CompaRNA - on-line benchmarks of RNA structure prediction methods

Laboratory of Structural Bioinformatics @ Adam Mickiewicz University in Poznan

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Overview

Metric	Afold		RSpredict(20)
MCC	0.556	>	0.034
Average MCC ± 95% Confidence Intervals	0.555 ± 0.022	>	0.029 ± 0.013
Sensitivity	0.544	>	0.026
Positive Predictive Value	0.570	>	0.047
Total TP	10335	>	496
Total TN	10410719	<	10418241
Total FP	8703	<	10415
Total FP CONTRA	957	<	1329
Total FP INCONS	6837	<	8782
Total FP COMP	909	>	304
Total FN	8662	<	18501
P-value	3.56938820447e-08

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Performance plots

Comparison of performance of Afold and RSpredict(20). Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data (individual counts for Afold and RSpredict(20)).
Average Matthews Correlation Coefficients (MCC) with 95% confidence intervals (CIs) were plotted for different RNA families, for which at least 3 members were present in the benchmarking dataset. 'n' denotes the number of MCCs used to calculate the average and CI. See tables below for raw data (individual counts for Afold and RSpredict(20)).
Comparison of average Matthews Correlation Coefficients (MCCs) for Afold and RSpredict(20). The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data (individual counts for Afold and RSpredict(20)).

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Performance of Afold - scored higher in this pairwise comparison

1. Total counts & total scores for Afold

Total Base Pair Counts
Total TP	10335
Total TN	10410719
Total FP	8703
Total FP CONTRA	957
Total FP INCONS	6837
Total FP COMP	909
Total FN	8662

Total Scores
MCC	0.556
Average MCC ± 95% Confidence Intervals	0.555 ± 0.022
Sensitivity	0.544
Positive Predictive Value	0.570
Nr of predictions	185

