CompaRNA - on-line benchmarks of RNA structure prediction methods

Laboratory of Structural Bioinformatics @ Adam Mickiewicz University in Poznan

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Overview

Metric	RSpredict(20)		McQFold
MCC	0.789	>	0.610
Average MCC ± 95% Confidence Intervals	0.777 ± 0.026	>	0.645 ± 0.033
Sensitivity	0.693	>	0.587
Positive Predictive Value	0.901	>	0.639
Total TP	5647	>	4783
Total TN	1290754	>	1289544
Total FP	908	<	3019
Total FP CONTRA	38	<	429
Total FP INCONS	585	<	2268
Total FP COMP	285	<	322
Total FN	2497	<	3361
P-value	3.56938820447e-08

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Performance plots

Comparison of performance of RSpredict(20) and McQFold. Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data (individual counts for RSpredict(20) and McQFold).
Average Matthews Correlation Coefficients (MCC) with 95% confidence intervals (CIs) were plotted for different RNA families, for which at least 3 members were present in the benchmarking dataset. 'n' denotes the number of MCCs used to calculate the average and CI. See tables below for raw data (individual counts for RSpredict(20) and McQFold).
Comparison of average Matthews Correlation Coefficients (MCCs) for RSpredict(20) and McQFold. The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data (individual counts for RSpredict(20) and McQFold).

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Performance of RSpredict(20) - scored higher in this pairwise comparison

1. Total counts & total scores for RSpredict(20)

Total Base Pair Counts
Total TP	5647
Total TN	1290754
Total FP	908
Total FP CONTRA	38
Total FP INCONS	585
Total FP COMP	285
Total FN	2497

Total Scores
MCC	0.789
Average MCC ± 95% Confidence Intervals	0.777 ± 0.026
Sensitivity	0.693
Positive Predictive Value	0.901
Nr of predictions	320

