CompaRNA - on-line benchmarks of RNA structure prediction methods

Laboratory of Structural Bioinformatics @ Adam Mickiewicz University in Poznan

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Overview

Metric	CentroidAlifold(seed)		IPknot
MCC	0.709	>	0.654
Average MCC ± 95% Confidence Intervals	0.706 ± 0.014	>	0.648 ± 0.016
Sensitivity	0.556	<	0.599
Positive Predictive Value	0.906	>	0.715
Total TP	23695	<	25524
Total TN	24942556	>	24933015
Total FP	3656	<	12316
Total FP CONTRA	331	<	1643
Total FP INCONS	2131	<	8531
Total FP COMP	1194	<	2142
Total FN	18917	>	17088
P-value	3.56938820447e-08

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Performance plots

Comparison of performance of CentroidAlifold(seed) and IPknot. Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data (individual counts for CentroidAlifold(seed) and IPknot).
Average Matthews Correlation Coefficients (MCC) with 95% confidence intervals (CIs) were plotted for different RNA families, for which at least 3 members were present in the benchmarking dataset. 'n' denotes the number of MCCs used to calculate the average and CI. See tables below for raw data (individual counts for CentroidAlifold(seed) and IPknot).
Comparison of average Matthews Correlation Coefficients (MCCs) for CentroidAlifold(seed) and IPknot. The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data (individual counts for CentroidAlifold(seed) and IPknot).

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Performance of CentroidAlifold(seed) - scored higher in this pairwise comparison

1. Total counts & total scores for CentroidAlifold(seed)

Total Base Pair Counts
Total TP	23695
Total TN	24942556
Total FP	3656
Total FP CONTRA	331
Total FP INCONS	2131
Total FP COMP	1194
Total FN	18917

Total Scores
MCC	0.709
Average MCC ± 95% Confidence Intervals	0.706 ± 0.014
Sensitivity	0.556
Positive Predictive Value	0.906
Nr of predictions	426

