CompaRNA - on-line benchmarks of RNA structure prediction methods

Laboratory of Structural Bioinformatics @ Adam Mickiewicz University in Poznan

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Overview

Metric	RNAalifold(20)		RDfolder
MCC	0.883	>	0.556
Average MCC ± 95% Confidence Intervals	0.841 ± 0.037	>	0.533 ± 0.048
Sensitivity	0.795	>	0.511
Positive Predictive Value	0.982	>	0.611
Total TP	3328	>	2138
Total TN	555390	>	555280
Total FP	151	<	1509
Total FP CONTRA	9	<	213
Total FP INCONS	51	<	1147
Total FP COMP	91	<	149
Total FN	857	<	2047
P-value	3.56938820447e-08

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Performance plots

Comparison of performance of RNAalifold(20) and RDfolder. Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data (individual counts for RNAalifold(20) and RDfolder).
Average Matthews Correlation Coefficients (MCC) with 95% confidence intervals (CIs) were plotted for different RNA families, for which at least 3 members were present in the benchmarking dataset. 'n' denotes the number of MCCs used to calculate the average and CI. See tables below for raw data (individual counts for RNAalifold(20) and RDfolder).
Comparison of average Matthews Correlation Coefficients (MCCs) for RNAalifold(20) and RDfolder. The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data (individual counts for RNAalifold(20) and RDfolder).

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Performance of RNAalifold(20) - scored higher in this pairwise comparison

1. Total counts & total scores for RNAalifold(20)

Total Base Pair Counts
Total TP	3328
Total TN	555390
Total FP	151
Total FP CONTRA	9
Total FP INCONS	51
Total FP COMP	91
Total FN	857

Total Scores
MCC	0.883
Average MCC ± 95% Confidence Intervals	0.841 ± 0.037
Sensitivity	0.795
Positive Predictive Value	0.982
Nr of predictions	211

