CompaRNA - on-line benchmarks of RNA structure prediction methods

Laboratory of Structural Bioinformatics @ Adam Mickiewicz University in Poznan

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Overview

Metric	McQFold		RSpredict(20)
MCC	0.442	>	0.052
Average MCC ± 95% Confidence Intervals	0.441 ± 0.020	>	0.047 ± 0.012
Sensitivity	0.424	>	0.041
Positive Predictive Value	0.464	>	0.069
Total TP	10647	>	1036
Total TN	14151247	<	14159081
Total FP	13186	<	14577
Total FP CONTRA	1479	<	1944
Total FP INCONS	10820	<	12132
Total FP COMP	887	>	501
Total FN	14479	<	24090
P-value	3.56938820447e-08

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Performance plots

Comparison of performance of McQFold and RSpredict(20). Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data (individual counts for McQFold and RSpredict(20)).
Average Matthews Correlation Coefficients (MCC) with 95% confidence intervals (CIs) were plotted for different RNA families, for which at least 3 members were present in the benchmarking dataset. 'n' denotes the number of MCCs used to calculate the average and CI. See tables below for raw data (individual counts for McQFold and RSpredict(20)).
Comparison of average Matthews Correlation Coefficients (MCCs) for McQFold and RSpredict(20). The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data (individual counts for McQFold and RSpredict(20)).

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Performance of McQFold - scored higher in this pairwise comparison

1. Total counts & total scores for McQFold

Total Base Pair Counts
Total TP	10647
Total TN	14151247
Total FP	13186
Total FP CONTRA	1479
Total FP INCONS	10820
Total FP COMP	887
Total FN	14479

Total Scores
MCC	0.442
Average MCC ± 95% Confidence Intervals	0.441 ± 0.020
Sensitivity	0.424
Positive Predictive Value	0.464
Nr of predictions	245