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2. Individual counts for CentroidAlifold(seed) [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00001	RNaseP_arch links to Rfam database...	0.81	0.65	1.00	49	34142	0	0	0	0	26
ASE_00002	RNaseP_arch links to Rfam database...	0.82	0.67	1.00	49	35462	0	0	0	0	24
ASE_00004	RNaseP_bact_a links to Rfam database...	0.61	0.45	0.83	44	47842	9	0	9	0	53
ASE_00005	RNaseP_bact_a links to Rfam database...	0.75	0.57	0.97	67	57901	2	0	2	0	50
ASE_00006	RNaseP_bact_a links to Rfam database...	0.58	0.44	0.76	41	47532	13	0	13	0	52
ASE_00007	RNaseP_bact_a links to Rfam database...	0.83	0.71	0.98	78	59605	2	0	2	0	32
ASE_00009	RNaseP_arch links to Rfam database...	0.79	0.67	0.94	45	26058	3	0	3	0	22
ASE_00010	RNaseP_bact_b links to Rfam database...	0.86	0.74	0.98	61	49708	12	0	1	11	21
ASE_00012	RNaseP_bact_a links to Rfam database...	0.75	0.59	0.95	73	73843	7	1	3	3	50
ASE_00014	RNaseP_arch links to Rfam database...	0.74	0.58	0.95	61	54221	3	0	3	0	45
ASE_00017	RNaseP_nuc links to Rfam database...	0.79	0.69	0.90	44	50991	5	1	4	0	20
ASE_00018	RNaseP_bact_a links to Rfam database...	0.78	0.60	1.00	81	80520	0	0	0	0	53
ASE_00020	RNaseP_bact_a links to Rfam database...	0.63	0.43	0.93	54	73862	4	3	1	0	72
ASE_00021	RNaseP_bact_a links to Rfam database...	0.63	0.44	0.90	71	104117	11	2	6	3	89
ASE_00022	RNaseP_bact_b links to Rfam database...	0.80	0.65	1.00	80	82948	5	0	0	5	44
ASE_00023	RNaseP_bact_a links to Rfam database...	0.47	0.35	0.63	45	84184	28	8	18	2	82
ASE_00025	RNaseP_nuc links to Rfam database...	0.69	0.58	0.84	41	78557	8	1	7	0	30
ASE_00026	RNaseP_bact_a links to Rfam database...	0.80	0.67	0.96	74	59608	4	0	3	1	36
ASE_00028	RNaseP_bact_b links to Rfam database...	0.80	0.64	1.00	81	84585	3	0	0	3	45
ASE_00029	RNaseP_bact_a links to Rfam database...	0.45	0.34	0.61	41	82961	30	4	22	4	81
ASE_00030	RNaseP_bact_a links to Rfam database...	0.66	0.49	0.90	71	85412	8	0	8	0	74
ASE_00031	RNaseP_bact_a links to Rfam database...	0.51	0.37	0.72	46	86672	18	0	18	0	80
ASE_00032	RNaseP_bact_a links to Rfam database...	0.38	0.27	0.54	32	80141	30	1	26	3	86
ASE_00033	RNaseP_bact_a links to Rfam database...	0.80	0.65	0.99	79	64900	3	1	0	2	42
ASE_00035	RNaseP_bact_a links to Rfam database...	0.77	0.64	0.94	75	70420	8	0	5	3	43
ASE_00036	RNaseP_bact_a links to Rfam database...	0.75	0.58	0.99	76	75778	1	1	0	0	56
ASE_00037	RNaseP_bact_a links to Rfam database...	0.84	0.71	1.00	78	59262	1	0	0	1	32
ASE_00038	RNaseP_bact_a links to Rfam database...	0.74	0.54	1.00	55	53573	0	0	0	0	46
ASE_00040	RNaseP_bact_a links to Rfam database...	0.77	0.59	1.00	79	78924	2	0	0	2	54
ASE_00041	RNaseP_bact_a links to Rfam database...	0.77	0.64	0.92	69	57555	6	0	6	0	39
ASE_00042	RNaseP_bact_a links to Rfam database...	0.65	0.49	0.87	71	90018	11	0	11	0	74
ASE_00044	RNaseP_bact_a links to Rfam database...	0.83	0.70	1.00	73	54542	0	0	0	0	32
ASE_00045	RNaseP_bact_b links to Rfam database...	0.85	0.76	0.94	61	47213	9	0	4	5	19
ASE_00046	RNaseP_bact_a links to Rfam database...	0.73	0.62	0.86	64	50329	10	0	10	0	39
ASE_00047	RNaseP_bact_a links to Rfam database...	0.70	0.52	0.93	68	74232	5	0	5	0	62
ASE_00052	RNaseP_bact_a links to Rfam database...	0.75	0.63	0.91	70	61348	8	0	7	1	42
ASE_00053	RNaseP_bact_a links to Rfam database...	0.71	0.54	0.92	72	79323	6	3	3	0	61
ASE_00057	RNaseP_bact_a links to Rfam database...	0.73	0.57	0.93	77	82132	6	2	4	0	57
ASE_00064	RNaseP_bact_a links to Rfam database...	0.77	0.60	1.00	53	45398	0	0	0	0	36
ASE_00066	RNaseP_bact_a links to Rfam database...	0.75	0.56	1.00	73	72317	1	0	0	1	57
ASE_00068	RNaseP_bact_a links to Rfam database...	0.54	0.38	0.78	32	37634	9	0	9	0	53
ASE_00069	RNaseP_bact_a links to Rfam database...	0.75	0.57	0.98	80	82946	3	0	2	1	60
ASE_00074	RNaseP_bact_a links to Rfam database...	0.83	0.69	1.00	82	67814	1	0	0	1	37
ASE_00075	RNaseP_bact_a links to Rfam database...	0.64	0.44	0.92	71	108734	11	1	5	5	91
ASE_00076	RNaseP_bact_a links to Rfam database...	0.69	0.48	1.00	57	68208	0	0	0	0	61
ASE_00077	RNaseP_bact_a links to Rfam database...	0.79	0.64	0.96	55	45093	2	1	1	0	31
ASE_00078	RNaseP_bact_a links to Rfam database...	0.83	0.69	1.00	57	43014	0	0	0	0	26
ASE_00079	RNaseP_bact_a links to Rfam database...	0.63	0.47	0.84	47	55555	9	0	9	0	53
ASE_00080	RNaseP_bact_a links to Rfam database...	0.45	0.30	0.66	37	71575	19	1	18	0	86
ASE_00081	RNaseP_bact_a links to Rfam database...	0.77	0.59	1.00	57	49713	0	0	0	0	40
ASE_00082	RNaseP_bact_a links to Rfam database...	0.66	0.43	1.00	50	70450	6	0	0	6	66
ASE_00083	RNaseP_bact_a links to Rfam database...	0.72	0.52	1.00	57	62424	0	0	0	0	53
ASE_00084	RNaseP_bact_a links to Rfam database...	0.75	0.57	0.98	56	53571	1	1	0	0	43
ASE_00087	RNaseP_bact_a links to Rfam database...	0.60	0.38	0.95	54	88353	3	0	3	0	90
ASE_00090	RNaseP_bact_a links to Rfam database...	0.75	0.56	1.00	57	55554	0	0	0	0	44
ASE_00092	RNaseP_bact_a links to Rfam database...	0.70	0.50	0.98	56	63489	1	1	0	0	57
ASE_00096	RNaseP_bact_a links to Rfam database...	0.63	0.44	0.89	51	63489	6	0	6	0	64
ASE_00099	RNaseP_bact_a links to Rfam database...	0.82	0.67	1.00	80	64540	0	0	0	0	40
ASE_00100	RNaseP_nuc links to Rfam database...	0.72	0.58	0.90	44	82166	5	1	4	0	32
ASE_00102	RNaseP_bact_a links to Rfam database...	0.57	0.40	0.81	66	117774	15	1	14	0	100
ASE_00104	RNaseP_bact_a links to Rfam database...	0.81	0.67	0.99	80	64180	1	0	1	0	39
ASE_00105	RNaseP_bact_a links to Rfam database...	0.55	0.40	0.76	44	64203	14	4	10	0	67
ASE_00107	RNaseP_bact_a links to Rfam database...	0.78	0.63	0.96	80	73070	3	0	3	0	47
ASE_00108	RNaseP_nuc links to Rfam database...	0.79	0.70	0.90	44	46922	5	1	4	0	19
ASE_00111	RNaseP_nuc links to Rfam database...	0.83	0.74	0.93	42	50041	3	1	2	0	15
ASE_00112	RNaseP_bact_a links to Rfam database...	0.50	0.34	0.71	40	75410	16	0	16	0	76
ASE_00114	RNaseP_bact_b links to Rfam database...	0.69	0.62	0.76	48	45388	20	0	15	5	29
ASE_00115	RNaseP_bact_a links to Rfam database...	0.74	0.54	1.00	55	54560	0	0	0	0	46
ASE_00116	RNaseP_arch links to Rfam database...	0.86	0.76	0.98	50	31575	1	0	1	0	16
ASE_00118	RNaseP_bact_a links to Rfam database...	0.68	0.49	0.94	50	60673	4	1	2	1	52
ASE_00119	RNaseP_bact_a links to Rfam database...	0.66	0.44	0.98	48	62786	1	1	0	0	60
ASE_00120	RNaseP_arch links to Rfam database...	0.79	0.64	0.98	60	46910	2	0	1	1	34
ASE_00121	RNaseP_arch links to Rfam database...	0.81	0.66	0.98	61	45088	1	0	1	0	31
ASE_00122	RNaseP_bact_a links to Rfam database...	0.80	0.64	1.00	56	43309	1	0	0	1	32
ASE_00123	RNaseP_bact_a links to Rfam database...	0.68	0.48	0.95	41	38460	2	0	2	0	44
ASE_00125	RNaseP_bact_a links to Rfam database...	0.67	0.47	0.95	41	39297	2	0	2	0	47
ASE_00128	RNaseP_bact_a links to Rfam database...	0.73	0.54	1.00	54	53247	0	0	0	0	46
ASE_00129	RNaseP_bact_a links to Rfam database...	0.71	0.50	1.00	56	62779	0	0	0	0	55
ASE_00131	RNaseP_bact_a links to Rfam database...	0.65	0.44	0.97	37	39302	1	1	0	0	48
ASE_00132	RNaseP_bact_a links to Rfam database...	0.76	0.59	0.98	56	50346	1	1	0	0	39
ASE_00134	RNaseP_bact_a links to Rfam database...	0.69	0.54	0.89	51	50346	6	0	6	0	44
ASE_00135	RNaseP_bact_a links to Rfam database...	0.53	0.39	0.74	42	63133	15	0	15	0	67
ASE_00136	RNaseP_bact_a links to Rfam database...	0.75	0.59	0.95	54	48148	3	0	3	0	38
ASE_00137	RNaseP_bact_a links to Rfam database...	0.70	0.53	0.93	52	48460	4	0	4	0	46
ASE_00138	RNaseP_bact_a links to Rfam database...	0.79	0.63	1.00	51	40419	0	0	0	0	30
ASE_00139	RNaseP_bact_a links to Rfam database...	0.73	0.54	1.00	56	54229	0	0	0	0	48
ASE_00140	RNaseP_bact_a links to Rfam database...	0.64	0.43	0.95	54	70819	3	3	0	0	71
ASE_00142	RNaseP_bact_a links to Rfam database...	0.77	0.61	0.97	75	67084	4	0	2	2	47
ASE_00145	RNaseP_arch links to Rfam database...	0.77	0.59	1.00	66	70059	0	0	0	0	45
ASE_00146	RNaseP_bact_a links to Rfam database...	0.78	0.62	0.97	77	70797	2	0	2	0	47
ASE_00148	RNaseP_arch links to Rfam database...	0.62	0.41	0.95	63	112509	3	0	3	0	91
ASE_00151	RNaseP_bact_a links to Rfam database...	0.80	0.70	0.92	69	51928	6	5	1	0	29
ASE_00153	RNaseP_nuc links to Rfam database...	0.67	0.53	0.85	39	57584	7	1	6	0	34
ASE_00154	RNaseP_arch links to Rfam database...	0.75	0.59	0.95	63	65275	3	0	3	0	44
ASE_00155	RNaseP_arch links to Rfam database...	0.68	0.46	1.00	66	93462	0	0	0	0	76
ASE_00161	RNaseP_bact_b links to Rfam database...	0.86	0.78	0.94	68	53556	8	0	4	4	19
ASE_00163	RNaseP_bact_a links to Rfam database...	0.77	0.59	1.00	55	53246	0	0	0	0	38
ASE_00165	RNaseP_bact_a links to Rfam database...	0.69	0.50	0.94	51	52921	4	1	2	1	50
ASE_00168	RNaseP_nuc links to Rfam database...	0.79	0.69	0.90	44	60677	5	1	4	0	20
ASE_00169	RNaseP_bact_a links to Rfam database...	0.65	0.48	0.88	51	57233	7	1	6	0	56
ASE_00170	RNaseP_bact_a links to Rfam database...	0.78	0.60	1.00	56	48772	0	0	0	0	37
ASE_00171	RNaseP_bact_a links to Rfam database...	0.76	0.59	1.00	55	48461	1	0	0	1	39
ASE_00172	RNaseP_bact_a links to Rfam database...	0.72	0.53	0.98	56	58939	1	1	0	0	50
ASE_00174	RNaseP_bact_a links to Rfam database...	0.60	0.43	0.82	47	61018	10	1	9	0	62
ASE_00175	RNaseP_bact_a links to Rfam database...	0.71	0.51	0.98	55	59975	1	1	0	0	52
ASE_00176	RNaseP_bact_a links to Rfam database...	0.71	0.50	1.00	55	59976	0	0	0	0	55
ASE_00179	RNaseP_bact_a links to Rfam database...	0.79	0.63	0.98	53	44199	2	0	1	1	31
ASE_00180	RNaseP_bact_a links to Rfam database...	0.73	0.54	0.98	54	51305	1	1	0	0	46
ASE_00181	RNaseP_bact_a links to Rfam database...	0.71	0.52	0.96	55	57573	3	2	0	1	51
ASE_00182	RNaseP_bact_a links to Rfam database...	0.61	0.40	0.95	54	84198	3	0	3	0	82
ASE_00184	RNaseP_bact_a links to Rfam database...	0.75	0.56	1.00	57	54558	0	0	0	0	45
ASE_00185	RNaseP_bact_a links to Rfam database...	0.64	0.41	0.98	53	73482	1	1	0	0	75
ASE_00186	RNaseP_bact_a links to Rfam database...	0.66	0.51	0.86	67	78925	14	0	11	3	65
ASE_00187	RNaseP_arch links to Rfam database...	0.69	0.51	0.92	59	68571	5	1	4	0	56
ASE_00189	RNaseP_bact_b links to Rfam database...	0.76	0.62	0.94	63	63123	8	0	4	4	39
ASE_00190	RNaseP_bact_b links to Rfam database...	0.74	0.54	1.00	49	45402	3	0	0	3	41
ASE_00191	RNaseP_arch links to Rfam database...	0.90	0.82	0.98	50	29595	1	0	1	0	11
ASE_00192	RNaseP_bact_b links to Rfam database...	0.51	0.35	0.75	47	84603	20	0	16	4	86
ASE_00194	RNaseP_bact_b links to Rfam database...	0.72	0.53	0.97	63	73471	7	0	2	5	56
ASE_00196	RNaseP_arch links to Rfam database...	0.82	0.69	0.96	52	31572	2	0	2	0	23
ASE_00197	RNaseP_bact_a links to Rfam database...	0.63	0.46	0.86	67	89175	12	0	11	1	78
ASE_00203	RNaseP_bact_a links to Rfam database...	0.72	0.55	0.93	53	46608	4	2	2	0	43
ASE_00204	RNaseP_bact_b links to Rfam database...	0.73	0.55	0.97	62	67832	7	1	1	5	50
ASE_00205	RNaseP_arch links to Rfam database...	0.82	0.67	1.00	60	45996	1	0	0	1	30
ASE_00209	RNaseP_arch links to Rfam database...	0.83	0.69	0.98	61	43009	1	0	1	0	27
ASE_00210	RNaseP_arch links to Rfam database...	0.74	0.65	0.86	42	27212	9	0	7	2	23
ASE_00212	RNaseP_bact_a links to Rfam database...	0.63	0.45	0.89	66	93887	9	0	8	1	82
ASE_00213	RNaseP_arch links to Rfam database...	0.83	0.71	0.98	47	27213	3	0	1	2	19
ASE_00214	RNaseP_bact_a links to Rfam database...	0.73	0.54	0.98	56	56223	2	1	0	1	47
ASE_00215	RNaseP_bact_a links to Rfam database...	0.51	0.32	0.82	32	48477	7	0	7	0	67
ASE_00216	RNaseP_bact_a links to Rfam database...	0.81	0.66	1.00	54	39286	0	0	0	0	28
ASE_00217	RNaseP_bact_a links to Rfam database...	0.82	0.67	1.00	60	40410	1	0	0	1	30
ASE_00221	RNaseP_bact_a links to Rfam database...	0.83	0.70	0.99	82	64537	1	0	1	0	35
ASE_00222	RNaseP_arch links to Rfam database...	0.65	0.42	1.00	66	112035	0	0	0	0	91
ASE_00227	RNaseP_bact_a links to Rfam database...	0.57	0.43	0.76	57	78928	18	0	18	0	76
ASE_00228	RNaseP_bact_a links to Rfam database...	0.72	0.57	0.91	49	46917	6	3	2	1	37
ASE_00229	RNaseP_bact_a links to Rfam database...	0.78	0.61	1.00	53	42433	2	0	0	2	34
ASE_00231	RNaseP_bact_a links to Rfam database...	0.59	0.45	0.78	43	47840	12	0	12	0	53
ASE_00232	RNaseP_bact_a links to Rfam database...	0.81	0.65	1.00	55	38448	0	0	0	0	29
ASE_00234	RNaseP_bact_a links to Rfam database...	0.64	0.43	0.95	55	75408	3	3	0	0	74
