CompaRNA - on-line benchmarks of RNA structure prediction methods

Laboratory of Structural Bioinformatics @ Adam Mickiewicz University in Poznan

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Overview

Metric	CentroidHomfold‑LAST		Carnac(20)
MCC	0.710	>	0.378
Average MCC ± 95% Confidence Intervals	0.704 ± 0.014	>	0.309 ± 0.028
Sensitivity	0.561	>	0.166
Positive Predictive Value	0.898	>	0.863
Total TP	14094	>	4176
Total TN	14158506	<	14169356
Total FP	2165	>	830
Total FP CONTRA	251	>	85
Total FP INCONS	1342	>	576
Total FP COMP	572	>	169
Total FN	11032	<	20950
P-value	3.56938820447e-08

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Performance plots

Comparison of performance of CentroidHomfold-LAST and Carnac(20). Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data (individual counts for CentroidHomfold‑LAST and Carnac(20)).
Average Matthews Correlation Coefficients (MCC) with 95% confidence intervals (CIs) were plotted for different RNA families, for which at least 3 members were present in the benchmarking dataset. 'n' denotes the number of MCCs used to calculate the average and CI. See tables below for raw data (individual counts for CentroidHomfold‑LAST and Carnac(20)).
Comparison of average Matthews Correlation Coefficients (MCCs) for CentroidHomfold-LAST and Carnac(20). The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data (individual counts for CentroidHomfold‑LAST and Carnac(20)).

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Performance of CentroidHomfold‑LAST - scored higher in this pairwise comparison

1. Total counts & total scores for CentroidHomfold‑LAST

Total Base Pair Counts
Total TP	14094
Total TN	14158506
Total FP	2165
Total FP CONTRA	251
Total FP INCONS	1342
Total FP COMP	572
Total FN	11032

Total Scores
MCC	0.710
Average MCC ± 95% Confidence Intervals	0.704 ± 0.014
Sensitivity	0.561
Positive Predictive Value	0.898
Nr of predictions	245