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2. Individual counts for Afold [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00004	RNaseP_bact_a links to Rfam database...	0.51	0.52	0.51	50	47797	49	10	38	1	47
ASE_00005	RNaseP_bact_a links to Rfam database...	0.61	0.56	0.66	66	57870	39	0	34	5	51
ASE_00006	RNaseP_bact_a links to Rfam database...	0.66	0.67	0.65	62	47491	36	7	26	3	31
ASE_00007	RNaseP_bact_a links to Rfam database...	0.56	0.53	0.59	58	59586	45	1	40	4	52
ASE_00012	RNaseP_bact_a links to Rfam database...	0.41	0.39	0.43	48	73808	72	1	63	8	75
ASE_00020	RNaseP_bact_a links to Rfam database...	0.57	0.54	0.60	68	73807	46	6	39	1	58
ASE_00021	RNaseP_bact_a links to Rfam database...	0.54	0.51	0.59	81	104058	66	7	50	9	79
ASE_00028	RNaseP_bact_b links to Rfam database...	0.58	0.56	0.61	70	84551	54	4	41	9	56
ASE_00037	RNaseP_bact_a links to Rfam database...	0.34	0.32	0.37	35	59245	63	0	60	3	75
ASE_00038	RNaseP_bact_a links to Rfam database...	0.53	0.52	0.54	53	53529	48	4	42	2	48
ASE_00040	RNaseP_bact_a links to Rfam database...	0.50	0.47	0.53	63	78883	63	5	52	6	70
ASE_00041	RNaseP_bact_a links to Rfam database...	0.53	0.51	0.55	55	57530	51	2	43	6	53
ASE_00042	RNaseP_bact_a links to Rfam database...	0.44	0.42	0.47	61	89969	73	3	67	3	84
ASE_00044	RNaseP_bact_a links to Rfam database...	0.74	0.70	0.78	74	54520	26	3	18	5	31
ASE_00045	RNaseP_bact_b links to Rfam database...	0.65	0.65	0.65	52	47198	37	7	21	9	28
ASE_00064	RNaseP_bact_a links to Rfam database...	0.43	0.43	0.44	38	45364	54	5	44	5	51
ASE_00068	RNaseP_bact_a links to Rfam database...	0.33	0.32	0.36	27	37599	50	2	47	1	58
ASE_00074	RNaseP_bact_a links to Rfam database...	0.48	0.47	0.50	56	67784	57	7	49	1	63
ASE_00075	RNaseP_bact_a links to Rfam database...	0.65	0.59	0.72	95	108679	46	3	34	9	67
ASE_00077	RNaseP_bact_a links to Rfam database...	0.52	0.51	0.54	44	45068	39	6	32	1	42
ASE_00078	RNaseP_bact_a links to Rfam database...	0.67	0.67	0.67	56	42988	32	5	22	5	27
ASE_00080	RNaseP_bact_a links to Rfam database...	0.50	0.48	0.52	59	71518	59	3	51	5	64
ASE_00081	RNaseP_bact_a links to Rfam database...	0.46	0.45	0.46	44	49675	53	5	46	2	53
ASE_00082	RNaseP_bact_a links to Rfam database...	0.57	0.54	0.61	63	70396	51	1	40	10	53
ASE_00083	RNaseP_bact_a links to Rfam database...	0.71	0.67	0.76	74	62383	32	1	23	8	36
ASE_00084	RNaseP_bact_a links to Rfam database...	0.72	0.71	0.73	70	53532	30	6	20	4	29
ASE_00087	RNaseP_bact_a links to Rfam database...	0.56	0.51	0.61	74	88288	54	5	43	6	70
ASE_00090	RNaseP_bact_a links to Rfam database...	0.46	0.47	0.47	47	55510	59	6	48	5	54
ASE_00092	RNaseP_bact_a links to Rfam database...	0.68	0.65	0.72	73	63444	35	3	26	6	40
ASE_00104	RNaseP_bact_a links to Rfam database...	0.53	0.50	0.56	60	64153	49	8	40	1	59
ASE_00114	RNaseP_bact_b links to Rfam database...	0.40	0.40	0.39	31	45372	58	6	42	10	46
ASE_00115	RNaseP_bact_a links to Rfam database...	0.55	0.54	0.56	55	54517	51	1	42	8	46
ASE_00118	RNaseP_bact_a links to Rfam database...	0.38	0.38	0.39	39	60625	64	5	57	2	63
ASE_00119	RNaseP_bact_a links to Rfam database...	0.63	0.60	0.67	65	62738	35	1	31	3	43
ASE_00123	RNaseP_bact_a links to Rfam database...	0.44	0.42	0.46	36	38425	48	3	39	6	49
ASE_00125	RNaseP_bact_a links to Rfam database...	0.64	0.63	0.65	55	39255	32	4	26	2	33
ASE_00126	RNaseP_bact_a links to Rfam database...	0.74	0.74	0.73	61	40387	27	3	19	5	21
ASE_00128	RNaseP_bact_a links to Rfam database...	0.74	0.72	0.77	72	53207	30	2	20	8	28
ASE_00129	RNaseP_bact_a links to Rfam database...	0.77	0.74	0.80	82	62732	26	3	18	5	29
ASE_00131	RNaseP_bact_a links to Rfam database...	0.62	0.55	0.70	47	39273	31	0	20	11	38
ASE_00134	RNaseP_bact_a links to Rfam database...	0.43	0.42	0.44	40	50313	54	7	43	4	55
ASE_00135	RNaseP_bact_a links to Rfam database...	0.45	0.44	0.45	48	63084	63	8	50	5	61
ASE_00136	RNaseP_bact_a links to Rfam database...	0.69	0.65	0.72	60	48122	28	3	20	5	32
ASE_00137	RNaseP_bact_a links to Rfam database...	0.44	0.43	0.45	42	48423	53	4	47	2	56
ASE_00138	RNaseP_bact_a links to Rfam database...	0.51	0.49	0.53	40	40395	36	4	31	1	41