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2. Individual counts for McQFold [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00004	RNaseP_bact_a links to Rfam database...	0.50	0.48	0.52	47	47805	48	9	34	5	50
ASE_00005	RNaseP_bact_a links to Rfam database...	0.52	0.46	0.59	54	57878	40	0	38	2	63
ASE_00006	RNaseP_bact_a links to Rfam database...	0.35	0.34	0.36	32	47498	60	6	50	4	61
ASE_00007	RNaseP_bact_a links to Rfam database...	0.42	0.39	0.46	43	59591	55	2	49	4	67
ASE_00012	RNaseP_bact_a links to Rfam database...	0.42	0.39	0.46	48	73816	61	3	53	5	75
ASE_00018	RNaseP_bact_a links to Rfam database...	0.54	0.51	0.57	68	80482	52	2	49	1	66
ASE_00020	RNaseP_bact_a links to Rfam database...	0.47	0.47	0.48	59	73797	64	9	55	0	67
ASE_00021	RNaseP_bact_a links to Rfam database...	0.60	0.54	0.67	86	104068	47	2	40	5	74
ASE_00022	RNaseP_bact_b links to Rfam database...	0.60	0.56	0.65	70	82920	45	5	33	7	54
ASE_00028	RNaseP_bact_b links to Rfam database...	0.56	0.54	0.59	68	84550	50	11	37	2	58
ASE_00035	RNaseP_bact_a links to Rfam database...	0.29	0.27	0.32	32	70401	71	9	58	4	86
ASE_00037	RNaseP_bact_a links to Rfam database...	0.42	0.38	0.46	42	59248	50	5	45	0	68
ASE_00038	RNaseP_bact_a links to Rfam database...	0.41	0.39	0.43	39	53538	53	3	48	2	62
ASE_00040	RNaseP_bact_a links to Rfam database...	0.27	0.26	0.29	34	78886	88	9	74	5	99
ASE_00041	RNaseP_bact_a links to Rfam database...	0.46	0.43	0.51	46	57539	48	6	39	3	62
ASE_00042	RNaseP_bact_a links to Rfam database...	0.56	0.53	0.60	77	89972	53	4	47	2	68
ASE_00044	RNaseP_bact_a links to Rfam database...	0.78	0.76	0.80	80	54515	25	4	16	5	25
ASE_00045	RNaseP_bact_b links to Rfam database...	0.30	0.29	0.31	23	47203	59	7	45	7	57
ASE_00064	RNaseP_bact_a links to Rfam database...	0.50	0.49	0.51	44	45364	46	5	38	3	45
ASE_00068	RNaseP_bact_a links to Rfam database...	0.70	0.60	0.82	51	37613	16	2	9	5	34
ASE_00074	RNaseP_bact_a links to Rfam database...	0.42	0.40	0.44	48	67786	62	3	59	0	71
ASE_00075	RNaseP_bact_a links to Rfam database...	0.51	0.46	0.57	74	108681	62	4	52	6	88
ASE_00077	RNaseP_bact_a links to Rfam database...	0.42	0.40	0.45	34	45075	47	5	36	6	52
ASE_00078	RNaseP_bact_a links to Rfam database...	0.55	0.52	0.58	43	42997	38	2	29	7	40
ASE_00080	RNaseP_bact_a links to Rfam database...	0.32	0.30	0.35	37	71524	71	6	64	1	86
ASE_00081	RNaseP_bact_a links to Rfam database...	0.31	0.29	0.34	28	49688	56	5	49	2	69
ASE_00082	RNaseP_bact_a links to Rfam database...	0.38	0.36	0.40	42	70396	73	2	60	11	74
ASE_00083	RNaseP_bact_a links to Rfam database...	0.25	0.25	0.26	27	62379	75	6	69	0	83
ASE_00084	RNaseP_bact_a links to Rfam database...	0.60	0.57	0.64	56	53540	36	2	30	4	43
ASE_00087	RNaseP_bact_a links to Rfam database...	0.49	0.42	0.57	61	88303	52	2	44	6	83
ASE_00090	RNaseP_bact_a links to Rfam database...	0.52	0.52	0.52	53	55510	52	6	42	4	48
ASE_00092	RNaseP_bact_a links to Rfam database...	0.46	0.44	0.49	50	63444	55	6	46	3	63