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2. Individual counts for RSpredict(20) [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
CRW_00548	5S_rRNA links to Rfam database...	0.86	0.79	0.94	30	7349	3	0	2	1	8
CRW_00552	5S_rRNA links to Rfam database...	0.85	0.74	0.97	29	7110	5	0	1	4	10
CRW_00555	5S_rRNA links to Rfam database...	0.78	0.68	0.90	27	7596	4	0	3	1	13
CRW_00567	5S_rRNA links to Rfam database...	0.50	0.40	0.64	16	7478	11	0	9	2	24
CRW_00570	5S_rRNA links to Rfam database...	0.92	0.86	0.97	32	6870	3	0	1	2	5
CRW_00573	5S_rRNA links to Rfam database...	0.73	0.68	0.79	27	7106	7	0	7	0	13
CRW_01484	5S_rRNA links to Rfam database...	0.88	0.79	0.97	31	7471	2	0	1	1	8
CRW_01485	5S_rRNA links to Rfam database...	0.85	0.74	0.97	29	7473	1	0	1	0	10
CRW_01487	5S_rRNA links to Rfam database...	0.85	0.73	1.00	30	7473	0	0	0	0	11
CRW_01489	5S_rRNA links to Rfam database...	0.77	0.67	0.90	26	7474	4	0	3	1	13
CRW_01491	5S_rRNA links to Rfam database...	0.71	0.58	0.86	25	8356	4	0	4	0	18
CRW_01492	5S_rRNA links to Rfam database...	0.77	0.64	0.93	27	7597	2	0	2	0	15
CRW_01494	5S_rRNA links to Rfam database...	0.68	0.55	0.85	22	7114	4	0	4	0	18
CRW_01497	5S_rRNA links to Rfam database...	0.74	0.60	0.92	24	7114	3	0	2	1	16
CRW_01498	5S_rRNA links to Rfam database...	0.79	0.67	0.94	29	8097	2	0	2	0	14
CRW_01499	5S_rRNA links to Rfam database...	0.78	0.66	0.93	27	7972	2	0	2	0	14
CRW_01500	5S_rRNA links to Rfam database...	0.80	0.68	0.93	26	7722	3	0	2	1	12
CRW_01501	5S_rRNA links to Rfam database...	0.63	0.53	0.75	24	8483	8	0	8	0	21
CRW_01508	5S_rRNA links to Rfam database...	0.78	0.67	0.90	28	7970	4	0	3	1	14
CRW_01532	5S_rRNA links to Rfam database...	0.81	0.73	0.90	27	7110	7	0	3	4	10
CRW_01533	5S_rRNA links to Rfam database...	0.92	0.86	0.97	32	7107	3	0	1	2	5
CRW_01534	5S_rRNA links to Rfam database...	0.84	0.76	0.93	28	7110	6	0	2	4	9
CRW_01535	5S_rRNA links to Rfam database...	0.80	0.65	1.00	24	7116	2	0	0	2	13
CRW_01536	5S_rRNA links to Rfam database...	0.92	0.89	0.94	33	6986	4	0	2	2	4
CRW_01537	5S_rRNA links to Rfam database...	0.89	0.84	0.94	31	7107	6	0	2	4	6
CRW_01539	5S_rRNA links to Rfam database...	0.90	0.86	0.94	32	7106	6	0	2	4	5
CRW_01540	5S_rRNA links to Rfam database...	0.92	0.86	0.97	32	7107	4	0	1	3	5
CRW_01541	5S_rRNA links to Rfam database...	0.80	0.76	0.85	28	7107	7	0	5	2	9
CRW_01542	5S_rRNA links to Rfam database...	0.92	0.86	0.97	32	7107	4	0	1	3	5
CRW_01544	5S_rRNA links to Rfam database...	0.80	0.73	0.87	27	7109	5	0	4	1	10
CRW_01548	5S_rRNA links to Rfam database...	0.87	0.81	0.94	30	6989	4	0	2	2	7
CRW_01555	5S_rRNA links to Rfam database...	0.84	0.73	0.96	27	9017	1	0	1	0	10
CRW_01556	5S_rRNA links to Rfam database...	0.86	0.78	0.94	29	7109	5	0	2	3	8
CRW_01557	5S_rRNA links to Rfam database...	0.86	0.81	0.91	30	7107	6	0	3	3	7
CRW_01559	5S_rRNA links to Rfam database...	0.90	0.86	0.94	32	7226	5	0	2	3	5
CRW_01562	5S_rRNA links to Rfam database...	0.64	0.54	0.77	20	7114	8	0	6	2	17
CRW_01563	5S_rRNA links to Rfam database...	0.81	0.76	0.88	28	6871	6	0	4	2	9
CRW_01566	5S_rRNA links to Rfam database...	0.74	0.57	0.95	21	7118	4	0	1	3	16
CRW_01568	5S_rRNA links to Rfam database...	0.75	0.70	0.81	26	7108	6	0	6	0	11
CRW_01569	5S_rRNA links to Rfam database...	0.85	0.81	0.88	30	7106	5	0	4	1	7
CRW_01570	5S_rRNA links to Rfam database...	0.87	0.81	0.94	30	7108	5	0	2	3	7
CRW_01572	5S_rRNA links to Rfam database...	0.79	0.68	0.93	25	6994	6	0	2	4	12
CRW_01573	5S_rRNA links to Rfam database...	0.85	0.81	0.88	30	7226	6	0	4	2	7
CRW_01578	5S_rRNA links to Rfam database...	0.92	0.89	0.94	33	7105	5	0	2	3	4
CRW_01580	5S_rRNA links to Rfam database...	0.89	0.84	0.94	31	7107	3	0	2	1	6
CRW_01581	5S_rRNA links to Rfam database...	0.89	0.81	0.97	30	7109	2	0	1	1	7
CRW_01583	5S_rRNA links to Rfam database...	0.87	0.81	0.94	30	7108	6	0	2	4	7
CRW_01584	5S_rRNA links to Rfam database...	0.72	0.59	0.88	22	7115	5	0	3	2	15
CRW_01590	5S_rRNA links to Rfam database...	0.83	0.78	0.88	29	7107	7	0	4	3	8
CRW_01593	5S_rRNA links to Rfam database...	0.90	0.86	0.94	32	7106	5	0	2	3	5
CRW_01595	5S_rRNA links to Rfam database...	0.90	0.86	0.94	32	8481	6	0	2	4	5
CRW_01599	5S_rRNA links to Rfam database...	0.89	0.86	0.91	32	7105	7	0	3	4	5
CRW_01603	5S_rRNA links to Rfam database...	0.73	0.65	0.83	24	7111	8	0	5	3	13
CRW_01605	5S_rRNA links to Rfam database...	0.72	0.65	0.80	24	7110	10	0	6	4	13
CRW_01606	5S_rRNA links to Rfam database...	0.35	0.24	0.50	9	7122	10	0	9	1	28
CRW_01608	5S_rRNA links to Rfam database...	0.89	0.84	0.94	31	8352	4	0	2	2	6
CRW_01616	5S_rRNA links to Rfam database...	0.78	0.68	0.89	25	7112	5	0	3	2	12
CRW_01617	5S_rRNA links to Rfam database...	0.86	0.81	0.91	30	7107	4	0	3	1	7
CRW_01620	5S_rRNA links to Rfam database...	0.92	0.92	0.92	34	6984	7	0	3	4	3
CRW_01621	5S_rRNA links to Rfam database...	0.70	0.62	0.79	23	7111	7	0	6	1	14
CRW_01623	5S_rRNA links to Rfam database...	0.90	0.86	0.94	32	7106	4	0	2	2	5
CRW_01625	5S_rRNA links to Rfam database...	0.59	0.51	0.68	19	7112	11	0	9	2	18
PDB_00012	mir-TAR links to Rfam database...	1.00	1.00	1.00	7	399	2	0	0	2	0
PDB_00070	tRNA links to Rfam database...	0.09	0.04	0.20	1	2845	4	0	4	0	23
PDB_00213	Gammaretro_CES links to Rfam database...	0.56	0.49	0.65	20	5019	11	0	11	0	21
PDB_00229	tRNA links to Rfam database...	0.34	0.22	0.56	5	2766	4	0	4	0	18
PDB_00327	tRNA links to Rfam database...	0.96	0.91	1.00	21	3060	0	0	0	0	2
PDB_00362	tRNA links to Rfam database...	0.62	0.50	0.79	11	2836	3	0	3	0	11
PDB_00402	tRNA links to Rfam database...	0.96	0.91	1.00	21	2754	0	0	0	0	2
PDB_00431	tRNA links to Rfam database...	0.97	0.95	1.00	19	2192	0	0	0	0	1
PDB_00474	tRNA links to Rfam database...	0.72	0.52	1.00	12	2689	0	0	0	0	11
PDB_00553	mir-TAR links to Rfam database...	0.90	0.82	1.00	9	456	0	0	0	0	2
PDB_00571	tRNA links to Rfam database...	0.66	0.56	0.78	14	3303	5	0	4	1	11
PDB_00667	tRNA links to Rfam database...	0.91	0.86	0.95	19	2830	2	0	1	1	3
PDB_00741	Entero_5_CRE links to Rfam database...	0.84	0.71	1.00	12	691	0	0	0	0	5
PDB_00810	s2m links to Rfam database...	0.64	0.47	0.89	8	1072	1	0	1	0	9
PDB_00828	Purine links to Rfam database...	0.82	0.74	0.91	20	2463	2	2	0	0	7
PDB_00829	Purine links to Rfam database...	0.70	0.63	0.79	15	2259	4	2	2	0	9
PDB_00876	HIV_FE links to Rfam database...	0.55	0.50	0.63	10	974	6	0	6	0	10
