52	0.39	11	2898	21	6	11	4	10
SPR_00504	tRNA links to Rfam database...	0.43	0.50	0.37	10	2823	20	6	11	3	10
SPR_00506	tRNA links to Rfam database...	0.64	0.70	0.58	14	2902	17	1	9	7	6
SPR_00509	tRNA links to Rfam database...	0.20	0.25	0.18	5	2898	28	0	23	5	15
SPR_00512	tRNA links to Rfam database...	0.64	0.70	0.58	14	2902	17	0	10	7	6
SPR_00513	tRNA links to Rfam database...	0.73	0.75	0.71	15	2905	12	0	6	6	5
SPR_00517	tRNA links to Rfam database...	0.36	0.45	0.30	9	2820	23	5	16	2	11
SPR_00518	tRNA links to Rfam database...	0.45	0.55	0.38	11	2897	20	5	13	2	9
SPR_00519	tRNA links to Rfam database...	0.55	0.57	0.55	12	2534	15	1	9	5	9
SPR_00520	tRNA links to Rfam database...	0.25	0.33	0.20	6	2526	25	7	17	1	12
SPR_00533	tRNA links to Rfam database...	0.45	0.52	0.39	11	2747	20	3	14	3	10
SPR_00541	tRNA links to Rfam database...	-0.01	0.00	0.00	0	3452	38	5	29	4	21
SPR_00542	tRNA links to Rfam database...	0.45	0.57	0.36	12	3537	23	4	17	2	9
SPR_00548	tRNA links to Rfam database...	0.49	0.57	0.43	12	3375	21	4	12	5	9
SPR_00550	tRNA links to Rfam database...	0.59	0.73	0.48	16	3795	20	9	8	3	6
SPR_00552	tRNA links to Rfam database...	-0.01	0.00	0.00	0	2669	32	6	26	0	19
SPR_00557	tRNA links to Rfam database...	0.16	0.19	0.15	4	2823	27	3	20	4	17
SPR_00561	tRNA links to Rfam database...	0.37	0.43	0.33	9	2823	24	1	17	6	12
SPR_00590	tRNA links to Rfam database...	0.49	0.60	0.41	12	2974	19	6	11	2	8
SPR_00593	tRNA links to Rfam database...	0.27	0.37	0.21	7	2741	27	7	20	0	12
SPR_00595	tRNA links to Rfam database...	0.49	0.57	0.43	12	2747	19	3	13	3	9
SPR_00598	tRNA links to Rfam database...	0.73	0.81	0.65	17	2977	14	2	7	5	4
SPR_00610	tRNA links to Rfam database...	0.51	0.57	0.46	12	2530	18	0	14	4	9
SPR_00620	tRNA links to Rfam database...	0.43	0.52	0.37	11	2973	20	7	12	1	10
SPR_00629	-	0.33	0.40	0.29	6	1870	20	1	14	5	9
SPR_00632	tRNA links to Rfam database...	0.27	0.35	0.22	7	2524	25	10	15	0	13
SPR_00633	tRNA links to Rfam database...	0.44	0.55	0.37	11	2526	20	5	14	1	9
SPR_00721	tRNA links to Rfam database...	0.19	0.24	0.16	5	2895	29	1	25	3	16
SPR_00722	tRNA links to Rfam database...	0.46	0.55	0.39	11	2898	21	5	12	4	9
SPR_00750	tRNA links to Rfam database...	0.21	0.26	0.19	5	2529	27	3	19	5	14
SPR_00760	tRNA links to Rfam database...	0.27	0.33	0.23	7	3540	28	6	17	5	14
SPR_00768	-	0.23	0.28	0.20	5	2055	23	2	18	3	13
SPR_00777	tRNA links to Rfam database...	0.45	0.55	0.38	11	2599	22	6	12	4	9
SPR_00810	tRNA links to Rfam database...	0.50	0.63	0.40	12	3540	25	7	11	7	7
SPR_00816	tRNA links to Rfam database...	0.27	0.35	0.22	7	3454	29	8	17	4	13