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2. Individual counts for CentroidHomfold‑LAST [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00004	RNaseP_bact_a links to Rfam database...	0.66	0.46	0.94	45	47847	3	1	2	0	52
ASE_00005	RNaseP_bact_a links to Rfam database...	0.81	0.67	0.98	78	57890	3	0	2	1	39
ASE_00006	RNaseP_bact_a links to Rfam database...	0.67	0.52	0.87	48	47531	7	1	6	0	45
ASE_00007	RNaseP_bact_a links to Rfam database...	0.79	0.65	0.95	72	59609	9	0	4	5	38
ASE_00012	RNaseP_bact_a links to Rfam database...	0.76	0.62	0.94	76	73839	7	2	3	2	47
ASE_00018	RNaseP_bact_a links to Rfam database...	0.82	0.70	0.95	94	80502	7	0	5	2	40
ASE_00020	RNaseP_bact_a links to Rfam database...	0.66	0.48	0.91	60	73854	7	1	5	1	66
ASE_00021	RNaseP_bact_a links to Rfam database...	0.67	0.47	0.96	75	104118	5	0	3	2	85
ASE_00022	RNaseP_bact_b links to Rfam database...	0.67	0.52	0.87	65	82953	13	0	10	3	59
ASE_00028	RNaseP_bact_b links to Rfam database...	0.70	0.53	0.92	67	84593	8	0	6	2	59
ASE_00035	RNaseP_bact_a links to Rfam database...	0.65	0.44	0.95	52	70445	8	1	2	5	66
ASE_00037	RNaseP_bact_a links to Rfam database...	0.78	0.65	0.94	72	59263	8	0	5	3	38
ASE_00038	RNaseP_bact_a links to Rfam database...	0.79	0.66	0.94	67	53557	5	1	3	1	34
ASE_00040	RNaseP_bact_a links to Rfam database...	0.64	0.44	0.94	59	78940	5	2	2	1	74
ASE_00041	RNaseP_bact_a links to Rfam database...	0.73	0.56	0.95	61	57566	7	0	3	4	47
ASE_00042	RNaseP_bact_a links to Rfam database...	0.74	0.58	0.93	84	90010	6	1	5	0	61
ASE_00044	RNaseP_bact_a links to Rfam database...	0.82	0.70	0.97	73	54540	3	0	2	1	32
ASE_00045	RNaseP_bact_b links to Rfam database...	0.53	0.33	0.87	26	47248	4	0	4	0	54
ASE_00064	RNaseP_bact_a links to Rfam database...	0.75	0.61	0.93	54	45393	8	0	4	4	35
ASE_00068	RNaseP_bact_a links to Rfam database...	0.70	0.49	1.00	42	37633	0	0	0	0	43
ASE_00074	RNaseP_bact_a links to Rfam database...	0.76	0.62	0.94	74	67817	7	1	4	2	45
ASE_00075	RNaseP_bact_a links to Rfam database...	0.62	0.42	0.93	68	108738	7	1	4	2	94
ASE_00077	RNaseP_bact_a links to Rfam database...	0.77	0.65	0.90	56	45088	7	2	4	1	30
ASE_00078	RNaseP_bact_a links to Rfam database...	0.82	0.72	0.94	60	43007	5	1	3	1	23
ASE_00080	RNaseP_bact_a links to Rfam database...	0.48	0.30	0.77	37	71583	11	0	11	0	86
ASE_00081	RNaseP_bact_a links to Rfam database...	0.71	0.55	0.93	53	49713	5	1	3	1	44
ASE_00082	RNaseP_bact_a links to Rfam database...	0.44	0.22	0.89	25	70472	3	0	3	0	91
ASE_00083	RNaseP_bact_a links to Rfam database...	0.72	0.56	0.93	62	62414	6	1	4	1	48
ASE_00084	RNaseP_bact_a links to Rfam database...	0.73	0.62	0.87	61	53558	11	2	7	2	38
ASE_00087	RNaseP_bact_a links to Rfam database...	0.58	0.44	0.77	63	88328	21	2	17	2	81
ASE_00090	RNaseP_bact_a links to Rfam database...	0.69	0.60	0.78	61	55533	17	1	16	0	40
ASE_00092	RNaseP_bact_a links to Rfam database...	0.68	0.49	0.96	55	63489	4	0	2	2	58
ASE_00099	RNaseP_bact_a links to Rfam database...	0.82	0.68	0.98	82	64536	3	1	1	1	38
ASE_00104	RNaseP_bact_a links to Rfam database...	0.80	0.69	0.93	82	64173	7	1	5	1	37
ASE_00105	RNaseP_bact_a links to Rfam database...	0.61	0.43	0.87	48	64206	9	0	7	2	63
ASE_00107	RNaseP_bact_a links to Rfam database...	0.78	0.72	0.84	91	73045	19	1	16	2	36
ASE_00114	RNaseP_bact_b links to Rfam database...	0.51	0.36	0.72	28	45412	14	0	11	3	49
ASE_00115	RNaseP_bact_a links to Rfam database...	0.68	0.50	0.93	51	54560	7	0	4	3	50
ASE_00118	RNaseP_bact_a links to Rfam database...	0.52	0.27	1.00	28	60698	2	0	0	2	74
ASE_00119	RNaseP_bact_a links to Rfam database...	0.34	0.13	0.88	14	62819	2	0	2	0	94
ASE_00123	RNaseP_bact_a links to Rfam database...	0.64	0.46	0.89	39	38459	6	1	4	1	46
ASE_00125	RNaseP_bact_a links to Rfam database...	0.68	0.50	0.92	44	39292	5	1	3	1	44
ASE_00126	RNaseP_bact_a links to Rfam database...	0.75	0.68	0.82	56	40402	13	1	11	1	26
ASE_00128	RNaseP_bact_a links to Rfam database...	0.72	0.56	0.93	56	53241	4	1	3	0	44
ASE_00129	RNaseP_bact_a links to Rfam database...	0.74	0.64	0.87	71	62753	13	1	10	2	40
ASE_00131	RNaseP_bact_a links to Rfam database...	0.63	0.45	0.88	38	39297	9	1	4	4	47
ASE_00134	RNaseP_bact_a links to Rfam database...	0.74	0.61	0.91	58	50339	7	1	5	1	37
ASE_00135	RNaseP_bact_a links to Rfam database...	0.64	0.46	0.89	50	63134	7	1	5	1	59
ASE_00136	RNaseP_bact_a links to Rfam database...	0.75	0.61	0.92	56	48144	8	1	4	3	36
ASE_00137	RNaseP_bact_a links to Rfam database...	0.80	0.68	0.93	67	48444	5	1	4	0	31
ASE_00138	RNaseP_bact_a links to Rfam database...	0.80	0.65	0.98	53	40416	2	0	1	1	28
ASE_00140	RNaseP_bact_a links to Rfam database...	0.66	0.47	0.92	59	70812	7	1	4	2	66
ASE_00142	RNaseP_bact_a links to Rfam database...	0.80	0.70	0.92	85	67069	8	3	4	1	37
ASE_00146	RNaseP_bact_a links to Rfam database...	0.68	0.54	0.86	67	70798	12	1	10	1	57
ASE_00153	RNaseP_nuc links to Rfam database...	0.54	0.48	0.60	35	57572	43	2	21	20	38
ASE_00161	RNaseP_bact_b links to Rfam database...	0.71	0.53	0.96	46	53580	2	0	2	0	41
ASE_00163	RNaseP_bact_a links to Rfam database...	0.72	0.54	0.96	50	53249	2	0	2	0	43
ASE_00165	RNaseP_bact_a links to Rfam database...	0.67	0.50	0.89	51	52918	6	1	5	0	50
ASE_00170	RNaseP_bact_a links to Rfam database...	0.70	0.55	0.89	51	48771	6	0	6	0	42