PDB_01002	tRNA links to Rfam database...	0.90	0.86	0.95	18	2756	3	0	1	2	3
PDB_01020	Purine links to Rfam database...	0.84	0.78	0.90	18	2258	3	2	0	1	5
PDB_01050	UnaL2 links to Rfam database...	0.68	0.54	0.88	7	622	3	0	1	2	6
PDB_01053	tRNA links to Rfam database...	1.00	1.00	1.00	16	1362	0	0	0	0	0
PDB_01073	SAM links to Rfam database...	0.34	0.18	0.67	6	4362	3	0	3	0	28
PDB_01114	TPP links to Rfam database...	0.77	0.59	1.00	16	2834	0	0	0	0	11
PDB_01152	HIV_FS2 links to Rfam database...	0.88	0.79	1.00	11	550	0	0	0	0	3
PDB_01236	ykoK links to Rfam database...	0.76	0.61	0.94	33	11593	5	1	1	3	21
RFA_00389	Hammerhead_3 links to Rfam database...	0.90	0.87	0.93	13	1417	4	0	1	3	2
RFA_00390	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	3	0	0	3	0
RFA_00391	Hammerhead_3 links to Rfam database...	0.83	0.80	0.86	12	1417	5	0	2	3	3
RFA_00396	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	3	0	0	3	1
RFA_00402	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	1	0	0	1	0
RFA_00409	Hammerhead_3 links to Rfam database...	0.83	0.80	0.86	12	1417	5	0	2	3	3
RFA_00416	Hammerhead_3 links to Rfam database...	0.87	0.87	0.87	13	1470	5	0	2	3	2
RFA_00433	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	3	0	0	3	0
RFA_00434	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	3	0	0	3	0
RFA_00436	Hammerhead_3 links to Rfam database...	0.87	0.87	0.87	13	1416	5	0	2	3	2
RFA_00440	Hammerhead_3 links to Rfam database...	0.82	0.67	1.00	10	1475	3	0	0	3	5
RFA_00442	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	3	0	0	3	0
RFA_00444	Hammerhead_3 links to Rfam database...	0.78	0.67	0.91	10	1529	2	0	1	1	5
RFA_00583	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4935	6	0	0	6	0
RFA_00584	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	2911	5	0	0	5	0
RFA_00585	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4836	3	0	0	3	0
RFA_00586	Y_RNA links to Rfam database...	0.97	0.93	1.00	14	3902	3	0	0	3	1
RFA_00587	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4836	7	0	0	7	0
RFA_00588	Y_RNA links to Rfam database...	0.97	0.93	1.00	14	4546	8	0	0	8	1
RFA_00589	Y_RNA links to Rfam database...	0.97	0.93	1.00	14	4357	2	0	0	2	1
RFA_00594	Y_RNA links to Rfam database...	0.97	0.93	1.00	14	2761	9	0	0	9	1
RFA_00596	Y_RNA links to Rfam database...	0.39	0.33	0.45	5	5984	13	0	6	7	10
RFA_00658	Hammerhead_1 links to Rfam database...	0.69	0.64	0.75	9	1116	4	0	3	1	5
RFA_00664	Hammerhead_1 links to Rfam database...	0.64	0.57	0.73	8	979	4	0	3	1	6
RFA_00667	Hammerhead_1 links to Rfam database...	0.64	0.57	0.73	8	979	4	0	3	1	6
RFA_00668	Hammerhead_1 links to Rfam database...	0.47	0.36	0.63	5	982	4	0	3	1	9
RFA_00672	Hammerhead_1 links to Rfam database...	0.61	0.54	0.70	7	893	3	0	3	0	6
RFA_00673	Hammerhead_1 links to Rfam database...	0.59	0.50	0.70	7	1118	4	0	3	1	7
RFA_00674	Hammerhead_1 links to Rfam database...	0.69	0.64	0.75	9	1116	4	0	3	1	5
RFA_00675	Hammerhead_1 links to Rfam database...	0.62	0.50	0.78	7	981	3	0	2	1	7
RFA_00677	Hammerhead_1 links to Rfam database...	0.69	0.64	0.75	9	978	4	0	3	1	5
RFA_00678	Hammerhead_1 links to Rfam database...	0.72	0.64	0.82	9	935	3	0	2	1	5
RFA_00680	Hammerhead_1 links to Rfam database...	0.74	0.71	0.77	10	1115	4	0	3	1	4
RFA_00704	Hammerhead_1 links to Rfam database...	0.42	0.36	0.50	5	980	6	0	5	1	9
RFA_00707	Hammerhead_1 links to Rfam database...	0.72	0.64	0.82	9	1024	3	0	2	1	5
RFA_00715	Hammerhead_1 links to Rfam database...	0.60	0.43	0.86	6	939	2	0	1	1	8
RFA_00717	Hammerhead_1 links to Rfam database...	0.48	0.43	0.55	6	892	5	0	5	0	8
RFA_00730	s2m links to Rfam database...	0.91	0.83	1.00	10	893	1	0	0	1	2
RFA_00731	s2m links to Rfam database...	0.91	0.83	1.00	10	893	0	0	0	0	2
RFA_00733	s2m links to Rfam database...	0.91	0.83	1.00	10	893	0	0	0	0	2
RFA_00734	s2m links to Rfam database...	0.91	0.83	1.00	10	893	0	0	0	0	2
RFA_00736	s2m links to Rfam database...	0.91	0.83	1.00	10	893	0	0	0	0	2
RFA_00737	s2m links to Rfam database...	0.91	0.83	1.00	10	893	0	0	0	0	2
RFA_00745	s2m links to Rfam database...	0.91	0.83	1.00	10	936	1	0	0	1	2
RFA_00749	s2m links to Rfam database...	0.91	0.83	1.00	10	893	0	0	0	0	2
RFA_00758	s2m links to Rfam database...	0.86	0.75	1.00	9	894	0	0	0	0	3
RFA_00762	s2m links to Rfam database...	0.91	0.83	1.00	10	893	0	0	0	0	2
RFA_00763	s2m links to Rfam database...	0.91	0.83	1.00	10	893	1	0	0	1	2
RFA_00764	s2m links to Rfam database...	0.91	0.83	1.00	10	893	0	0	0	0	2
RFA_00765	s2m links to Rfam database...	0.91	0.83	1.00	10	893	0	0	0	0	2
RFA_00786	Gammaretro_CES links to Rfam database...	0.81	0.78	0.83	25	5020	5	1	4	0	7
RFA_00791	Gammaretro_CES links to Rfam database...	0.77	0.72	0.82	23	5123	6	1	4	1	9
RFA_00792	Gammaretro_CES links to Rfam database...	0.64	0.63	0.67	20	5020	11	2	8	1	12
RFA_00801	Gammaretro_CES links to Rfam database...	0.59	0.56	0.62	18	5021	12	2	9	1	14
SPR_00007	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00009	tRNA links to Rfam database...	0.77	0.75	0.79	15	2831	4	0	4	0	5
SPR_00010	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00012	tRNA links to Rfam database...	0.95	0.95	0.95	19	2830	1	0	1	0	1
SPR_00013	tRNA links to Rfam database...	0.84	0.80	0.89	16	2832	2	0	2	0	4
SPR_00016	tRNA links to Rfam database...	0.95	0.95	0.95	20	2829	1	0	1	0	1
SPR_00017	tRNA links to Rfam database...	0.90	0.90	0.90	19	2829	2	0	2	0	2
SPR_00025	tRNA links to Rfam database...	0.90	0.90	0.90	18	2906	3	0	2	1	2
SPR_00026	tRNA links to Rfam database...	0.95	0.95	0.95	20	2905	1	0	1	0	1
SPR_00027	tRNA links to Rfam database...	0.90	0.90	0.90	19	2905	2	0	2	0	2
SPR_00036	tRNA links to Rfam database...	0.95	0.90	1.00	18	2757	0	0	0	0	2
SPR_00045	tRNA links to Rfam database...	0.93	0.91	0.95	20	2829	1	0	1	0	2
SPR_00064	tRNA links to Rfam database...	0.63	0.48	0.83	10	2838	2	0	2	0	11
SPR_00065	tRNA links to Rfam database...	0.90	0.90	0.90	19	2829	2	0	2	0	2
SPR_00066	tRNA links to Rfam database...	0.63	0.48	0.83	10	2838	2	0	2	0	11
SPR_00068	tRNA links to Rfam database...	0.69	0.52	0.92	11	2838	1	0	1	0	10
SPR_00070	tRNA links to Rfam database...	0.88	0.86	0.90	18	2830	2	0	2	0	3
SPR_00074	tRNA links to Rfam database...	0.92	0.90	0.95	18	2831	1	0	1	0	2
SPR_00079	tRNA links to Rfam database...	0.95	0.95	0.95	18	2466	1	0	1	0	1
SPR_00086	tRNA links to Rfam database...	0.95	0.95	0.95	20	2829	1	0	1	0	1