ASE_00237	RNaseP_nuc links to Rfam database...	0.83	0.73	0.93	41	45709	3	1	2	0	15
ASE_00238	RNaseP_bact_a links to Rfam database...	0.61	0.44	0.86	50	64203	8	2	6	0	64
ASE_00240	RNaseP_bact_a links to Rfam database...	0.62	0.48	0.79	45	46608	12	0	12	0	48
ASE_00241	RNaseP_bact_a links to Rfam database...	0.79	0.64	0.98	56	43899	1	0	1	0	31
ASE_00242	RNaseP_bact_a links to Rfam database...	0.85	0.72	1.00	81	60994	1	0	0	1	31
ASE_00245	RNaseP_nuc links to Rfam database...	0.54	0.38	0.75	30	55238	12	0	10	2	48
ASE_00246	RNaseP_nuc links to Rfam database...	0.79	0.67	0.92	45	48156	4	1	3	0	22
ASE_00247	RNaseP_nuc links to Rfam database...	0.79	0.69	0.90	44	54236	5	1	4	0	20
ASE_00248	RNaseP_bact_a links to Rfam database...	0.84	0.71	1.00	81	62400	1	0	0	1	33
ASE_00250	RNaseP_bact_a links to Rfam database...	0.72	0.56	0.91	74	78922	8	1	6	1	57
ASE_00252	RNaseP_bact_a links to Rfam database...	0.63	0.43	0.92	72	115362	10	2	4	4	96
ASE_00254	RNaseP_bact_a links to Rfam database...	0.81	0.66	1.00	54	36802	0	0	0	0	28
ASE_00255	RNaseP_bact_a links to Rfam database...	0.64	0.51	0.80	66	74609	16	0	16	0	64
ASE_00257	RNaseP_bact_a links to Rfam database...	0.68	0.52	0.91	50	50985	5	1	4	0	47
ASE_00258	RNaseP_nuc links to Rfam database...	0.79	0.63	1.00	34	26762	2	0	0	2	20
ASE_00263	RNaseP_bact_a links to Rfam database...	0.68	0.47	0.98	56	70443	1	1	0	0	64
ASE_00264	RNaseP_nuc links to Rfam database...	0.58	0.40	0.85	40	49094	8	0	7	1	60
ASE_00267	RNaseP_bact_a links to Rfam database...	0.80	0.64	1.00	56	45094	0	0	0	0	32
ASE_00270	RNaseP_bact_a links to Rfam database...	0.55	0.34	0.90	43	72342	6	0	5	1	85
ASE_00274	RNaseP_bact_a links to Rfam database...	0.71	0.53	0.95	55	55553	3	3	0	0	48
ASE_00277	RNaseP_bact_a links to Rfam database...	0.73	0.57	0.93	52	48149	4	3	1	0	39
ASE_00279	RNaseP_bact_a links to Rfam database...	0.73	0.54	0.98	55	53245	1	0	1	0	46
ASE_00280	RNaseP_bact_a links to Rfam database...	0.74	0.57	0.97	56	51945	2	1	1	0	42
ASE_00281	RNaseP_bact_a links to Rfam database...	0.78	0.63	0.98	55	44495	1	0	1	0	33
ASE_00282	RNaseP_bact_a links to Rfam database...	0.66	0.45	0.98	57	77757	1	1	0	0	70
ASE_00283	RNaseP_bact_a links to Rfam database...	0.72	0.52	0.98	56	61719	1	0	1	0	51
ASE_00284	RNaseP_bact_a links to Rfam database...	0.72	0.53	0.98	57	58253	1	1	0	0	51
ASE_00285	RNaseP_bact_a links to Rfam database...	0.68	0.47	1.00	57	68949	0	0	0	0	65
ASE_00286	RNaseP_bact_a links to Rfam database...	0.78	0.61	1.00	56	46609	0	0	0	0	36
ASE_00287	RNaseP_bact_a links to Rfam database...	0.67	0.50	0.89	51	54889	6	0	6	0	52
ASE_00288	RNaseP_bact_a links to Rfam database...	0.75	0.58	0.96	54	46000	2	2	0	0	39
ASE_00289	RNaseP_bact_a links to Rfam database...	0.66	0.46	0.95	73	100948	4	0	4	0	84
ASE_00292	RNaseP_bact_a links to Rfam database...	0.76	0.58	1.00	80	81730	1	0	0	1	58
ASE_00294	RNaseP_bact_a links to Rfam database...	0.68	0.47	0.98	81	114398	2	0	2	0	90
ASE_00295	RNaseP_bact_a links to Rfam database...	0.77	0.59	1.00	77	73843	0	0	0	0	54
ASE_00296	RNaseP_bact_a links to Rfam database...	0.73	0.54	0.98	79	91725	3	0	2	1	66
ASE_00297	RNaseP_bact_a links to Rfam database...	0.61	0.45	0.83	44	52922	9	2	7	0	54
ASE_00298	RNaseP_bact_a links to Rfam database...	0.70	0.50	0.98	56	67471	1	1	0	0	57
ASE_00299	RNaseP_bact_a links to Rfam database...	0.55	0.44	0.70	44	49392	19	0	19	0	56
ASE_00303	RNaseP_nuc links to Rfam database...	0.40	0.26	0.60	25	67854	22	0	17	5	70
ASE_00305	RNaseP_bact_b links to Rfam database...	0.87	0.79	0.96	67	54545	8	0	3	5	18
ASE_00313	RNaseP_nuc links to Rfam database...	0.50	0.34	0.75	30	62441	14	2	8	4	59
ASE_00316	RNaseP_nuc links to Rfam database...	0.46	0.27	0.79	26	107847	8	0	7	1	72
ASE_00318	RNaseP_bact_b links to Rfam database...	0.79	0.62	1.00	73	80127	6	0	0	6	45
ASE_00321	RNaseP_bact_b links to Rfam database...	0.89	0.80	1.00	70	54545	5	0	0	5	18
ASE_00327	RNaseP_nuc links to Rfam database...	0.61	0.43	0.86	38	57247	11	0	6	5	51
ASE_00328	RNaseP_bact_b links to Rfam database...	0.83	0.70	1.00	78	72693	5	0	0	5	34
ASE_00329	RNaseP_nuc links to Rfam database...	0.59	0.41	0.84	26	40724	17	0	5	12	37
ASE_00330	RNaseP_nuc links to Rfam database...	0.66	0.48	0.91	43	56233	5	0	4	1	47
ASE_00332	RNaseP_bact_a links to Rfam database...	0.78	0.60	1.00	83	81727	0	0	0	0	55
ASE_00335	RNaseP_bact_b links to Rfam database...	0.81	0.66	1.00	77	75389	7	0	0	7	39
ASE_00337	RNaseP_nuc links to Rfam database...	0.57	0.44	0.76	31	39299	18	0	10	8	40
ASE_00338	RNaseP_nuc links to Rfam database...	0.51	0.33	0.80	32	66390	8	0	8	0	66
ASE_00339	RNaseP_bact_a links to Rfam database...	0.58	0.46	0.72	55	80124	22	7	14	1	64
ASE_00340	RNaseP_bact_a links to Rfam database...	0.73	0.56	0.94	48	46005	7	0	3	4	37
ASE_00342	RNaseP_bact_a links to Rfam database...	0.84	0.71	1.00	82	62399	0	0	0	0	33
ASE_00343	RNaseP_bact_a links to Rfam database...	0.37	0.27	0.51	31	83375	32	2	28	2	82
ASE_00346	RNaseP_arch links to Rfam database...	0.61	0.49	0.75	48	48141	16	0	16	0	49
ASE_00353	RNaseP_bact_a links to Rfam database...	0.72	0.52	0.98	56	57913	2	1	0	1	51
ASE_00359	RNaseP_arch links to Rfam database...	0.77	0.61	0.98	49	42728	2	0	1	1	31
ASE_00360	RNaseP_arch links to Rfam database...	0.87	0.77	0.98	50	29352	1	0	1	0	15
ASE_00361	RNaseP_bact_a links to Rfam database...	0.65	0.43	0.98	55	75410	1	1	0	0	72
ASE_00362	RNaseP_bact_a links to Rfam database...	0.78	0.62	1.00	56	48149	1	0	0	1	35
ASE_00363	RNaseP_bact_a links to Rfam database...	0.70	0.54	0.89	51	51303	6	0	6	0	43
ASE_00364	RNaseP_bact_a links to Rfam database...	0.66	0.49	0.89	51	54228	6	1	5	0	54
ASE_00366	RNaseP_bact_a links to Rfam database...	0.69	0.53	0.90	52	58595	6	2	4	0	46
ASE_00367	RNaseP_bact_a links to Rfam database...	0.81	0.65	1.00	56	43015	1	0	0	1	30
ASE_00369	RNaseP_bact_a links to Rfam database...	0.73	0.53	1.00	57	55888	0	0	0	0	50
ASE_00370	RNaseP_bact_a links to Rfam database...	0.78	0.62	0.98	52	41852	1	0	1	0	32
ASE_00372	RNaseP_bact_a links to Rfam database...	0.73	0.54	0.98	54	51948	1	0	1	0	46
ASE_00374	RNaseP_bact_a links to Rfam database...	0.78	0.60	1.00	53	44797	0	0	0	0	35
ASE_00375	RNaseP_bact_a links to Rfam database...	0.71	0.51	1.00	56	60322	1	0	0	1	54
ASE_00376	RNaseP_bact_a links to Rfam database...	0.68	0.50	0.93	53	56896	4	0	4	0	52
ASE_00377	RNaseP_bact_a links to Rfam database...	0.67	0.50	0.91	53	57572	5	1	4	0	54
ASE_00379	RNaseP_bact_a links to Rfam database...	0.79	0.63	1.00	56	46000	1	0	0	1	33
ASE_00380	RNaseP_bact_a links to Rfam database...	0.75	0.57	1.00	56	54890	0	0	0	0	43
ASE_00382	RNaseP_bact_a links to Rfam database...	0.80	0.64	1.00	54	41851	1	0	0	1	30
ASE_00383	RNaseP_bact_a links to Rfam database...	0.74	0.54	1.00	57	54558	0	0	0	0	48
ASE_00384	RNaseP_bact_a links to Rfam database...	0.78	0.61	1.00	56	48460	0	0	0	0	36
ASE_00385	RNaseP_bact_a links to Rfam database...	0.71	0.56	0.90	45	41855	5	0	5	0	36
ASE_00386	RNaseP_bact_a links to Rfam database...	0.77	0.59	1.00	57	50346	0	0	0	0	39
ASE_00387	RNaseP_bact_a links to Rfam database...	0.63	0.46	0.87	48	55890	7	0	7	0	56
ASE_00388	RNaseP_bact_a links to Rfam database...	0.77	0.60	1.00	53	45700	1	0	0	1	36
ASE_00390	RNaseP_bact_a links to Rfam database...	0.78	0.62	0.98	53	42141	1	0	1	0	32
ASE_00393	RNaseP_bact_a links to Rfam database...	0.71	0.56	0.91	52	47838	5	0	5	0	41
ASE_00394	RNaseP_bact_a links to Rfam database...	0.76	0.58	1.00	54	46917	0	0	0	0	39
ASE_00395	RNaseP_bact_a links to Rfam database...	0.80	0.64	1.00	54	41562	0	0	0	0	30
ASE_00396	RNaseP_bact_a links to Rfam database...	0.81	0.65	1.00	54	41562	0	0	0	0	29
ASE_00397	RNaseP_bact_a links to Rfam database...	0.74	0.54	1.00	57	54558	0	0	0	0	48
ASE_00398	RNaseP_bact_a links to Rfam database...	0.72	0.52	1.00	54	55891	0	0	0	0	50
ASE_00400	RNaseP_bact_a links to Rfam database...	0.72	0.52	1.00	55	57915	1	0	0	1	51
ASE_00401	RNaseP_bact_a links to Rfam database...	0.62	0.40	0.96	50	76976	2	1	1	0	76
ASE_00402	RNaseP_bact_a links to Rfam database...	0.80	0.65	1.00	55	42431	0	0	0	0	30
ASE_00403	RNaseP_bact_a links to Rfam database...	0.73	0.53	1.00	57	55888	0	0	0	0	50
ASE_00404	RNaseP_bact_a links to Rfam database...	0.80	0.65	1.00	55	43016	1	0	0	1	30
ASE_00406	RNaseP_bact_a links to Rfam database...	0.78	0.61	1.00	57	48771	0	0	0	0	37
ASE_00411	RNaseP_bact_a links to Rfam database...	0.67	0.55	0.82	49	49395	11	5	6	0	40
ASE_00412	RNaseP_bact_a links to Rfam database...	0.63	0.47	0.84	49	58253	9	2	7	0	56
ASE_00413	RNaseP_bact_a links to Rfam database...	0.72	0.57	0.90	46	44500	7	2	3	2	35
ASE_00414	RNaseP_bact_a links to Rfam database...	0.58	0.44	0.76	42	46305	13	3	10	0	53
ASE_00415	RNaseP_bact_a links to Rfam database...	0.57	0.40	0.80	41	54895	10	0	10	0	62
ASE_00416	RNaseP_bact_a links to Rfam database...	0.76	0.61	0.94	78	77338	5	1	4	0	49
ASE_00417	RNaseP_arch links to Rfam database...	0.80	0.65	0.98	65	54549	1	0	1	0	35
ASE_00418	RNaseP_arch links to Rfam database...	0.81	0.67	0.98	50	38730	1	0	1	0	25
ASE_00419	RNaseP_bact_a links to Rfam database...	0.67	0.50	0.89	51	54889	6	2	4	0	52
ASE_00420	RNaseP_nuc links to Rfam database...	0.80	0.63	1.00	40	43325	0	0	0	0	23
ASE_00422	RNaseP_bact_a links to Rfam database...	0.74	0.57	0.96	54	46915	3	0	2	1	40
ASE_00423	RNaseP_bact_a links to Rfam database...	0.77	0.64	0.93	70	56878	6	0	5	1	39
ASE_00426	RNaseP_bact_a links to Rfam database...	0.52	0.41	0.68	44	61010	22	5	16	1	64
ASE_00427	RNaseP_nuc links to Rfam database...	0.86	0.74	1.00	34	40721	0	0	0	0	12
ASE_00428	RNaseP_bact_a links to Rfam database...	0.77	0.62	0.94	78	76553	5	1	4	0	47
ASE_00430	RNaseP_bact_a links to Rfam database...	0.73	0.55	0.98	53	46917	1	0	1	0	44
ASE_00431	RNaseP_bact_a links to Rfam database...	0.56	0.44	0.71	42	46301	17	7	10	0	53
ASE_00434	RNaseP_bact_b links to Rfam database...	0.74	0.61	0.89	67	68190	14	0	8	6	43
ASE_00437	RNaseP_bact_a links to Rfam database...	0.52	0.40	0.67	54	79320	27	0	27	0	81
ASE_00438	RNaseP_bact_a links to Rfam database...	0.62	0.42	0.92	49	66013	4	1	3	0	67
ASE_00441	RNaseP_bact_a links to Rfam database...	0.65	0.44	0.96	49	64210	3	0	2	1	63
ASE_00443	RNaseP_nuc links to Rfam database...	0.63	0.46	0.85	23	26769	18	2	2	14	27
ASE_00447	RNaseP_bact_a links to Rfam database...	0.84	0.71	1.00	82	60296	0	0	0	0	34
ASE_00448	RNaseP_bact_a links to Rfam database...	0.81	0.69	0.95	77	64180	4	0	4	0	35
ASE_00451	RNaseP_bact_a links to Rfam database...	0.79	0.64	0.96	80	70793	3	0	3	0	45
ASE_00454	RNaseP_nuc links to Rfam database...	0.65	0.49	0.86	31	43329	5	0	5	0	32
CRW_00013	Intron_gpI links to Rfam database...	0.37	0.21	0.65	24	103703	17	1	12	4	91
CRW_00016	Intron_gpI links to Rfam database...	0.36	0.20	0.65	24	77384	16	1	12	3	96
CRW_00610	Intron_gpI links to Rfam database...	0.51	0.33	0.77	27	36280	11	1	7	3	54
CRW_00613	Intron_gpI links to Rfam database...	0.48	0.32	0.71	25	34945	14	0	10	4	53
CRW_00614	Intron_gpI links to Rfam database...	0.43	0.30	0.63	17	121744	16	2	8	6	40
CRW_00618	Intron_gpI links to Rfam database...	0.41	0.28	0.61	17	56252	12	3	8	1	44
CRW_00619	Intron_gpI links to Rfam database...	0.53	0.30	0.92	22	165001	5	0	2	3	51
CRW_00620	Intron_gpI links to Rfam database...	0.44	0.29	0.69	18	150949	18	0	8	10	45
CRW_00621	Intron_gpI links to Rfam database...	0.40	0.27	0.61	19	153150	14	3	9	2	52
CRW_00623	Intron_gpI links to Rfam database...	0.49	0.29	0.83	24	129766	9	1	4	4	59
CRW_00633	Intron_gpI links to Rfam database...	0.31	0.17	0.58	18	63515	14	2	11	1	88
CRW_00634	Intron_gpI links to Rfam database...	0.35	0.20	0.61	19	64589	20	1	11	8	75
CRW_00670	Intron_gpI links to Rfam database...	0.49	0.28	0.89	33	70088	8	0	4	4	87
CRW_00671	Intron_gpI links to Rfam database...	0.50	0.28	0.89	33	62798	8	0	4	4	84
CRW_00672	Intron_gpI links to Rfam database...	0.51	0.30	0.89	33	72353	8	0	4	4	78
CRW_00674	Intron_gpI links to Rfam database...	0.29	0.16	0.54	20	83399	20	6	11	3	104
CRW_00676	Intron_gpI links to Rfam database...	0.35	0.17	0.69	20	93499	20	0	9	11	95
CRW_00692	Intron_gpI links to Rfam database...	0.39	0.22	0.69	20	68606	20	0	9	11	70
PDB_00827	Intron_gpI links to Rfam database...	0.58	0.40	0.84	32	26990	6	1	5	0	49
PDB_00919	RNaseP_bact_a links to Rfam database...	0.49	0.35	0.69	36	44201	18	0	16	2	67