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2. Individual counts for RNAalifold(20) [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
PDB_00012	mir-TAR links to Rfam database...	1.00	1.00	1.00	7	399	2	0	0	2	0
PDB_00070	tRNA links to Rfam database...	0.93	0.88	1.00	21	2829	0	0	0	0	3
PDB_00229	tRNA links to Rfam database...	0.93	0.87	1.00	20	2755	0	0	0	0	3
PDB_00327	tRNA links to Rfam database...	0.96	0.91	1.00	21	3060	0	0	0	0	2
PDB_00362	tRNA links to Rfam database...	0.98	0.95	1.00	21	2829	0	0	0	0	1
PDB_00402	tRNA links to Rfam database...	0.96	0.91	1.00	21	2754	0	0	0	0	2
PDB_00431	tRNA links to Rfam database...	0.95	0.90	1.00	18	2193	0	0	0	0	2
PDB_00474	tRNA links to Rfam database...	0.96	0.91	1.00	21	2680	0	0	0	0	2
PDB_00553	mir-TAR links to Rfam database...	0.53	0.36	0.80	4	460	1	0	1	0	7
PDB_00571	tRNA links to Rfam database...	0.87	0.80	0.95	20	3300	1	1	0	0	5
PDB_00667	tRNA links to Rfam database...	0.98	0.95	1.00	21	2829	0	0	0	0	1
PDB_00741	Entero_5_CRE links to Rfam database...	0.72	0.53	1.00	9	694	0	0	0	0	8
PDB_00810	s2m links to Rfam database...	0.63	0.53	0.75	9	1069	4	0	3	1	8
PDB_00828	Purine links to Rfam database...	0.84	0.70	1.00	19	2466	0	0	0	0	8
PDB_00829	Purine links to Rfam database...	0.86	0.75	1.00	18	2260	0	0	0	0	6
PDB_00876	HIV_FE links to Rfam database...	0.45	0.40	0.53	8	975	7	0	7	0	12
PDB_01002	tRNA links to Rfam database...	0.93	0.86	1.00	18	2757	2	0	0	2	3
PDB_01020	Purine links to Rfam database...	0.86	0.74	1.00	17	2261	1	0	0	1	6
PDB_01050	UnaL2 links to Rfam database...	0.68	0.46	1.00	6	624	2	0	0	2	7
PDB_01053	tRNA links to Rfam database...	1.00	1.00	1.00	16	1362	0	0	0	0	0
PDB_01073	SAM links to Rfam database...	0.80	0.65	1.00	22	4349	1	0	0	1	12
PDB_01114	TPP links to Rfam database...	0.86	0.74	1.00	20	2830	0	0	0	0	7
PDB_01152	HIV_FS2 links to Rfam database...	0.76	0.64	0.90	9	551	1	0	1	0	5
RFA_00389	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	2	0	0	2	1
RFA_00390	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	3	0	0	3	1
RFA_00391	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	2	0	0	2	1
RFA_00396	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	2	0	0	2	1
RFA_00402	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	2	0	0	2	1
RFA_00409	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	2	0	0	2	1
RFA_00416	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1471	2	0	0	2	1
RFA_00433	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00434	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	2	0	0	2	1
RFA_00436	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	1	0	0	1	1
RFA_00440	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1471	3	0	0	3	1
RFA_00442	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	2	0	0	2	1
RFA_00444	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1526	2	0	0	2	1
RFA_00583	Y_RNA links to Rfam database...	0.97	0.93	1.00	14	4936	0	0	0	0	1
RFA_00584	Y_RNA links to Rfam database...	0.93	0.87	1.00	13	2913	1	0	0	1	2
RFA_00585	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4836	0	0	0	0	0
RFA_00586	Y_RNA links to Rfam database...	0.97	0.93	1.00	14	3902	1	0	0	1	1
RFA_00587	Y_RNA links to Rfam database...	0.97	0.93	1.00	14	4837	0	0	0	0	1
RFA_00588	Y_RNA links to Rfam database...	0.97	0.93	1.00	14	4546	0	0	0	0	1
RFA_00589	Y_RNA links to Rfam database...	0.97	0.93	1.00	14	4357	3	0	0	3	1
RFA_00594	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	2760	1	0	0	1	0
RFA_00658	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	1128	0	0	0	0	14
RFA_00664	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	990	0	0	0	0	14
RFA_00667	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	990	0	0	0	0	14
RFA_00668	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	990	0	0	0	0	14
RFA_00672	Hammerhead_1 links to Rfam database...	0.55	0.31	1.00	4	899	0	0	0	0	9
RFA_00673	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	1128	0	0	0	0	14
RFA_00674	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	1128	0	0	0	0	14
RFA_00675	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	990	0	0	0	0	14
RFA_00677	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	990	0	0	0	0	14
RFA_00678	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	946	0	0	0	0	14
RFA_00680	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	1128	0	0	0	0	14
RFA_00704	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	990	0	0	0	0	14
RFA_00707	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	1035	0	0	0	0	14
RFA_00715	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	946	0	0	0	0	14
RFA_00717	Hammerhead_1 links to Rfam database...	0.00	0.00	0.00	0	903	0	0	0	0	14
RFA_00730	s2m links to Rfam database...	0.75	0.75	0.75	9	891	4	0	3	1	3
RFA_00731	s2m links to Rfam database...	0.91	0.83	1.00	10	893	0	0	0	0	2
RFA_00733	s2m links to Rfam database...	1.00	1.00	1.00	12	891	0	0	0	0	0
RFA_00734	s2m links to Rfam database...	0.75	0.75	0.75	9	891	4	0	3	1	3
RFA_00736	s2m links to Rfam database...	1.00	1.00	1.00	12	891	0	0	0	0	0
RFA_00737	s2m links to Rfam database...	0.75	0.75	0.75	9	891	4	0	3	1	3
RFA_00745	s2m links to Rfam database...	0.75	0.75	0.75	9	934	4	0	3	1	3
RFA_00749	s2m links to Rfam database...	0.75	0.75	0.75	9	891	4	0	3	1	3