ASE_00171	RNaseP_bact_a links to Rfam database...	0.72	0.57	0.92	54	48457	7	1	4	2	40
ASE_00172	RNaseP_bact_a links to Rfam database...	0.69	0.49	0.98	52	58943	2	0	1	1	54
ASE_00174	RNaseP_bact_a links to Rfam database...	0.66	0.47	0.94	51	61021	3	1	2	0	58
ASE_00175	RNaseP_bact_a links to Rfam database...	0.53	0.42	0.66	45	59963	24	3	20	1	62
ASE_00179	RNaseP_bact_a links to Rfam database...	0.71	0.52	0.96	44	44207	2	1	1	0	40
ASE_00180	RNaseP_bact_a links to Rfam database...	0.70	0.53	0.91	53	51302	6	0	5	1	47
ASE_00181	RNaseP_bact_a links to Rfam database...	0.71	0.54	0.95	57	57570	5	0	3	2	49
ASE_00182	RNaseP_bact_a links to Rfam database...	0.55	0.35	0.86	48	84199	8	1	7	0	88
ASE_00183	RNaseP_bact_a links to Rfam database...	0.67	0.47	0.96	53	61370	3	0	2	1	60
ASE_00184	RNaseP_bact_a links to Rfam database...	0.69	0.58	0.83	59	54544	13	2	10	1	43
ASE_00185	RNaseP_bact_a links to Rfam database...	0.62	0.41	0.95	52	73481	4	1	2	1	76
ASE_00186	RNaseP_bact_a links to Rfam database...	0.79	0.73	0.86	96	78892	16	1	14	1	36
ASE_00190	RNaseP_bact_b links to Rfam database...	0.46	0.23	0.91	21	45428	3	0	2	1	69
ASE_00197	RNaseP_bact_a links to Rfam database...	0.74	0.64	0.86	93	89145	15	1	14	0	52
ASE_00198	RNaseP_bact_a links to Rfam database...	0.80	0.68	0.96	69	52578	3	1	2	0	33
ASE_00203	RNaseP_bact_a links to Rfam database...	0.82	0.70	0.96	67	46595	4	1	2	1	29
ASE_00212	RNaseP_bact_a links to Rfam database...	0.75	0.65	0.86	96	93849	16	1	15	0	52
ASE_00214	RNaseP_bact_a links to Rfam database...	0.69	0.59	0.80	61	56204	17	2	13	2	42
ASE_00215	RNaseP_bact_a links to Rfam database...	0.62	0.40	0.95	40	48474	3	1	1	1	59
ASE_00216	RNaseP_bact_a links to Rfam database...	0.82	0.71	0.95	58	39279	3	0	3	0	24
ASE_00217	RNaseP_bact_a links to Rfam database...	0.67	0.56	0.82	50	40409	14	1	10	3	40
ASE_00221	RNaseP_bact_a links to Rfam database...	0.75	0.61	0.93	71	64544	6	1	4	1	46
ASE_00228	RNaseP_bact_a links to Rfam database...	0.79	0.69	0.92	59	46907	6	2	3	1	27
ASE_00229	RNaseP_bact_a links to Rfam database...	0.79	0.69	0.90	60	42419	7	1	6	0	27
ASE_00231	RNaseP_bact_a links to Rfam database...	0.76	0.63	0.92	60	47830	5	1	4	0	36
ASE_00232	RNaseP_bact_a links to Rfam database...	0.85	0.75	0.95	63	38437	3	2	1	0	21
ASE_00234	RNaseP_bact_a links to Rfam database...	0.61	0.42	0.90	54	75406	8	1	5	2	75
ASE_00238	RNaseP_bact_a links to Rfam database...	0.57	0.37	0.89	42	64214	5	0	5	0	72
ASE_00241	RNaseP_bact_a links to Rfam database...	0.73	0.64	0.84	56	43889	12	2	9	1	31
ASE_00242	RNaseP_bact_a links to Rfam database...	0.81	0.71	0.93	79	60990	7	0	6	1	33
ASE_00248	RNaseP_bact_a links to Rfam database...	0.82	0.71	0.94	81	62395	6	0	5	1	33
ASE_00254	RNaseP_bact_a links to Rfam database...	0.84	0.74	0.95	61	36792	4	2	1	1	21
ASE_00255	RNaseP_bact_a links to Rfam database...	0.73	0.57	0.94	74	74612	5	0	5	0	56
ASE_00257	RNaseP_bact_a links to Rfam database...	0.82	0.68	0.99	66	50973	2	0	1	1	31
ASE_00263	RNaseP_bact_a links to Rfam database...	0.69	0.48	0.98	58	70441	2	0	1	1	62
ASE_00267	RNaseP_bact_a links to Rfam database...	0.72	0.66	0.79	58	45077	17	2	13	2	30
ASE_00270	RNaseP_bact_a links to Rfam database...	0.52	0.27	1.00	35	72355	0	0	0	0	93
ASE_00274	RNaseP_bact_a links to Rfam database...	0.66	0.47	0.92	48	55559	5	0	4	1	55
ASE_00277	RNaseP_bact_a links to Rfam database...	0.64	0.56	0.74	51	48136	21	3	15	3	40
ASE_00279	RNaseP_bact_a links to Rfam database...	0.72	0.58	0.89	59	53235	8	3	4	1	42
ASE_00280	RNaseP_bact_a links to Rfam database...	0.75	0.58	0.97	57	51944	3	0	2	1	41
ASE_00281	RNaseP_bact_a links to Rfam database...	0.81	0.68	0.97	60	44489	2	1	1	0	28
ASE_00282	RNaseP_bact_a links to Rfam database...	0.60	0.40	0.89	51	77758	7	3	3	1	76
ASE_00283	RNaseP_bact_a links to Rfam database...	0.71	0.56	0.91	60	61710	7	2	4	1	47
ASE_00284	RNaseP_bact_a links to Rfam database...	0.68	0.51	0.90	55	58250	7	2	4	1	53
ASE_00285	RNaseP_bact_a links to Rfam database...	0.63	0.44	0.89	54	68945	8	3	4	1	68
ASE_00286	RNaseP_bact_a links to Rfam database...	0.75	0.59	0.95	54	46608	3	1	2	0	38
ASE_00287	RNaseP_bact_a links to Rfam database...	0.66	0.49	0.91	50	54891	6	0	5	1	53
ASE_00292	RNaseP_bact_a links to Rfam database...	0.55	0.43	0.71	59	81727	25	3	21	1	79
ASE_00294	RNaseP_bact_a links to Rfam database...	0.75	0.60	0.94	103	114372	8	1	5	2	68
ASE_00296	RNaseP_bact_a links to Rfam database...	0.71	0.53	0.96	77	91726	4	0	3	1	68
ASE_00297	RNaseP_bact_a links to Rfam database...	0.68	0.47	0.98	46	52928	1	0	1	0	52
ASE_00298	RNaseP_bact_a links to Rfam database...	0.62	0.39	1.00	44	67484	1	0	0	1	69
ASE_00305	RNaseP_bact_b links to Rfam database...	0.81	0.71	0.94	60	54551	11	0	4	7	25
ASE_00318	RNaseP_bact_b links to Rfam database...	0.55	0.35	0.87	41	80153	12	0	6	6	77
ASE_00321	RNaseP_bact_b links to Rfam database...	0.81	0.67	0.98	59	54555	4	0	1	3	29
ASE_00328	RNaseP_bact_b links to Rfam database...	0.80	0.66	0.97	74	72695	9	0	2	7	38
ASE_00332	RNaseP_bact_a links to Rfam database...	0.80	0.71	0.89	98	81700	14	1	11	2	40
ASE_00335	RNaseP_bact_b links to Rfam database...	0.80	0.66	0.97	76	75388	8	0	2	6	40
ASE_00340	RNaseP_bact_a links to Rfam database...	0.63	0.48	0.84	41	46007	11	6	2	3	44
ASE_00342	RNaseP_bact_a links to Rfam database...	0.82	0.75	0.90	86	62385	12	1	9	2	29