RFA_00597	Telomerase-vert links to Rfam database...	0.73	0.64	0.83	70	97819	19	0	14	5	39
RFA_00598	Telomerase-vert links to Rfam database...	0.72	0.63	0.81	64	84587	26	0	15	11	37
RFA_00599	Telomerase-vert links to Rfam database...	0.85	0.73	0.99	81	101393	4	0	1	3	30
RFA_00600	Telomerase-vert links to Rfam database...	0.79	0.68	0.92	68	120221	15	0	6	9	32
RFA_00601	Telomerase-vert links to Rfam database...	0.82	0.71	0.95	81	99150	9	0	4	5	33
RFA_00602	Telomerase-vert links to Rfam database...	0.81	0.71	0.93	82	101387	10	0	6	4	34
RFA_00606	Telomerase-cil links to Rfam database...	0.91	0.82	1.00	32	21289	0	0	0	0	7
RFA_00620	Telomerase-cil links to Rfam database...	0.91	0.82	1.00	32	21913	0	0	0	0	7
RFA_00621	RNase_MRP links to Rfam database...	0.41	0.30	0.56	23	46319	19	2	16	1	53
RFA_00623	RNase_MRP links to Rfam database...	0.45	0.29	0.70	23	43923	11	1	9	1	55
RFA_00624	RNase_MRP links to Rfam database...	0.68	0.61	0.77	37	30087	11	0	11	0	24
RFA_00626	rne5 links to Rfam database...	0.98	0.95	1.00	83	56533	8	0	0	8	4
RFA_00627	rne5 links to Rfam database...	0.98	0.97	1.00	84	56869	10	0	0	10	3
RFA_00628	rne5 links to Rfam database...	0.98	0.95	1.00	82	57209	12	0	0	12	4
RFA_00630	rne5 links to Rfam database...	0.93	0.90	0.96	78	56872	16	0	3	13	9
RFA_00639	7SK links to Rfam database...	0.67	0.48	0.93	42	54570	3	0	3	0	45
RFA_00805	RNAIII links to Rfam database...	0.64	0.41	1.00	61	133325	1	0	0	1	89
RFA_00814	R2_retro_el links to Rfam database...	0.91	0.83	1.00	34	25166	1	0	0	1	7
RFA_00815	R2_retro_el links to Rfam database...	0.94	0.88	1.00	36	24495	1	0	0	1	5
RFA_00816	R2_retro_el links to Rfam database...	0.94	0.88	1.00	36	23184	1	0	0	1	5
RFA_00817	R2_retro_el links to Rfam database...	0.92	0.85	1.00	35	21910	1	0	0	1	6
RFA_00818	R2_retro_el links to Rfam database...	0.94	0.88	1.00	36	20265	1	0	0	1	5
RFA_00819	R2_retro_el links to Rfam database...	0.94	0.88	1.00	36	27930	1	0	0	1	5
RFA_00820	bicoid_3 links to Rfam database...	0.90	0.83	0.99	133	151390	14	0	2	12	27
RFA_00830	bicoid_3 links to Rfam database...	0.76	0.68	0.84	105	152503	32	1	19	12	49
SRP_00002	Metazoa_SRP links to Rfam database...	0.91	0.83	0.99	85	45064	6	0	1	5	17
SRP_00006	Metazoa_SRP links to Rfam database...	0.91	0.82	1.00	83	45670	7	0	0	7	18
SRP_00009	Plant_SRP links to Rfam database...	0.85	0.77	0.94	79	46581	13	0	5	8	23
SRP_00011	Plant_SRP links to Rfam database...	0.81	0.74	0.89	77	46273	15	0	10	5	27
SRP_00012	Plant_SRP links to Rfam database...	0.85	0.78	0.93	79	46275	14	0	6	8	22
SRP_00015	Plant_SRP links to Rfam database...	0.82	0.75	0.89	74	46277	19	0	9	10	25
SRP_00016	Archaea_SRP links to Rfam database...	0.89	0.81	0.98	88	47805	6	0	2	4	21
SRP_00018	Fungi_SRP links to Rfam database...	0.70	0.58	0.84	47	38447	14	2	7	5	34
SRP_00019	Fungi_SRP links to Rfam database...	0.69	0.51	0.94	46	35997	8	1	2	5	45
SRP_00024	Bacteria_large_SRP links to Rfam database...	0.56	0.31	1.00	27	37648	4	0	0	4	60
SRP_00026	Bacteria_large_SRP links to Rfam database...	0.55	0.31	1.00	27	36829	4	0	0	4	61
SRP_00027	Bacteria_large_SRP links to Rfam database...	0.57	0.32	1.00	28	37100	4	0	0	4	59
SRP_00030	Bacteria_large_SRP links to Rfam database...	0.55	0.31	1.00	27	36829	4	0	0	4	61
SRP_00031	Bacteria_large_SRP links to Rfam database...	0.54	0.29	1.00	26	36289	5	0	0	5	63
SRP_00037	Bacteria_large_SRP links to Rfam database...	0.56	0.31	1.00	27	36558	4	0	0	4	60
SRP_00050	Metazoa_SRP links to Rfam database...	0.94	0.88	1.00	87	44763	5	0	0	5	12
SRP_00053	Metazoa_SRP links to Rfam database...	0.89	0.84	0.94	79	45066	13	0	5	8	15
SRP_00060	Metazoa_SRP links to Rfam database...	0.93	0.86	1.00	86	44465	5	0	0	5	14
SRP_00061	Metazoa_SRP links to Rfam database...	0.92	0.85	1.00	85	44765	6	0	0	6	15
SRP_00066	Metazoa_SRP links to Rfam database...	0.91	0.82	1.00	82	45369	10	0	0	10	18
SRP_00069	Fungi_SRP links to Rfam database...	0.62	0.49	0.78	42	34399	16	2	10	4	43
SRP_00070	Fungi_SRP links to Rfam database...	0.59	0.40	0.87	48	126701	14	0	7	7	73
SRP_00073	Fungi_SRP links to Rfam database...	0.56	0.49	0.65	35	39006	24	6	13	5	36
SRP_00079	Plant_SRP links to Rfam database...	0.74	0.68	0.81	60	41831	29	0	14	15	28
SRP_00085	Plant_SRP links to Rfam database...	0.86	0.78	0.95	79	45368	13	0	4	9	22
SRP_00086	Metazoa_SRP links to Rfam database...	0.94	0.88	1.00	88	44165	4	0	0	4	12
SRP_00087	Fungi_SRP links to Rfam database...	0.40	0.33	0.49	19	37362	26	5	15	6	39
SRP_00088	Bacteria_large_SRP links to Rfam database...	0.55	0.30	1.00	27	34164	4	0	0	4	62
SRP_00089	Bacteria_large_SRP links to Rfam database...	0.55	0.30	1.00	27	35751	4	0	0	4	63
SRP_00090	Bacteria_large_SRP links to Rfam database...	0.55	0.30	1.00	27	35484	4	0	0	4	63
SRP_00091	Fungi_SRP links to Rfam database...	0.59	0.46	0.75	44	52916	19	2	13	4	51
SRP_00099	Plant_SRP links to Rfam database...	0.61	0.58	0.64	55	44764	35	2	29	4	40
SRP_00102	Metazoa_SRP links to Rfam database...	0.93	0.86	1.00	87	44464	5	0	0	5	14
SRP_00103	Metazoa_SRP links to Rfam database...	0.93	0.86	1.00	88	45363	4	0	0	4	14
SRP_00104	Fungi_SRP links to Rfam database...	0.52	0.45	0.60	31	34401	23	6	15	2	38
SRP_00117	Metazoa_SRP links to Rfam database...	0.91	0.83	1.00	85	45366	6	0	0	6	17
SRP_00123	Metazoa_SRP links to Rfam database...	0.78	0.68	0.90	62	36516	15	1	6	8	29
SRP_00124	Metazoa_SRP links to Rfam database...	0.64	0.58	0.72	49	37060	31	3	16	12	36
SRP_00127	Fungi_SRP links to Rfam database...	0.61	0.43	0.88	51	72332	10	0	7	3	68
SRP_00130	Archaea_SRP links to Rfam database...	0.76	0.69	0.83	67	49689	25	1	13	11	30
SRP_00136	Fungi_SRP links to Rfam database...	0.61	0.54	0.70	38	44199	24	8	8	8	33
SRP_00142	Archaea_SRP links to Rfam database...	0.89	0.84	0.94	78	45973	13	0	5	8	15
SRP_00143	Archaea_SRP links to Rfam database...	0.81	0.76	0.87	77	49681	21	0	12	9	24
SRP_00144	Archaea_SRP links to Rfam database...	0.89	0.84	0.94	79	46581	14	0	5	9	15
SRP_00148	Fungi_SRP links to Rfam database...	0.73	0.57	0.93	50	50032	10	0	4	6	37
SRP_00152	Plant_SRP links to Rfam database...	0.86	0.79	0.93	81	45666	11	0	6	5	22
SRP_00153	Plant_SRP links to Rfam database...	0.89	0.79	0.99	85	46885	7	0	1	6	22
SRP_00157	Fungi_SRP links to Rfam database...	0.62	0.51	0.76	37	44204	20	3	9	8	35
SRP_00158	Fungi_SRP links to Rfam database...	0.49	0.35	0.68	40	124192	20	7	12	1	75
SRP_00160	Fungi_SRP links to Rfam database...	0.60	0.41	0.90	53	86261	10	1	5	4	77
SRP_00171	Metazoa_SRP links to Rfam database...	0.92	0.85	1.00	75	45376	17	0	0	17	13
SRP_00173	Bacteria_large_SRP links to Rfam database...	0.54	0.29	1.00	26	38200	5	0	0	5	64
SRP_00174	Bacteria_large_SRP links to Rfam database...	0.56	0.31	1.00	27	38754	4	0	0	4	59
SRP_00175	Fungi_SRP links to Rfam database...	0.60	0.48	0.77	40	44499	19	0	12	7	44
SRP_00178	Plant_SRP links to Rfam database...	0.91	0.83	0.99	85	45667	7	0	1	6	17
SRP_00179	Plant_SRP links to Rfam database...	0.89	0.79	1.00	83	45973	9	0	0	9	22
SRP_00181	Plant_SRP links to Rfam database...	0.85	0.78	0.93	80	45970	13	0	6	7	22
SRP_00182	Plant_SRP links to Rfam database...	0.87	0.79	0.95	80	45972	11	0	4	7	21
SRP_00184	Plant_SRP links to Rfam database...	0.85	0.78	0.92	78	45971	15	0	7	8	22
SRP_00188	Plant_SRP links to Rfam database...	0.88	0.85	0.91	67	31051	13	0	7	6	12
SRP_00197	Archaea_SRP links to Rfam database...	0.90	0.83	0.97	84	49368	12	0	3	9	17
SRP_00198	Archaea_SRP links to Rfam database...	0.90	0.83	0.97	86	50951	11	0	3	8	17
SRP_00199	Archaea_SRP links to Rfam database...	0.87	0.81	0.93	85	50949	12	0	6	6	20
SRP_00201	Archaea_SRP links to Rfam database...	0.88	0.80	0.97	89	47803	4	0	3	1	22
SRP_00202	Archaea_SRP links to Rfam database...	0.86	0.76	0.97	89	54193	7	0	3	4	28
SRP_00203	Archaea_SRP links to Rfam database...	0.76	0.70	0.84	73	48741	18	0	14	4	32
SRP_00204	Archaea_SRP links to Rfam database...	0.86	0.79	0.94	81	49055	13	0	5	8	21
SRP_00206	Archaea_SRP links to Rfam database...	0.90	0.82	0.98	89	47804	5	0	2	3	19
SRP_00208	Archaea_SRP links to Rfam database...	0.87	0.79	0.96	80	46582	12	0	3	9	21
SRP_00228	Metazoa_SRP links to Rfam database...	0.92	0.86	0.99	82	45368	10	0	1	9	13
SRP_00230	Fungi_SRP links to Rfam database...	0.75	0.57	0.98	51	39569	6	0	1	5	39
SRP_00234	Bacteria_large_SRP links to Rfam database...	0.55	0.30	1.00	26	36289	5	0	0	5	60
SRP_00239	Plant_SRP links to Rfam database...	0.50	0.48	0.51	45	50315	47	5	38	4	48
SRP_00240	Plant_SRP links to Rfam database...	0.76	0.69	0.83	70	48121	21	1	13	7	32
SRP_00241	Plant_SRP links to Rfam database...	0.53	0.51	0.55	42	45979	47	8	27	12	40
SRP_00247	Metazoa_SRP links to Rfam database...	0.58	0.56	0.59	49	47195	40	6	28	6	38
SRP_00252	Metazoa_SRP links to Rfam database...	0.62	0.58	0.65	52	49061	40	5	23	12	37
SRP_00253	Metazoa_SRP links to Rfam database...	0.62	0.59	0.65	53	49374	38	5	23	10	37
SRP_00254	Fungi_SRP links to Rfam database...	0.32	0.28	0.36	17	32338	35	6	24	5	44
SRP_00255	Archaea_SRP links to Rfam database...	0.78	0.73	0.82	69	47502	25	1	14	10	25
SRP_00257	Metazoa_SRP links to Rfam database...	0.54	0.47	0.62	51	50958	33	5	26	2	57
SRP_00260	Metazoa_SRP links to Rfam database...	0.58	0.52	0.64	52	47814	34	5	24	5	48
SRP_00265	Fungi_SRP links to Rfam database...	0.64	0.55	0.75	40	41275	21	3	10	8	33
SRP_00267	Metazoa_SRP links to Rfam database...	0.91	0.85	0.96	82	44466	8	0	3	5	14
SRP_00276	Archaea_SRP links to Rfam database...	0.89	0.82	0.98	90	50629	6	0	2	4	20
SRP_00278	Archaea_SRP links to Rfam database...	0.83	0.74	0.92	78	45971	10	0	7	3	27
SRP_00282	Metazoa_SRP links to Rfam database...	0.37	0.43	0.33	27	43282	65	17	39	9	36
SRP_00286	Fungi_SRP links to Rfam database...	0.51	0.30	0.87	52	136966	10	0	8	2	122
SRP_00287	Fungi_SRP links to Rfam database...	0.58	0.36	0.94	58	141716	4	0	4	0	104
SRP_00290	Fungi_SRP links to Rfam database...	0.52	0.33	0.80	45	100520	16	0	11	5	90
SRP_00292	Fungi_SRP links to Rfam database...	0.51	0.30	0.88	52	137491	10	0	7	3	121
SRP_00294	Fungi_SRP links to Rfam database...	0.58	0.34	0.98	57	129228	4	0	1	3	110
SRP_00299	Metazoa_SRP links to Rfam database...	0.88	0.81	0.96	80	44170	12	0	3	9	19
SRP_00300	Metazoa_SRP links to Rfam database...	0.92	0.87	0.98	82	44169	10	0	2	8	12
SRP_00301	Fungi_SRP links to Rfam database...	0.68	0.50	0.93	43	32594	11	0	3	8	43
SRP_00302	Fungi_SRP links to Rfam database...	0.60	0.49	0.74	40	41562	20	0	14	6	41
SRP_00308	Bacteria_large_SRP links to Rfam database...	0.55	0.31	1.00	27	36288	4	0	0	4	61
SRP_00317	Metazoa_SRP links to Rfam database...	0.90	0.84	0.98	82	45066	10	0	2	8	16
SRP_00321	Archaea_SRP links to Rfam database...	0.87	0.80	0.96	86	47496	8	1	3	4	22
SRP_00322	Archaea_SRP links to Rfam database...	0.83	0.74	0.93	81	48429	10	0	6	4	28
SRP_00323	Archaea_SRP links to Rfam database...	0.89	0.81	0.98	87	47189	7	0	2	5	20
SRP_00328	Metazoa_SRP links to Rfam database...	0.59	0.54	0.65	46	39550	30	5	20	5	39
SRP_00329	Metazoa_SRP links to Rfam database...	0.71	0.64	0.79	54	39835	24	2	12	10	31
SRP_00330	Archaea_SRP links to Rfam database...	0.82	0.76	0.88	72	50004	21	1	9	11	23
SRP_00331	Metazoa_SRP links to Rfam database...	0.65	0.59	0.73	51	37605	26	2	17	7	36
SRP_00332	Archaea_SRP links to Rfam database...	0.91	0.84	0.98	89	50312	6	0	2	4	17
SRP_00335	Bacteria_large_SRP links to Rfam database...	0.46	0.38	0.56	15	35218	16	7	5	4	24
SRP_00337	Bacteria_large_SRP links to Rfam database...	0.54	0.30	1.00	27	35484	4	0	0	4	64
SRP_00339	Archaea_SRP links to Rfam database...	0.81	0.74	0.88	70	44471	17	1	9	7	24
SRP_00340	Metazoa_SRP links to Rfam database...	0.55	0.52	0.59	43	41255	43	5	25	13	39
SRP_00347	Metazoa_SRP links to Rfam database...	0.90	0.83	0.96	80	46582	12	0	3	9	16
SRP_00361	Plant_SRP links to Rfam database...	0.71	0.67	0.76	60	41826	27	5	14	8	30
SRP_00368	Metazoa_SRP links to Rfam database...	0.93	0.87	1.00	85	43871	7	0	0	7	13
SRP_00371	Fungi_SRP links to Rfam database...	0.63	0.50	0.80	41	36264	17	0	10	7	41
SRP_00382	Fungi_SRP links to Rfam database...	0.60	0.36	0.98	62	141715	1	0	1	0	108
TMR_00173	tmRNA links to Rfam database...	0.12	0.07	0.19	3	42179	23	0	13	10	39
TMR_00357	tmRNA links to Rfam database...	0.37	0.26	0.52	24	82982	24	7	15	2	68
TMR_00601	tmRNA links to Rfam database...	0.51	0.38	0.70	16	58973	33	2	5	26	26
TMR_00696	tmRNA links to Rfam database...	0.44	0.30	0.65	34	85026	19	2	16	1	80