ASE_00140	RNaseP_bact_a links to Rfam database...	0.62	0.57	0.67	71	70770	38	6	29	3	54
ASE_00146	RNaseP_bact_a links to Rfam database...	0.55	0.52	0.59	64	70768	50	2	42	6	60
ASE_00153	RNaseP_nuc links to Rfam database...	0.66	0.67	0.65	49	57555	68	2	24	42	24
ASE_00161	RNaseP_bact_b links to Rfam database...	0.27	0.29	0.26	25	53531	73	15	57	1	62
ASE_00163	RNaseP_bact_a links to Rfam database...	0.64	0.63	0.66	59	53211	43	4	27	12	34
ASE_00165	RNaseP_bact_a links to Rfam database...	0.64	0.60	0.67	61	52884	31	5	25	1	40
ASE_00170	RNaseP_bact_a links to Rfam database...	0.70	0.68	0.72	63	48740	27	2	23	2	30
ASE_00171	RNaseP_bact_a links to Rfam database...	0.70	0.69	0.71	65	48425	28	5	21	2	29
ASE_00172	RNaseP_bact_a links to Rfam database...	0.62	0.61	0.63	65	58893	41	8	30	3	41
ASE_00174	RNaseP_bact_a links to Rfam database...	0.59	0.57	0.62	62	60975	42	6	32	4	47
ASE_00175	RNaseP_bact_a links to Rfam database...	0.59	0.59	0.59	63	59925	45	7	36	2	44
ASE_00179	RNaseP_bact_a links to Rfam database...	0.64	0.65	0.62	55	44164	35	7	27	1	29
ASE_00180	RNaseP_bact_a links to Rfam database...	0.71	0.69	0.74	69	51267	31	2	22	7	31
ASE_00181	RNaseP_bact_a links to Rfam database...	0.54	0.53	0.55	56	57528	52	3	43	6	50
ASE_00182	RNaseP_bact_a links to Rfam database...	0.60	0.58	0.62	79	84128	49	6	42	1	57
ASE_00183	RNaseP_bact_a links to Rfam database...	0.71	0.70	0.72	79	61316	35	2	28	5	34
ASE_00185	RNaseP_bact_a links to Rfam database...	0.72	0.70	0.74	89	73416	38	6	25	7	39
ASE_00186	RNaseP_bact_a links to Rfam database...	0.73	0.69	0.78	91	78887	30	3	22	5	41
ASE_00190	RNaseP_bact_b links to Rfam database...	0.49	0.46	0.52	41	45372	44	7	31	6	49
ASE_00197	RNaseP_bact_a links to Rfam database...	0.49	0.46	0.52	67	89123	66	4	59	3	78
ASE_00198	RNaseP_bact_a links to Rfam database...	0.61	0.59	0.64	60	52556	40	6	28	6	42
ASE_00203	RNaseP_bact_a links to Rfam database...	0.70	0.69	0.72	66	46573	26	7	19	0	30
ASE_00212	RNaseP_bact_a links to Rfam database...	0.70	0.67	0.74	99	93827	39	3	32	4	49
ASE_00214	RNaseP_bact_a links to Rfam database...	0.72	0.72	0.73	74	56178	36	4	24	8	29
ASE_00215	RNaseP_bact_a links to Rfam database...	0.54	0.51	0.57	50	48429	39	4	33	2	49
ASE_00216	RNaseP_bact_a links to Rfam database...	0.67	0.68	0.66	56	39255	31	9	20	2	26
ASE_00217	RNaseP_bact_a links to Rfam database...	0.40	0.37	0.45	33	40396	48	3	38	7	57
ASE_00221	RNaseP_bact_a links to Rfam database...	0.49	0.45	0.54	53	64522	48	3	42	3	64
ASE_00228	RNaseP_bact_a links to Rfam database...	0.52	0.53	0.50	46	46879	46	14	32	0	40
ASE_00229	RNaseP_bact_a links to Rfam database...	0.61	0.61	0.62	53	42400	33	8	25	0	34
ASE_00231	RNaseP_bact_a links to Rfam database...	0.65	0.65	0.65	62	47800	33	5	28	0	34
ASE_00232	RNaseP_bact_a links to Rfam database...	0.63	0.64	0.61	54	38415	37	10	24	3	30
ASE_00234	RNaseP_bact_a links to Rfam database...	0.58	0.53	0.62	69	75355	47	3	39	5	60
ASE_00238	RNaseP_bact_a links to Rfam database...	0.59	0.59	0.60	67	64150	50	2	42	6	47
ASE_00241	RNaseP_bact_a links to Rfam database...	0.49	0.49	0.49	43	43868	47	7	38	2	44
ASE_00254	RNaseP_bact_a links to Rfam database...	0.49	0.46	0.52	38	36783	39	4	31	4	44
ASE_00255	RNaseP_bact_a links to Rfam database...	0.64	0.62	0.66	80	74570	45	7	34	4	50
ASE_00257	RNaseP_bact_a links to Rfam database...	0.55	0.55	0.55	53	50944	47	4	39	4	44
ASE_00263	RNaseP_bact_a links to Rfam database...	0.62	0.63	0.62	76	70377	49	5	42	2	44
ASE_00267	RNaseP_bact_a links to Rfam database...	0.32	0.31	0.34	27	45070	62	5	48	9	61
ASE_00270	RNaseP_bact_a links to Rfam database...	0.76	0.73	0.80	94	72272	29	4	20	5	34
ASE_00274	RNaseP_bact_a links to Rfam database...	0.45	0.44	0.46	45	55513	54	10	43	1	58
ASE_00277	RNaseP_bact_a links to Rfam database...	0.38	0.38	0.38	35	48112	61	9	49	3	56
ASE_00279	RNaseP_bact_a links to Rfam database...	0.68	0.66	0.71	67	53206	35	3	25	7	34
ASE_00280	RNaseP_bact_a links to Rfam database...	0.36	0.36	0.37	35	51909	65	4	55	6	63
ASE_00282	RNaseP_bact_a links to Rfam database...	0.56	0.55	0.57	70	77693	58	5	47	6	57
ASE_00283	RNaseP_bact_a links to Rfam database...	0.75	0.73	0.77	78	61675	30	3	20	7	29