ASE_00353	RNaseP_bact_a links to Rfam database...	0.79	0.69	0.91	74	57889	7	1	6	0	33
ASE_00361	RNaseP_bact_a links to Rfam database...	0.65	0.43	0.96	55	75409	4	0	2	2	72
ASE_00362	RNaseP_bact_a links to Rfam database...	0.80	0.69	0.93	63	48137	7	1	4	2	28
ASE_00363	RNaseP_bact_a links to Rfam database...	0.75	0.64	0.88	60	51292	9	1	7	1	34
ASE_00364	RNaseP_bact_a links to Rfam database...	0.79	0.67	0.93	70	54210	6	1	4	1	35
ASE_00366	RNaseP_bact_a links to Rfam database...	0.68	0.49	0.94	48	58602	4	0	3	1	50
ASE_00367	RNaseP_bact_a links to Rfam database...	0.78	0.70	0.87	60	43002	11	1	8	2	26
ASE_00369	RNaseP_bact_a links to Rfam database...	0.79	0.64	0.97	68	55875	2	0	2	0	39
ASE_00370	RNaseP_bact_a links to Rfam database...	0.78	0.67	0.90	56	41843	7	1	5	1	28
ASE_00372	RNaseP_bact_a links to Rfam database...	0.70	0.54	0.90	54	51943	6	3	3	0	46
ASE_00374	RNaseP_bact_a links to Rfam database...	0.77	0.64	0.93	56	44790	4	2	2	0	32
ASE_00376	RNaseP_bact_a links to Rfam database...	0.65	0.51	0.83	54	56888	15	0	11	4	51
ASE_00377	RNaseP_bact_a links to Rfam database...	0.75	0.62	0.92	66	57558	7	0	6	1	41
ASE_00379	RNaseP_bact_a links to Rfam database...	0.75	0.63	0.90	56	45994	6	2	4	0	33
ASE_00382	RNaseP_bact_a links to Rfam database...	0.78	0.69	0.89	58	41840	8	1	6	1	26
ASE_00383	RNaseP_bact_a links to Rfam database...	0.79	0.66	0.95	69	54542	5	1	3	1	36
ASE_00384	RNaseP_bact_a links to Rfam database...	0.78	0.68	0.90	63	48446	8	1	6	1	29
ASE_00386	RNaseP_bact_a links to Rfam database...	0.70	0.56	0.87	54	50341	9	1	7	1	42
ASE_00387	RNaseP_bact_a links to Rfam database...	0.63	0.45	0.87	47	55891	8	1	6	1	57
ASE_00388	RNaseP_bact_a links to Rfam database...	0.78	0.69	0.90	61	45685	9	1	6	2	28
ASE_00390	RNaseP_bact_a links to Rfam database...	0.81	0.72	0.91	61	42128	8	1	5	2	24
ASE_00393	RNaseP_bact_a links to Rfam database...	0.70	0.57	0.87	53	47834	9	1	7	1	40
ASE_00394	RNaseP_bact_a links to Rfam database...	0.72	0.62	0.83	58	46901	14	1	11	2	35
ASE_00395	RNaseP_bact_a links to Rfam database...	0.78	0.71	0.86	60	41546	12	1	9	2	24
ASE_00396	RNaseP_bact_a links to Rfam database...	0.78	0.71	0.86	59	41547	12	2	8	2	24
ASE_00397	RNaseP_bact_a links to Rfam database...	0.80	0.69	0.92	72	54537	7	1	5	1	33
ASE_00398	RNaseP_bact_a links to Rfam database...	0.68	0.53	0.87	55	55882	11	1	7	3	49
ASE_00400	RNaseP_bact_a links to Rfam database...	0.67	0.45	0.98	48	57921	1	0	1	0	58
ASE_00401	RNaseP_bact_a links to Rfam database...	0.60	0.37	0.98	47	76980	2	0	1	1	79
ASE_00402	RNaseP_bact_a links to Rfam database...	0.79	0.68	0.91	58	42422	8	1	5	2	27
ASE_00403	RNaseP_bact_a links to Rfam database...	0.75	0.63	0.91	67	55871	7	1	6	0	40
ASE_00404	RNaseP_bact_a links to Rfam database...	0.81	0.69	0.94	59	43008	5	0	4	1	26
ASE_00406	RNaseP_bact_a links to Rfam database...	0.73	0.62	0.85	58	48760	12	1	9	2	36
ASE_00411	RNaseP_bact_a links to Rfam database...	0.64	0.44	0.93	39	49413	3	0	3	0	50
ASE_00412	RNaseP_bact_a links to Rfam database...	0.62	0.40	0.98	42	58268	3	0	1	2	63
ASE_00413	RNaseP_bact_a links to Rfam database...	0.72	0.54	0.96	44	44505	2	0	2	0	37
ASE_00415	RNaseP_bact_a links to Rfam database...	0.55	0.34	0.90	35	54907	4	0	4	0	68
ASE_00416	RNaseP_bact_a links to Rfam database...	0.58	0.36	0.92	46	77371	5	1	3	1	81
ASE_00419	RNaseP_bact_a links to Rfam database...	0.67	0.48	0.94	49	54894	3	1	2	0	54
ASE_00422	RNaseP_bact_a links to Rfam database...	0.72	0.55	0.95	52	46916	4	0	3	1	42
ASE_00423	RNaseP_bact_a links to Rfam database...	0.76	0.59	0.98	64	56888	2	1	0	1	45
ASE_00427	RNaseP_nuc links to Rfam database...	0.48	0.43	0.54	20	40718	27	1	16	10	26
ASE_00428	RNaseP_bact_a links to Rfam database...	0.60	0.39	0.91	49	76582	6	1	4	1	76
ASE_00430	RNaseP_bact_a links to Rfam database...	0.77	0.61	0.98	59	46911	3	0	1	2	38
ASE_00437	RNaseP_bact_a links to Rfam database...	0.55	0.47	0.66	63	79305	35	1	32	2	72
ASE_00441	RNaseP_bact_a links to Rfam database...	0.63	0.44	0.91	49	64207	9	0	5	4	63
ASE_00448	RNaseP_bact_a links to Rfam database...	0.75	0.63	0.88	71	64180	11	1	9	1	41
ASE_00451	RNaseP_bact_a links to Rfam database...	0.77	0.72	0.83	90	70768	20	1	17	2	35
RFA_00599	Telomerase-vert links to Rfam database...	0.65	0.46	0.91	51	101419	10	3	2	5	60
RFA_00601	Telomerase-vert links to Rfam database...	0.86	0.82	0.91	93	99133	20	3	6	11	21
RFA_00602	Telomerase-vert links to Rfam database...	0.85	0.80	0.90	93	101372	20	3	7	10	23
SRP_00006	Metazoa_SRP links to Rfam database...	0.96	0.92	1.00	93	45660	2	0	0	2	8
SRP_00011	Plant_SRP links to Rfam database...	0.81	0.77	0.86	80	46267	13	0	13	0	24
SRP_00015	Plant_SRP links to Rfam database...	0.92	0.86	0.99	85	46274	2	0	1	1	14
SRP_00024	Bacteria_large_SRP links to Rfam database...	0.56	0.34	0.91	30	37642	3	0	3	0	57
SRP_00026	Bacteria_large_SRP links to Rfam database...	0.56	0.34	0.91	30	36823	3	0	3	0	58
SRP_00027	Bacteria_large_SRP links to Rfam database...	0.56	0.34	0.91	30	37095	3	0	3	0	57
SRP_00030	Bacteria_large_SRP links to Rfam database...	0.57	0.35	0.91	31	36822	3	0	3	0	57
SRP_00031	Bacteria_large_SRP links to Rfam database...	0.55	0.34	0.91	30	36282	3	0	3	0	59
SRP_00037	Bacteria_large_SRP links to Rfam database...	0.57	0.36	0.91	31	36551	3	0	3	0	56
SRP_00050	Metazoa_SRP links to Rfam database...	0.97	0.96	0.99	95	44754	5	0	1	4	4