^top

Performance of IPknot - scored lower in this pairwise comparison

1. Total counts & total scores for IPknot

Total Base Pair Counts
Total TP	25524
Total TN	24933015
Total FP	12316
Total FP CONTRA	1643
Total FP INCONS	8531
Total FP COMP	2142
Total FN	17088

Total Scores
MCC	0.654
Average MCC ± 95% Confidence Intervals	0.648 ± 0.016
Sensitivity	0.599
Positive Predictive Value	0.715
Nr of predictions	426

^top

2. Individual counts for IPknot [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00001	RNaseP_arch links to Rfam database...	0.76	0.73	0.80	55	34122	20	3	11	6	20
ASE_00002	RNaseP_arch links to Rfam database...	0.68	0.62	0.75	45	35451	20	2	13	5	28
ASE_00004	RNaseP_bact_a links to Rfam database...	0.75	0.66	0.85	64	47820	11	5	6	0	33
ASE_00005	RNaseP_bact_a links to Rfam database...	0.59	0.51	0.69	60	57883	30	0	27	3	57
ASE_00006	RNaseP_bact_a links to Rfam database...	0.60	0.52	0.70	48	47517	22	3	18	1	45
ASE_00007	RNaseP_bact_a links to Rfam database...	0.63	0.55	0.72	60	59602	27	0	23	4	50
ASE_00009	RNaseP_arch links to Rfam database...	0.71	0.67	0.75	45	26046	15	0	15	0	22
ASE_00010	RNaseP_bact_b links to Rfam database...	0.70	0.66	0.74	54	49697	29	5	14	10	28
ASE_00012	RNaseP_bact_a links to Rfam database...	0.66	0.56	0.78	69	73832	22	5	14	3	54
ASE_00014	RNaseP_arch links to Rfam database...	0.56	0.50	0.63	53	54201	33	7	24	2	53
ASE_00017	RNaseP_nuc links to Rfam database...	0.28	0.31	0.26	20	50962	71	19	39	13	44
ASE_00018	RNaseP_bact_a links to Rfam database...	0.70	0.64	0.77	86	80489	27	0	26	1	48
ASE_00020	RNaseP_bact_a links to Rfam database...	0.67	0.58	0.77	73	73825	22	2	20	0	53
ASE_00021	RNaseP_bact_a links to Rfam database...	0.70	0.57	0.85	91	104089	21	3	13	5	69
ASE_00022	RNaseP_bact_b links to Rfam database...	0.69	0.52	0.93	64	82959	9	0	5	4	60
ASE_00023	RNaseP_bact_a links to Rfam database...	0.69	0.59	0.82	75	84163	20	0	17	3	52
ASE_00025	RNaseP_nuc links to Rfam database...	0.39	0.35	0.43	25	78548	82	5	28	49	46
ASE_00026	RNaseP_bact_a links to Rfam database...	0.56	0.50	0.63	55	59598	36	3	29	4	55
ASE_00028	RNaseP_bact_b links to Rfam database...	0.70	0.60	0.81	76	84572	24	3	15	6	50
ASE_00029	RNaseP_bact_a links to Rfam database...	0.68	0.57	0.81	70	82942	16	4	12	0	52
ASE_00030	RNaseP_bact_a links to Rfam database...	0.78	0.70	0.87	102	85374	15	3	12	0	43
ASE_00031	RNaseP_bact_a links to Rfam database...	0.62	0.54	0.71	68	86640	32	1	27	4	58
ASE_00032	RNaseP_bact_a links to Rfam database...	0.68	0.58	0.78	69	80112	22	0	19	3	49
ASE_00033	RNaseP_bact_a links to Rfam database...	0.71	0.57	0.88	69	64902	11	0	9	2	52
ASE_00035	RNaseP_bact_a links to Rfam database...	0.44	0.30	0.66	35	70447	21	4	14	3	83
ASE_00036	RNaseP_bact_a links to Rfam database...	0.58	0.52	0.66	68	75752	37	4	31	2	64
ASE_00037	RNaseP_bact_a links to Rfam database...	0.47	0.39	0.57	43	59265	34	0	32	2	67
ASE_00038	RNaseP_bact_a links to Rfam database...	0.59	0.53	0.66	54	53546	28	4	24	0	47
ASE_00040	RNaseP_bact_a links to Rfam database...	0.51	0.42	0.62	56	78913	38	0	34	4	77
ASE_00041	RNaseP_bact_a links to Rfam database...	0.69	0.50	0.96	54	57574	4	0	2	2	54
ASE_00042	RNaseP_bact_a links to Rfam database...	0.60	0.51	0.70	74	89994	33	1	31	1	71
ASE_00044	RNaseP_bact_a links to Rfam database...	0.70	0.70	0.72	73	54513	34	3	26	5	32
ASE_00045	RNaseP_bact_b links to Rfam database...	0.65	0.60	0.70	48	47209	29	7	14	8	32
ASE_00046	RNaseP_bact_a links to Rfam database...	0.67	0.45	1.00	46	50357	1	0	0	1	57
ASE_00047	RNaseP_bact_a links to Rfam database...	0.69	0.52	0.93	67	74233	5	1	4	0	63
ASE_00052	RNaseP_bact_a links to Rfam database...	0.61	0.51	0.72	57	61346	26	0	22	4	55
ASE_00053	RNaseP_bact_a links to Rfam database...	0.67	0.62	0.74	82	79290	31	6	23	2	51
ASE_00057	RNaseP_bact_a links to Rfam database...	0.69	0.59	0.80	79	82116	23	3	17	3	55
ASE_00064	RNaseP_bact_a links to Rfam database...	0.68	0.60	0.77	53	45382	22	3	13	6	36
ASE_00066	RNaseP_bact_a links to Rfam database...	0.78	0.63	0.95	82	72304	4	0	4	0	48
ASE_00068	RNaseP_bact_a links to Rfam database...	0.75	0.60	0.94	51	37621	3	0	3	0	34
ASE_00069	RNaseP_bact_a links to Rfam database...	0.65	0.56	0.76	78	82926	26	4	20	2	62
ASE_00074	RNaseP_bact_a links to Rfam database...	0.49	0.45	0.54	53	67798	45	4	41	0	66
ASE_00075	RNaseP_bact_a links to Rfam database...	0.71	0.61	0.83	99	108691	25	2	19	4	63
ASE_00076	RNaseP_bact_a links to Rfam database...	0.60	0.53	0.68	63	68173	31	3	26	2	55
ASE_00077	RNaseP_bact_a links to Rfam database...	0.68	0.53	0.87	46	45097	12	2	5	5	40
ASE_00078	RNaseP_bact_a links to Rfam database...	0.70	0.57	0.87	47	43017	7	1	6	0	36
ASE_00079	RNaseP_bact_a links to Rfam database...	0.61	0.54	0.68	54	55532	25	2	23	0	46
ASE_00080	RNaseP_bact_a links to Rfam database...	0.41	0.36	0.47	44	71537	54	5	45	4	79
ASE_00081	RNaseP_bact_a links to Rfam database...	0.79	0.71	0.88	69	49692	10	1	8	1	28
ASE_00082	RNaseP_bact_a links to Rfam database...	0.83	0.74	0.93	86	70408	18	0	6	12	30
ASE_00083	RNaseP_bact_a links to Rfam database...	0.77	0.72	0.82	79	62385	22	0	17	5	31
ASE_00084	RNaseP_bact_a links to Rfam database...	0.83	0.74	0.94	73	53550	8	1	4	3	26
ASE_00087	RNaseP_bact_a links to Rfam database...	0.74	0.63	0.87	90	88306	14	2	12	0	54
ASE_00090	RNaseP_bact_a links to Rfam database...	0.66	0.58	0.75	59	55532	20	1	19	0	42
ASE_00092	RNaseP_bact_a links to Rfam database...	0.85	0.78	0.93	88	63451	9	1	6	2	25
ASE_00096	RNaseP_bact_a links to Rfam database...	0.59	0.52	0.67	60	63456	30	3	27	0	55
ASE_00099	RNaseP_bact_a links to Rfam database...	0.80	0.70	0.92	84	64529	7	0	7	0	36
ASE_00100	RNaseP_nuc links to Rfam database...	0.29	0.25	0.33	19	82158	85	2	36	47	57
ASE_00102	RNaseP_bact_a links to Rfam database...	0.72	0.65	0.81	108	117721	29	5	21	3	58
ASE_00104	RNaseP_bact_a links to Rfam database...	0.75	0.66	0.84	79	64167	15	2	13	0	40
ASE_00105	RNaseP_bact_a links to Rfam database...	0.48	0.41	0.56	46	64179	39	6	30	3	65
ASE_00107	RNaseP_bact_a links to Rfam database...	0.73	0.66	0.82	84	73050	19	1	18	0	43
ASE_00108	RNaseP_nuc links to Rfam database...	0.45	0.43	0.47	27	46913	62	5	26	31	36
ASE_00111	RNaseP_nuc links to Rfam database...	0.16	0.14	0.18	8	50041	46	12	25	9	49
ASE_00112	RNaseP_bact_a links to Rfam database...	0.80	0.67	0.95	78	75384	10	1	3	6	38
ASE_00114	RNaseP_bact_b links to Rfam database...	0.54	0.45	0.65	35	45397	25	1	18	6	42
ASE_00115	RNaseP_bact_a links to Rfam database...	0.74	0.68	0.81	69	54530	23	4	12	7	32
ASE_00116	RNaseP_arch links to Rfam database...	0.32	0.24	0.42	16	31588	25	1	21	3	50
ASE_00118	RNaseP_bact_a links to Rfam database...	0.40	0.37	0.44	38	60639	50	3	46	1	64
ASE_00119	RNaseP_bact_a links to Rfam database...	0.85	0.81	0.91	87	62739	9	1	8	0	21
ASE_00120	RNaseP_arch links to Rfam database...	0.62	0.55	0.69	52	46896	23	7	16	0	42
ASE_00121	RNaseP_arch links to Rfam database...	0.43	0.37	0.51	34	45083	34	4	29	1	58
ASE_00122	RNaseP_bact_a links to Rfam database...	0.73	0.65	0.83	57	43296	12	0	12	0	31
ASE_00123	RNaseP_bact_a links to Rfam database...	0.52	0.49	0.55	42	38427	38	2	32	4	43
ASE_00125	RNaseP_bact_a links to Rfam database...	0.75	0.65	0.86	57	39274	11	0	9	2	31
ASE_00128	RNaseP_bact_a links to Rfam database...	0.78	0.65	0.94	65	53232	7	0	4	3	35
ASE_00129	RNaseP_bact_a links to Rfam database...	0.70	0.67	0.74	74	62735	27	5	21	1	37
ASE_00131	RNaseP_bact_a links to Rfam database...	0.80	0.66	0.98	56	39283	5	0	1	4	29
ASE_00132	RNaseP_bact_a links to Rfam database...	0.63	0.48	0.82	46	50347	11	1	9	1	49
ASE_00134	RNaseP_bact_a links to Rfam database...	0.51	0.47	0.55	45	50321	37	4	33	0	50
ASE_00135	RNaseP_bact_a links to Rfam database...	0.67	0.58	0.79	63	63110	22	1	16	5	46
ASE_00136	RNaseP_bact_a links to Rfam database...	0.61	0.52	0.72	48	48138	28	1	18	9	44
ASE_00137	RNaseP_bact_a links to Rfam database...	0.75	0.68	0.82	67	48434	15	0	15	0	31
ASE_00138	RNaseP_bact_a links to Rfam database...	0.58	0.48	0.70	39	40414	17	1	16	0	42
ASE_00139	RNaseP_bact_a links to Rfam database...	0.73	0.63	0.84	66	54206	15	0	13	2	38
ASE_00140	RNaseP_bact_a links to Rfam database...	0.72	0.61	0.85	76	70787	14	3	10	1	49
ASE_00142	RNaseP_bact_a links to Rfam database...	0.73	0.65	0.81	79	67064	19	4	14	1	43
ASE_00145	RNaseP_arch links to Rfam database...	0.63	0.53	0.75	59	70046	24	5	15	4	52
ASE_00146	RNaseP_bact_a links to Rfam database...	0.55	0.43	0.72	53	70802	22	5	16	1	71
ASE_00148	RNaseP_arch links to Rfam database...	0.74	0.69	0.80	106	112443	26	3	23	0	48
ASE_00151	RNaseP_bact_a links to Rfam database...	0.52	0.49	0.55	48	51916	41	9	30	2	50
ASE_00153	RNaseP_nuc links to Rfam database...	0.52	0.51	0.54	37	57562	60	6	25	29	36
ASE_00154	RNaseP_arch links to Rfam database...	0.70	0.64	0.76	68	65252	24	2	19	3	39
ASE_00155	RNaseP_arch links to Rfam database...	0.58	0.52	0.64	74	93412	45	4	38	3	68
ASE_00161	RNaseP_bact_b links to Rfam database...	0.38	0.34	0.43	30	53558	42	6	34	2	57
ASE_00163	RNaseP_bact_a links to Rfam database...	0.39	0.35	0.43	33	53224	53	4	40	9	60
ASE_00165	RNaseP_bact_a links to Rfam database...	0.65	0.55	0.77	56	52902	18	4	13	1	45
ASE_00168	RNaseP_nuc links to Rfam database...	0.28	0.31	0.26	20	60648	74	18	40	16	44
ASE_00169	RNaseP_bact_a links to Rfam database...	0.52	0.44	0.62	47	57215	30	0	29	1	60
ASE_00170	RNaseP_bact_a links to Rfam database...	0.63	0.55	0.73	51	48758	20	3	16	1	42
ASE_00171	RNaseP_bact_a links to Rfam database...	0.71	0.67	0.76	63	48433	20	4	16	0	31
ASE_00172	RNaseP_bact_a links to Rfam database...	0.81	0.71	0.94	75	58916	5	1	4	0	31