SPR_00087	tRNA links to Rfam database...	0.95	0.95	0.95	19	2830	1	0	1	0	1
SPR_00088	tRNA links to Rfam database...	0.67	0.50	0.91	10	2839	1	0	1	0	10
SPR_00089	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	0	0	0	0	0
SPR_00090	tRNA links to Rfam database...	0.87	0.80	0.94	16	2833	1	0	1	0	4
SPR_00091	tRNA links to Rfam database...	0.67	0.50	0.91	10	2839	1	0	1	0	10
SPR_00095	tRNA links to Rfam database...	0.95	0.95	0.95	20	2829	1	0	1	0	1
SPR_00111	tRNA links to Rfam database...	0.72	0.52	1.00	11	2690	0	0	0	0	10
SPR_00112	tRNA links to Rfam database...	0.75	0.57	1.00	12	2689	0	0	0	0	9
SPR_00115	tRNA links to Rfam database...	1.00	1.00	1.00	21	2680	0	0	0	0	0
SPR_00117	tRNA links to Rfam database...	0.93	0.90	0.95	19	2830	2	0	1	1	2
SPR_00139	tRNA links to Rfam database...	0.31	0.24	0.42	5	2914	8	0	7	1	16
SPR_00153	tRNA links to Rfam database...	0.93	0.90	0.95	19	2906	1	0	1	0	2
SPR_00155	tRNA links to Rfam database...	0.90	0.90	0.90	19	2905	2	0	2	0	2
SPR_00156	tRNA links to Rfam database...	0.95	0.95	0.95	20	2905	1	0	1	0	1
SPR_00176	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	0	0	0	0	0
SPR_00177	tRNA links to Rfam database...	0.95	0.95	0.95	20	2829	1	0	1	0	1
SPR_00178	tRNA links to Rfam database...	0.93	0.90	0.95	19	2830	1	0	1	0	2
SPR_00191	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00200	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00224	tRNA links to Rfam database...	0.90	0.90	0.90	18	3721	3	0	2	1	2
SPR_00271	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00273	tRNA links to Rfam database...	0.90	0.90	0.90	19	2829	2	0	2	0	2
SPR_00276	tRNA links to Rfam database...	0.95	0.95	0.95	20	2905	1	0	1	0	1
SPR_00277	tRNA links to Rfam database...	0.95	0.95	0.95	20	2905	1	0	1	0	1
SPR_00294	tRNA links to Rfam database...	0.29	0.19	0.44	4	2841	5	0	5	0	17
SPR_00295	tRNA links to Rfam database...	0.55	0.38	0.80	8	2765	2	0	2	0	13
SPR_00314	tRNA links to Rfam database...	0.98	0.95	1.00	20	2906	0	0	0	0	1
SPR_00315	tRNA links to Rfam database...	0.98	0.95	1.00	20	2906	0	0	0	0	1
SPR_00317	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00318	tRNA links to Rfam database...	0.93	0.90	0.95	19	2906	1	0	1	0	2
SPR_00321	tRNA links to Rfam database...	0.66	0.48	0.91	10	2992	1	0	1	0	11
SPR_00333	tRNA links to Rfam database...	0.90	0.86	0.95	18	2756	1	0	1	0	3
SPR_00352	tRNA links to Rfam database...	0.85	0.81	0.89	17	2907	2	0	2	0	4
SPR_00353	tRNA links to Rfam database...	0.95	0.95	0.95	20	2829	1	0	1	0	1
SPR_00357	tRNA links to Rfam database...	0.93	0.90	0.95	19	2906	1	0	1	0	2
SPR_00358	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00370	tRNA links to Rfam database...	0.69	0.52	0.92	11	2763	1	0	1	0	10
SPR_00386	tRNA links to Rfam database...	0.95	0.95	0.95	19	4166	3	0	1	2	1
SPR_00414	tRNA links to Rfam database...	1.00	1.00	1.00	21	3549	4	0	0	4	0
SPR_00415	tRNA links to Rfam database...	0.95	0.95	0.95	20	3549	5	0	1	4	1
SPR_00417	tRNA links to Rfam database...	0.83	0.73	0.94	16	3553	5	0	1	4	6
SPR_00418	tRNA links to Rfam database...	0.80	0.68	0.94	15	3554	5	0	1	4	7
SPR_00434	tRNA links to Rfam database...	0.95	0.95	0.95	20	2829	1	0	1	0	1
SPR_00435	tRNA links to Rfam database...	0.69	0.52	0.92	11	2838	1	0	1	0	10
SPR_00436	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00437	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	0	0	0	0	0
SPR_00438	tRNA links to Rfam database...	0.95	0.95	0.95	20	2754	1	0	1	0	1
SPR_00452	tRNA links to Rfam database...	0.69	0.52	0.92	11	2838	1	0	1	0	10
SPR_00455	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00456	tRNA links to Rfam database...	0.88	0.86	0.90	18	2830	2	0	2	0	3
SPR_00476	tRNA links to Rfam database...	0.95	0.95	0.95	20	2754	1	0	1	0	1
SPR_00479	tRNA links to Rfam database...	0.93	0.90	0.95	19	2830	1	0	1	0	2
SPR_00482	tRNA links to Rfam database...	1.00	1.00	1.00	21	2680	0	0	0	0	0
SPR_00483	tRNA links to Rfam database...	0.72	0.67	0.78	14	2832	4	0	4	0	7
SPR_00487	tRNA links to Rfam database...	0.78	0.73	0.84	16	2682	3	0	3	0	6
SPR_00493	tRNA links to Rfam database...	0.60	0.41	0.90	9	2765	1	0	1	0	13
SPR_00496	tRNA links to Rfam database...	0.00	0.00	0.00	0	2771	4	0	4	0	21
SPR_00497	tRNA links to Rfam database...	0.95	0.95	0.95	20	2754	1	0	1	0	1
SPR_00502	tRNA links to Rfam database...	0.90	0.86	0.95	18	2907	1	0	1	0	3
SPR_00504	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	0	0	0	0	0
SPR_00505	tRNA links to Rfam database...	0.74	0.55	1.00	11	2915	0	0	0	0	9
SPR_00506	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00509	tRNA links to Rfam database...	0.64	0.50	0.83	10	2914	2	0	2	0	10
SPR_00512	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00513	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00518	tRNA links to Rfam database...	0.74	0.55	1.00	11	2915	0	0	0	0	9
SPR_00548	tRNA links to Rfam database...	0.90	0.86	0.95	18	3384	4	0	1	3	3
SPR_00557	tRNA links to Rfam database...	0.98	0.95	1.00	20	2830	0	0	0	0	1
SPR_00561	tRNA links to Rfam database...	0.72	0.52	1.00	11	2839	0	0	0	0	10
SPR_00590	tRNA links to Rfam database...	0.92	0.90	0.95	18	2984	2	0	1	1	2
SPR_00593	tRNA links to Rfam database...	0.95	0.95	0.95	18	2756	2	0	1	1	1
SPR_00595	tRNA links to Rfam database...	0.95	0.95	0.95	20	2754	1	0	1	0	1
SPR_00598	tRNA links to Rfam database...	0.66	0.52	0.85	11	2990	2	0	2	0	10
SPR_00610	tRNA links to Rfam database...	1.00	1.00	1.00	21	2535	0	0	0	0	0
SPR_00620	tRNA links to Rfam database...	0.93	0.90	0.95	19	2983	1	0	1	0	2
SPR_00721	tRNA links to Rfam database...	0.95	0.95	0.95	20	2905	1	0	1	0	1
SPR_00722	tRNA links to Rfam database...	0.95	0.95	0.95	19	2906	1	0	1	0	1
SPR_00758	tRNA links to Rfam database...	0.95	0.95	0.95	20	2982	1	0	1	0	1
SPR_00760	tRNA links to Rfam database...	0.64	0.52	0.79	11	3556	3	0	3	0	10
SPR_00777	tRNA links to Rfam database...	1.00	1.00	1.00	20	2608	1	0	0	1	0
SPR_00867	tRNA links to Rfam database...	0.88	0.86	0.90	18	2906	2	0	2	0	3
SPR_00868	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00943	tRNA links to Rfam database...	1.00	1.00	1.00	20	2536	0	0	0	0	0
SPR_00957	tRNA links to Rfam database...	0.95	0.95	0.95	20	2982	2	0	1	1	1
SPR_01040	tRNA links to Rfam database...	0.69	0.52	0.92	11	2763	1	0	1	0	10
SPR_01088	tRNA links to Rfam database...	0.82	0.71	0.94	15	2910	1	0	1	0	6