SRP_00066	Metazoa_SRP links to Rfam database...	0.82	0.76	0.89	76	45366	11	0	9	2	24
SRP_00086	Metazoa_SRP links to Rfam database...	0.93	0.93	0.94	93	44154	10	0	6	4	7
SRP_00088	Bacteria_large_SRP links to Rfam database...	0.56	0.35	0.91	31	34157	3	0	3	0	58
SRP_00089	Bacteria_large_SRP links to Rfam database...	0.55	0.33	0.91	30	35745	3	0	3	0	60
SRP_00090	Bacteria_large_SRP links to Rfam database...	0.56	0.34	0.91	31	35477	3	0	3	0	59
SRP_00102	Metazoa_SRP links to Rfam database...	0.82	0.79	0.85	80	44457	17	5	9	3	21
SRP_00103	Metazoa_SRP links to Rfam database...	0.85	0.81	0.89	83	45358	12	1	9	2	19
SRP_00152	Plant_SRP links to Rfam database...	0.93	0.89	0.98	92	45659	3	0	2	1	11
SRP_00171	Metazoa_SRP links to Rfam database...	0.56	0.45	0.69	40	45393	18	1	17	0	48
SRP_00173	Bacteria_large_SRP links to Rfam database...	0.54	0.32	0.91	29	38194	3	0	3	0	61
SRP_00174	Bacteria_large_SRP links to Rfam database...	0.56	0.35	0.91	30	38748	3	0	3	0	56
SRP_00178	Plant_SRP links to Rfam database...	0.88	0.81	0.95	83	45666	6	0	4	2	19
SRP_00179	Plant_SRP links to Rfam database...	0.89	0.81	0.98	85	45969	6	0	2	4	20
SRP_00181	Plant_SRP links to Rfam database...	0.80	0.73	0.88	74	45972	12	0	10	2	28
SRP_00182	Plant_SRP links to Rfam database...	0.83	0.75	0.93	76	45974	8	0	6	2	25
SRP_00184	Plant_SRP links to Rfam database...	0.78	0.70	0.86	70	45975	15	0	11	4	30
SRP_00188	Plant_SRP links to Rfam database...	0.84	0.76	0.94	60	31061	6	0	4	2	19
SRP_00228	Metazoa_SRP links to Rfam database...	0.95	0.93	0.98	88	45361	8	0	2	6	7
SRP_00234	Bacteria_large_SRP links to Rfam database...	0.55	0.34	0.91	29	36283	3	0	3	0	57
SRP_00308	Bacteria_large_SRP links to Rfam database...	0.56	0.34	0.91	30	36282	3	0	3	0	58
SRP_00317	Metazoa_SRP links to Rfam database...	0.94	0.91	0.97	89	45058	10	0	3	7	9
SRP_00335	Bacteria_large_SRP links to Rfam database...	0.51	0.44	0.59	17	35216	17	7	5	5	22
SRP_00337	Bacteria_large_SRP links to Rfam database...	0.55	0.33	0.91	30	35478	4	0	3	1	61
SRP_00347	Metazoa_SRP links to Rfam database...	0.94	0.92	0.97	88	46574	8	0	3	5	8
SRP_00368	Metazoa_SRP links to Rfam database...	0.91	0.89	0.94	87	43863	9	0	6	3	11
TMR_00017	tmRNA links to Rfam database...	0.72	0.55	0.93	56	67101	8	0	4	4	46
TMR_00018	tmRNA links to Rfam database...	0.71	0.60	0.85	55	64555	14	2	8	4	37
TMR_00038	tmRNA links to Rfam database...	0.67	0.49	0.92	54	71194	7	3	2	2	56
TMR_00042	tmRNA links to Rfam database...	0.74	0.64	0.85	63	62761	15	1	10	4	35
TMR_00046	tmRNA links to Rfam database...	0.64	0.53	0.77	51	62769	20	3	12	5	45
TMR_00048	tmRNA links to Rfam database...	0.73	0.63	0.85	60	64909	18	2	9	7	35
TMR_00080	tmRNA links to Rfam database...	0.60	0.36	0.97	35	70464	1	0	1	0	61
TMR_00082	tmRNA links to Rfam database...	0.65	0.44	0.95	42	67852	3	0	2	1	54
TMR_00123	tmRNA links to Rfam database...	0.69	0.55	0.86	56	66365	14	0	9	5	45
TMR_00137	tmRNA links to Rfam database...	0.47	0.28	0.78	25	61043	12	1	6	5	64
TMR_00142	tmRNA links to Rfam database...	0.61	0.55	0.68	56	70794	33	7	19	7	46
TMR_00207	tmRNA links to Rfam database...	0.76	0.60	0.95	62	72325	7	0	3	4	41
TMR_00257	tmRNA links to Rfam database...	0.71	0.54	0.93	53	67104	10	0	4	6	45
TMR_00271	tmRNA links to Rfam database...	0.54	0.35	0.82	32	64222	15	3	4	8	59
TMR_00332	tmRNA links to Rfam database...	0.75	0.62	0.92	61	67095	10	0	5	5	38
TMR_00366	tmRNA links to Rfam database...	0.65	0.57	0.74	57	67819	31	5	15	11	43
TMR_00378	tmRNA links to Rfam database...	0.63	0.53	0.76	51	67829	26	6	10	10	46
TMR_00399	tmRNA links to Rfam database...	0.45	0.31	0.66	29	64936	25	7	8	10	65
TMR_00404	tmRNA links to Rfam database...	0.66	0.57	0.76	52	67460	27	3	13	11	40
TMR_00427	tmRNA links to Rfam database...	0.73	0.59	0.90	57	67465	11	5	1	5	40
TMR_00443	tmRNA links to Rfam database...	0.69	0.55	0.86	57	67095	13	1	8	4	47
TMR_00451	tmRNA links to Rfam database...	0.54	0.36	0.80	32	63506	12	3	5	4	57
TMR_00458	tmRNA links to Rfam database...	0.61	0.41	0.90	38	63504	7	3	1	3	55
TMR_00469	tmRNA links to Rfam database...	0.79	0.70	0.90	70	64542	11	4	4	3	30
TMR_00472	tmRNA links to Rfam database...	0.77	0.66	0.89	64	64548	13	5	3	5	33
TMR_00519	tmRNA links to Rfam database...	0.61	0.46	0.80	44	63135	20	2	9	9	51
TMR_00520	tmRNA links to Rfam database...	0.60	0.47	0.76	47	63128	24	3	12	9	52
TMR_00522	tmRNA links to Rfam database...	0.65	0.47	0.88	46	63138	14	2	4	8	51
TMR_00528	tmRNA links to Rfam database...	0.60	0.46	0.78	45	63132	22	4	9	9	52
TMR_00540	tmRNA links to Rfam database...	0.69	0.54	0.88	56	73472	11	2	6	3	48
TMR_00568	tmRNA links to Rfam database...	0.69	0.54	0.88	53	60666	15	0	7	8	46
TMR_00571	tmRNA links to Rfam database...	0.66	0.49	0.89	49	60671	14	1	5	8	50
TMR_00580	tmRNA links to Rfam database...	0.65	0.49	0.88	49	60670	14	1	6	7	51
TMR_00584	tmRNA links to Rfam database...	0.72	0.57	0.92	55	61015	13	1	4	8	42
TMR_00586	tmRNA links to Rfam database...	0.70	0.56	0.89	54	61014	14	1	6	7	43
TMR_00616	tmRNA links to Rfam database...	0.76	0.63	0.91	62	67093	11	0	6	5	37
TMR_00699	tmRNA links to Rfam database...	0.76	0.63	0.91	64	67091	11	1	5	5	38
TMR_00702	tmRNA links to Rfam database...	0.77	0.65	0.90	65	67089	12	1	6	5	35
TMR_00703	tmRNA links to Rfam database...	0.78	0.66	0.92	65	67457	11	1	5	5	34