ASE_00174	RNaseP_bact_a links to Rfam database...	0.63	0.60	0.66	65	60977	33	8	25	0	44
ASE_00175	RNaseP_bact_a links to Rfam database...	0.62	0.55	0.70	59	59947	26	2	23	1	48
ASE_00176	RNaseP_bact_a links to Rfam database...	0.45	0.42	0.49	46	59937	50	6	42	2	64
ASE_00179	RNaseP_bact_a links to Rfam database...	0.65	0.56	0.75	47	44190	18	2	14	2	37
ASE_00180	RNaseP_bact_a links to Rfam database...	0.69	0.56	0.85	56	51294	10	2	8	0	44
ASE_00181	RNaseP_bact_a links to Rfam database...	0.60	0.53	0.67	56	57547	31	0	27	4	50
ASE_00182	RNaseP_bact_a links to Rfam database...	0.57	0.53	0.62	72	84139	44	3	41	0	64
ASE_00184	RNaseP_bact_a links to Rfam database...	0.71	0.70	0.73	71	54518	26	4	22	0	31
ASE_00185	RNaseP_bact_a links to Rfam database...	0.79	0.69	0.92	88	73440	10	0	8	2	40
ASE_00186	RNaseP_bact_a links to Rfam database...	0.74	0.68	0.81	90	78892	26	1	20	5	42
ASE_00187	RNaseP_arch links to Rfam database...	0.53	0.43	0.65	49	68560	28	2	24	2	66
ASE_00189	RNaseP_bact_b links to Rfam database...	0.72	0.58	0.91	59	63125	8	1	5	2	43
ASE_00190	RNaseP_bact_b links to Rfam database...	0.75	0.58	0.98	52	45398	3	0	1	2	38
ASE_00191	RNaseP_arch links to Rfam database...	0.72	0.66	0.80	40	29596	18	0	10	8	21
ASE_00192	RNaseP_bact_b links to Rfam database...	0.71	0.62	0.80	83	84562	26	2	19	5	50
ASE_00194	RNaseP_bact_b links to Rfam database...	0.53	0.45	0.64	53	73453	34	0	30	4	66
ASE_00196	RNaseP_arch links to Rfam database...	0.76	0.75	0.78	56	31554	20	2	14	4	19
ASE_00197	RNaseP_bact_a links to Rfam database...	0.67	0.57	0.78	83	89147	28	1	22	5	62
ASE_00203	RNaseP_bact_a links to Rfam database...	0.77	0.69	0.87	66	46589	10	1	9	0	30
ASE_00204	RNaseP_bact_b links to Rfam database...	0.64	0.45	0.93	50	67842	8	0	4	4	62
ASE_00205	RNaseP_arch links to Rfam database...	0.53	0.49	0.59	44	45981	33	6	25	2	46
ASE_00209	RNaseP_arch links to Rfam database...	0.53	0.49	0.58	43	42997	31	5	26	0	45
ASE_00210	RNaseP_arch links to Rfam database...	0.58	0.58	0.58	38	27195	30	7	21	2	27
ASE_00212	RNaseP_bact_a links to Rfam database...	0.73	0.68	0.79	101	93833	31	3	24	4	47
ASE_00213	RNaseP_arch links to Rfam database...	0.77	0.67	0.90	44	27212	5	1	4	0	22
ASE_00214	RNaseP_bact_a links to Rfam database...	0.80	0.78	0.83	80	56184	23	3	13	7	23
ASE_00215	RNaseP_bact_a links to Rfam database...	0.48	0.41	0.56	41	48443	32	1	31	0	58
ASE_00216	RNaseP_bact_a links to Rfam database...	0.66	0.62	0.70	51	39267	22	3	19	0	31
ASE_00217	RNaseP_bact_a links to Rfam database...	0.34	0.29	0.41	26	40406	39	7	31	1	64
ASE_00221	RNaseP_bact_a links to Rfam database...	0.61	0.46	0.82	54	64554	12	1	11	0	63
ASE_00222	RNaseP_arch links to Rfam database...	0.66	0.62	0.70	98	111961	42	4	38	0	59
ASE_00227	RNaseP_bact_a links to Rfam database...	0.33	0.29	0.37	39	78897	67	5	62	0	94
ASE_00228	RNaseP_bact_a links to Rfam database...	0.78	0.74	0.82	64	46893	16	6	8	2	22
ASE_00229	RNaseP_bact_a links to Rfam database...	0.73	0.63	0.83	55	42420	12	3	8	1	32
ASE_00231	RNaseP_bact_a links to Rfam database...	0.74	0.66	0.83	63	47819	13	3	10	0	33
ASE_00232	RNaseP_bact_a links to Rfam database...	0.80	0.77	0.82	65	38424	14	7	7	0	19
ASE_00234	RNaseP_bact_a links to Rfam database...	0.58	0.49	0.70	63	75376	31	2	25	4	66
ASE_00237	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	45686	81	18	49	14	56
ASE_00238	RNaseP_bact_a links to Rfam database...	0.64	0.54	0.75	62	64178	22	1	20	1	52
ASE_00240	RNaseP_bact_a links to Rfam database...	0.59	0.54	0.64	50	46587	30	1	27	2	43
ASE_00241	RNaseP_bact_a links to Rfam database...	0.72	0.60	0.87	52	43896	8	1	7	0	35
ASE_00242	RNaseP_bact_a links to Rfam database...	0.73	0.59	0.92	66	61003	6	1	5	0	46
ASE_00245	RNaseP_nuc links to Rfam database...	0.91	0.87	0.94	68	55206	31	0	4	27	10
ASE_00246	RNaseP_nuc links to Rfam database...	0.38	0.34	0.43	23	48151	40	6	25	9	44
ASE_00247	RNaseP_nuc links to Rfam database...	0.27	0.30	0.25	19	54209	72	17	40	15	45
ASE_00248	RNaseP_bact_a links to Rfam database...	0.71	0.61	0.84	69	62399	15	0	13	2	45
ASE_00250	RNaseP_bact_a links to Rfam database...	0.67	0.53	0.85	69	78922	15	4	8	3	62
ASE_00252	RNaseP_bact_a links to Rfam database...	0.77	0.64	0.92	108	115323	13	0	9	4	60
ASE_00254	RNaseP_bact_a links to Rfam database...	0.76	0.68	0.85	56	36790	15	3	7	5	26
ASE_00255	RNaseP_bact_a links to Rfam database...	0.72	0.62	0.85	80	74597	14	3	11	0	50
ASE_00257	RNaseP_bact_a links to Rfam database...	0.76	0.63	0.91	61	50973	6	1	5	0	36
ASE_00258	RNaseP_nuc links to Rfam database...	0.91	0.87	0.96	47	26747	6	2	0	4	7
ASE_00263	RNaseP_bact_a links to Rfam database...	0.70	0.62	0.80	74	70407	19	3	16	0	46
ASE_00264	RNaseP_nuc links to Rfam database...	0.53	0.49	0.57	49	49055	45	1	36	8	51
ASE_00267	RNaseP_bact_a links to Rfam database...	0.54	0.42	0.70	37	45097	22	0	16	6	51
ASE_00270	RNaseP_bact_a links to Rfam database...	0.76	0.73	0.79	93	72273	26	1	23	2	35
ASE_00274	RNaseP_bact_a links to Rfam database...	0.64	0.55	0.75	57	55535	19	5	14	0	46
ASE_00277	RNaseP_bact_a links to Rfam database...	0.59	0.53	0.66	48	48132	25	4	21	0	43
ASE_00279	RNaseP_bact_a links to Rfam database...	0.73	0.62	0.86	63	53228	10	3	7	0	38
ASE_00280	RNaseP_bact_a links to Rfam database...	0.70	0.61	0.81	60	51929	15	1	13	1	38
ASE_00281	RNaseP_bact_a links to Rfam database...	0.82	0.74	0.90	65	44479	13	0	7	6	23
ASE_00282	RNaseP_bact_a links to Rfam database...	0.55	0.51	0.60	65	77706	44	6	38	0	62
ASE_00283	RNaseP_bact_a links to Rfam database...	0.77	0.72	0.83	77	61683	16	5	11	0	30
ASE_00284	RNaseP_bact_a links to Rfam database...	0.69	0.68	0.72	73	58209	34	5	24	5	35
ASE_00285	RNaseP_bact_a links to Rfam database...	0.80	0.75	0.86	91	68900	23	3	12	8	31
ASE_00286	RNaseP_bact_a links to Rfam database...	0.67	0.57	0.80	52	46600	17	1	12	4	40
ASE_00287	RNaseP_bact_a links to Rfam database...	0.72	0.69	0.76	71	54853	23	2	20	1	32
ASE_00288	RNaseP_bact_a links to Rfam database...	0.77	0.59	1.00	55	46001	0	0	0	0	38
ASE_00289	RNaseP_bact_a links to Rfam database...	0.79	0.69	0.90	109	100904	15	5	7	3	48
ASE_00292	RNaseP_bact_a links to Rfam database...	0.68	0.60	0.76	83	81701	27	2	24	1	55
ASE_00294	RNaseP_bact_a links to Rfam database...	0.78	0.68	0.90	117	114351	14	1	12	1	54
ASE_00295	RNaseP_bact_a links to Rfam database...	0.72	0.63	0.84	82	73822	16	3	13	0	49
ASE_00296	RNaseP_bact_a links to Rfam database...	0.48	0.43	0.53	63	91688	56	5	50	1	82
ASE_00297	RNaseP_bact_a links to Rfam database...	0.68	0.62	0.74	61	52893	21	3	18	0	37
ASE_00298	RNaseP_bact_a links to Rfam database...	0.57	0.51	0.64	58	67438	34	1	31	2	55
ASE_00299	RNaseP_bact_a links to Rfam database...	0.63	0.56	0.72	56	49377	27	1	21	5	44
ASE_00303	RNaseP_nuc links to Rfam database...	0.71	0.67	0.74	64	67810	33	1	21	11	31
ASE_00305	RNaseP_bact_b links to Rfam database...	0.73	0.58	0.92	49	54562	9	0	4	5	36
ASE_00313	RNaseP_nuc links to Rfam database...	0.69	0.66	0.71	59	62398	44	4	20	20	30
ASE_00316	RNaseP_nuc links to Rfam database...	0.78	0.63	0.97	62	107816	35	0	2	33	36
ASE_00318	RNaseP_bact_b links to Rfam database...	0.52	0.43	0.64	51	80120	32	4	25	3	67
ASE_00321	RNaseP_bact_b links to Rfam database...	0.72	0.57	0.91	50	54560	8	3	2	3	38
ASE_00327	RNaseP_nuc links to Rfam database...	0.74	0.72	0.76	64	57207	25	6	14	5	25
ASE_00328	RNaseP_bact_b links to Rfam database...	0.70	0.60	0.83	67	72690	20	4	10	6	45
ASE_00329	RNaseP_nuc links to Rfam database...	0.72	0.70	0.75	44	40696	33	9	6	18	19
ASE_00330	RNaseP_nuc links to Rfam database...	0.75	0.71	0.79	64	56199	35	0	17	18	26
ASE_00332	RNaseP_bact_a links to Rfam database...	0.55	0.50	0.60	69	81695	47	2	44	1	69
ASE_00335	RNaseP_bact_b links to Rfam database...	0.68	0.59	0.78	68	75379	25	2	17	6	48
ASE_00337	RNaseP_nuc links to Rfam database...	0.60	0.59	0.62	42	39272	39	5	21	13	29
ASE_00338	RNaseP_nuc links to Rfam database...	0.77	0.68	0.87	67	66353	26	3	7	16	31
ASE_00339	RNaseP_bact_a links to Rfam database...	0.72	0.63	0.82	75	80108	26	0	17	9	44
ASE_00340	RNaseP_bact_a links to Rfam database...	0.76	0.75	0.77	64	45973	25	8	11	6	21
ASE_00342	RNaseP_bact_a links to Rfam database...	0.75	0.68	0.83	78	62387	17	1	15	1	37
ASE_00343	RNaseP_bact_a links to Rfam database...	0.77	0.67	0.87	76	83349	21	0	11	10	37
ASE_00346	RNaseP_arch links to Rfam database...	0.37	0.34	0.40	33	48123	51	3	46	2	64
ASE_00353	RNaseP_bact_a links to Rfam database...	0.57	0.51	0.63	55	57882	35	4	29	2	52
ASE_00359	RNaseP_arch links to Rfam database...	0.51	0.43	0.61	34	42722	22	3	19	0	46
ASE_00360	RNaseP_arch links to Rfam database...	0.50	0.45	0.57	29	29352	22	3	19	0	36
ASE_00361	RNaseP_bact_a links to Rfam database...	0.53	0.47	0.59	60	75364	45	9	33	3	67
ASE_00362	RNaseP_bact_a links to Rfam database...	0.66	0.59	0.74	54	48132	20	2	17	1	37
ASE_00363	RNaseP_bact_a links to Rfam database...	0.76	0.64	0.91	60	51294	7	0	6	1	34
ASE_00364	RNaseP_bact_a links to Rfam database...	0.63	0.56	0.70	59	54201	25	3	22	0	46
ASE_00366	RNaseP_bact_a links to Rfam database...	0.54	0.51	0.58	50	58567	36	5	31	0	48
ASE_00367	RNaseP_bact_a links to Rfam database...	0.62	0.55	0.71	47	43005	23	5	14	4	39
ASE_00369	RNaseP_bact_a links to Rfam database...	0.73	0.71	0.75	76	55843	27	0	26	1	31
ASE_00370	RNaseP_bact_a links to Rfam database...	0.49	0.43	0.55	36	41840	29	1	28	0	48
ASE_00372	RNaseP_bact_a links to Rfam database...	0.74	0.68	0.80	68	51918	20	3	14	3	32
ASE_00374	RNaseP_bact_a links to Rfam database...	0.64	0.61	0.68	54	44770	26	5	21	0	34
ASE_00375	RNaseP_bact_a links to Rfam database...	0.79	0.70	0.89	77	60291	10	1	9	0	33