ASE_00284	RNaseP_bact_a links to Rfam database...	0.62	0.60	0.64	65	58210	44	4	32	8	43
ASE_00285	RNaseP_bact_a links to Rfam database...	0.75	0.70	0.80	86	68899	28	3	18	7	36
ASE_00286	RNaseP_bact_a links to Rfam database...	0.43	0.42	0.43	39	46574	63	5	47	11	53
ASE_00287	RNaseP_bact_a links to Rfam database...	0.59	0.55	0.63	57	54856	39	2	31	6	46
ASE_00292	RNaseP_bact_a links to Rfam database...	0.62	0.58	0.66	80	81689	43	2	39	2	58
ASE_00294	RNaseP_bact_a links to Rfam database...	0.74	0.68	0.80	117	114335	32	2	27	3	54
ASE_00296	RNaseP_bact_a links to Rfam database...	0.25	0.24	0.27	35	91676	98	8	87	3	110
ASE_00297	RNaseP_bact_a links to Rfam database...	0.50	0.50	0.51	49	52878	53	4	44	5	49
ASE_00298	RNaseP_bact_a links to Rfam database...	0.28	0.27	0.29	31	67420	79	9	68	2	82
ASE_00305	RNaseP_bact_b links to Rfam database...	0.47	0.47	0.47	40	54529	56	10	36	10	45
ASE_00321	RNaseP_bact_b links to Rfam database...	0.40	0.40	0.41	35	54530	57	7	43	7	53
ASE_00328	RNaseP_bact_b links to Rfam database...	0.40	0.41	0.40	46	72656	75	3	66	6	66
ASE_00332	RNaseP_bact_a links to Rfam database...	0.56	0.54	0.59	75	81682	55	2	51	2	63
ASE_00340	RNaseP_bact_a links to Rfam database...	0.76	0.73	0.78	62	45977	26	6	11	9	23
ASE_00342	RNaseP_bact_a links to Rfam database...	0.57	0.54	0.60	62	62378	41	5	36	0	53
ASE_00361	RNaseP_bact_a links to Rfam database...	0.51	0.49	0.53	62	75349	59	7	48	4	65
ASE_00362	RNaseP_bact_a links to Rfam database...	0.61	0.60	0.61	55	48115	39	6	29	4	36
ASE_00363	RNaseP_bact_a links to Rfam database...	0.53	0.54	0.53	51	51263	47	5	41	1	43
ASE_00364	RNaseP_bact_a links to Rfam database...	0.42	0.42	0.43	44	54182	63	4	55	4	61
ASE_00366	RNaseP_bact_a links to Rfam database...	0.54	0.56	0.53	55	58549	52	10	39	3	43
ASE_00367	RNaseP_bact_a links to Rfam database...	0.28	0.29	0.27	25	42979	68	8	59	1	61
ASE_00369	RNaseP_bact_a links to Rfam database...	0.56	0.55	0.58	59	55843	44	4	39	1	48
ASE_00370	RNaseP_bact_a links to Rfam database...	0.63	0.63	0.62	53	41820	33	7	25	1	31
ASE_00372	RNaseP_bact_a links to Rfam database...	0.63	0.62	0.65	62	51907	39	6	28	5	38
ASE_00374	RNaseP_bact_a links to Rfam database...	0.53	0.52	0.54	46	44765	40	8	31	1	42
ASE_00376	RNaseP_bact_a links to Rfam database...	0.48	0.46	0.50	48	56857	52	4	44	4	57
ASE_00379	RNaseP_bact_a links to Rfam database...	0.57	0.55	0.60	49	45974	41	3	30	8	40
ASE_00382	RNaseP_bact_a links to Rfam database...	0.49	0.49	0.50	41	41823	45	6	35	4	43
ASE_00383	RNaseP_bact_a links to Rfam database...	0.58	0.55	0.62	58	54521	40	3	33	4	47
ASE_00384	RNaseP_bact_a links to Rfam database...	0.41	0.39	0.43	36	48432	58	2	46	10	56
ASE_00386	RNaseP_bact_a links to Rfam database...	0.65	0.65	0.65	62	50307	41	3	31	7	34
ASE_00387	RNaseP_bact_a links to Rfam database...	0.43	0.43	0.43	45	55841	59	6	53	0	59
ASE_00388	RNaseP_bact_a links to Rfam database...	0.43	0.42	0.44	37	45669	53	3	44	6	52
ASE_00390	RNaseP_bact_a links to Rfam database...	0.44	0.42	0.47	36	42118	52	6	35	11	49
ASE_00393	RNaseP_bact_a links to Rfam database...	0.37	0.35	0.39	33	47811	58	2	49	7	60
ASE_00394	RNaseP_bact_a links to Rfam database...	0.69	0.68	0.70	63	46881	29	5	22	2	30
ASE_00395	RNaseP_bact_a links to Rfam database...	0.65	0.63	0.68	53	41538	35	1	24	10	31
ASE_00396	RNaseP_bact_a links to Rfam database...	0.16	0.16	0.16	13	41535	71	2	66	3	70
ASE_00397	RNaseP_bact_a links to Rfam database...	0.54	0.54	0.54	57	54510	51	4	44	3	48
ASE_00398	RNaseP_bact_a links to Rfam database...	0.61	0.58	0.65	60	55852	37	1	32	4	44
ASE_00400	RNaseP_bact_a links to Rfam database...	0.53	0.53	0.54	56	57866	51	7	41	3	50
ASE_00401	RNaseP_bact_a links to Rfam database...	0.52	0.53	0.51	67	76897	65	13	51	1	59
ASE_00402	RNaseP_bact_a links to Rfam database...	0.41	0.40	0.43	34	42406	52	7	39	6	51
ASE_00403	RNaseP_bact_a links to Rfam database...	0.44	0.42	0.47	45	55849	55	4	47	4	62
ASE_00404	RNaseP_bact_a links to Rfam database...	0.55	0.54	0.57	46	42990	43	0	35	8	39
ASE_00411	RNaseP_bact_a links to Rfam database...	0.35	0.35	0.35	31	49366	63	7	51	5	58