SPR_01095	tRNA links to Rfam database...	0.72	0.52	1.00	11	2839	0	0	0	0	10
SPR_01106	tRNA links to Rfam database...	1.00	1.00	1.00	21	2535	0	0	0	0	0
SPR_01117	tRNA links to Rfam database...	0.49	0.29	0.86	6	2996	1	0	1	0	15
SPR_01157	tRNA links to Rfam database...	0.79	0.71	0.88	15	2758	3	0	2	1	6
SRP_00008	Bacteria_small_SRP links to Rfam database...	0.50	0.40	0.63	10	2910	7	0	6	1	15
SRP_00020	Bacteria_small_SRP links to Rfam database...	0.90	0.85	0.97	28	5536	1	0	1	0	5
SRP_00038	Bacteria_small_SRP links to Rfam database...	0.86	0.82	0.90	27	5020	3	0	3	0	6
SRP_00042	Bacteria_small_SRP links to Rfam database...	0.73	0.60	0.88	15	3988	3	0	2	1	10
SRP_00044	Bacteria_small_SRP links to Rfam database...	0.89	0.84	0.93	27	6076	4	0	2	2	5
SRP_00046	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	4749	4	1	3	0	32
SRP_00051	Bacteria_small_SRP links to Rfam database...	0.82	0.67	1.00	20	5440	0	0	0	0	10
SRP_00054	Bacteria_small_SRP links to Rfam database...	0.82	0.75	0.89	24	5538	3	0	3	0	8
SRP_00057	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6327	1	1	0	0	35
SRP_00058	Bacteria_small_SRP links to Rfam database...	0.91	0.85	0.97	29	5748	1	0	1	0	5
SRP_00072	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6325	3	0	3	0	29
SRP_00074	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6553	2	2	0	0	29
SRP_00075	Bacteria_small_SRP links to Rfam database...	0.44	0.35	0.55	12	5543	10	1	9	0	22
SRP_00077	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6663	7	1	6	0	37
SRP_00081	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	5562	3	2	1	0	31
SRP_00084	Bacteria_small_SRP links to Rfam database...	0.84	0.74	0.96	25	5434	1	0	1	0	9
SRP_00094	Bacteria_small_SRP links to Rfam database...	0.56	0.46	0.69	11	4079	6	1	4	1	13
SRP_00095	Bacteria_small_SRP links to Rfam database...	0.89	0.84	0.95	21	3983	2	0	1	1	4
SRP_00098	Bacteria_small_SRP links to Rfam database...	0.51	0.43	0.62	16	6415	11	0	10	1	21
SRP_00105	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	5561	4	0	4	0	34
SRP_00107	Bacteria_small_SRP links to Rfam database...	0.55	0.53	0.59	10	3638	8	2	5	1	9
SRP_00121	Bacteria_small_SRP links to Rfam database...	0.73	0.60	0.88	15	4261	2	0	2	0	10
SRP_00128	Bacteria_small_SRP links to Rfam database...	0.87	0.75	1.00	27	6759	0	0	0	0	9
SRP_00132	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	4848	3	0	3	0	29
SRP_00134	Bacteria_large_SRP links to Rfam database...	0.71	0.69	0.74	20	5968	8	0	7	1	9
SRP_00141	Bacteria_small_SRP links to Rfam database...	0.72	0.56	0.92	23	6303	2	0	2	0	18
SRP_00161	Bacteria_small_SRP links to Rfam database...	0.91	0.86	0.95	19	2830	1	0	1	0	3
SRP_00162	Bacteria_small_SRP links to Rfam database...	0.44	0.30	0.64	7	2915	4	1	3	0	16
SRP_00163	Bacteria_small_SRP links to Rfam database...	0.74	0.65	0.85	17	3466	3	1	2	0	9
SRP_00164	Bacteria_small_SRP links to Rfam database...	0.83	0.69	1.00	24	6879	0	0	0	0	11
SRP_00170	Bacteria_small_SRP links to Rfam database...	0.85	0.76	0.95	19	4075	2	0	1	1	6
SRP_00194	Bacteria_small_SRP links to Rfam database...	0.58	0.48	0.71	10	3226	4	0	4	0	11
SRP_00200	Bacteria_small_SRP links to Rfam database...	0.82	0.69	0.96	25	6877	2	0	1	1	11
SRP_00209	Bacteria_small_SRP links to Rfam database...	0.85	0.85	0.85	23	4629	5	0	4	1	4
SRP_00213	Bacteria_small_SRP links to Rfam database...	0.87	0.80	0.95	20	4165	2	0	1	1	5
SRP_00215	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	3237	3	0	3	0	25
SRP_00227	Bacteria_small_SRP links to Rfam database...	0.95	0.90	1.00	28	5123	0	0	0	0	3
SRP_00231	Bacteria_small_SRP links to Rfam database...	0.95	0.91	1.00	31	5429	0	0	0	0	3
SRP_00233	Bacteria_small_SRP links to Rfam database...	0.74	0.61	0.91	20	5129	2	0	2	0	13
SRP_00243	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	5147	4	3	1	0	31
SRP_00244	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6899	4	2	2	0	39
SRP_00250	Bacteria_small_SRP links to Rfam database...	0.83	0.72	0.96	26	6759	1	0	1	0	10
SRP_00251	Bacteria_small_SRP links to Rfam database...	0.82	0.69	0.96	25	6995	1	0	1	0	11
SRP_00266	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	4651	5	2	3	0	29
SRP_00268	Bacteria_small_SRP links to Rfam database...	0.84	0.74	0.95	20	4165	2	0	1	1	7
SRP_00269	Bacteria_small_SRP links to Rfam database...	0.78	0.67	0.92	22	5026	2	0	2	0	11
SRP_00270	Bacteria_small_SRP links to Rfam database...	0.82	0.68	1.00	21	4635	0	0	0	0	10
SRP_00271	Bacteria_small_SRP links to Rfam database...	0.93	0.88	1.00	21	3219	0	0	0	0	3
SRP_00273	Bacteria_small_SRP links to Rfam database...	0.79	0.65	0.96	26	6759	1	0	1	0	14
SRP_00274	Bacteria_small_SRP links to Rfam database...	0.84	0.71	1.00	27	6876	0	0	0	0	11
SRP_00295	Bacteria_small_SRP links to Rfam database...	0.83	0.68	1.00	26	6877	0	0	0	0	12
SRP_00303	Bacteria_small_SRP links to Rfam database...	0.68	0.59	0.79	19	6646	6	0	5	1	13
SRP_00310	Bacteria_small_SRP links to Rfam database...	0.82	0.78	0.86	18	2905	3	0	3	0	5
SRP_00312	Bacteria_small_SRP links to Rfam database...	0.79	0.67	0.95	18	4167	2	0	1	1	9
SRP_00315	Bacteria_small_SRP links to Rfam database...	0.84	0.83	0.86	19	2904	3	0	3	0	4
SRP_00318	Bacteria_small_SRP links to Rfam database...	0.87	0.87	0.87	20	2980	3	0	3	0	3
SRP_00325	Bacteria_small_SRP links to Rfam database...	0.94	0.88	1.00	29	4342	0	0	0	0	4
SRP_00326	Bacteria_small_SRP links to Rfam database...	0.73	0.65	0.83	20	5026	4	0	4	0	11
SRP_00333	Bacteria_small_SRP links to Rfam database...	0.92	0.85	1.00	29	5122	0	0	0	0	5
SRP_00338	Bacteria_small_SRP links to Rfam database...	0.56	0.36	0.87	13	5445	2	0	2	0	23
SRP_00341	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	4751	2	1	1	0	31
SRP_00342	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	4001	4	0	4	0	25
SRP_00350	Bacteria_small_SRP links to Rfam database...	0.84	0.74	0.95	20	3895	2	0	1	1	7
SRP_00356	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	5048	2	0	2	0	30
SRP_00357	Bacteria_small_SRP links to Rfam database...	0.87	0.75	1.00	27	5329	0	0	0	0	9
SRP_00358	Bacteria_small_SRP links to Rfam database...	0.74	0.57	0.95	20	6307	1	0	1	0	15
SRP_00367	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6780	6	3	3	0	35
SRP_00369	Bacteria_small_SRP links to Rfam database...	0.48	0.37	0.62	13	5757	9	1	7	1	22
SRP_00383	Bacteria_small_SRP links to Rfam database...	0.82	0.67	1.00	16	3224	0	0	0	0	8