RFA_00758	s2m links to Rfam database...	0.75	0.75	0.75	9	891	5	0	3	2	3
RFA_00762	s2m links to Rfam database...	1.00	1.00	1.00	12	891	0	0	0	0	0
RFA_00763	s2m links to Rfam database...	1.00	1.00	1.00	12	891	1	0	0	1	0
RFA_00764	s2m links to Rfam database...	1.00	1.00	1.00	12	891	0	0	0	0	0
RFA_00765	s2m links to Rfam database...	0.75	0.75	0.75	9	891	4	0	3	1	3
SPR_00007	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00009	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	1	0	0	1	0
SPR_00010	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00012	tRNA links to Rfam database...	0.97	0.95	1.00	19	2831	1	0	0	1	1
SPR_00013	tRNA links to Rfam database...	0.97	0.95	1.00	19	2831	1	0	0	1	1
SPR_00016	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00017	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00025	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	1	0	0	1	0
SPR_00026	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00027	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00036	tRNA links to Rfam database...	0.89	0.80	1.00	16	2759	1	0	0	1	4
SPR_00045	tRNA links to Rfam database...	0.88	0.86	0.90	19	2829	2	0	2	0	3
SPR_00064	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00065	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00066	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00068	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00070	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00074	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	1	0	0	1	0
SPR_00079	tRNA links to Rfam database...	0.89	0.79	1.00	15	2470	0	0	0	0	4
SPR_00086	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00087	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	1	0	0	1	0
SPR_00088	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	1	0	0	1	0
SPR_00089	tRNA links to Rfam database...	0.97	0.95	1.00	19	2831	1	0	0	1	1
SPR_00090	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	1	0	0	1	0
SPR_00091	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	1	0	0	1	0
SPR_00095	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00111	tRNA links to Rfam database...	1.00	1.00	1.00	21	2680	0	0	0	0	0
SPR_00112	tRNA links to Rfam database...	1.00	1.00	1.00	21	2680	0	0	0	0	0
SPR_00115	tRNA links to Rfam database...	1.00	1.00	1.00	21	2680	0	0	0	0	0
SPR_00117	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00139	tRNA links to Rfam database...	0.95	0.90	1.00	19	2907	0	0	0	0	2
SPR_00153	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00155	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00156	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00176	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	1	0	0	1	0
SPR_00177	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00178	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00191	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00200	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00224	tRNA links to Rfam database...	1.00	1.00	1.00	20	3721	0	0	0	0	0
SPR_00271	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00273	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00276	tRNA links to Rfam database...	0.98	0.95	1.00	20	2906	0	0	0	0	1
SPR_00277	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00294	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00295	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	0	0	0	0	0
SPR_00314	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00315	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00317	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	1	0	0	1	0
SPR_00318	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00321	tRNA links to Rfam database...	1.00	1.00	1.00	21	2982	0	0	0	0	0
SPR_00333	tRNA links to Rfam database...	0.98	0.95	1.00	20	2755	0	0	0	0	1
SPR_00352	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00353	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00357	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00358	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	1	0	0	1	0
SPR_00370	tRNA links to Rfam database...	0.95	0.90	1.00	19	2756	0	0	0	0	2
SPR_00386	tRNA links to Rfam database...	1.00	1.00	1.00	20	4166	0	0	0	0	0
SPR_00414	tRNA links to Rfam database...	1.00	1.00	1.00	21	3549	4	0	0	4	0
SPR_00415	tRNA links to Rfam database...	1.00	1.00	1.00	21	3549	4	0	0	4	0
SPR_00417	tRNA links to Rfam database...	0.95	0.91	1.00	20	3550	4	0	0	4	2
SPR_00418	tRNA links to Rfam database...	0.95	0.91	1.00	20	3550	4	0	0	4	2
SPR_00434	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00435	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00436	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00437	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	0	0	0	0	0
SPR_00438	tRNA links to Rfam database...	0.98	0.95	1.00	20	2755	0	0	0	0	1
SPR_00452	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00455	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00456	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00476	tRNA links to Rfam database...	0.98	0.95	1.00	20	2755	0	0	0	0	1
SPR_00479	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00482	tRNA links to Rfam database...	1.00	1.00	1.00	21	2680	0	0	0	0	0