ASE_00413	RNaseP_bact_a links to Rfam database...	0.55	0.58	0.52	47	44461	44	13	30	1	34
ASE_00415	RNaseP_bact_a links to Rfam database...	0.51	0.51	0.51	53	54843	53	7	43	3	50
ASE_00416	RNaseP_bact_a links to Rfam database...	0.65	0.61	0.68	78	77307	43	0	36	7	49
ASE_00419	RNaseP_bact_a links to Rfam database...	0.75	0.73	0.78	75	54850	26	5	16	5	28
ASE_00422	RNaseP_bact_a links to Rfam database...	0.44	0.44	0.45	41	46880	56	5	45	6	53
ASE_00427	RNaseP_nuc links to Rfam database...	0.15	0.20	0.12	9	40678	81	17	51	13	37
ASE_00428	RNaseP_bact_a links to Rfam database...	0.51	0.50	0.53	62	76520	58	5	49	4	63
ASE_00430	RNaseP_bact_a links to Rfam database...	0.64	0.63	0.66	61	46878	39	5	27	7	36
ASE_00437	RNaseP_bact_a links to Rfam database...	0.42	0.39	0.46	53	79285	64	4	59	1	82
ASE_00441	RNaseP_bact_a links to Rfam database...	0.77	0.72	0.83	81	64163	30	1	16	13	31
ASE_00448	RNaseP_bact_a links to Rfam database...	0.22	0.22	0.23	25	64150	91	6	80	5	87
ASE_00451	RNaseP_bact_a links to Rfam database...	0.61	0.57	0.66	71	70768	40	2	35	3	54
RFA_00599	Telomerase-vert links to Rfam database...	0.67	0.70	0.64	78	101353	66	16	28	22	33
RFA_00601	Telomerase-vert links to Rfam database...	0.09	0.11	0.08	12	99092	139	35	96	8	102
RFA_00602	Telomerase-vert links to Rfam database...	0.50	0.53	0.47	62	101344	91	18	51	22	54
SRP_00006	Metazoa_SRP links to Rfam database...	0.82	0.81	0.84	82	45655	19	3	13	3	19
SRP_00011	Plant_SRP links to Rfam database...	0.43	0.42	0.45	44	46262	54	4	50	0	60
SRP_00015	Plant_SRP links to Rfam database...	0.54	0.53	0.55	52	46265	48	8	35	5	47
SRP_00024	Bacteria_large_SRP links to Rfam database...	0.68	0.70	0.67	61	37584	31	4	26	1	26
SRP_00026	Bacteria_large_SRP links to Rfam database...	0.58	0.59	0.58	52	36766	46	4	34	8	36
SRP_00027	Bacteria_large_SRP links to Rfam database...	0.64	0.62	0.67	54	37047	28	3	24	1	33
SRP_00030	Bacteria_large_SRP links to Rfam database...	0.74	0.75	0.73	66	36766	26	4	20	2	22
SRP_00031	Bacteria_large_SRP links to Rfam database...	0.64	0.64	0.63	57	36225	37	4	29	4	32
SRP_00037	Bacteria_large_SRP links to Rfam database...	0.60	0.60	0.60	52	36498	37	4	31	2	35
SRP_00086	Metazoa_SRP links to Rfam database...	0.71	0.71	0.70	71	44152	31	3	27	1	29
SRP_00088	Bacteria_large_SRP links to Rfam database...	0.67	0.69	0.66	61	34098	32	3	29	0	28
SRP_00089	Bacteria_large_SRP links to Rfam database...	0.82	0.81	0.84	73	35691	14	1	13	0	17
SRP_00090	Bacteria_large_SRP links to Rfam database...	0.69	0.66	0.72	59	35429	25	1	22	2	31
SRP_00152	Plant_SRP links to Rfam database...	0.56	0.56	0.57	58	45651	45	1	43	1	45
SRP_00171	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	45348	103	15	88	0	88
SRP_00173	Bacteria_large_SRP links to Rfam database...	0.72	0.70	0.75	63	38142	29	1	20	8	27
SRP_00174	Bacteria_large_SRP links to Rfam database...	0.74	0.76	0.72	65	38691	29	8	17	4	21
SRP_00178	Plant_SRP links to Rfam database...	0.83	0.78	0.87	80	45661	14	1	11	2	22
SRP_00181	Plant_SRP links to Rfam database...	0.33	0.31	0.35	32	45964	60	1	59	0	70
SRP_00182	Plant_SRP links to Rfam database...	0.76	0.73	0.79	74	45962	21	3	17	1	27
SRP_00184	Plant_SRP links to Rfam database...	0.62	0.60	0.64	60	45962	39	2	32	5	40
SRP_00234	Bacteria_large_SRP links to Rfam database...	0.77	0.77	0.78	66	36230	25	1	18	6	20
SRP_00308	Bacteria_large_SRP links to Rfam database...	0.55	0.55	0.56	48	36229	42	9	29	4	40
SRP_00317	Metazoa_SRP links to Rfam database...	0.93	0.89	0.98	87	45061	10	0	2	8	11
SRP_00335	Bacteria_large_SRP links to Rfam database...	0.32	0.44	0.24	17	35173	76	26	29	21	22
SRP_00337	Bacteria_large_SRP links to Rfam database...	0.73	0.71	0.76	65	35425	23	1	20	2	26
SRP_00347	Metazoa_SRP links to Rfam database...	0.82	0.80	0.84	77	46573	21	3	12	6	19
TMR_00038	tmRNA links to Rfam database...	0.25	0.25	0.25	28	71140	89	12	73	4	82
TMR_00046	tmRNA links to Rfam database...	0.47	0.48	0.46	46	62734	61	10	45	6	50
TMR_00048	tmRNA links to Rfam database...	0.35	0.37	0.34	35	64876	73	9	60	4	60
TMR_00458	tmRNA links to Rfam database...	0.22	0.22	0.23	20	63458	76	7	61	8	73
TMR_00568	tmRNA links to Rfam database...	0.57	0.57	0.58	56	60629	50	3	38	9	43