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Performance of McQFold - scored lower in this pairwise comparison

1. Total counts & total scores for McQFold

Total Base Pair Counts
Total TP	4783
Total TN	1289544
Total FP	3019
Total FP CONTRA	429
Total FP INCONS	2268
Total FP COMP	322
Total FN	3361

Total Scores
MCC	0.610
Average MCC ± 95% Confidence Intervals	0.645 ± 0.033
Sensitivity	0.587
Positive Predictive Value	0.639
Nr of predictions	320

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2. Individual counts for McQFold [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
CRW_00548	5S_rRNA links to Rfam database...	0.39	0.37	0.42	14	7348	19	2	17	0	24
CRW_00552	5S_rRNA links to Rfam database...	0.38	0.36	0.41	14	7106	22	2	18	2	25
CRW_00555	5S_rRNA links to Rfam database...	0.28	0.25	0.31	10	7594	22	2	20	0	30
CRW_00567	5S_rRNA links to Rfam database...	0.49	0.45	0.53	18	7469	18	4	12	2	22
CRW_00570	5S_rRNA links to Rfam database...	0.83	0.81	0.86	30	6868	6	0	5	1	7
CRW_00573	5S_rRNA links to Rfam database...	0.26	0.25	0.27	10	7103	28	1	26	1	30
CRW_01484	5S_rRNA links to Rfam database...	0.42	0.41	0.44	16	7467	20	2	18	0	23
CRW_01485	5S_rRNA links to Rfam database...	0.43	0.38	0.48	15	7472	16	2	14	0	24
CRW_01487	5S_rRNA links to Rfam database...	0.56	0.51	0.62	21	7469	13	2	11	0	20
CRW_01489	5S_rRNA links to Rfam database...	0.42	0.41	0.44	16	7467	20	3	17	0	23
CRW_01491	5S_rRNA links to Rfam database...	0.00	0.00	0.00	0	8352	33	1	32	0	43
CRW_01492	5S_rRNA links to Rfam database...	0.77	0.74	0.82	31	7588	10	0	7	3	11
CRW_01494	5S_rRNA links to Rfam database...	0.73	0.65	0.81	26	7108	8	0	6	2	14
CRW_01497	5S_rRNA links to Rfam database...	0.33	0.28	0.41	11	7113	18	0	16	2	29
CRW_01498	5S_rRNA links to Rfam database...	0.86	0.77	0.97	33	8094	2	0	1	1	10
CRW_01499	5S_rRNA links to Rfam database...	0.27	0.24	0.30	10	7968	24	1	22	1	31
CRW_01500	5S_rRNA links to Rfam database...	0.83	0.79	0.88	30	7716	5	2	2	1	8
CRW_01501	5S_rRNA links to Rfam database...	0.80	0.76	0.85	34	8475	6	0	6	0	11
CRW_01508	5S_rRNA links to Rfam database...	0.49	0.45	0.53	19	7965	19	3	14	2	23
CRW_01532	5S_rRNA links to Rfam database...	0.46	0.41	0.54	15	7112	16	1	12	3	22
CRW_01533	5S_rRNA links to Rfam database...	0.57	0.51	0.63	19	7110	15	2	9	4	18
CRW_01534	5S_rRNA links to Rfam database...	0.25	0.24	0.26	9	7106	25	7	18	0	28
CRW_01535	5S_rRNA links to Rfam database...	0.38	0.38	0.38	14	7103	24	3	20	1	23
CRW_01536	5S_rRNA links to Rfam database...	0.74	0.68	0.81	25	6990	7	0	6	1	12
CRW_01537	5S_rRNA links to Rfam database...	0.17	0.14	0.23	5	7118	17	2	15	0	32
CRW_01539	5S_rRNA links to Rfam database...	0.55	0.49	0.62	18	7111	11	3	8	0	19
CRW_01540	5S_rRNA links to Rfam database...	0.69	0.65	0.73	24	7107	11	0	9	2	13
CRW_01541	5S_rRNA links to Rfam database...	0.26	0.24	0.28	9	7108	23	6	17	0	28
CRW_01542	5S_rRNA links to Rfam database...	0.72	0.65	0.80	24	7110	11	0	6	5	13
CRW_01544	5S_rRNA links to Rfam database...	0.73	0.70	0.76	26	7106	9	2	6	1	11
CRW_01548	5S_rRNA links to Rfam database...	0.42	0.41	0.44	15	6987	20	3	16	1	22
CRW_01555	5S_rRNA links to Rfam database...	0.73	0.65	0.83	24	9016	10	3	2	5	13
CRW_01556	5S_rRNA links to Rfam database...	0.77	0.70	0.84	26	7109	6	0	5	1	11
CRW_01557	5S_rRNA links to Rfam database...	0.41	0.41	0.42	15	7104	21	3	18	0	22
CRW_01559	5S_rRNA links to Rfam database...	0.81	0.73	0.90	27	7230	7	0	3	4	10
CRW_01562	5S_rRNA links to Rfam database...	0.22	0.22	0.23	8	7105	28	1	26	1	29
CRW_01563	5S_rRNA links to Rfam database...	0.52	0.51	0.53	19	6867	17	2	15	0	18
CRW_01566	5S_rRNA links to Rfam database...	0.43	0.41	0.47	15	7108	18	2	15	1	22
CRW_01568	5S_rRNA links to Rfam database...	0.26	0.24	0.29	9	7109	22	3	19	0	28
CRW_01569	5S_rRNA links to Rfam database...	0.25	0.24	0.27	9	7107	25	2	22	1	28
CRW_01570	5S_rRNA links to Rfam database...	0.66	0.59	0.73	22	7110	14	2	6	6	15
CRW_01572	5S_rRNA links to Rfam database...	0.39	0.35	0.45	13	6992	18	2	14	2	24
CRW_01573	5S_rRNA links to Rfam database...	0.21	0.22	0.22	8	7223	29	3	26	0	29
CRW_01578	5S_rRNA links to Rfam database...	0.40	0.41	0.39	15	7102	23	3	20	0	22
CRW_01580	5S_rRNA links to Rfam database...	0.28	0.24	0.32	9	7112	19	3	16	0	28
CRW_01581	5S_rRNA links to Rfam database...	0.18	0.16	0.21	6	7111	23	1	22	0	31
CRW_01583	5S_rRNA links to Rfam database...	0.39	0.35	0.43	13	7110	17	3	14	0	24
CRW_01584	5S_rRNA links to Rfam database...	0.35	0.35	0.36	13	7104	23	4	19	0	24
CRW_01590	5S_rRNA links to Rfam database...	0.24	0.24	0.25	9	7104	28	3	24	1	28
CRW_01593	5S_rRNA links to Rfam database...	0.25	0.24	0.27	9	7107	24	5	19	0	28
CRW_01595	5S_rRNA links to Rfam database...	0.00	0.00	0.00	0	8486	30	3	26	1	37
CRW_01599	5S_rRNA links to Rfam database...	0.44	0.43	0.46	16	7105	19	1	18	0	21
CRW_01603	5S_rRNA links to Rfam database...	0.22	0.22	0.24	8	7106	26	6	20	0	29
CRW_01605	5S_rRNA links to Rfam database...	0.64	0.54	0.77	20	7114	11	0	6	5	17
CRW_01606	5S_rRNA links to Rfam database...	0.25	0.24	0.26	9	7105	26	4	22	0	28
CRW_01608	5S_rRNA links to Rfam database...	0.55	0.54	0.57	20	8350	16	3	12	1	17
CRW_01616	5S_rRNA links to Rfam database...	0.39	0.38	0.40	14	7105	22	3	18	1	23
CRW_01617	5S_rRNA links to Rfam database...	0.25	0.22	0.30	8	7113	19	3	16	0	29
CRW_01620	5S_rRNA links to Rfam database...	0.25	0.24	0.26	9	6986	27	7	19	1	28
CRW_01621	5S_rRNA links to Rfam database...	0.68	0.59	0.79	22	7112	7	0	6	1	15
CRW_01623	5S_rRNA links to Rfam database...	0.20	0.19	0.21	7	7107	26	2	24	0	30
CRW_01625	5S_rRNA links to Rfam database...	0.31	0.32	0.30	12	7100	29	4	24	1	25
PDB_00012	mir-TAR links to Rfam database...	1.00	1.00	1.00	7	399	3	0	0	3	0
PDB_00070	tRNA links to Rfam database...	0.66	0.67	0.67	16	2826	8	1	7	0	8
PDB_00213	Gammaretro_CES links to Rfam database...	0.72	0.68	0.76	28	5013	9	0	9	0	13
PDB_00229	tRNA links to Rfam database...	0.96	0.91	1.00	21	2754	0	0	0	0	2
PDB_00327	tRNA links to Rfam database...	0.86	0.74	1.00	17	3064	0	0	0	0	6
PDB_00362	tRNA links to Rfam database...	0.98	0.95	1.00	21	2829	0	0	0	0	1
PDB_00402	tRNA links to Rfam database...	0.96	0.91	1.00	21	2754	0	0	0	0	2
PDB_00431	tRNA links to Rfam database...	0.88	0.95	0.83	19	2188	5	4	0	1	1
PDB_00474	tRNA links to Rfam database...	0.40	0.39	0.41	9	2679	15	1	12	2	14
PDB_00553	mir-TAR links to Rfam database...	1.00	1.00	1.00	11	454	0	0	0	0	0
PDB_00571	tRNA links to Rfam database...	0.87	0.80	0.95	20	3300	1	1	0	0	5
PDB_00667	tRNA links to Rfam database...	0.71	0.68	0.75	15	2830	7	4	1	2	7
PDB_00741	Entero_5_CRE links to Rfam database...	0.91	0.82	1.00	14	689	0	0	0	0	3
PDB_00810	s2m links to Rfam database...	0.51	0.41	0.64	7	1070	4	2	2	0	10
PDB_00828	Purine links to Rfam database...	0.88	0.78	1.00	21	2464	0	0	0	0	6
PDB_00829	Purine links to Rfam database...	0.86	0.75	1.00	18	2260	0	0	0	0	6
PDB_00876	HIV_FE links to Rfam database...	0.97	0.95	1.00	19	971	0	0	0	0	1
PDB_01002	tRNA links to Rfam database...	0.95	0.90	1.00	19	2756	2	0	0	2	2
PDB_01020	Purine links to Rfam database...	0.86	0.74	1.00	17	2261	1	0	0	1	6
PDB_01050	UnaL2 links to Rfam database...	0.92	0.85	1.00	11	619	2	0	0	2	2
PDB_01053	tRNA links to Rfam database...	1.00	1.00	1.00	16	1362	0	0	0	0	0
PDB_01073	SAM links to Rfam database...	0.52	0.47	0.57	16	4343	13	2	10	1	18
PDB_01114	TPP links to Rfam database...	0.45	0.37	0.56	10	2832	8	0	8	0	17
PDB_01152	HIV_FS2 links to Rfam database...	0.88	0.79	1.00	11	550	0	0	0	0	3
PDB_01236	ykoK links to Rfam database...	0.79	0.70	0.88	38	11585	6	0	5	1	16
RFA_00389	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00390	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00391	Hammerhead_3 links to Rfam database...	0.93	0.87	1.00	13	1418	2	0	0	2	2
RFA_00396	Hammerhead_3 links to Rfam database...	0.97	0.93	1.00	14	1417	2	0	0	2	1
RFA_00402	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	0	0	0	0	0
RFA_00409	Hammerhead_3 links to Rfam database...	0.77	0.60	1.00	9	1422	1	0	0	1	6
RFA_00416	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1470	4	0	0	4	0
RFA_00433	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00434	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00436	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00440	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1470	2	0	0	2	0
RFA_00442	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1416	2	0	0	2	0
RFA_00444	Hammerhead_3 links to Rfam database...	1.00	1.00	1.00	15	1525	1	0	0	1	0
RFA_00583	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4935	6	0	0	6	0
RFA_00584	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	2911	9	0	0	9	0
RFA_00585	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4836	8	0	0	8	0
RFA_00586	Y_RNA links to Rfam database...	0.89	0.80	1.00	12	3904	7	0	0	7	3