ASE_00099	RNaseP_bact_a links to Rfam database...	0.58	0.56	0.61	67	64510	44	4	39	1	53
ASE_00104	RNaseP_bact_a links to Rfam database...	0.53	0.52	0.55	62	64148	52	8	43	1	57
ASE_00105	RNaseP_bact_a links to Rfam database...	0.35	0.32	0.38	36	64165	64	2	58	4	75
ASE_00107	RNaseP_bact_a links to Rfam database...	0.56	0.53	0.59	67	73039	48	1	46	1	60
ASE_00114	RNaseP_bact_b links to Rfam database...	0.26	0.26	0.27	20	45376	63	10	45	8	57
ASE_00115	RNaseP_bact_a links to Rfam database...	0.61	0.57	0.64	58	54525	40	4	28	8	43
ASE_00118	RNaseP_bact_a links to Rfam database...	0.39	0.37	0.40	38	60632	60	3	53	4	64
ASE_00119	RNaseP_bact_a links to Rfam database...	0.83	0.81	0.86	87	62734	14	2	12	0	21
ASE_00123	RNaseP_bact_a links to Rfam database...	0.43	0.40	0.47	34	38430	45	0	39	6	51
ASE_00125	RNaseP_bact_a links to Rfam database...	0.43	0.38	0.49	33	39272	38	2	33	3	55
ASE_00126	RNaseP_bact_a links to Rfam database...	0.54	0.51	0.57	42	40396	33	3	29	1	40
ASE_00128	RNaseP_bact_a links to Rfam database...	0.43	0.39	0.48	39	53219	47	3	40	4	61
ASE_00129	RNaseP_bact_a links to Rfam database...	0.61	0.59	0.62	66	62729	42	3	37	2	45
ASE_00131	RNaseP_bact_a links to Rfam database...	0.37	0.33	0.42	28	39274	43	3	35	5	57
ASE_00134	RNaseP_bact_a links to Rfam database...	0.33	0.32	0.35	30	50317	57	7	49	1	65
ASE_00135	RNaseP_bact_a links to Rfam database...	0.30	0.28	0.31	31	63090	74	3	66	5	78
ASE_00136	RNaseP_bact_a links to Rfam database...	0.67	0.64	0.71	59	48122	32	1	23	8	33
ASE_00137	RNaseP_bact_a links to Rfam database...	0.53	0.52	0.55	51	48423	45	5	37	3	47
ASE_00138	RNaseP_bact_a links to Rfam database...	0.56	0.51	0.63	41	40405	25	4	20	1	40
ASE_00140	RNaseP_bact_a links to Rfam database...	0.53	0.49	0.57	61	70769	47	7	39	1	64
ASE_00142	RNaseP_bact_a links to Rfam database...	0.59	0.57	0.61	69	67048	47	5	39	3	53
ASE_00146	RNaseP_bact_a links to Rfam database...	0.53	0.49	0.58	61	70770	48	1	44	3	63
ASE_00153	RNaseP_nuc links to Rfam database...	0.51	0.53	0.49	39	57550	72	9	32	31	34
ASE_00161	RNaseP_bact_b links to Rfam database...	0.29	0.29	0.29	25	53543	63	8	52	3	62
ASE_00163	RNaseP_bact_a links to Rfam database...	0.41	0.40	0.42	37	53213	57	4	47	6	56
ASE_00165	RNaseP_bact_a links to Rfam database...	0.40	0.39	0.42	39	52882	56	6	48	2	62
ASE_00170	RNaseP_bact_a links to Rfam database...	0.72	0.69	0.74	64	48742	24	2	20	2	29
ASE_00171	RNaseP_bact_a links to Rfam database...	0.52	0.50	0.55	47	48431	38	3	35	0	47
ASE_00172	RNaseP_bact_a links to Rfam database...	0.50	0.47	0.54	50	58903	50	5	38	7	56
ASE_00174	RNaseP_bact_a links to Rfam database...	0.44	0.41	0.46	45	60978	53	5	47	1	64
ASE_00175	RNaseP_bact_a links to Rfam database...	0.22	0.21	0.23	23	59931	80	5	72	3	84
ASE_00179	RNaseP_bact_a links to Rfam database...	0.54	0.52	0.56	44	44174	36	8	27	1	40
ASE_00180	RNaseP_bact_a links to Rfam database...	0.42	0.41	0.42	41	51263	60	4	52	4	59
ASE_00181	RNaseP_bact_a links to Rfam database...	0.53	0.54	0.53	57	57522	51	4	47	0	49