SPR_00832	-	-0.01	0.00	0.00	0	1627	26	5	21	0	15
SPR_00867	tRNA links to Rfam database...	0.45	0.52	0.39	11	2898	22	6	11	5	10
SPR_00868	tRNA links to Rfam database...	0.47	0.57	0.40	12	2896	19	5	13	1	9
SPR_00882	tRNA links to Rfam database...	0.20	0.25	0.17	5	2598	26	3	22	1	15
SPR_00913	tRNA links to Rfam database...	0.27	0.33	0.23	7	2972	27	4	20	3	14
SPR_00932	tRNA links to Rfam database...	0.21	0.24	0.19	5	2824	26	4	17	5	16
SPR_00938	-	-0.01	0.00	0.00	0	1628	26	5	20	1	15
SPR_00943	tRNA links to Rfam database...	0.76	0.85	0.68	17	2531	12	2	6	4	3
SPR_00957	tRNA links to Rfam database...	0.37	0.43	0.33	9	2976	24	1	17	6	12
SPR_01040	tRNA links to Rfam database...	0.76	0.81	0.71	17	2751	11	1	6	4	4
SPR_01051	tRNA links to Rfam database...	0.71	0.76	0.67	16	2532	12	0	8	4	5
SPR_01095	tRNA links to Rfam database...	0.45	0.52	0.39	11	2822	21	5	12	4	10
SPR_01103	-	0.63	0.73	0.55	11	1750	14	1	8	5	4
SPR_01106	tRNA links to Rfam database...	0.27	0.33	0.23	7	2525	24	7	17	0	14
SPR_01117	tRNA links to Rfam database...	0.41	0.48	0.36	10	2975	20	3	15	2	11
SPR_01143	tRNA links to Rfam database...	0.48	0.57	0.41	12	2527	19	2	15	2	9
SPR_01157	tRNA links to Rfam database...	0.70	0.76	0.64	16	2750	13	2	7	4	5
SRP_00005	-	0.09	0.13	0.08	3	3967	36	7	28	1	21
SRP_00042	Bacteria_small_SRP links to Rfam database...	0.43	0.48	0.40	12	3975	25	1	17	7	13
SRP_00046	Bacteria_small_SRP links to Rfam database...	0.34	0.38	0.32	12	4715	29	0	26	3	20
SRP_00083	-	0.40	0.47	0.35	14	4811	28	5	21	2	16
SRP_00094	Bacteria_small_SRP links to Rfam database...	0.28	0.33	0.24	8	4062	27	4	21	2	16
SRP_00095	Bacteria_small_SRP links to Rfam database...	0.02	0.04	0.03	1	3967	37	4	33	0	24
SRP_00101	-	0.26	0.32	0.22	8	3533	29	8	21	0	17
SRP_00107	Bacteria_small_SRP links to Rfam database...	0.11	0.16	0.09	3	3622	34	8	22	4	16
SRP_00121	Bacteria_small_SRP links to Rfam database...	0.64	0.68	0.61	17	4250	21	0	11	10	8
SRP_00132	Bacteria_small_SRP links to Rfam database...	0.62	0.66	0.59	19	4819	24	0	13	11	10
SRP_00137	Bacteria_small_SRP links to Rfam database...	0.69	0.80	0.61	20	4153	20	5	8	7	5
SRP_00138	-	0.96	0.96	0.96	26	3978	12	0	1	11	1
SRP_00139	-	0.20	0.33	0.13	4	2114	27	11	16	0	8
SRP_00161	Bacteria_small_SRP links to Rfam database...	0.35	0.41	0.31	9	2821	21	4	16	1	13
SRP_00162	Bacteria_small_SRP links to Rfam database...	0.56	0.61	0.52	14	2899	19	3	10	6	9
SRP_00163	Bacteria_small_SRP links to Rfam database...	0.63	0.69	0.58	18	3455	17	2	11	4	8
SRP_00170	Bacteria_small_SRP links to Rfam database...	0.40	0.48	0.33	12	4059	26	8	16	2	13