SPR_00483	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00487	tRNA links to Rfam database...	0.88	0.86	0.90	19	2680	2	0	2	0	3
SPR_00493	tRNA links to Rfam database...	0.93	0.86	1.00	19	2756	0	0	0	0	3
SPR_00496	tRNA links to Rfam database...	0.98	0.95	1.00	20	2755	0	0	0	0	1
SPR_00497	tRNA links to Rfam database...	0.98	0.95	1.00	20	2755	0	0	0	0	1
SPR_00502	tRNA links to Rfam database...	0.98	0.95	1.00	20	2906	0	0	0	0	1
SPR_00504	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	0	0	0	0	0
SPR_00505	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00506	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00509	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00512	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00513	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00518	tRNA links to Rfam database...	0.97	0.95	1.00	19	2907	0	0	0	0	1
SPR_00548	tRNA links to Rfam database...	0.98	0.95	1.00	20	3383	0	0	0	0	1
SPR_00557	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00561	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00590	tRNA links to Rfam database...	1.00	1.00	1.00	20	2983	0	0	0	0	0
SPR_00593	tRNA links to Rfam database...	1.00	1.00	1.00	19	2756	2	0	0	2	0
SPR_00595	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	0	0	0	0	0
SPR_00598	tRNA links to Rfam database...	1.00	1.00	1.00	21	2982	0	0	0	0	0
SPR_00610	tRNA links to Rfam database...	0.90	0.81	1.00	17	2539	0	0	0	0	4
SPR_00620	tRNA links to Rfam database...	0.98	0.95	1.00	20	2983	0	0	0	0	1
SPR_00721	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00722	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	1	0	0	1	0
SPR_00758	tRNA links to Rfam database...	1.00	1.00	1.00	21	2982	0	0	0	0	0
SPR_00760	tRNA links to Rfam database...	1.00	1.00	1.00	21	3549	0	0	0	0	0
SPR_00777	tRNA links to Rfam database...	1.00	1.00	1.00	20	2608	1	0	0	1	0
SPR_00867	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00868	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00943	tRNA links to Rfam database...	1.00	1.00	1.00	20	2536	0	0	0	0	0
SPR_00957	tRNA links to Rfam database...	1.00	1.00	1.00	21	2982	0	0	0	0	0
SPR_01040	tRNA links to Rfam database...	0.98	0.95	1.00	20	2755	0	0	0	0	1
SPR_01088	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_01095	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_01106	tRNA links to Rfam database...	1.00	1.00	1.00	21	2535	0	0	0	0	0
SPR_01117	tRNA links to Rfam database...	0.98	0.95	1.00	20	2983	0	0	0	0	1
SPR_01157	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	0	0	0	0	0
SRP_00008	Bacteria_small_SRP links to Rfam database...	0.77	0.60	1.00	15	2911	0	0	0	0	10
SRP_00042	Bacteria_small_SRP links to Rfam database...	0.75	0.64	0.89	16	3987	3	1	1	1	9
SRP_00046	Bacteria_small_SRP links to Rfam database...	0.47	0.22	1.00	7	4746	0	0	0	0	25
SRP_00094	Bacteria_small_SRP links to Rfam database...	0.84	0.71	1.00	17	4078	0	0	0	0	7
SRP_00095	Bacteria_small_SRP links to Rfam database...	0.62	0.48	0.80	12	3990	3	2	1	0	13
SRP_00107	Bacteria_small_SRP links to Rfam database...	0.56	0.32	1.00	6	3649	0	0	0	0	13
SRP_00121	Bacteria_small_SRP links to Rfam database...	0.53	0.28	1.00	7	4271	0	0	0	0	18
SRP_00132	Bacteria_small_SRP links to Rfam database...	0.49	0.24	1.00	7	4844	0	0	0	0	22
SRP_00161	Bacteria_small_SRP links to Rfam database...	0.56	0.32	1.00	7	2843	0	0	0	0	15
SRP_00162	Bacteria_small_SRP links to Rfam database...	0.55	0.30	1.00	7	2919	0	0	0	0	16
SRP_00163	Bacteria_small_SRP links to Rfam database...	0.52	0.27	1.00	7	3479	0	0	0	0	19
SRP_00170	Bacteria_small_SRP links to Rfam database...	0.71	0.60	0.83	15	4077	5	1	2	2	10
SRP_00194	Bacteria_small_SRP links to Rfam database...	0.53	0.29	1.00	6	3234	0	0	0	0	15
SRP_00209	Bacteria_small_SRP links to Rfam database...	0.70	0.56	0.88	15	4639	3	1	1	1	12
SRP_00213	Bacteria_small_SRP links to Rfam database...	0.69	0.52	0.93	13	4172	1	0	1	0	12
SRP_00215	Bacteria_small_SRP links to Rfam database...	0.53	0.28	1.00	7	3233	0	0	0	0	18
SRP_00266	Bacteria_small_SRP links to Rfam database...	0.49	0.24	1.00	7	4649	0	0	0	0	22
SRP_00268	Bacteria_small_SRP links to Rfam database...	0.73	0.63	0.85	17	4166	3	1	2	0	10
SRP_00270	Bacteria_small_SRP links to Rfam database...	0.44	0.19	1.00	6	4650	1	0	0	1	25
SRP_00271	Bacteria_small_SRP links to Rfam database...	0.54	0.29	1.00	7	3233	0	0	0	0	17
SRP_00310	Bacteria_small_SRP links to Rfam database...	0.55	0.30	1.00	7	2919	0	0	0	0	16
SRP_00312	Bacteria_small_SRP links to Rfam database...	0.77	0.67	0.90	18	4166	3	1	1	1	9
SRP_00315	Bacteria_small_SRP links to Rfam database...	0.74	0.65	0.83	15	2908	3	0	3	0	8
SRP_00318	Bacteria_small_SRP links to Rfam database...	0.55	0.30	1.00	7	2996	0	0	0	0	16
SRP_00325	Bacteria_small_SRP links to Rfam database...	0.46	0.21	1.00	7	4364	0	0	0	0	26
SRP_00341	Bacteria_small_SRP links to Rfam database...	0.47	0.23	1.00	7	4746	0	0	0	0	24
SRP_00342	Bacteria_small_SRP links to Rfam database...	0.49	0.24	1.00	6	3999	0	0	0	0	19
SRP_00350	Bacteria_small_SRP links to Rfam database...	0.73	0.63	0.85	17	3896	3	1	2	0	10
SRP_00383	Bacteria_small_SRP links to Rfam database...	0.54	0.29	1.00	7	3233	0	0	0	0	17