^top

Performance of RSpredict(20) - scored lower in this pairwise comparison

1. Total counts & total scores for RSpredict(20)

Total Base Pair Counts
Total TP	496
Total TN	10418241
Total FP	10415
Total FP CONTRA	1329
Total FP INCONS	8782
Total FP COMP	304
Total FN	18501

Total Scores
MCC	0.034
Average MCC ± 95% Confidence Intervals	0.029 ± 0.013
Sensitivity	0.026
Positive Predictive Value	0.047
Nr of predictions	185

^top

2. Individual counts for RSpredict(20) [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00004	RNaseP_bact_a links to Rfam database...	0.01	0.01	0.02	1	47840	54	12	42	0	96
ASE_00005	RNaseP_bact_a links to Rfam database...	0.13	0.09	0.21	10	57923	37	1	36	0	107
ASE_00006	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	47543	43	3	40	0	93
ASE_00007	RNaseP_bact_a links to Rfam database...	0.05	0.04	0.07	4	59624	57	13	44	0	106
ASE_00012	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	73867	57	5	48	4	123
ASE_00020	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	73854	74	5	61	8	126
ASE_00021	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	104125	72	3	68	1	160
ASE_00028	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	84576	90	11	79	0	126
ASE_00037	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	59294	48	3	43	2	110
ASE_00038	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	53584	44	5	39	0	101
ASE_00040	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	78969	34	7	27	0	133
ASE_00041	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	57602	28	2	26	0	108
ASE_00042	RNaseP_bact_a links to Rfam database...	0.10	0.06	0.17	9	90046	45	4	41	0	136
ASE_00044	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	54577	38	8	30	0	105
ASE_00045	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	47218	60	6	54	0	80
ASE_00064	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	45395	56	6	50	0	89
ASE_00068	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	37625	53	1	49	3	85
ASE_00074	RNaseP_bact_a links to Rfam database...	0.10	0.06	0.17	7	67854	37	2	33	2	112
ASE_00075	RNaseP_bact_a links to Rfam database...	0.03	0.02	0.05	3	108746	70	3	59	8	159
ASE_00077	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	45116	34	1	33	0	86
ASE_00078	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	43029	42	5	37	0	83
ASE_00080	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	71576	59	1	54	4	123
ASE_00081	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	49718	52	3	49	0	97
ASE_00082	RNaseP_bact_a links to Rfam database...	0.01	0.01	0.02	1	70455	51	5	39	7	115
ASE_00083	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	62427	56	5	49	2	110
ASE_00084	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	53583	45	2	43	0	99
ASE_00087	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	88355	55	2	53	0	144
ASE_00090	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	55546	65	8	57	0	101
ASE_00092	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	63491	55	9	46	0	113
ASE_00104	RNaseP_bact_a links to Rfam database...	0.12	0.08	0.18	10	64206	47	8	37	2	109
ASE_00114	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	45389	62	20	42	0	77
ASE_00115	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	54548	68	7	60	1	101
ASE_00118	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	60672	56	7	47	2	102
ASE_00119	RNaseP_bact_a links to Rfam database...	0.03	0.02	0.04	2	62788	52	3	42	7	106
ASE_00123	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	38483	22	2	18	2	85
ASE_00125	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	39309	35	1	30	4	88
ASE_00126	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	40438	35	3	29	3	82
ASE_00128	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	53258	43	4	39	0	100
ASE_00129	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	62779	56	5	51	0	111
ASE_00131	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	39274	67	8	58	1	85
ASE_00134	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	50347	58	3	53	2	95
ASE_00135	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	63140	50	4	46	0	109
ASE_00136	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	48162	49	0	43	6	92
ASE_00137	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	48462	54	8	46	0	98
ASE_00138	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	40422	50	3	45	2	81
ASE_00140	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	70802	81	4	70	7	125
ASE_00146	RNaseP_bact_a links to Rfam database...	0.05	0.03	0.07	4	70819	53	5	48	0	120
ASE_00153	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	57594	47	12	24	11	73
ASE_00161	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	53550	82	16	62	4	87
ASE_00163	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	53255	51	11	35	5	93
ASE_00165	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	52920	55	14	41	0	101
ASE_00170	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	48767	61	5	56	0	93
ASE_00171	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	48468	50	7	41	2	94
ASE_00172	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	58942	55	7	47	1	106
ASE_00174	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	61015	60	7	53	0	109
ASE_00175	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	59976	55	5	50	0	107
ASE_00179	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	44222	32	6	25	1	84
ASE_00180	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	51312	49	6	42	1	100
ASE_00181	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	57585	47	12	33	2	106