ASE_00376	RNaseP_bact_a links to Rfam database...	0.62	0.57	0.68	60	56865	30	5	23	2	45
ASE_00377	RNaseP_bact_a links to Rfam database...	0.77	0.74	0.81	79	57532	24	3	16	5	28
ASE_00379	RNaseP_bact_a links to Rfam database...	0.70	0.62	0.79	55	45986	16	5	10	1	34
ASE_00380	RNaseP_bact_a links to Rfam database...	0.54	0.49	0.59	49	54863	35	4	30	1	50
ASE_00382	RNaseP_bact_a links to Rfam database...	0.69	0.58	0.82	49	41845	14	5	6	3	35
ASE_00383	RNaseP_bact_a links to Rfam database...	0.71	0.64	0.80	67	54531	19	5	12	2	38
ASE_00384	RNaseP_bact_a links to Rfam database...	0.73	0.71	0.76	65	48430	25	1	20	4	27
ASE_00385	RNaseP_bact_a links to Rfam database...	0.63	0.56	0.73	45	41843	17	7	10	0	36
ASE_00386	RNaseP_bact_a links to Rfam database...	0.65	0.60	0.70	58	50320	30	1	24	5	38
ASE_00387	RNaseP_bact_a links to Rfam database...	0.75	0.65	0.86	68	55866	13	1	10	2	36
ASE_00388	RNaseP_bact_a links to Rfam database...	0.74	0.61	0.90	54	45693	7	0	6	1	35
ASE_00390	RNaseP_bact_a links to Rfam database...	0.77	0.71	0.85	60	42124	18	0	11	7	25
ASE_00393	RNaseP_bact_a links to Rfam database...	0.72	0.65	0.81	60	47821	15	0	14	1	33
ASE_00394	RNaseP_bact_a links to Rfam database...	0.80	0.76	0.85	71	46887	14	3	10	1	22
ASE_00395	RNaseP_bact_a links to Rfam database...	0.77	0.73	0.81	61	41541	14	2	12	0	23
ASE_00396	RNaseP_bact_a links to Rfam database...	0.68	0.61	0.76	51	41549	18	5	11	2	32
ASE_00397	RNaseP_bact_a links to Rfam database...	0.81	0.72	0.92	76	54532	7	2	5	0	29
ASE_00398	RNaseP_bact_a links to Rfam database...	0.65	0.59	0.72	61	55860	25	1	23	1	43
ASE_00400	RNaseP_bact_a links to Rfam database...	0.74	0.65	0.83	69	57887	15	1	13	1	37
ASE_00401	RNaseP_bact_a links to Rfam database...	0.64	0.60	0.68	75	76918	35	5	30	0	51
ASE_00402	RNaseP_bact_a links to Rfam database...	0.68	0.60	0.77	51	42420	15	4	11	0	34
ASE_00403	RNaseP_bact_a links to Rfam database...	0.57	0.47	0.69	50	55873	22	0	22	0	57
ASE_00404	RNaseP_bact_a links to Rfam database...	0.58	0.51	0.66	43	43006	22	1	21	0	42
ASE_00406	RNaseP_bact_a links to Rfam database...	0.74	0.64	0.87	60	48759	11	0	9	2	34
ASE_00411	RNaseP_bact_a links to Rfam database...	0.59	0.46	0.75	41	49400	15	5	9	1	48
ASE_00412	RNaseP_bact_a links to Rfam database...	0.56	0.47	0.67	49	58238	24	7	17	0	56
ASE_00413	RNaseP_bact_a links to Rfam database...	0.47	0.46	0.49	37	44475	42	5	34	3	44
ASE_00414	RNaseP_bact_a links to Rfam database...	0.46	0.40	0.52	38	46287	42	2	33	7	57
ASE_00415	RNaseP_bact_a links to Rfam database...	0.70	0.65	0.74	67	54856	28	1	22	5	36
ASE_00416	RNaseP_bact_a links to Rfam database...	0.71	0.60	0.84	76	77330	20	0	15	5	51
ASE_00417	RNaseP_arch links to Rfam database...	0.43	0.41	0.46	41	54525	53	4	45	4	59
ASE_00418	RNaseP_arch links to Rfam database...	0.20	0.19	0.21	14	38714	55	2	51	2	61
ASE_00419	RNaseP_bact_a links to Rfam database...	0.78	0.74	0.83	76	54854	17	3	13	1	27
ASE_00420	RNaseP_nuc links to Rfam database...	0.76	0.76	0.75	48	43301	39	1	15	23	15
ASE_00422	RNaseP_bact_a links to Rfam database...	0.69	0.65	0.74	61	46889	26	6	15	5	33
ASE_00423	RNaseP_bact_a links to Rfam database...	0.65	0.64	0.66	70	56847	36	6	30	0	39
ASE_00426	RNaseP_bact_a links to Rfam database...	0.59	0.52	0.68	56	60993	26	1	25	0	52
ASE_00427	RNaseP_nuc links to Rfam database...	0.19	0.20	0.20	9	40709	45	9	28	8	37
ASE_00428	RNaseP_bact_a links to Rfam database...	0.65	0.59	0.72	74	76533	33	2	27	4	51
ASE_00430	RNaseP_bact_a links to Rfam database...	0.76	0.68	0.85	66	46893	17	3	9	5	31
ASE_00431	RNaseP_bact_a links to Rfam database...	0.71	0.61	0.82	58	46289	18	1	12	5	37
ASE_00434	RNaseP_bact_b links to Rfam database...	0.70	0.60	0.81	66	68184	23	3	12	8	44
ASE_00437	RNaseP_bact_a links to Rfam database...	0.55	0.41	0.74	56	79325	20	0	20	0	79
ASE_00438	RNaseP_bact_a links to Rfam database...	0.69	0.59	0.79	69	65979	18	0	18	0	47
ASE_00441	RNaseP_bact_a links to Rfam database...	0.79	0.72	0.86	81	64167	15	2	11	2	31
ASE_00443	RNaseP_nuc links to Rfam database...	0.94	0.90	0.98	45	26750	24	0	1	23	5
ASE_00447	RNaseP_bact_a links to Rfam database...	0.67	0.59	0.77	68	60290	25	0	20	5	48
ASE_00448	RNaseP_bact_a links to Rfam database...	0.53	0.42	0.66	47	64190	30	4	20	6	65
ASE_00451	RNaseP_bact_a links to Rfam database...	0.75	0.66	0.85	82	70780	14	2	12	0	43
ASE_00454	RNaseP_nuc links to Rfam database...	0.56	0.56	0.57	35	43304	47	4	22	21	28
CRW_00013	Intron_gpI links to Rfam database...	0.33	0.26	0.42	30	103669	55	7	34	14	85
CRW_00016	Intron_gpI links to Rfam database...	0.75	0.67	0.83	80	77325	26	6	10	10	40
CRW_00610	Intron_gpI links to Rfam database...	0.61	0.54	0.68	44	36250	21	6	15	0	37
CRW_00613	Intron_gpI links to Rfam database...	0.86	0.78	0.94	61	34915	13	1	3	9	17
CRW_00614	Intron_gpI links to Rfam database...	0.13	0.14	0.13	8	121707	95	15	41	39	49
CRW_00618	Intron_gpI links to Rfam database...	0.25	0.25	0.26	15	56223	56	5	37	14	46
CRW_00619	Intron_gpI links to Rfam database...	0.42	0.30	0.58	22	164987	82	4	12	66	51
CRW_00620	Intron_gpI links to Rfam database...	0.20	0.21	0.19	13	150907	93	14	41	38	50
CRW_00621	Intron_gpI links to Rfam database...	0.35	0.31	0.39	22	153125	120	4	30	86	49
CRW_00623	Intron_gpI links to Rfam database...	0.30	0.23	0.39	19	129746	89	5	25	59	64
CRW_00633	Intron_gpI links to Rfam database...	0.64	0.58	0.72	61	63461	25	5	19	1	45
CRW_00634	Intron_gpI links to Rfam database...	0.60	0.56	0.65	53	64538	30	10	19	1	41
CRW_00670	Intron_gpI links to Rfam database...	0.83	0.78	0.87	94	70017	14	6	8	0	26
CRW_00671	Intron_gpI links to Rfam database...	0.82	0.74	0.92	86	62742	8	1	6	1	31
CRW_00672	Intron_gpI links to Rfam database...	0.76	0.72	0.80	80	72290	24	8	12	4	31
CRW_00674	Intron_gpI links to Rfam database...	0.75	0.69	0.83	85	83333	20	7	11	2	39
CRW_00676	Intron_gpI links to Rfam database...	0.47	0.44	0.51	51	93428	52	14	35	3	64
CRW_00692	Intron_gpI links to Rfam database...	0.56	0.47	0.68	42	68573	21	7	13	1	48
PDB_00827	Intron_gpI links to Rfam database...	0.79	0.65	0.95	53	26972	5	0	3	2	28
PDB_00919	RNaseP_bact_a links to Rfam database...	0.53	0.47	0.62	48	44175	34	2	28	4	55
RFA_00597	Telomerase-vert links to Rfam database...	0.52	0.50	0.55	54	97804	55	4	41	10	55
RFA_00598	Telomerase-vert links to Rfam database...	0.49	0.48	0.51	48	84572	68	5	41	22	53
RFA_00599	Telomerase-vert links to Rfam database...	0.75	0.73	0.77	81	101370	40	8	16	16	30
RFA_00600	Telomerase-vert links to Rfam database...	0.22	0.22	0.21	22	120191	99	29	53	17	78
RFA_00601	Telomerase-vert links to Rfam database...	0.45	0.46	0.43	53	99113	82	25	44	13	61
RFA_00602	Telomerase-vert links to Rfam database...	0.42	0.43	0.40	50	101351	83	20	54	9	66
RFA_00606	Telomerase-cil links to Rfam database...	0.69	0.67	0.72	26	21285	20	7	3	10	13
RFA_00620	Telomerase-cil links to Rfam database...	0.60	0.59	0.61	23	21907	28	1	14	13	16
RFA_00621	RNase_MRP links to Rfam database...	0.52	0.51	0.53	39	46287	44	1	33	10	37
RFA_00623	RNase_MRP links to Rfam database...	0.53	0.51	0.54	40	43882	46	2	32	12	38
RFA_00624	RNase_MRP links to Rfam database...	0.33	0.34	0.33	21	30071	44	13	30	1	40
RFA_00626	rne5 links to Rfam database...	0.89	0.85	0.94	74	56537	14	0	5	9	13
RFA_00627	rne5 links to Rfam database...	0.69	0.66	0.73	57	56875	35	4	17	14	30
RFA_00628	rne5 links to Rfam database...	0.95	0.90	1.00	77	57214	14	0	0	14	9
RFA_00630	rne5 links to Rfam database...	0.82	0.75	0.89	65	56880	14	0	8	6	22
RFA_00639	7SK links to Rfam database...	0.46	0.45	0.48	39	54533	46	8	35	3	48
RFA_00805	RNAIII links to Rfam database...	0.65	0.55	0.75	83	133276	35	1	26	8	67
RFA_00814	R2_retro_el links to Rfam database...	0.89	0.88	0.90	36	25160	11	0	4	7	5
RFA_00815	R2_retro_el links to Rfam database...	0.57	0.61	0.54	25	24485	28	5	16	7	16
RFA_00816	R2_retro_el links to Rfam database...	0.82	0.85	0.80	35	23176	12	8	1	3	6
RFA_00817	R2_retro_el links to Rfam database...	0.23	0.24	0.22	10	21900	38	11	24	3	31
RFA_00818	R2_retro_el links to Rfam database...	0.69	0.68	0.70	28	20261	15	9	3	3	13
RFA_00819	R2_retro_el links to Rfam database...	0.96	0.95	0.98	39	27926	26	0	1	25	2
RFA_00820	bicoid_3 links to Rfam database...	0.92	0.88	0.96	140	151379	10	2	4	4	20
RFA_00830	bicoid_3 links to Rfam database...	0.54	0.50	0.59	77	152498	97	6	47	44	77
SRP_00002	Metazoa_SRP links to Rfam database...	0.88	0.88	0.88	90	45048	13	4	8	1	12
SRP_00006	Metazoa_SRP links to Rfam database...	0.86	0.86	0.85	87	45651	18	3	12	3	14
SRP_00009	Plant_SRP links to Rfam database...	0.53	0.46	0.60	47	46587	33	3	28	2	55
SRP_00011	Plant_SRP links to Rfam database...	0.45	0.40	0.51	42	46277	41	1	40	0	62
SRP_00012	Plant_SRP links to Rfam database...	0.62	0.57	0.67	58	46273	29	1	28	0	43
SRP_00015	Plant_SRP links to Rfam database...	0.83	0.77	0.90	76	46276	10	0	8	2	23
SRP_00016	Archaea_SRP links to Rfam database...	0.94	0.93	0.95	101	47789	7	0	5	2	8
SRP_00018	Fungi_SRP links to Rfam database...	0.68	0.65	0.72	53	38429	28	4	17	7	28
SRP_00019	Fungi_SRP links to Rfam database...	0.82	0.78	0.87	71	35964	17	0	11	6	20
SRP_00024	Bacteria_large_SRP links to Rfam database...	0.55	0.53	0.58	46	37596	33	5	28	0	41
SRP_00026	Bacteria_large_SRP links to Rfam database...	0.79	0.72	0.86	63	36783	16	0	10	6	25
SRP_00027	Bacteria_large_SRP links to Rfam database...	0.73	0.67	0.81	58	37056	14	0	14	0	29
SRP_00030	Bacteria_large_SRP links to Rfam database...	0.79	0.78	0.80	69	36770	17	3	14	0	19
SRP_00031	Bacteria_large_SRP links to Rfam database...	0.64	0.62	0.67	55	36233	28	3	24	1	34