^top

Performance of RDfolder - scored lower in this pairwise comparison

1. Total counts & total scores for RDfolder

Total Base Pair Counts
Total TP	2138
Total TN	555280
Total FP	1509
Total FP CONTRA	213
Total FP INCONS	1147
Total FP COMP	149
Total FN	2047

Total Scores
MCC	0.556
Average MCC ± 95% Confidence Intervals	0.533 ± 0.048
Sensitivity	0.511
Positive Predictive Value	0.611
Nr of predictions	211

^top

2. Individual counts for RDfolder [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
PDB_00012	mir-TAR links to Rfam database...	1.00	1.00	1.00	7	399	3	0	0	3	0
PDB_00070	tRNA links to Rfam database...	0.31	0.29	0.35	7	2830	13	0	13	0	17
PDB_00229	tRNA links to Rfam database...	0.96	0.91	1.00	21	2754	0	0	0	0	2
PDB_00327	tRNA links to Rfam database...	0.36	0.30	0.44	7	3065	9	0	9	0	16
PDB_00362	tRNA links to Rfam database...	0.98	0.95	1.00	21	2829	0	0	0	0	1
PDB_00402	tRNA links to Rfam database...	0.47	0.39	0.56	9	2759	7	0	7	0	14
PDB_00431	tRNA links to Rfam database...	0.40	0.30	0.55	6	2200	5	0	5	0	14
PDB_00474	tRNA links to Rfam database...	0.40	0.39	0.43	9	2680	14	1	11	2	14
PDB_00553	mir-TAR links to Rfam database...	1.00	1.00	1.00	11	454	0	0	0	0	0
PDB_00571	tRNA links to Rfam database...	0.39	0.36	0.43	9	3300	12	0	12	0	16
PDB_00667	tRNA links to Rfam database...	0.93	0.86	1.00	19	2831	2	0	0	2	3
PDB_00741	Entero_5_CRE links to Rfam database...	0.84	0.71	1.00	12	691	0	0	0	0	5
PDB_00810	s2m links to Rfam database...	-0.01	0.00	0.00	0	1078	3	0	3	0	17
PDB_00828	Purine links to Rfam database...	0.88	0.78	1.00	21	2464	0	0	0	0	6
PDB_00829	Purine links to Rfam database...	0.86	0.75	1.00	18	2260	0	0	0	0	6
PDB_00876	HIV_FE links to Rfam database...	0.97	0.95	1.00	19	971	0	0	0	0	1
PDB_01002	tRNA links to Rfam database...	0.22	0.19	0.27	4	2760	12	0	11	1	17
PDB_01020	Purine links to Rfam database...	0.86	0.74	1.00	17	2261	1	0	0	1	6
PDB_01050	UnaL2 links to Rfam database...	0.92	0.85	1.00	11	619	2	0	0	2	2
PDB_01053	tRNA links to Rfam database...	0.46	0.44	0.50	7	1364	7	2	5	0	9
PDB_01073	SAM links to Rfam database...	0.43	0.38	0.50	13	4345	13	1	12	0	21
PDB_01114	TPP links to Rfam database...	0.27	0.22	0.35	6	2833	11	1	10	0	21
PDB_01152	HIV_FS2 links to Rfam database...	0.88	0.79	1.00	11	550	0	0	0	0	3
RFA_00389	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	1	0	0	1	0
RFA_00390	Hammerhead_3 links to Rfam database...	0.33	0.33	0.33	5	1416	10	1	9	0	10
RFA_00391	Hammerhead_3 links to Rfam database...	0.51	0.27	1.00	4	1427	1	0	0	1	11
RFA_00396	Hammerhead_3 links to Rfam database...	0.63	0.40	1.00	6	1425	0	0	0	0	9
RFA_00402	Hammerhead_3 links to Rfam database...	0.40	0.33	0.50	5	1421	5	0	5	0	10
RFA_00409	Hammerhead_3 links to Rfam database...	0.77	0.60	1.00	9	1422	1	0	0	1	6
RFA_00416	Hammerhead_3 links to Rfam database...	0.77	0.60	1.00	9	1476	1	0	0	1	6
RFA_00433	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00434	Hammerhead_3 links to Rfam database...	0.39	0.40	0.40	6	1416	10	3	6	1	9
RFA_00436	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00440	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1470	2	0	0	2	0
RFA_00442	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00444	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1525	1	0	0	1	0
RFA_00583	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4935	10	0	0	10	0
RFA_00584	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	2911	7	0	0	7	0
RFA_00585	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4836	11	0	0	11	0
RFA_00586	Y_RNA links to Rfam database...	0.00	0.00	0.00	0	3910	6	0	6	0	15
RFA_00587	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4836	11	0	0	11	0
RFA_00588	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4545	13	0	0	13	0
RFA_00589	Y_RNA links to Rfam database...	0.97	0.93	1.00	14	4357	14	0	0	14	1
RFA_00594	Y_RNA links to Rfam database...	0.90	0.87	0.93	13	2761	7	0	1	6	2
RFA_00658	Hammerhead_1 links to Rfam database...	0.59	0.50	0.70	7	1118	5	0	3	2	7
RFA_00664	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	980	10	0	10	0	14
RFA_00667	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	982	8	1	7	0	14
RFA_00668	Hammerhead_1 links to Rfam database...	0.50	0.43	0.60	6	980	4	0	4	0	8
RFA_00672	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	897	6	0	6	0	13