ASE_00182	RNaseP_bact_a links to Rfam database...	0.45	0.40	0.50	55	84145	57	2	53	2	81
ASE_00183	RNaseP_bact_a links to Rfam database...	0.67	0.63	0.71	71	61325	36	0	29	7	42
ASE_00184	RNaseP_bact_a links to Rfam database...	0.52	0.51	0.54	52	54519	46	8	36	2	50
ASE_00185	RNaseP_bact_a links to Rfam database...	0.29	0.28	0.31	36	73419	81	14	67	0	92
ASE_00186	RNaseP_bact_a links to Rfam database...	0.55	0.51	0.59	67	78889	56	3	44	9	65
ASE_00190	RNaseP_bact_b links to Rfam database...	0.55	0.52	0.57	47	45369	40	2	33	5	43
ASE_00197	RNaseP_bact_a links to Rfam database...	0.42	0.39	0.45	56	89129	76	1	67	8	89
ASE_00198	RNaseP_bact_a links to Rfam database...	0.50	0.46	0.55	47	52564	44	2	37	5	55
ASE_00203	RNaseP_bact_a links to Rfam database...	0.54	0.55	0.53	53	46565	51	4	43	4	43
ASE_00212	RNaseP_bact_a links to Rfam database...	0.43	0.40	0.46	59	93832	80	3	67	10	89
ASE_00214	RNaseP_bact_a links to Rfam database...	0.66	0.63	0.70	65	56187	35	2	26	7	38
ASE_00215	RNaseP_bact_a links to Rfam database...	0.30	0.28	0.32	28	48429	60	7	52	1	71
ASE_00216	RNaseP_bact_a links to Rfam database...	0.65	0.62	0.67	51	39264	26	7	18	1	31
ASE_00217	RNaseP_bact_a links to Rfam database...	0.21	0.19	0.25	17	40401	54	6	46	2	73
ASE_00221	RNaseP_bact_a links to Rfam database...	0.32	0.29	0.35	34	64522	65	3	61	1	83
ASE_00228	RNaseP_bact_a links to Rfam database...	0.38	0.37	0.40	32	46890	50	11	38	1	54
ASE_00229	RNaseP_bact_a links to Rfam database...	0.52	0.53	0.52	46	42398	44	6	36	2	41
ASE_00231	RNaseP_bact_a links to Rfam database...	0.63	0.60	0.67	58	47808	33	4	25	4	38
ASE_00232	RNaseP_bact_a links to Rfam database...	0.70	0.70	0.69	59	38418	29	8	18	3	25
ASE_00234	RNaseP_bact_a links to Rfam database...	0.31	0.28	0.34	36	75360	71	9	61	1	93
ASE_00238	RNaseP_bact_a links to Rfam database...	0.47	0.44	0.51	50	64163	50	2	46	2	64
ASE_00241	RNaseP_bact_a links to Rfam database...	0.20	0.18	0.23	16	43886	55	3	51	1	71
ASE_00242	RNaseP_bact_a links to Rfam database...	0.63	0.59	0.67	66	60976	34	3	30	1	46
ASE_00248	RNaseP_bact_a links to Rfam database...	0.19	0.18	0.20	20	62382	81	6	73	2	94
ASE_00254	RNaseP_bact_a links to Rfam database...	0.38	0.37	0.40	30	36781	48	3	42	3	52
ASE_00255	RNaseP_bact_a links to Rfam database...	0.55	0.53	0.58	69	74572	54	4	46	4	61
ASE_00257	RNaseP_bact_a links to Rfam database...	0.50	0.48	0.53	47	50951	49	3	39	7	50
ASE_00263	RNaseP_bact_a links to Rfam database...	0.62	0.59	0.65	71	70390	40	4	35	1	49
ASE_00267	RNaseP_bact_a links to Rfam database...	0.21	0.19	0.23	17	45075	63	8	50	5	71
ASE_00270	RNaseP_bact_a links to Rfam database...	0.45	0.42	0.49	54	72279	57	5	52	0	74
ASE_00274	RNaseP_bact_a links to Rfam database...	0.49	0.44	0.55	45	55529	38	5	32	1	58
ASE_00277	RNaseP_bact_a links to Rfam database...	0.39	0.37	0.40	34	48121	50	17	33	0	57
ASE_00279	RNaseP_bact_a links to Rfam database...	0.16	0.15	0.17	15	53215	73	2	69	2	86
ASE_00280	RNaseP_bact_a links to Rfam database...	0.40	0.40	0.41	39	51908	60	9	47	4	59