RFA_00587	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4836	8	0	0	8	0
RFA_00588	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4545	13	0	0	13	0
RFA_00589	Y_RNA links to Rfam database...	1.00	1.00	1.00	15	4356	15	0	0	15	0
RFA_00594	Y_RNA links to Rfam database...	0.90	0.87	0.93	13	2761	4	0	1	3	2
RFA_00596	Y_RNA links to Rfam database...	0.00	0.00	0.00	0	5983	16	5	7	4	15
RFA_00658	Hammerhead_1 links to Rfam database...	0.59	0.50	0.70	7	1118	5	0	3	2	7
RFA_00664	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	980	11	0	10	1	14
RFA_00667	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	981	10	1	8	1	14
RFA_00668	Hammerhead_1 links to Rfam database...	0.50	0.43	0.60	6	980	4	0	4	0	8
RFA_00672	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	895	10	0	8	2	13
RFA_00673	Hammerhead_1 links to Rfam database...	0.47	0.36	0.63	5	1120	4	0	3	1	9
RFA_00674	Hammerhead_1 links to Rfam database...	0.96	0.93	1.00	13	1115	1	0	0	1	1
RFA_00675	Hammerhead_1 links to Rfam database...	0.28	0.29	0.29	4	976	10	1	9	0	10
RFA_00677	Hammerhead_1 links to Rfam database...	0.74	0.71	0.77	10	977	6	0	3	3	4
RFA_00678	Hammerhead_1 links to Rfam database...	0.53	0.29	1.00	4	942	0	0	0	0	10
RFA_00680	Hammerhead_1 links to Rfam database...	0.74	0.71	0.77	10	1115	6	0	3	3	4
RFA_00704	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	983	8	0	7	1	14
RFA_00707	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	1030	5	0	5	0	14
RFA_00715	Hammerhead_1 links to Rfam database...	-0.01	0.00	0.00	0	936	10	0	10	0	14
RFA_00717	Hammerhead_1 links to Rfam database...	0.69	0.64	0.75	9	891	3	0	3	0	5
RFA_00730	s2m links to Rfam database...	0.43	0.42	0.45	5	892	7	1	5	1	7
RFA_00731	s2m links to Rfam database...	0.48	0.42	0.56	5	894	5	1	3	1	7
RFA_00733	s2m links to Rfam database...	0.43	0.42	0.45	5	892	7	1	5	1	7
RFA_00734	s2m links to Rfam database...	0.67	0.58	0.78	7	894	3	0	2	1	5
RFA_00736	s2m links to Rfam database...	0.48	0.42	0.56	5	894	5	1	3	1	7
RFA_00737	s2m links to Rfam database...	0.43	0.42	0.45	5	892	7	0	6	1	7
RFA_00745	s2m links to Rfam database...	0.43	0.42	0.45	5	935	7	1	5	1	7
RFA_00749	s2m links to Rfam database...	0.48	0.42	0.56	5	894	5	1	3	1	7
RFA_00758	s2m links to Rfam database...	0.40	0.33	0.50	4	895	4	2	2	0	8
RFA_00762	s2m links to Rfam database...	0.31	0.33	0.31	4	890	9	2	7	0	8
RFA_00763	s2m links to Rfam database...	0.43	0.42	0.45	5	892	7	1	5	1	7
RFA_00764	s2m links to Rfam database...	0.43	0.42	0.45	5	892	7	1	5	1	7
RFA_00765	s2m links to Rfam database...	0.51	0.42	0.63	5	895	4	0	3	1	7
RFA_00786	Gammaretro_CES links to Rfam database...	0.21	0.19	0.25	6	5026	19	2	16	1	26
RFA_00791	Gammaretro_CES links to Rfam database...	0.60	0.56	0.64	18	5123	11	0	10	1	14
RFA_00792	Gammaretro_CES links to Rfam database...	0.97	0.94	1.00	30	5020	1	0	0	1	2
RFA_00801	Gammaretro_CES links to Rfam database...	0.69	0.63	0.77	20	5024	8	0	6	2	12
SPR_00007	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00009	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	0	0	0	0	0
SPR_00010	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00012	tRNA links to Rfam database...	0.97	0.95	1.00	19	2831	0	0	0	0	1
SPR_00013	tRNA links to Rfam database...	0.97	0.95	1.00	19	2831	0	0	0	0	1
SPR_00016	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00017	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00025	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	1	0	0	1	0
SPR_00026	tRNA links to Rfam database...	0.90	0.81	1.00	17	2909	0	0	0	0	4
SPR_00027	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00036	tRNA links to Rfam database...	0.89	0.80	1.00	16	2759	1	0	0	1	4
SPR_00045	tRNA links to Rfam database...	0.77	0.77	0.77	17	2828	5	0	5	0	5
SPR_00064	tRNA links to Rfam database...	0.52	0.57	0.48	12	2825	13	2	11	0	9
SPR_00065	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00066	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00068	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00070	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00074	tRNA links to Rfam database...	0.97	0.95	1.00	19	2831	1	0	0	1	1
SPR_00079	tRNA links to Rfam database...	0.83	0.68	1.00	13	2472	1	0	0	1	6
SPR_00086	tRNA links to Rfam database...	0.76	0.76	0.76	16	2829	5	2	3	0	5
SPR_00087	tRNA links to Rfam database...	0.42	0.45	0.41	9	2828	14	4	9	1	11
SPR_00088	tRNA links to Rfam database...	0.42	0.45	0.41	9	2828	14	4	9	1	11
SPR_00089	tRNA links to Rfam database...	0.42	0.45	0.41	9	2828	14	4	9	1	11
SPR_00090	tRNA links to Rfam database...	0.95	0.90	1.00	18	2832	0	0	0	0	2
SPR_00091	tRNA links to Rfam database...	0.42	0.45	0.41	9	2828	14	4	9	1	11
SPR_00095	tRNA links to Rfam database...	0.76	0.76	0.76	16	2829	5	2	3	0	5
SPR_00111	tRNA links to Rfam database...	1.00	1.00	1.00	21	2680	1	0	0	1	0
SPR_00112	tRNA links to Rfam database...	1.00	1.00	1.00	21	2680	2	0	0	2	0
SPR_00115	tRNA links to Rfam database...	0.83	0.81	0.85	17	2681	3	1	2	0	4
SPR_00117	tRNA links to Rfam database...	0.68	0.71	0.65	15	2827	8	1	7	0	6
SPR_00139	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	1	0	0	1	0
SPR_00153	tRNA links to Rfam database...	0.40	0.38	0.42	8	2907	11	3	8	0	13
SPR_00155	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00156	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00176	tRNA links to Rfam database...	0.53	0.55	0.52	11	2829	10	2	8	0	9
SPR_00177	tRNA links to Rfam database...	0.55	0.57	0.55	12	2828	10	3	7	0	9
SPR_00178	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00191	tRNA links to Rfam database...	0.18	0.19	0.19	4	2829	17	4	13	0	17
SPR_00200	tRNA links to Rfam database...	0.74	0.76	0.73	16	2828	6	3	3	0	5
SPR_00224	tRNA links to Rfam database...	1.00	1.00	1.00	20	3721	3	0	0	3	0
SPR_00271	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00273	tRNA links to Rfam database...	0.76	0.76	0.76	16	2829	6	0	5	1	5
SPR_00276	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00277	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00294	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00295	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	1	0	0	1	0
SPR_00314	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	2	0	0	2	0
SPR_00315	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	2	0	0	2	0
SPR_00317	tRNA links to Rfam database...	0.56	0.60	0.52	12	2903	11	5	6	0	8
SPR_00318	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	2	0	0	2	0
SPR_00321	tRNA links to Rfam database...	0.76	0.76	0.76	16	2982	5	3	2	0	5
SPR_00333	tRNA links to Rfam database...	0.54	0.62	0.48	13	2748	15	4	10	1	8
SPR_00352	tRNA links to Rfam database...	0.71	0.76	0.67	16	2902	8	3	5	0	5
SPR_00353	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00357	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00358	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00370	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	0	0	0	0	0
SPR_00386	tRNA links to Rfam database...	0.91	1.00	0.83	20	4162	8	4	0	4	0
SPR_00414	tRNA links to Rfam database...	0.95	0.95	0.95	20	3549	5	0	1	4	1
SPR_00415	tRNA links to Rfam database...	0.62	0.57	0.67	12	3552	10	3	3	4	9
SPR_00417	tRNA links to Rfam database...	0.60	0.55	0.67	12	3552	10	0	6	4	10
SPR_00418	tRNA links to Rfam database...	0.60	0.55	0.67	12	3552	10	0	6	4	10
SPR_00434	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00435	tRNA links to Rfam database...	0.76	0.76	0.76	16	2829	7	0	5	2	5
SPR_00436	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	2	0	0	2	0
SPR_00437	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	2	0	0	2	0
SPR_00438	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	0	0	0	0	0
SPR_00452	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00455	tRNA links to Rfam database...	0.31	0.33	0.30	7	2827	16	5	11	0	14
SPR_00456	tRNA links to Rfam database...	0.57	0.57	0.57	12	2829	12	1	8	3	9
SPR_00476	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	0	0	0	0	0
SPR_00479	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00482	tRNA links to Rfam database...	0.90	0.81	1.00	17	2684	0	0	0	0	4
SPR_00483	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00487	tRNA links to Rfam database...	0.90	0.82	1.00	18	2683	0	0	0	0	4
SPR_00493	tRNA links to Rfam database...	0.68	0.68	0.68	15	2753	7	2	5	0	7
SPR_00496	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	0	0	0	0	0
SPR_00497	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	0	0	0	0	0
SPR_00502	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00504	tRNA links to Rfam database...	1.00	1.00	1.00	20	2830	0	0	0	0	0