^top

Performance of Carnac(20) - scored lower in this pairwise comparison

1. Total counts & total scores for Carnac(20)

Total Base Pair Counts
Total TP	4176
Total TN	14169356
Total FP	830
Total FP CONTRA	85
Total FP INCONS	576
Total FP COMP	169
Total FN	20950

Total Scores
MCC	0.378
Average MCC ± 95% Confidence Intervals	0.309 ± 0.028
Sensitivity	0.166
Positive Predictive Value	0.863
Nr of predictions	245

^top

2. Individual counts for Carnac(20) [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00004	RNaseP_bact_a links to Rfam database...	0.51	0.26	1.00	25	47870	0	0	0	0	72
ASE_00005	RNaseP_bact_a links to Rfam database...	0.45	0.21	0.96	25	57944	1	1	0	0	92
ASE_00006	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	47586	0	0	0	0	93
ASE_00007	RNaseP_bact_a links to Rfam database...	0.40	0.17	0.95	19	59665	1	0	1	0	91
ASE_00012	RNaseP_bact_a links to Rfam database...	0.60	0.47	0.77	58	73845	21	1	16	4	65
ASE_00018	RNaseP_bact_a links to Rfam database...	0.53	0.33	0.86	44	80550	8	1	6	1	90
ASE_00020	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	73920	0	0	0	0	126
ASE_00021	RNaseP_bact_a links to Rfam database...	0.47	0.33	0.69	52	104121	28	1	22	5	108
ASE_00022	RNaseP_bact_b links to Rfam database...	0.54	0.33	0.87	41	82981	7	0	6	1	83
ASE_00028	RNaseP_bact_b links to Rfam database...	0.45	0.20	1.00	25	84641	0	0	0	0	101
ASE_00035	RNaseP_bact_a links to Rfam database...	0.50	0.31	0.80	37	70454	12	1	8	3	81
ASE_00037	RNaseP_bact_a links to Rfam database...	0.27	0.07	1.00	8	59332	0	0	0	0	102
ASE_00038	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	53628	0	0	0	0	101
ASE_00040	RNaseP_bact_a links to Rfam database...	0.42	0.17	1.00	23	78980	4	0	0	4	110
ASE_00041	RNaseP_bact_a links to Rfam database...	0.40	0.19	0.84	21	57605	4	0	4	0	87
ASE_00042	RNaseP_bact_a links to Rfam database...	0.25	0.06	1.00	9	90091	0	0	0	0	136
ASE_00044	RNaseP_bact_a links to Rfam database...	0.42	0.20	0.88	21	54591	7	0	3	4	84
ASE_00045	RNaseP_bact_b links to Rfam database...	0.37	0.14	1.00	11	47267	0	0	0	0	69
ASE_00064	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	45451	0	0	0	0	89
ASE_00068	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	37675	0	0	0	0	85
ASE_00074	RNaseP_bact_a links to Rfam database...	0.45	0.21	0.96	25	67870	1	1	0	0	94
ASE_00075	RNaseP_bact_a links to Rfam database...	0.57	0.36	0.89	59	108745	11	1	6	4	103
ASE_00077	RNaseP_bact_a links to Rfam database...	0.34	0.13	0.92	11	45138	1	0	1	0	75
ASE_00078	RNaseP_bact_a links to Rfam database...	0.50	0.25	1.00	21	43050	1	0	0	1	62
ASE_00080	RNaseP_bact_a links to Rfam database...	0.10	0.03	0.31	4	71618	9	0	9	0	119
ASE_00081	RNaseP_bact_a links to Rfam database...	0.15	0.05	0.45	5	49759	7	0	6	1	92
ASE_00082	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	70500	0	0	0	0	116
ASE_00083	RNaseP_bact_a links to Rfam database...	0.29	0.08	1.00	9	62472	0	0	0	0	101
ASE_00084	RNaseP_bact_a links to Rfam database...	0.40	0.16	1.00	16	53612	1	0	0	1	83
ASE_00087	RNaseP_bact_a links to Rfam database...	0.19	0.03	1.00	5	88405	1	0	0	1	139
ASE_00090	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	55611	0	0	0	0	101
ASE_00092	RNaseP_bact_a links to Rfam database...	0.39	0.17	0.90	19	63525	3	0	2	1	94
ASE_00099	RNaseP_bact_a links to Rfam database...	0.45	0.21	0.96	25	64594	1	1	0	0	95
ASE_00104	RNaseP_bact_a links to Rfam database...	0.42	0.19	0.92	23	64236	2	1	1	0	96
ASE_00105	RNaseP_bact_a links to Rfam database...	0.36	0.20	0.67	22	64228	12	0	11	1	89
ASE_00107	RNaseP_bact_a links to Rfam database...	0.54	0.35	0.83	44	73100	10	1	8	1	83
ASE_00114	RNaseP_bact_b links to Rfam database...	0.21	0.10	0.44	8	45433	10	0	10	0	69
ASE_00115	RNaseP_bact_a links to Rfam database...	0.19	0.05	0.71	5	54608	3	0	2	1	96
ASE_00118	RNaseP_bact_a links to Rfam database...	0.33	0.11	1.00	11	60715	1	0	0	1	91
ASE_00119	RNaseP_bact_a links to Rfam database...	0.36	0.13	1.00	14	62821	0	0	0	0	94
ASE_00123	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	38503	0	0	0	0	85
ASE_00125	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	39340	0	0	0	0	88
ASE_00126	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	40470	0	0	0	0	82
ASE_00128	RNaseP_bact_a links to Rfam database...	0.26	0.07	1.00	7	53294	0	0	0	0	93
ASE_00129	RNaseP_bact_a links to Rfam database...	0.30	0.11	0.86	12	62821	2	0	2	0	99
ASE_00131	RNaseP_bact_a links to Rfam database...	0.31	0.09	1.00	8	39332	0	0	0	0	77
ASE_00134	RNaseP_bact_a links to Rfam database...	0.25	0.06	1.00	6	50397	0	0	0	0	89
ASE_00135	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	63190	0	0	0	0	109
ASE_00136	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	48205	0	0	0	0	92
ASE_00137	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	48516	0	0	0	0	98
ASE_00138	RNaseP_bact_a links to Rfam database...	0.22	0.05	1.00	4	40466	0	0	0	0	77
ASE_00140	RNaseP_bact_a links to Rfam database...	0.35	0.14	0.86	18	70855	3	0	3	0	107
ASE_00142	RNaseP_bact_a links to Rfam database...	0.41	0.17	0.95	21	67139	1	1	0	0	101
ASE_00146	RNaseP_bact_a links to Rfam database...	0.40	0.18	0.92	22	70852	2	0	2	0	102
ASE_00153	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	57626	4	1	3	0	73
ASE_00161	RNaseP_bact_b links to Rfam database...	0.61	0.41	0.90	36	53588	4	0	4	0	51
ASE_00163	RNaseP_bact_a links to Rfam database...	0.17	0.04	0.67	4	53295	2	0	2	0	89
ASE_00165	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	52975	0	0	0	0	101
ASE_00170	RNaseP_bact_a links to Rfam database...	0.52	0.27	1.00	25	48803	1	0	0	1	68
ASE_00171	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	48512	4	0	4	0	94
ASE_00172	RNaseP_bact_a links to Rfam database...	0.27	0.08	1.00	8	58988	0	0	0	0	98
ASE_00174	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	61075	0	0	0	0	109
ASE_00175	RNaseP_bact_a links to Rfam database...	0.20	0.05	0.83	5	60025	2	0	1	1	102
ASE_00179	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	44253	0	0	0	0	84
ASE_00180	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	51360	0	0	0	0	100
ASE_00181	RNaseP_bact_a links to Rfam database...	0.22	0.05	1.00	5	57625	0	0	0	0	101
ASE_00182	RNaseP_bact_a links to Rfam database...	0.19	0.04	0.86	6	84248	1	0	1	0	130
ASE_00183	RNaseP_bact_a links to Rfam database...	0.34	0.14	0.80	16	61405	4	0	4	0	97
ASE_00184	RNaseP_bact_a links to Rfam database...	0.33	0.11	1.00	11	54604	1	0	0	1	91
ASE_00185	RNaseP_bact_a links to Rfam database...	0.37	0.14	1.00	18	73518	0	0	0	0	110
ASE_00186	RNaseP_bact_a links to Rfam database...	0.45	0.22	0.94	29	78972	7	1	1	5	103
ASE_00190	RNaseP_bact_b links to Rfam database...	0.29	0.11	0.77	10	45438	6	0	3	3	80
ASE_00197	RNaseP_bact_a links to Rfam database...	0.33	0.12	0.94	17	89235	5	1	0	4	128
ASE_00198	RNaseP_bact_a links to Rfam database...	0.16	0.04	0.67	4	52644	2	0	2	0	98
ASE_00203	RNaseP_bact_a links to Rfam database...	0.35	0.13	1.00	12	46653	0	0	0	0	84
ASE_00212	RNaseP_bact_a links to Rfam database...	0.45	0.24	0.85	35	93920	11	1	5	5	113
ASE_00214	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	56280	0	0	0	0	103
ASE_00215	RNaseP_bact_a links to Rfam database...	0.19	0.07	0.54	7	48503	6	0	6	0	92
ASE_00216	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	39340	0	0	0	0	82