SRP_00194	Bacteria_small_SRP links to Rfam database...	0.68	0.71	0.65	15	3217	20	0	8	12	6
SRP_00209	Bacteria_small_SRP links to Rfam database...	0.19	0.22	0.17	6	4621	37	4	25	8	21
SRP_00213	Bacteria_small_SRP links to Rfam database...	0.32	0.40	0.27	10	4149	27	8	19	0	15
SRP_00214	-	0.90	0.92	0.88	22	3056	15	0	3	12	2
SRP_00215	Bacteria_small_SRP links to Rfam database...	0.45	0.52	0.39	13	3207	21	5	15	1	12
SRP_00216	Bacteria_small_SRP links to Rfam database...	0.76	0.81	0.71	22	3372	15	1	8	6	5
SRP_00217	Bacteria_small_SRP links to Rfam database...	0.58	0.67	0.52	16	3290	18	3	12	3	8
SRP_00219	Bacteria_small_SRP links to Rfam database...	0.61	0.70	0.53	16	3291	18	3	11	4	7
SRP_00221	-	0.70	0.76	0.64	16	3378	20	1	8	11	5
SRP_00223	-	0.50	0.60	0.43	12	3375	23	3	13	7	8
SRP_00256	-	-0.01	0.00	0.00	0	4240	39	8	30	1	22
SRP_00266	Bacteria_small_SRP links to Rfam database...	0.30	0.34	0.27	10	4619	30	3	24	3	19
SRP_00271	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	3204	36	5	31	0	24
SRP_00284	-	0.54	0.59	0.50	17	3707	20	1	16	3	12
SRP_00285	Bacteria_small_SRP links to Rfam database...	0.33	0.37	0.31	11	3705	27	2	23	2	19
SRP_00310	Bacteria_small_SRP links to Rfam database...	0.71	0.74	0.68	17	2901	15	0	8	7	6
SRP_00312	Bacteria_small_SRP links to Rfam database...	0.42	0.52	0.35	14	4146	26	6	20	0	13
SRP_00315	Bacteria_small_SRP links to Rfam database...	0.47	0.52	0.43	12	2898	20	2	14	4	11
SRP_00318	Bacteria_small_SRP links to Rfam database...	0.51	0.57	0.46	13	2975	22	0	15	7	10
SRP_00325	Bacteria_small_SRP links to Rfam database...	0.30	0.33	0.28	11	4332	33	1	27	5	22
SRP_00341	Bacteria_small_SRP links to Rfam database...	0.32	0.35	0.31	11	4717	31	0	25	6	20
SRP_00342	Bacteria_small_SRP links to Rfam database...	0.72	0.76	0.68	19	3977	21	1	8	12	6
SRP_00350	Bacteria_small_SRP links to Rfam database...	0.28	0.33	0.24	9	3879	29	3	25	1	18
SRP_00363	Bacteria_small_SRP links to Rfam database...	0.49	0.53	0.46	16	4718	29	1	18	10	14
SRP_00365	Bacteria_small_SRP links to Rfam database...	0.87	0.89	0.86	24	3375	11	0	4	7	3
SRP_00383	Bacteria_small_SRP links to Rfam database...	0.10	0.13	0.09	3	3208	33	3	26	4	21

^top

Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.

Table of contents:

Overview

Performance plots

Performance of RDfolder - scored higher in this pairwise comparison

1. Total counts & total scores for RDfolder

2. Individual counts for RDfolder [ download as .csv ]

Performance of MCFold - scored lower in this pairwise comparison

1. Total counts & total scores for MCFold

2. Individual counts for MCFold [ download as .csv ]