ASE_00182	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	84196	62	11	48	3	136
ASE_00183	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	61379	48	2	44	2	113
ASE_00185	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	73478	58	8	50	0	128
ASE_00186	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	78937	66	12	54	0	132
ASE_00190	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	45411	41	7	33	1	90
ASE_00197	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	89207	48	1	45	2	145
ASE_00198	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	52603	48	3	44	1	102
ASE_00203	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46622	45	4	39	2	96
ASE_00212	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	93880	81	6	75	0	148
ASE_00214	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	56231	49	11	38	0	103
ASE_00215	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	48444	76	3	69	4	99
ASE_00216	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	39302	38	11	27	0	82
ASE_00217	RNaseP_bact_a links to Rfam database...	0.06	0.04	0.09	4	40423	43	5	38	0	86
ASE_00221	RNaseP_bact_a links to Rfam database...	0.12	0.09	0.18	10	64564	47	10	36	1	107
ASE_00228	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46906	70	8	57	5	86
ASE_00229	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	42431	55	12	43	0	87
ASE_00231	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	47852	43	5	38	0	96
ASE_00232	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	38461	45	2	40	3	84
ASE_00234	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	75400	71	6	60	5	129
ASE_00238	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	64206	57	6	49	2	114
ASE_00241	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	43916	45	8	32	5	87
ASE_00254	RNaseP_bact_a links to Rfam database...	0.02	0.01	0.03	1	36817	38	6	32	0	81
ASE_00255	RNaseP_bact_a links to Rfam database...	0.08	0.06	0.12	8	74622	65	5	56	4	122
ASE_00257	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	50989	51	4	47	0	97
ASE_00263	RNaseP_bact_a links to Rfam database...	0.02	0.02	0.03	2	70422	76	10	66	0	118
ASE_00267	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	45099	51	10	41	0	88
ASE_00270	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	72338	52	5	47	0	128
ASE_00274	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	55569	43	4	38	1	103
ASE_00277	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	48169	36	8	28	0	91
ASE_00279	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	53256	47	9	36	2	101
ASE_00280	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	51946	57	9	48	0	98
ASE_00282	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	77748	67	6	61	0	127
ASE_00283	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	61715	70	4	57	9	107
ASE_00284	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	58255	56	9	47	0	108
ASE_00285	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	68937	72	9	60	3	122
ASE_00286	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46631	36	6	28	2	92
ASE_00287	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	54902	45	5	39	1	103
ASE_00292	RNaseP_bact_a links to Rfam database...	0.10	0.07	0.13	10	81733	67	11	56	0	128
ASE_00294	RNaseP_bact_a links to Rfam database...	0.08	0.06	0.10	10	114384	87	9	78	0	161
ASE_00296	RNaseP_bact_a links to Rfam database...	0.10	0.07	0.14	10	91737	59	5	54	0	135
ASE_00297	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	52927	52	2	46	4	98
ASE_00298	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	67482	46	9	37	0	113
ASE_00305	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	54535	87	12	68	7	85
ASE_00321	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	54540	79	9	66	4	88
ASE_00328	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	72698	75	17	56	2	112
ASE_00332	RNaseP_bact_a links to Rfam database...	0.04	0.03	0.06	4	81740	67	5	61	1	134
ASE_00340	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46000	56	11	45	0	85
ASE_00342	RNaseP_bact_a links to Rfam database...	0.11	0.08	0.15	9	62422	50	15	35	0	106
ASE_00361	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	75396	71	4	66	1	127
ASE_00362	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	48153	52	5	47	0	91
ASE_00363	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	51317	45	8	35	2	94
ASE_00364	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	54241	47	6	38	3	105
ASE_00366	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	58603	56	10	40	6	98
ASE_00367	RNaseP_bact_a links to Rfam database...	0.02	0.01	0.03	1	43031	42	9	30	3	85
ASE_00369	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	55900	45	4	41	0	107
ASE_00370	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	41869	37	3	33	1	84
ASE_00372	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	51938	65	11	54	0	100
ASE_00374	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	44801	50	6	43	1	88
ASE_00376	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	56902	53	6	45	2	105
ASE_00379	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46010	46	12	34	0	89
ASE_00382	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	41857	50	15	33	2	84
ASE_00383	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	54575	40	8	32	0	105
ASE_00384	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	48471	45	11	34	0	92
ASE_00386	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	50354	49	7	42	0	96
ASE_00387	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	55893	52	9	43	0	104
ASE_00388	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	45709	45	6	38	1	89