RFA_00673	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	1125	3	0	3	0	14
RFA_00674	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	1122	6	0	6	0	14
RFA_00675	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	985	5	0	5	0	14
RFA_00677	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	984	6	0	6	0	14
RFA_00678	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	941	5	0	5	0	14
RFA_00680	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	1121	7	2	5	0	14
RFA_00704	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	983	7	0	7	0	14
RFA_00707	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	1030	5	0	5	0	14
RFA_00715	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	940	6	0	6	0	14
RFA_00717	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	898	5	0	5	0	14
RFA_00730	s2m links to Rfam database...	-0.01	0.00	0.00	0	897	6	1	5	0	12
RFA_00731	s2m links to Rfam database...	0.41	0.42	0.42	5	891	8	3	4	1	7
RFA_00733	s2m links to Rfam database...	-0.01	0.00	0.00	0	898	5	0	5	0	12
RFA_00734	s2m links to Rfam database...	0.67	0.58	0.78	7	894	3	0	2	1	5
RFA_00736	s2m links to Rfam database...	0.43	0.42	0.45	5	892	7	1	5	1	7
RFA_00737	s2m links to Rfam database...	0.43	0.42	0.45	5	892	7	2	4	1	7
RFA_00745	s2m links to Rfam database...	-0.01	0.00	0.00	0	938	8	2	6	0	12
RFA_00749	s2m links to Rfam database...	0.43	0.42	0.45	5	892	7	1	5	1	7
RFA_00758	s2m links to Rfam database...	-0.01	0.00	0.00	0	900	3	0	3	0	12
RFA_00762	s2m links to Rfam database...	-0.01	0.00	0.00	0	894	9	2	7	0	12
RFA_00763	s2m links to Rfam database...	-0.01	0.00	0.00	0	897	6	1	5	0	12
RFA_00764	s2m links to Rfam database...	0.51	0.42	0.63	5	895	4	1	2	1	7
RFA_00765	s2m links to Rfam database...	0.43	0.42	0.45	5	892	7	2	4	1	7
SPR_00007	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00009	tRNA links to Rfam database...	0.97	0.95	1.00	19	2831	0	0	0	0	1
SPR_00010	tRNA links to Rfam database...	0.28	0.24	0.33	5	2835	10	4	6	0	16
SPR_00012	tRNA links to Rfam database...	0.95	0.90	1.00	18	2832	0	0	0	0	2
SPR_00013	tRNA links to Rfam database...	0.95	0.90	1.00	18	2832	0	0	0	0	2
SPR_00016	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00017	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00025	tRNA links to Rfam database...	0.34	0.35	0.33	7	2905	15	4	10	1	13
SPR_00026	tRNA links to Rfam database...	0.61	0.57	0.67	12	2908	6	2	4	0	9
SPR_00027	tRNA links to Rfam database...	0.80	0.76	0.84	16	2907	3	1	2	0	5
SPR_00036	tRNA links to Rfam database...	0.82	0.80	0.84	16	2756	3	0	3	0	4
SPR_00045	tRNA links to Rfam database...	0.93	0.91	0.95	20	2829	1	0	1	0	2
SPR_00064	tRNA links to Rfam database...	0.60	0.57	0.63	12	2831	7	0	7	0	9
SPR_00065	tRNA links to Rfam database...	0.53	0.48	0.59	10	2833	7	1	6	0	11
SPR_00066	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00068	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00070	tRNA links to Rfam database...	0.46	0.43	0.50	9	2832	11	0	9	2	12
SPR_00074	tRNA links to Rfam database...	0.97	0.95	1.00	19	2831	1	0	0	1	1
SPR_00079	tRNA links to Rfam database...	-0.01	0.00	0.00	0	2473	12	0	12	0	19
SPR_00086	tRNA links to Rfam database...	0.57	0.57	0.57	12	2829	9	4	5	0	9
SPR_00087	tRNA links to Rfam database...	0.76	0.70	0.82	14	2833	3	1	2	0	6
SPR_00088	tRNA links to Rfam database...	0.56	0.50	0.63	10	2834	6	3	3	0	10
SPR_00089	tRNA links to Rfam database...	0.76	0.70	0.82	14	2833	3	1	2	0	6
SPR_00090	tRNA links to Rfam database...	-0.01	0.00	0.00	0	2834	16	6	10	0	20
SPR_00091	tRNA links to Rfam database...	0.45	0.45	0.45	9	2830	11	3	8	0	11
SPR_00095	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00111	tRNA links to Rfam database...	0.48	0.48	0.50	10	2681	11	3	7	1	11
SPR_00112	tRNA links to Rfam database...	0.98	0.95	1.00	20	2681	2	0	0	2	1
SPR_00115	tRNA links to Rfam database...	0.61	0.57	0.67	12	2683	6	2	4	0	9
SPR_00117	tRNA links to Rfam database...	0.68	0.71	0.65	15	2827	8	1	7	0	6
SPR_00139	tRNA links to Rfam database...	0.56	0.52	0.61	11	2908	8	2	5	1	10
SPR_00153	tRNA links to Rfam database...	0.21	0.19	0.24	4	2909	13	3	10	0	17
SPR_00155	tRNA links to Rfam database...	0.22	0.19	0.27	4	2911	11	1	10	0	17
SPR_00156	tRNA links to Rfam database...	0.20	0.19	0.22	4	2908	14	0	14	0	17
SPR_00176	tRNA links to Rfam database...	0.60	0.50	0.71	10	2836	4	3	1	0	10