SPR_00505	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00506	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00509	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00512	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00513	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00518	tRNA links to Rfam database...	1.00	1.00	1.00	20	2906	0	0	0	0	0
SPR_00548	tRNA links to Rfam database...	0.90	0.86	0.95	18	3384	1	0	1	0	3
SPR_00557	tRNA links to Rfam database...	1.00	1.00	1.00	21	2829	0	0	0	0	0
SPR_00561	tRNA links to Rfam database...	0.40	0.43	0.39	9	2827	14	1	13	0	12
SPR_00590	tRNA links to Rfam database...	0.83	0.85	0.81	17	2982	6	1	3	2	3
SPR_00593	tRNA links to Rfam database...	0.39	0.37	0.41	7	2758	10	2	8	0	12
SPR_00595	tRNA links to Rfam database...	0.78	0.76	0.80	16	2755	4	2	2	0	5
SPR_00598	tRNA links to Rfam database...	0.87	0.81	0.94	17	2985	2	0	1	1	4
SPR_00610	tRNA links to Rfam database...	0.87	0.81	0.94	17	2538	2	0	1	1	4
SPR_00620	tRNA links to Rfam database...	0.79	0.81	0.77	17	2981	6	2	3	1	4
SPR_00721	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	2	0	0	2	0
SPR_00722	tRNA links to Rfam database...	0.74	0.80	0.70	16	2903	7	5	2	0	4
SPR_00758	tRNA links to Rfam database...	0.58	0.57	0.60	12	2983	8	1	7	0	9
SPR_00760	tRNA links to Rfam database...	1.00	1.00	1.00	21	3549	0	0	0	0	0
SPR_00777	tRNA links to Rfam database...	0.53	0.55	0.52	11	2607	11	3	7	1	9
SPR_00867	tRNA links to Rfam database...	1.00	1.00	1.00	21	2905	0	0	0	0	0
SPR_00868	tRNA links to Rfam database...	0.95	0.95	0.95	20	2905	2	0	1	1	1
SPR_00943	tRNA links to Rfam database...	0.85	0.85	0.85	17	2536	5	0	3	2	3
SPR_00957	tRNA links to Rfam database...	0.78	0.76	0.80	16	2983	5	0	4	1	5
SPR_01040	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	1	0	0	1	0
SPR_01088	tRNA links to Rfam database...	0.53	0.57	0.50	12	2902	12	4	8	0	9
SPR_01095	tRNA links to Rfam database...	0.76	0.76	0.76	16	2829	7	0	5	2	5
SPR_01106	tRNA links to Rfam database...	0.51	0.52	0.50	11	2534	11	3	8	0	10
SPR_01117	tRNA links to Rfam database...	1.00	1.00	1.00	21	2982	1	0	0	1	0
SPR_01157	tRNA links to Rfam database...	1.00	1.00	1.00	21	2754	1	0	0	1	0
SRP_00008	Bacteria_small_SRP links to Rfam database...	0.61	0.60	0.63	15	2902	9	2	7	0	10
SRP_00020	Bacteria_small_SRP links to Rfam database...	0.73	0.73	0.73	24	5532	10	1	8	1	9
SRP_00038	Bacteria_small_SRP links to Rfam database...	0.18	0.18	0.19	6	5018	26	2	24	0	27
SRP_00042	Bacteria_small_SRP links to Rfam database...	0.41	0.36	0.47	9	3986	12	1	9	2	16
SRP_00044	Bacteria_small_SRP links to Rfam database...	0.52	0.53	0.52	17	6072	17	3	13	1	15
SRP_00046	Bacteria_small_SRP links to Rfam database...	0.57	0.56	0.58	18	4722	14	1	12	1	14
SRP_00051	Bacteria_small_SRP links to Rfam database...	0.27	0.30	0.25	9	5424	29	9	18	2	21
SRP_00054	Bacteria_small_SRP links to Rfam database...	0.24	0.25	0.24	8	5532	25	3	22	0	24
SRP_00057	Bacteria_small_SRP links to Rfam database...	0.74	0.69	0.80	24	6298	7	1	5	1	11
SRP_00058	Bacteria_small_SRP links to Rfam database...	0.38	0.38	0.38	13	5744	23	4	17	2	21
SRP_00072	Bacteria_small_SRP links to Rfam database...	0.25	0.28	0.24	8	6294	26	3	23	0	21
SRP_00074	Bacteria_small_SRP links to Rfam database...	0.00	0.00	0.00	0	6522	36	4	29	3	29
SRP_00075	Bacteria_small_SRP links to Rfam database...	0.24	0.24	0.26	8	5534	25	1	22	2	26
SRP_00077	Bacteria_small_SRP links to Rfam database...	0.37	0.38	0.37	14	6632	24	4	20	0	23
SRP_00081	Bacteria_small_SRP links to Rfam database...	0.38	0.39	0.39	12	5534	19	2	17	0	19
SRP_00084	Bacteria_small_SRP links to Rfam database...	0.65	0.56	0.76	19	5435	6	2	4	0	15
SRP_00094	Bacteria_small_SRP links to Rfam database...	0.61	0.63	0.60	15	4070	12	1	9	2	9
SRP_00095	Bacteria_small_SRP links to Rfam database...	0.26	0.28	0.26	7	3978	20	5	15	0	18
SRP_00098	Bacteria_small_SRP links to Rfam database...	0.36	0.35	0.38	13	6407	22	2	19	1	24
SRP_00105	Bacteria_small_SRP links to Rfam database...	0.30	0.29	0.32	10	5534	21	0	21	0	24
SRP_00107	Bacteria_small_SRP links to Rfam database...	0.13	0.16	0.12	3	3630	24	4	18	2	16
SRP_00121	Bacteria_small_SRP links to Rfam database...	0.53	0.48	0.60	12	4258	8	1	7	0	13
SRP_00128	Bacteria_small_SRP links to Rfam database...	0.45	0.44	0.46	16	6751	19	1	18	0	20
SRP_00132	Bacteria_small_SRP links to Rfam database...	0.35	0.34	0.36	10	4823	21	2	16	3	19
SRP_00134	Bacteria_large_SRP links to Rfam database...	0.16	0.17	0.16	5	5964	29	6	20	3	24
SRP_00141	Bacteria_small_SRP links to Rfam database...	0.84	0.80	0.87	33	6290	5	1	4	0	8
SRP_00161	Bacteria_small_SRP links to Rfam database...	0.39	0.41	0.38	9	2826	16	3	12	1	13
SRP_00162	Bacteria_small_SRP links to Rfam database...	0.51	0.48	0.55	11	2906	10	2	7	1	12
SRP_00163	Bacteria_small_SRP links to Rfam database...	0.27	0.27	0.28	7	3461	19	4	14	1	19
SRP_00164	Bacteria_small_SRP links to Rfam database...	0.28	0.29	0.29	10	6868	25	3	22	0	25
SRP_00170	Bacteria_small_SRP links to Rfam database...	0.37	0.36	0.39	9	4072	15	4	10	1	16
SRP_00194	Bacteria_small_SRP links to Rfam database...	0.39	0.33	0.47	7	3225	8	0	8	0	14
SRP_00200	Bacteria_small_SRP links to Rfam database...	0.87	0.78	0.97	28	6874	1	0	1	0	8
SRP_00209	Bacteria_small_SRP links to Rfam database...	0.47	0.48	0.46	13	4628	15	3	12	0	14
SRP_00213	Bacteria_small_SRP links to Rfam database...	0.37	0.40	0.36	10	4158	18	7	11	0	15
SRP_00215	Bacteria_small_SRP links to Rfam database...	0.58	0.52	0.65	13	3220	7	2	5	0	12
SRP_00227	Bacteria_small_SRP links to Rfam database...	0.63	0.58	0.69	18	5125	8	0	8	0	13
SRP_00231	Bacteria_small_SRP links to Rfam database...	0.62	0.59	0.67	20	5430	10	2	8	0	14
SRP_00233	Bacteria_small_SRP links to Rfam database...	0.24	0.24	0.25	8	5119	25	1	23	1	25
SRP_00243	Bacteria_small_SRP links to Rfam database...	0.34	0.29	0.41	9	5129	13	2	11	0	22
SRP_00244	Bacteria_small_SRP links to Rfam database...	0.78	0.69	0.87	27	6872	5	2	2	1	12
SRP_00250	Bacteria_small_SRP links to Rfam database...	0.51	0.50	0.53	18	6752	18	2	14	2	18
SRP_00251	Bacteria_small_SRP links to Rfam database...	0.66	0.67	0.65	24	6984	13	0	13	0	12
SRP_00266	Bacteria_small_SRP links to Rfam database...	0.68	0.55	0.84	16	4637	3	0	3	0	13
SRP_00268	Bacteria_small_SRP links to Rfam database...	0.38	0.37	0.40	10	4161	15	3	12	0	17
SRP_00269	Bacteria_small_SRP links to Rfam database...	0.43	0.42	0.44	14	5018	19	2	16	1	19
SRP_00270	Bacteria_small_SRP links to Rfam database...	0.26	0.26	0.27	8	4626	23	2	20	1	23
SRP_00271	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	3217	23	3	20	0	24
SRP_00273	Bacteria_small_SRP links to Rfam database...	0.89	0.88	0.90	35	6747	5	2	2	1	5
SRP_00274	Bacteria_small_SRP links to Rfam database...	0.83	0.79	0.88	30	6869	4	1	3	0	8
SRP_00295	Bacteria_small_SRP links to Rfam database...	0.74	0.74	0.74	28	6865	10	2	8	0	10
SRP_00303	Bacteria_small_SRP links to Rfam database...	0.35	0.34	0.37	11	6640	19	1	18	0	21
SRP_00310	Bacteria_small_SRP links to Rfam database...	0.60	0.57	0.65	13	2906	8	1	6	1	10
SRP_00312	Bacteria_small_SRP links to Rfam database...	0.35	0.37	0.33	10	4156	20	7	13	0	17
SRP_00315	Bacteria_small_SRP links to Rfam database...	0.50	0.43	0.59	10	2909	7	1	6	0	13
SRP_00318	Bacteria_small_SRP links to Rfam database...	0.50	0.43	0.59	10	2986	7	1	6	0	13
SRP_00325	Bacteria_small_SRP links to Rfam database...	0.75	0.73	0.77	24	4340	8	0	7	1	9
SRP_00326	Bacteria_small_SRP links to Rfam database...	0.60	0.58	0.62	18	5021	12	3	8	1	13
SRP_00333	Bacteria_small_SRP links to Rfam database...	0.70	0.65	0.76	22	5122	7	3	4	0	12
SRP_00338	Bacteria_small_SRP links to Rfam database...	0.75	0.75	0.75	27	5424	9	3	6	0	9
SRP_00341	Bacteria_small_SRP links to Rfam database...	-0.01	0.00	0.00	0	4731	22	4	18	0	31
SRP_00342	Bacteria_small_SRP links to Rfam database...	0.22	0.24	0.21	6	3977	22	5	17	0	19
SRP_00350	Bacteria_small_SRP links to Rfam database...	0.34	0.33	0.36	9	3891	16	6	10	0	18
SRP_00356	Bacteria_small_SRP links to Rfam database...	0.47	0.43	0.52	13	5025	12	4	8	0	17
SRP_00357	Bacteria_small_SRP links to Rfam database...	0.46	0.47	0.46	17	5319	20	3	17	0	19
SRP_00358	Bacteria_small_SRP links to Rfam database...	0.39	0.37	0.41	13	6296	19	1	18	0	22
SRP_00367	Bacteria_small_SRP links to Rfam database...	0.45	0.43	0.47	15	6754	17	0	17	0	20
SRP_00369	Bacteria_small_SRP links to Rfam database...	0.60	0.54	0.68	19	5750	9	0	9	0	16
SRP_00383	Bacteria_small_SRP links to Rfam database...	0.13	0.13	0.14	3	3219	18	2	16	0	21

^top

Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.

Table of contents:

Overview

Performance plots

Performance of RSpredict(20) - scored higher in this pairwise comparison

1. Total counts & total scores for RSpredict(20)

2. Individual counts for RSpredict(20) [ download as .csv ]

Performance of McQFold - scored lower in this pairwise comparison

1. Total counts & total scores for McQFold

2. Individual counts for McQFold [ download as .csv ]