ASE_00217	RNaseP_bact_a links to Rfam database...	0.42	0.19	0.94	17	40452	1	1	0	0	73
ASE_00221	RNaseP_bact_a links to Rfam database...	0.36	0.15	0.89	17	64601	2	0	2	0	100
ASE_00228	RNaseP_bact_a links to Rfam database...	0.41	0.19	0.89	16	46953	3	0	2	1	70
ASE_00229	RNaseP_bact_a links to Rfam database...	0.28	0.08	1.00	7	42479	0	0	0	0	80
ASE_00231	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	47895	0	0	0	0	96
ASE_00232	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	38503	0	0	0	0	84
ASE_00234	RNaseP_bact_a links to Rfam database...	0.38	0.18	0.82	23	75438	6	0	5	1	106
ASE_00238	RNaseP_bact_a links to Rfam database...	0.18	0.04	0.71	5	64254	2	0	2	0	109
ASE_00241	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	43956	0	0	0	0	87
ASE_00242	RNaseP_bact_a links to Rfam database...	0.44	0.21	0.96	23	61051	1	0	1	0	89
ASE_00248	RNaseP_bact_a links to Rfam database...	0.72	0.55	0.94	63	62414	5	0	4	1	51
ASE_00254	RNaseP_bact_a links to Rfam database...	0.54	0.30	0.96	25	36830	1	0	1	0	57
ASE_00255	RNaseP_bact_a links to Rfam database...	0.67	0.55	0.84	71	74606	16	1	13	2	59
ASE_00257	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	51040	0	0	0	0	97
ASE_00263	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	70500	0	0	0	0	120
ASE_00267	RNaseP_bact_a links to Rfam database...	0.46	0.22	1.00	19	45131	1	0	0	1	69
ASE_00270	RNaseP_bact_a links to Rfam database...	0.30	0.10	0.87	13	72375	2	0	2	0	115
ASE_00274	RNaseP_bact_a links to Rfam database...	0.18	0.04	0.80	4	55606	1	0	1	0	99
ASE_00277	RNaseP_bact_a links to Rfam database...	0.27	0.10	0.75	9	48193	3	0	3	0	82
ASE_00279	RNaseP_bact_a links to Rfam database...	0.24	0.06	1.00	6	53295	0	0	0	0	95
ASE_00280	RNaseP_bact_a links to Rfam database...	0.40	0.20	0.80	20	51978	5	0	5	0	78
ASE_00281	RNaseP_bact_a links to Rfam database...	0.24	0.06	1.00	5	44546	1	0	0	1	83
ASE_00282	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	77815	0	0	0	0	127
ASE_00283	RNaseP_bact_a links to Rfam database...	0.18	0.05	0.71	5	61769	3	0	2	1	102
ASE_00284	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	58311	0	0	0	0	108
ASE_00285	RNaseP_bact_a links to Rfam database...	0.50	0.27	0.94	33	68971	3	0	2	1	89
ASE_00286	RNaseP_bact_a links to Rfam database...	0.19	0.04	0.80	4	46660	1	0	1	0	88
ASE_00287	RNaseP_bact_a links to Rfam database...	0.18	0.04	0.80	4	54941	1	0	1	0	99
ASE_00292	RNaseP_bact_a links to Rfam database...	0.53	0.32	0.88	44	81760	7	1	5	1	94
ASE_00294	RNaseP_bact_a links to Rfam database...	0.47	0.22	0.97	38	114442	1	1	0	0	133
ASE_00296	RNaseP_bact_a links to Rfam database...	0.42	0.20	0.88	29	91773	5	1	3	1	116
ASE_00297	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	52975	0	0	0	0	98
ASE_00298	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	67528	0	0	0	0	113
ASE_00305	RNaseP_bact_b links to Rfam database...	0.75	0.58	0.98	49	54565	2	0	1	1	36
ASE_00318	RNaseP_bact_b links to Rfam database...	0.55	0.32	0.95	38	80160	4	0	2	2	80
ASE_00321	RNaseP_bact_b links to Rfam database...	0.71	0.51	0.98	45	54569	4	0	1	3	43
ASE_00328	RNaseP_bact_b links to Rfam database...	0.73	0.55	0.97	62	72707	8	0	2	6	50
ASE_00332	RNaseP_bact_a links to Rfam database...	0.49	0.25	0.95	35	81773	3	0	2	1	103
ASE_00335	RNaseP_bact_b links to Rfam database...	0.65	0.46	0.93	53	75409	9	0	4	5	63
ASE_00340	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46056	3	0	0	3	85
ASE_00342	RNaseP_bact_a links to Rfam database...	0.45	0.21	0.96	24	62456	1	1	0	0	91
ASE_00353	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	57970	0	0	0	0	107
ASE_00361	RNaseP_bact_a links to Rfam database...	0.18	0.03	1.00	4	75462	0	0	0	0	123
ASE_00362	RNaseP_bact_a links to Rfam database...	0.23	0.05	1.00	5	48200	1	0	0	1	86
ASE_00363	RNaseP_bact_a links to Rfam database...	0.33	0.12	0.92	11	51348	2	0	1	1	83
ASE_00364	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	54285	0	0	0	0	105
ASE_00366	RNaseP_bact_a links to Rfam database...	0.23	0.08	0.67	8	58641	4	0	4	0	90
ASE_00367	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	43071	0	0	0	0	86
ASE_00369	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	55945	0	0	0	0	107
ASE_00370	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	41905	0	0	0	0	84
ASE_00372	RNaseP_bact_a links to Rfam database...	0.18	0.04	0.80	4	51998	1	0	1	0	96
ASE_00374	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	44850	0	0	0	0	88
ASE_00376	RNaseP_bact_a links to Rfam database...	0.16	0.04	0.67	4	56947	2	0	2	0	101
ASE_00377	RNaseP_bact_a links to Rfam database...	0.24	0.07	0.80	8	57620	3	0	2	1	99
ASE_00379	RNaseP_bact_a links to Rfam database...	0.24	0.06	1.00	5	46051	0	0	0	0	84
ASE_00382	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	41905	0	0	0	0	84
ASE_00383	RNaseP_bact_a links to Rfam database...	0.19	0.04	1.00	4	54611	0	0	0	0	101
ASE_00384	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	48516	0	0	0	0	92
ASE_00386	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	50403	0	0	0	0	96
ASE_00387	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	55945	0	0	0	0	104
ASE_00388	RNaseP_bact_a links to Rfam database...	0.44	0.20	0.95	18	45734	2	0	1	1	71
ASE_00390	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	42195	0	0	0	0	85
ASE_00393	RNaseP_bact_a links to Rfam database...	0.39	0.16	0.94	15	47879	1	0	1	0	78
ASE_00394	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46971	0	0	0	0	93
ASE_00395	RNaseP_bact_a links to Rfam database...	0.24	0.06	1.00	5	41611	1	0	0	1	79
ASE_00396	RNaseP_bact_a links to Rfam database...	0.36	0.14	0.92	12	41603	1	0	1	0	71
ASE_00397	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	54615	0	0	0	0	105
ASE_00398	RNaseP_bact_a links to Rfam database...	0.43	0.18	1.00	19	55926	1	0	0	1	85
ASE_00400	RNaseP_bact_a links to Rfam database...	0.54	0.31	0.94	33	57935	2	0	2	0	73
ASE_00401	RNaseP_bact_a links to Rfam database...	0.15	0.03	0.67	4	77022	2	0	2	0	122
ASE_00402	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	42486	0	0	0	0	85
ASE_00403	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	55945	0	0	0	0	107
ASE_00404	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	43071	0	0	0	0	85
ASE_00406	RNaseP_bact_a links to Rfam database...	0.44	0.23	0.85	22	48802	7	0	4	3	72
ASE_00411	RNaseP_bact_a links to Rfam database...	0.41	0.22	0.74	20	49428	8	0	7	1	69
ASE_00412	RNaseP_bact_a links to Rfam database...	0.19	0.08	0.47	8	58294	10	0	9	1	97
ASE_00413	RNaseP_bact_a links to Rfam database...	0.33	0.12	0.91	10	44540	1	0	1	0	71
ASE_00415	RNaseP_bact_a links to Rfam database...	0.16	0.04	0.67	4	54940	2	0	2	0	99
ASE_00416	RNaseP_bact_a links to Rfam database...	0.40	0.18	0.88	23	77395	6	1	2	3	104
ASE_00419	RNaseP_bact_a links to Rfam database...	0.39	0.16	1.00	16	54930	1	0	0	1	87
ASE_00422	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46971	0	0	0	0	94
ASE_00423	RNaseP_bact_a links to Rfam database...	0.57	0.37	0.89	40	56908	6	1	4	1	69
ASE_00427	RNaseP_nuc links to Rfam database...	0.31	0.15	0.64	7	40744	4	0	4	0	39
ASE_00428	RNaseP_bact_a links to Rfam database...	0.43	0.19	0.96	24	76611	2	1	0	1	101
ASE_00430	RNaseP_bact_a links to Rfam database...	0.49	0.24	1.00	23	46948	0	0	0	0	74