SPR_00177	tRNA links to Rfam database...	0.60	0.57	0.63	12	2831	7	2	5	0	9
SPR_00178	tRNA links to Rfam database...	0.22	0.24	0.22	5	2827	18	7	11	0	16
SPR_00191	tRNA links to Rfam database...	0.78	0.76	0.80	16	2830	4	0	4	0	5
SPR_00200	tRNA links to Rfam database...	0.53	0.48	0.59	10	2833	7	1	6	0	11
SPR_00224	tRNA links to Rfam database...	0.26	0.25	0.28	5	3723	15	5	8	2	15
SPR_00271	tRNA links to Rfam database...	0.33	0.33	0.33	7	2829	14	4	10	0	14
SPR_00273	tRNA links to Rfam database...	0.95	0.90	1.00	19	2831	0	0	0	0	2
SPR_00276	tRNA links to Rfam database...	0.95	0.90	1.00	19	2907	0	0	0	0	2
SPR_00277	tRNA links to Rfam database...	0.98	0.95	1.00	20	2906	0	0	0	0	1
SPR_00294	tRNA links to Rfam database...	0.58	0.57	0.60	12	2830	8	4	4	0	9
SPR_00295	tRNA links to Rfam database...	0.30	0.24	0.38	5	2762	8	0	8	0	16
SPR_00314	tRNA links to Rfam database...	0.98	0.95	1.00	20	2906	1	0	0	1	1
SPR_00315	tRNA links to Rfam database...	0.53	0.52	0.55	11	2906	9	3	6	0	10
SPR_00317	tRNA links to Rfam database...	0.53	0.55	0.52	11	2905	10	5	5	0	9
SPR_00318	tRNA links to Rfam database...	0.78	0.76	0.80	16	2906	5	2	2	1	5
SPR_00321	tRNA links to Rfam database...	0.28	0.24	0.33	5	2988	10	4	6	0	16
SPR_00333	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	0	0	0	0	0
SPR_00352	tRNA links to Rfam database...	-0.01	0.00	0.00	0	2907	19	3	16	0	21
SPR_00353	tRNA links to Rfam database...	0.25	0.24	0.26	5	2831	14	2	12	0	16
SPR_00357	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00358	tRNA links to Rfam database...	0.82	0.80	0.84	16	2907	3	1	2	0	4
SPR_00370	tRNA links to Rfam database...	0.98	0.95	1.00	20	2755	0	0	0	0	1
SPR_00386	tRNA links to Rfam database...	0.32	0.25	0.42	5	4174	10	2	5	3	15
SPR_00414	tRNA links to Rfam database...	0.50	0.48	0.53	10	3551	9	3	6	0	11
SPR_00415	tRNA links to Rfam database...	0.83	0.81	0.85	17	3550	3	1	2	0	4
SPR_00417	tRNA links to Rfam database...	0.23	0.23	0.25	5	3550	15	0	15	0	17
SPR_00418	tRNA links to Rfam database...	0.56	0.55	0.57	12	3549	9	2	7	0	10
SPR_00434	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00435	tRNA links to Rfam database...	0.68	0.67	0.70	14	2830	6	2	4	0	7
SPR_00436	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	2	0	0	2	0
SPR_00437	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	2	0	0	2	0
SPR_00438	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	0	0	0	0	0
SPR_00452	tRNA links to Rfam database...	0.46	0.43	0.50	9	2832	9	0	9	0	12
SPR_00455	tRNA links to Rfam database...	0.76	0.76	0.76	16	2829	6	0	5	1	5
SPR_00456	tRNA links to Rfam database...	0.57	0.57	0.57	12	2829	11	1	8	2	9
SPR_00476	tRNA links to Rfam database...	0.19	0.19	0.21	4	2756	15	0	15	0	17
SPR_00479	tRNA links to Rfam database...	0.85	0.81	0.89	17	2831	3	0	2	1	4
SPR_00482	tRNA links to Rfam database...	0.98	0.95	1.00	20	2681	0	0	0	0	1
SPR_00483	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00487	tRNA links to Rfam database...	-0.01	0.00	0.00	0	2686	15	4	11	0	22
SPR_00493	tRNA links to Rfam database...	0.79	0.77	0.81	17	2754	4	2	2	0	5
SPR_00496	tRNA links to Rfam database...	0.21	0.19	0.25	4	2759	12	0	12	0	17
SPR_00497	tRNA links to Rfam database...	0.19	0.19	0.21	4	2756	15	0	15	0	17
SPR_00502	tRNA links to Rfam database...	0.53	0.52	0.55	11	2906	9	0	9	0	10
SPR_00504	tRNA links to Rfam database...	0.28	0.25	0.33	5	2835	10	2	8	0	15
SPR_00505	tRNA links to Rfam database...	0.97	0.95	1.00	19	2907	0	0	0	0	1
SPR_00506	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00509	tRNA links to Rfam database...	0.51	0.50	0.53	10	2907	9	0	9	0	10
SPR_00512	tRNA links to Rfam database...	0.30	0.30	0.30	6	2906	14	4	10	0	14
SPR_00513	tRNA links to Rfam database...	0.21	0.20	0.24	4	2909	13	3	10	0	16
SPR_00518	tRNA links to Rfam database...	0.97	0.95	1.00	19	2907	0	0	0	0	1
SPR_00548	tRNA links to Rfam database...	0.79	0.81	0.77	17	3381	5	2	3	0	4
SPR_00557	tRNA links to Rfam database...	0.21	0.19	0.24	4	2833	13	1	12	0	17
SPR_00561	tRNA links to Rfam database...	0.37	0.38	0.36	8	2828	14	1	13	0	13
SPR_00590	tRNA links to Rfam database...	0.80	0.80	0.80	16	2983	4	4	0	0	4
SPR_00593	tRNA links to Rfam database...	0.34	0.37	0.32	7	2753	15	7	8	0	12
SPR_00595	tRNA links to Rfam database...	0.98	0.95	1.00	20	2755	0	0	0	0	1
SPR_00598	tRNA links to Rfam database...	0.33	0.33	0.33	7	2982	14	1	13	0	14