SRP_00037	Bacteria_large_SRP links to Rfam database...	0.64	0.62	0.66	54	36503	28	5	23	0	33
SRP_00050	Metazoa_SRP links to Rfam database...	0.96	0.94	0.98	93	44755	4	0	2	2	6
SRP_00053	Metazoa_SRP links to Rfam database...	0.90	0.83	0.98	78	45070	10	0	2	8	16
SRP_00060	Metazoa_SRP links to Rfam database...	0.91	0.91	0.90	91	44450	13	3	7	3	9
SRP_00061	Metazoa_SRP links to Rfam database...	0.90	0.88	0.92	88	44754	12	0	8	4	12
SRP_00066	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	45364	87	9	78	0	100
SRP_00069	Fungi_SRP links to Rfam database...	0.60	0.55	0.66	47	34382	26	2	22	2	38
SRP_00070	Fungi_SRP links to Rfam database...	0.32	0.36	0.29	44	126602	117	34	76	7	77
SRP_00073	Fungi_SRP links to Rfam database...	0.64	0.66	0.62	47	38984	43	8	21	14	24
SRP_00079	Plant_SRP links to Rfam database...	0.67	0.66	0.68	58	41820	33	3	24	6	30
SRP_00085	Plant_SRP links to Rfam database...	0.66	0.60	0.73	61	45367	27	4	19	4	40
SRP_00086	Metazoa_SRP links to Rfam database...	0.91	0.90	0.92	90	44155	10	1	7	2	10
SRP_00087	Fungi_SRP links to Rfam database...	0.19	0.22	0.16	13	37321	72	21	46	5	45
SRP_00088	Bacteria_large_SRP links to Rfam database...	0.69	0.69	0.69	61	34103	27	4	23	0	28
SRP_00089	Bacteria_large_SRP links to Rfam database...	0.89	0.87	0.92	78	35693	7	0	7	0	12
SRP_00090	Bacteria_large_SRP links to Rfam database...	0.85	0.83	0.86	75	35424	14	1	11	2	15
SRP_00091	Fungi_SRP links to Rfam database...	0.82	0.82	0.81	78	52879	22	4	14	4	17
SRP_00099	Plant_SRP links to Rfam database...	0.59	0.59	0.60	56	44757	38	6	31	1	39
SRP_00102	Metazoa_SRP links to Rfam database...	0.84	0.83	0.85	84	44452	15	3	12	0	17
SRP_00103	Metazoa_SRP links to Rfam database...	0.87	0.84	0.90	86	45355	12	2	8	2	16
SRP_00104	Fungi_SRP links to Rfam database...	0.45	0.51	0.41	35	34367	55	9	42	4	34
SRP_00117	Metazoa_SRP links to Rfam database...	0.85	0.78	0.93	80	45365	7	0	6	1	22
SRP_00123	Metazoa_SRP links to Rfam database...	0.93	0.91	0.94	83	36497	8	2	3	3	8
SRP_00124	Metazoa_SRP links to Rfam database...	0.86	0.81	0.92	69	37053	10	0	6	4	16
SRP_00127	Fungi_SRP links to Rfam database...	0.73	0.72	0.74	86	72273	34	8	23	3	33
SRP_00130	Archaea_SRP links to Rfam database...	0.67	0.67	0.67	65	49673	37	4	28	5	32
SRP_00136	Fungi_SRP links to Rfam database...	0.38	0.39	0.36	28	44176	55	12	37	6	43
SRP_00142	Archaea_SRP links to Rfam database...	0.44	0.44	0.45	41	45965	52	7	43	2	52
SRP_00143	Archaea_SRP links to Rfam database...	0.73	0.73	0.73	74	49669	33	1	26	6	27
SRP_00144	Archaea_SRP links to Rfam database...	0.76	0.73	0.78	69	46577	26	1	18	7	25
SRP_00148	Fungi_SRP links to Rfam database...	0.35	0.36	0.34	31	49994	68	11	50	7	56
SRP_00152	Plant_SRP links to Rfam database...	0.64	0.56	0.73	58	45673	22	2	20	0	45
SRP_00153	Plant_SRP links to Rfam database...	0.76	0.74	0.77	79	46869	25	3	20	2	28
SRP_00157	Fungi_SRP links to Rfam database...	0.40	0.42	0.38	30	44174	57	13	36	8	42
SRP_00158	Fungi_SRP links to Rfam database...	0.34	0.39	0.30	45	124101	113	41	64	8	70
SRP_00160	Fungi_SRP links to Rfam database...	0.36	0.32	0.42	41	86223	56	2	54	0	89
SRP_00171	Metazoa_SRP links to Rfam database...	0.06	0.06	0.07	5	45376	70	12	58	0	83
SRP_00173	Bacteria_large_SRP links to Rfam database...	0.81	0.79	0.83	71	38140	18	2	13	3	19
SRP_00174	Bacteria_large_SRP links to Rfam database...	0.78	0.76	0.81	65	38701	16	3	12	1	21
SRP_00175	Fungi_SRP links to Rfam database...	0.43	0.37	0.50	31	44489	36	5	26	5	53
SRP_00178	Plant_SRP links to Rfam database...	0.84	0.75	0.95	76	45673	6	0	4	2	26
SRP_00179	Plant_SRP links to Rfam database...	0.65	0.60	0.72	63	45968	28	2	23	3	42
SRP_00181	Plant_SRP links to Rfam database...	0.53	0.44	0.63	45	45985	26	0	26	0	57
SRP_00182	Plant_SRP links to Rfam database...	0.75	0.73	0.76	74	45959	25	3	20	2	27
SRP_00184	Plant_SRP links to Rfam database...	0.62	0.56	0.69	56	45975	29	2	23	4	44
SRP_00188	Plant_SRP links to Rfam database...	0.21	0.22	0.21	17	31044	64	6	58	0	62
SRP_00197	Archaea_SRP links to Rfam database...	0.68	0.57	0.82	58	49384	13	4	9	0	43
SRP_00198	Archaea_SRP links to Rfam database...	0.57	0.54	0.60	56	50946	39	6	32	1	47
SRP_00199	Archaea_SRP links to Rfam database...	0.69	0.65	0.73	68	50947	26	1	24	1	37
SRP_00201	Archaea_SRP links to Rfam database...	0.91	0.91	0.91	101	47784	12	4	6	2	10
SRP_00202	Archaea_SRP links to Rfam database...	0.97	0.96	0.97	112	54170	4	0	3	1	5
SRP_00203	Archaea_SRP links to Rfam database...	0.81	0.82	0.80	86	48720	30	1	21	8	19
SRP_00204	Archaea_SRP links to Rfam database...	0.78	0.76	0.80	78	49043	21	5	15	1	24
SRP_00206	Archaea_SRP links to Rfam database...	0.88	0.85	0.90	92	47793	11	5	5	1	16
SRP_00208	Archaea_SRP links to Rfam database...	0.85	0.84	0.87	85	46567	15	3	10	2	16
SRP_00228	Metazoa_SRP links to Rfam database...	0.97	0.97	0.98	92	45357	7	0	2	5	3
SRP_00230	Fungi_SRP links to Rfam database...	0.78	0.71	0.85	64	39546	14	0	11	3	26
SRP_00234	Bacteria_large_SRP links to Rfam database...	0.85	0.84	0.86	72	36231	16	0	12	4	14
SRP_00239	Plant_SRP links to Rfam database...	0.28	0.28	0.29	26	50313	65	16	48	1	67
SRP_00240	Plant_SRP links to Rfam database...	0.75	0.73	0.78	74	48110	28	2	19	7	28
SRP_00241	Plant_SRP links to Rfam database...	0.57	0.60	0.54	49	45965	44	12	30	2	33
SRP_00247	Metazoa_SRP links to Rfam database...	0.51	0.55	0.47	48	47176	58	9	45	4	39
SRP_00252	Metazoa_SRP links to Rfam database...	0.51	0.51	0.51	45	49053	47	7	36	4	44
SRP_00253	Metazoa_SRP links to Rfam database...	0.51	0.52	0.51	47	49362	51	9	37	5	43
SRP_00254	Fungi_SRP links to Rfam database...	0.50	0.54	0.47	33	32315	42	10	27	5	28
SRP_00255	Archaea_SRP links to Rfam database...	0.70	0.69	0.71	65	47495	29	1	25	3	29
SRP_00257	Metazoa_SRP links to Rfam database...	0.83	0.81	0.85	88	50937	17	4	11	2	20
SRP_00260	Metazoa_SRP links to Rfam database...	0.75	0.74	0.76	74	47798	25	4	19	2	26
SRP_00265	Fungi_SRP links to Rfam database...	0.59	0.58	0.60	42	41258	35	7	21	7	31
SRP_00267	Metazoa_SRP links to Rfam database...	0.88	0.90	0.86	86	44451	18	3	11	4	10
SRP_00276	Archaea_SRP links to Rfam database...	0.94	0.95	0.93	104	50609	9	5	3	1	6
SRP_00278	Archaea_SRP links to Rfam database...	0.74	0.72	0.75	76	45955	27	3	22	2	29
SRP_00282	Metazoa_SRP links to Rfam database...	0.33	0.40	0.27	25	43273	73	25	42	6	38
SRP_00286	Fungi_SRP links to Rfam database...	0.72	0.70	0.73	122	136859	52	2	43	7	52
SRP_00287	Fungi_SRP links to Rfam database...	0.64	0.62	0.67	100	141629	55	13	36	6	62
SRP_00290	Fungi_SRP links to Rfam database...	0.68	0.68	0.68	92	100440	53	3	41	9	43
SRP_00292	Fungi_SRP links to Rfam database...	0.52	0.51	0.53	88	137385	81	2	75	4	85
SRP_00294	Fungi_SRP links to Rfam database...	0.58	0.55	0.62	92	129137	59	5	52	2	75
SRP_00299	Metazoa_SRP links to Rfam database...	0.68	0.66	0.71	65	44162	28	1	25	2	34
SRP_00300	Metazoa_SRP links to Rfam database...	0.91	0.89	0.92	84	44162	12	1	6	5	10
SRP_00301	Fungi_SRP links to Rfam database...	0.82	0.78	0.87	67	32563	14	1	9	4	19
SRP_00302	Fungi_SRP links to Rfam database...	0.27	0.23	0.32	19	41556	44	8	33	3	62
SRP_00308	Bacteria_large_SRP links to Rfam database...	0.74	0.68	0.81	60	36241	15	6	8	1	28
SRP_00317	Metazoa_SRP links to Rfam database...	0.96	0.93	0.99	91	45058	8	0	1	7	7
SRP_00321	Archaea_SRP links to Rfam database...	0.77	0.77	0.77	83	47478	27	2	23	2	25
SRP_00322	Archaea_SRP links to Rfam database...	0.85	0.87	0.83	95	48402	21	4	15	2	14
SRP_00323	Archaea_SRP links to Rfam database...	0.91	0.90	0.91	96	47173	12	0	9	3	11
SRP_00328	Metazoa_SRP links to Rfam database...	0.65	0.65	0.66	55	39538	29	8	20	1	30
SRP_00329	Metazoa_SRP links to Rfam database...	0.63	0.61	0.65	52	39823	31	5	23	3	33
SRP_00330	Archaea_SRP links to Rfam database...	0.60	0.62	0.57	59	49983	50	4	40	6	36
SRP_00331	Metazoa_SRP links to Rfam database...	0.52	0.53	0.51	46	37584	47	9	36	2	41
SRP_00332	Archaea_SRP links to Rfam database...	0.92	0.92	0.92	98	50296	10	2	7	1	8
SRP_00335	Bacteria_large_SRP links to Rfam database...	0.32	0.44	0.23	17	35172	76	26	30	20	22
SRP_00337	Bacteria_large_SRP links to Rfam database...	0.76	0.74	0.78	67	35425	21	3	16	2	24
SRP_00339	Archaea_SRP links to Rfam database...	0.68	0.69	0.67	65	44454	37	5	27	5	29
SRP_00340	Metazoa_SRP links to Rfam database...	0.54	0.57	0.51	47	41236	48	9	36	3	35
SRP_00347	Metazoa_SRP links to Rfam database...	0.78	0.78	0.79	75	46570	23	5	15	3	21
SRP_00361	Plant_SRP links to Rfam database...	0.80	0.80	0.81	72	41816	24	2	15	7	18
SRP_00368	Metazoa_SRP links to Rfam database...	0.93	0.94	0.93	92	43857	7	4	3	0	6
SRP_00371	Fungi_SRP links to Rfam database...	0.80	0.80	0.80	66	36232	21	2	15	4	16
SRP_00382	Fungi_SRP links to Rfam database...	0.66	0.64	0.68	109	141617	62	6	46	10	61
TMR_00173	tmRNA links to Rfam database...	0.50	0.40	0.63	17	42168	32	2	8	22	25
TMR_00357	tmRNA links to Rfam database...	0.52	0.49	0.56	45	82948	53	16	19	18	47
TMR_00601	tmRNA links to Rfam database...	0.61	0.48	0.77	20	58970	37	0	6	31	22
TMR_00696	tmRNA links to Rfam database...	0.51	0.50	0.53	57	84970	62	9	42	11	57

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Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.

Table of contents:

Overview

Performance plots

Performance of CentroidAlifold(seed) - scored higher in this pairwise comparison

1. Total counts & total scores for CentroidAlifold(seed)

2. Individual counts for CentroidAlifold(seed) [ download as .csv ]

Performance of IPknot - scored lower in this pairwise comparison

1. Total counts & total scores for IPknot

2. Individual counts for IPknot [ download as .csv ]