ASE_00437	RNaseP_bact_a links to Rfam database...	0.22	0.10	0.52	13	79376	12	1	11	0	122
ASE_00441	RNaseP_bact_a links to Rfam database...	0.41	0.17	1.00	19	64242	0	0	0	0	93
ASE_00448	RNaseP_bact_a links to Rfam database...	0.55	0.33	0.93	37	64221	8	1	2	5	75
ASE_00451	RNaseP_bact_a links to Rfam database...	0.47	0.24	0.91	30	70843	3	1	2	0	95
RFA_00599	Telomerase-vert links to Rfam database...	0.00	0.00	0.00	0	101475	0	0	0	0	111
RFA_00601	Telomerase-vert links to Rfam database...	0.00	0.00	0.00	0	99235	0	0	0	0	114
RFA_00602	Telomerase-vert links to Rfam database...	0.00	0.00	0.00	0	101475	0	0	0	0	116
SRP_00006	Metazoa_SRP links to Rfam database...	0.68	0.48	0.98	48	45704	6	0	1	5	53
SRP_00011	Plant_SRP links to Rfam database...	0.57	0.33	1.00	34	46326	1	0	0	1	70
SRP_00015	Plant_SRP links to Rfam database...	0.65	0.46	0.90	46	46309	7	0	5	2	53
SRP_00024	Bacteria_large_SRP links to Rfam database...	0.22	0.06	0.83	5	37669	1	0	1	0	82
SRP_00026	Bacteria_large_SRP links to Rfam database...	0.24	0.06	1.00	5	36851	0	0	0	0	83
SRP_00027	Bacteria_large_SRP links to Rfam database...	0.24	0.06	1.00	5	37123	0	0	0	0	82
SRP_00030	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	36856	0	0	0	0	88
SRP_00031	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	36315	0	0	0	0	89
SRP_00037	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	36585	0	0	0	0	87
SRP_00050	Metazoa_SRP links to Rfam database...	0.60	0.44	0.81	44	44796	12	0	10	2	55
SRP_00066	Metazoa_SRP links to Rfam database...	0.60	0.40	0.89	40	45406	8	0	5	3	60
SRP_00086	Metazoa_SRP links to Rfam database...	0.65	0.47	0.89	47	44200	7	0	6	1	53
SRP_00088	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	34191	0	0	0	0	89
SRP_00089	Bacteria_large_SRP links to Rfam database...	0.24	0.06	1.00	5	35773	0	0	0	0	85
SRP_00090	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	35511	0	0	0	0	90
SRP_00102	Metazoa_SRP links to Rfam database...	0.62	0.46	0.84	46	44496	12	1	8	3	55
SRP_00103	Metazoa_SRP links to Rfam database...	0.64	0.44	0.92	45	45402	7	0	4	3	57
SRP_00152	Plant_SRP links to Rfam database...	0.58	0.39	0.87	40	45707	6	0	6	0	63
SRP_00171	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	45435	16	2	14	0	88
SRP_00173	Bacteria_large_SRP links to Rfam database...	0.24	0.06	1.00	5	38221	0	0	0	0	85
SRP_00174	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	38781	0	0	0	0	86
SRP_00178	Plant_SRP links to Rfam database...	0.53	0.28	1.00	29	45724	2	0	0	2	73
SRP_00179	Plant_SRP links to Rfam database...	0.70	0.50	0.96	53	46001	5	0	2	3	52
SRP_00181	Plant_SRP links to Rfam database...	0.56	0.31	1.00	32	46024	2	0	0	2	70
SRP_00182	Plant_SRP links to Rfam database...	0.43	0.22	0.85	22	46030	4	0	4	0	79
SRP_00184	Plant_SRP links to Rfam database...	0.35	0.16	0.76	16	46035	8	0	5	3	84
SRP_00188	Plant_SRP links to Rfam database...	0.24	0.11	0.53	9	31108	8	1	7	0	70
SRP_00228	Metazoa_SRP links to Rfam database...	0.77	0.61	0.98	58	45392	3	0	1	2	37
SRP_00234	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	36315	0	0	0	0	86
SRP_00308	Bacteria_large_SRP links to Rfam database...	0.30	0.10	0.90	9	36305	1	0	1	0	79
SRP_00317	Metazoa_SRP links to Rfam database...	0.58	0.38	0.88	37	45108	6	0	5	1	61
SRP_00335	Bacteria_large_SRP links to Rfam database...	0.28	0.08	1.00	3	35242	0	0	0	0	36
SRP_00337	Bacteria_large_SRP links to Rfam database...	0.23	0.05	1.00	5	35506	0	0	0	0	86
SRP_00347	Metazoa_SRP links to Rfam database...	0.71	0.53	0.96	51	46612	3	0	2	1	45
SRP_00368	Metazoa_SRP links to Rfam database...	0.55	0.39	0.78	38	43907	14	0	11	3	60
TMR_00017	tmRNA links to Rfam database...	0.51	0.35	0.75	36	67113	12	1	11	0	66
TMR_00018	tmRNA links to Rfam database...	0.48	0.34	0.69	31	64575	14	3	11	0	61
TMR_00038	tmRNA links to Rfam database...	0.33	0.11	1.00	12	71241	0	0	0	0	98
TMR_00042	tmRNA links to Rfam database...	0.55	0.35	0.87	34	62796	6	1	4	1	64
TMR_00046	tmRNA links to Rfam database...	0.59	0.35	1.00	34	62801	0	0	0	0	62
TMR_00048	tmRNA links to Rfam database...	0.43	0.26	0.71	25	64945	13	1	9	3	70
TMR_00080	tmRNA links to Rfam database...	0.27	0.17	0.44	16	70464	20	7	13	0	80
TMR_00082	tmRNA links to Rfam database...	0.48	0.31	0.75	30	67856	11	5	5	1	66
TMR_00123	tmRNA links to Rfam database...	0.36	0.13	1.00	13	66417	0	0	0	0	88
TMR_00137	tmRNA links to Rfam database...	0.44	0.19	1.00	17	61058	0	0	0	0	72
TMR_00142	tmRNA links to Rfam database...	0.41	0.20	0.87	20	70853	3	0	3	0	82
TMR_00207	tmRNA links to Rfam database...	0.41	0.25	0.67	26	72351	13	2	11	0	77
TMR_00257	tmRNA links to Rfam database...	0.56	0.35	0.92	34	67124	4	2	1	1	64
TMR_00271	tmRNA links to Rfam database...	0.37	0.21	0.66	19	64232	14	4	6	4	72
TMR_00332	tmRNA links to Rfam database...	0.55	0.33	0.92	33	67125	3	2	1	0	66
TMR_00366	tmRNA links to Rfam database...	0.46	0.22	0.96	22	67873	1	0	1	0	78
TMR_00378	tmRNA links to Rfam database...	0.47	0.23	0.96	22	67873	1	0	1	0	75
TMR_00399	tmRNA links to Rfam database...	0.39	0.26	0.59	24	64939	17	5	12	0	70
TMR_00404	tmRNA links to Rfam database...	0.63	0.41	0.95	38	67488	2	1	1	0	54
TMR_00427	tmRNA links to Rfam database...	0.23	0.05	1.00	5	67523	0	0	0	0	92
TMR_00443	tmRNA links to Rfam database...	0.64	0.50	0.81	52	67097	12	1	11	0	52
TMR_00451	tmRNA links to Rfam database...	0.52	0.31	0.85	28	63513	5	0	5	0	61
TMR_00458	tmRNA links to Rfam database...	0.59	0.38	0.92	35	63508	3	2	1	0	58
TMR_00469	tmRNA links to Rfam database...	0.41	0.17	1.00	17	64603	0	0	0	0	83
TMR_00472	tmRNA links to Rfam database...	0.49	0.24	1.00	23	64597	0	0	0	0	74
TMR_00519	tmRNA links to Rfam database...	0.47	0.23	0.96	22	63167	1	1	0	0	73
TMR_00520	tmRNA links to Rfam database...	0.48	0.23	1.00	23	63167	0	0	0	0	76
TMR_00522	tmRNA links to Rfam database...	0.27	0.07	1.00	7	63183	0	0	0	0	90
TMR_00528	tmRNA links to Rfam database...	0.27	0.07	1.00	7	63183	0	0	0	0	90
TMR_00540	tmRNA links to Rfam database...	0.61	0.40	0.91	42	73490	4	1	3	0	62
TMR_00568	tmRNA links to Rfam database...	0.58	0.42	0.79	42	60673	13	1	10	2	57
TMR_00571	tmRNA links to Rfam database...	0.63	0.46	0.85	46	60672	11	1	7	3	53
TMR_00580	tmRNA links to Rfam database...	0.58	0.42	0.81	42	60674	13	1	9	3	58
TMR_00584	tmRNA links to Rfam database...	0.65	0.46	0.92	45	61026	6	0	4	2	52
TMR_00586	tmRNA links to Rfam database...	0.53	0.39	0.72	38	61022	17	4	11	2	59
TMR_00616	tmRNA links to Rfam database...	0.41	0.17	1.00	17	67144	0	0	0	0	82
TMR_00699	tmRNA links to Rfam database...	0.42	0.25	0.74	25	67127	9	3	6	0	77
TMR_00702	tmRNA links to Rfam database...	0.38	0.20	0.71	20	67133	9	2	6	1	80
TMR_00703	tmRNA links to Rfam database...	0.37	0.25	0.54	25	67482	21	3	18	0	74

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Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.

Table of contents:

Overview

Performance plots

Performance of CentroidHomfold‑LAST - scored higher in this pairwise comparison

1. Total counts & total scores for CentroidHomfold‑LAST

2. Individual counts for CentroidHomfold‑LAST [ download as .csv ]

Performance of Carnac(20) - scored lower in this pairwise comparison

1. Total counts & total scores for Carnac(20)

2. Individual counts for Carnac(20) [ download as .csv ]