SPR_00610	tRNA links to Rfam database...	0.90	0.81	1.00	17	2539	1	0	0	1	4
SPR_00620	tRNA links to Rfam database...	0.25	0.24	0.28	5	2985	16	0	13	3	16
SPR_00721	tRNA links to Rfam database...	0.98	0.95	1.00	20	2906	1	0	0	1	1
SPR_00722	tRNA links to Rfam database...	0.75	0.75	0.75	15	2906	5	4	1	0	5
SPR_00758	tRNA links to Rfam database...	0.58	0.57	0.60	12	2983	8	1	7	0	9
SPR_00760	tRNA links to Rfam database...	0.20	0.19	0.22	4	3552	14	0	14	0	17
SPR_00777	tRNA links to Rfam database...	-0.01	0.00	0.00	0	2613	15	1	14	0	20
SPR_00867	tRNA links to Rfam database...	0.25	0.24	0.26	5	2907	14	2	12	0	16
SPR_00868	tRNA links to Rfam database...	0.28	0.24	0.33	5	2911	11	0	10	1	16
SPR_00943	tRNA links to Rfam database...	0.92	0.85	1.00	17	2539	1	0	0	1	3
SPR_00957	tRNA links to Rfam database...	0.58	0.57	0.60	12	2983	9	1	7	1	9
SPR_01040	tRNA links to Rfam database...	0.56	0.48	0.67	10	2760	6	0	5	1	11
SPR_01088	tRNA links to Rfam database...	0.53	0.57	0.50	12	2902	12	4	8	0	9
SPR_01095	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_01106	tRNA links to Rfam database...	-0.01	0.00	0.00	0	2540	16	4	12	0	21
SPR_01117	tRNA links to Rfam database...	0.76	0.76	0.76	16	2982	6	0	5	1	5
SPR_01157	tRNA links to Rfam database...	0.81	0.81	0.81	17	2754	5	3	1	1	4
SRP_00008	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	2910	17	0	16	1	25
SRP_00042	Bacteria_small_SRP links to Rfam database...	0.50	0.48	0.52	12	3982	12	0	11	1	13
SRP_00046	Bacteria_small_SRP links to Rfam database...	0.60	0.53	0.68	17	4728	9	0	8	1	15
SRP_00094	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	4076	19	3	16	0	24
SRP_00095	Bacteria_small_SRP links to Rfam database...	0.28	0.28	0.29	7	3981	17	3	14	0	18
SRP_00107	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	3632	25	6	17	2	19
SRP_00121	Bacteria_small_SRP links to Rfam database...	0.50	0.44	0.58	11	4259	8	1	7	0	14
SRP_00132	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	4827	25	2	22	1	29
SRP_00161	Bacteria_small_SRP links to Rfam database...	0.55	0.41	0.75	9	2838	3	0	3	0	13
SRP_00162	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	2911	15	1	14	0	23
SRP_00163	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	3472	14	0	14	0	26
SRP_00170	Bacteria_small_SRP links to Rfam database...	0.40	0.32	0.50	8	4079	9	3	5	1	17
SRP_00194	Bacteria_small_SRP links to Rfam database...	0.50	0.43	0.60	9	3225	6	0	6	0	12
SRP_00209	Bacteria_small_SRP links to Rfam database...	0.57	0.56	0.60	15	4631	10	2	8	0	12
SRP_00213	Bacteria_small_SRP links to Rfam database...	0.41	0.40	0.43	10	4163	13	3	10	0	15
SRP_00215	Bacteria_small_SRP links to Rfam database...	0.63	0.52	0.76	13	3223	4	0	4	0	12
SRP_00266	Bacteria_small_SRP links to Rfam database...	0.48	0.31	0.75	9	4644	4	0	3	1	20
SRP_00268	Bacteria_small_SRP links to Rfam database...	0.37	0.37	0.38	10	4160	16	2	14	0	17
SRP_00270	Bacteria_small_SRP links to Rfam database...	0.47	0.45	0.50	14	4628	14	3	11	0	17
SRP_00271	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	3220	20	1	19	0	24
SRP_00310	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	2921	5	1	4	0	23
SRP_00312	Bacteria_small_SRP links to Rfam database...	0.87	0.85	0.88	23	4160	3	0	3	0	4
SRP_00315	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	2912	14	0	14	0	23
SRP_00318	Bacteria_small_SRP links to Rfam database...	0.16	0.13	0.21	3	2989	11	1	10	0	20
SRP_00325	Bacteria_small_SRP links to Rfam database...	0.45	0.39	0.52	13	4346	12	1	11	0	20
SRP_00341	Bacteria_small_SRP links to Rfam database...	0.33	0.29	0.38	9	4729	15	0	15	0	22
SRP_00342	Bacteria_small_SRP links to Rfam database...	0.51	0.48	0.55	12	3983	10	2	8	0	13
SRP_00350	Bacteria_small_SRP links to Rfam database...	0.82	0.78	0.88	21	3892	4	0	3	1	6
SRP_00383	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	3223	17	0	17	0	24

^top

Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.

Table of contents:

Overview

Performance plots

Performance of RNAalifold(20) - scored higher in this pairwise comparison

1. Total counts & total scores for RNAalifold(20)

2. Individual counts for RNAalifold(20) [ download as .csv ]

Performance of RDfolder - scored lower in this pairwise comparison

1. Total counts & total scores for RDfolder

2. Individual counts for RDfolder [ download as .csv ]