ASE_00390	RNaseP_bact_a links to Rfam database...	0.06	0.05	0.08	4	42143	48	8	40	0	81
ASE_00393	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	47858	37	5	32	0	93
ASE_00394	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46928	46	4	39	3	93
ASE_00395	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	41569	48	7	40	1	84
ASE_00396	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	41584	33	1	31	1	83
ASE_00397	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	54567	48	3	45	0	105
ASE_00398	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	55878	67	13	54	0	104
ASE_00400	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	57912	63	3	55	5	106
ASE_00401	RNaseP_bact_a links to Rfam database...	0.01	0.01	0.02	1	76968	59	4	55	0	125
ASE_00402	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	42449	37	7	30	0	85
ASE_00403	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	55893	52	4	48	0	107
ASE_00404	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	43029	44	8	34	2	85
ASE_00411	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	49418	38	7	30	1	89
ASE_00413	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	44496	58	11	44	3	81
ASE_00415	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	54902	44	5	39	0	103
ASE_00416	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	77376	46	6	39	1	127
ASE_00419	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	54894	52	14	38	0	103
ASE_00422	RNaseP_bact_a links to Rfam database...	0.12	0.07	0.18	7	46933	31	5	26	0	87
ASE_00427	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	40707	50	19	29	2	46
ASE_00428	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	76592	46	8	36	2	125
ASE_00430	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46931	41	3	37	1	97
ASE_00437	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	79324	77	6	71	0	135
ASE_00441	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	64199	62	9	53	0	112
ASE_00448	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	64203	61	9	49	3	112
ASE_00451	RNaseP_bact_a links to Rfam database...	0.08	0.06	0.11	8	70803	65	15	50	0	117
RFA_00599	Telomerase-vert links to Rfam database...	0.00	0.00	0.00	0	101404	84	13	58	13	111
RFA_00601	Telomerase-vert links to Rfam database...	0.00	0.00	0.00	0	99153	84	11	71	2	114
RFA_00602	Telomerase-vert links to Rfam database...	0.00	0.00	0.00	0	101402	74	17	56	1	116
SRP_00006	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	45659	94	11	83	0	101
SRP_00011	Plant_SRP links to Rfam database...	0.18	0.16	0.20	17	46277	69	3	63	3	87
SRP_00015	Plant_SRP links to Rfam database...	0.21	0.20	0.22	20	46271	70	10	59	1	79
SRP_00024	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	37609	66	11	55	0	87
SRP_00026	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	36784	72	7	65	0	88
SRP_00027	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	37054	74	10	64	0	87
SRP_00030	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	36783	73	14	59	0	88
SRP_00031	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	36244	71	10	61	0	89
SRP_00037	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	36511	74	11	63	0	87
SRP_00086	Metazoa_SRP links to Rfam database...	0.37	0.36	0.38	36	44158	62	1	58	3	64
SRP_00088	Bacteria_large_SRP links to Rfam database...	0.05	0.04	0.06	4	34123	64	3	61	0	85
SRP_00089	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	35711	67	15	52	0	90
SRP_00090	Bacteria_large_SRP links to Rfam database...	0.07	0.07	0.08	6	35434	71	4	67	0	84
SRP_00152	Plant_SRP links to Rfam database...	0.20	0.18	0.21	19	45663	73	7	64	2	84
SRP_00171	Metazoa_SRP links to Rfam database...	0.54	0.55	0.55	48	45363	51	4	36	11	40
SRP_00173	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	38154	73	8	64	1	90
SRP_00174	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	38706	76	10	65	1	86
SRP_00178	Plant_SRP links to Rfam database...	0.00	0.00	0.00	0	45670	83	3	80	0	102
SRP_00181	Plant_SRP links to Rfam database...	0.00	0.00	0.00	0	45970	86	6	80	0	102
SRP_00182	Plant_SRP links to Rfam database...	0.24	0.23	0.26	23	45968	67	5	60	2	78
SRP_00184	Plant_SRP links to Rfam database...	0.19	0.18	0.21	18	45972	70	6	60	4	82
SRP_00234	Bacteria_large_SRP links to Rfam database...	0.07	0.07	0.08	6	36238	71	6	65	0	80
SRP_00308	Bacteria_large_SRP links to Rfam database...	0.07	0.07	0.08	6	36239	70	10	60	0	82
SRP_00317	Metazoa_SRP links to Rfam database...	0.85	0.81	0.89	79	45061	18	1	9	8	19
SRP_00335	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	35205	40	14	26	0	39
SRP_00337	Bacteria_large_SRP links to Rfam database...	0.07	0.07	0.08	6	35432	73	12	61	0	85
SRP_00347	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	46569	96	8	88	0	96
TMR_00038	tmRNA links to Rfam database...	0.30	0.25	0.36	27	71178	52	8	40	4	83
TMR_00046	tmRNA links to Rfam database...	0.08	0.07	0.09	7	62756	76	8	64	4	89
TMR_00048	tmRNA links to Rfam database...	0.16	0.15	0.17	14	64899	73	7	60	6	81
TMR_00458	tmRNA links to Rfam database...	0.16	0.14	0.18	13	63474	65	16	43	6	80
TMR_00568	tmRNA links to Rfam database...	0.08	0.07	0.09	7	60647	74	16	56	2	92

^top

Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.

Table of contents:

Overview

Performance plots

Performance of Afold - scored higher in this pairwise comparison

1. Total counts & total scores for Afold

2. Individual counts for Afold [ download as .csv ]

Performance of RSpredict(20) - scored lower in this pairwise comparison

1. Total counts & total scores for RSpredict(20)

2. Individual counts for RSpredict(20) [ download as .csv ]