ASE_00281	RNaseP_bact_a links to Rfam database...	0.74	0.66	0.84	58	44482	17	0	11	6	30
ASE_00282	RNaseP_bact_a links to Rfam database...	0.55	0.50	0.60	64	77708	50	7	36	7	63
ASE_00283	RNaseP_bact_a links to Rfam database...	0.54	0.52	0.55	56	61675	47	3	42	2	51
ASE_00284	RNaseP_bact_a links to Rfam database...	0.21	0.20	0.22	22	58211	82	8	70	4	86
ASE_00285	RNaseP_bact_a links to Rfam database...	0.54	0.52	0.57	63	68895	53	2	46	5	59
ASE_00286	RNaseP_bact_a links to Rfam database...	0.38	0.35	0.42	32	46589	45	4	40	1	60
ASE_00287	RNaseP_bact_a links to Rfam database...	0.28	0.27	0.30	28	54852	67	9	57	1	75
ASE_00292	RNaseP_bact_a links to Rfam database...	0.42	0.38	0.48	52	81701	58	3	54	1	86
ASE_00294	RNaseP_bact_a links to Rfam database...	0.43	0.41	0.45	70	114326	87	5	80	2	101
ASE_00296	RNaseP_bact_a links to Rfam database...	0.15	0.14	0.17	21	91680	105	6	99	0	124
ASE_00297	RNaseP_bact_a links to Rfam database...	0.34	0.33	0.36	32	52887	59	8	48	3	66
ASE_00298	RNaseP_bact_a links to Rfam database...	0.21	0.21	0.22	24	67418	87	14	72	1	89
ASE_00305	RNaseP_bact_b links to Rfam database...	0.64	0.67	0.62	57	54523	44	7	28	9	28
ASE_00318	RNaseP_bact_b links to Rfam database...	0.64	0.62	0.66	73	80090	41	10	27	4	45
ASE_00321	RNaseP_bact_b links to Rfam database...	0.73	0.73	0.74	64	54528	29	3	20	6	24
ASE_00328	RNaseP_bact_b links to Rfam database...	0.61	0.60	0.63	67	72665	47	2	37	8	45
ASE_00332	RNaseP_bact_a links to Rfam database...	0.41	0.40	0.43	55	81683	75	3	69	3	83
ASE_00335	RNaseP_bact_b links to Rfam database...	0.62	0.58	0.68	67	75367	37	5	27	5	49
ASE_00340	RNaseP_bact_a links to Rfam database...	0.34	0.35	0.33	30	45965	64	10	51	3	55
ASE_00342	RNaseP_bact_a links to Rfam database...	0.68	0.63	0.73	73	62381	29	2	25	2	42
ASE_00353	RNaseP_bact_a links to Rfam database...	0.61	0.60	0.62	64	57867	40	2	37	1	43
ASE_00361	RNaseP_bact_a links to Rfam database...	0.43	0.40	0.47	51	75358	59	8	49	2	76
ASE_00362	RNaseP_bact_a links to Rfam database...	0.53	0.53	0.53	48	48114	45	4	39	2	43
ASE_00363	RNaseP_bact_a links to Rfam database...	0.49	0.48	0.51	45	51272	50	5	38	7	49
ASE_00364	RNaseP_bact_a links to Rfam database...	0.55	0.51	0.59	54	54193	39	3	35	1	51
ASE_00366	RNaseP_bact_a links to Rfam database...	0.40	0.40	0.40	39	58555	60	10	49	1	59
ASE_00367	RNaseP_bact_a links to Rfam database...	0.44	0.43	0.45	37	42988	54	2	44	8	49
ASE_00369	RNaseP_bact_a links to Rfam database...	0.57	0.55	0.60	59	55846	42	6	34	2	48
ASE_00370	RNaseP_bact_a links to Rfam database...	0.43	0.40	0.47	34	41832	40	6	33	1	50
ASE_00372	RNaseP_bact_a links to Rfam database...	0.56	0.55	0.58	55	51908	43	7	33	3	45
ASE_00374	RNaseP_bact_a links to Rfam database...	0.56	0.56	0.56	49	44762	39	6	33	0	39
ASE_00376	RNaseP_bact_a links to Rfam database...	0.55	0.51	0.60	54	56863	37	4	32	1	51
ASE_00377	RNaseP_bact_a links to Rfam database...	0.76	0.71	0.81	76	57536	23	2	16	5	31
ASE_00379	RNaseP_bact_a links to Rfam database...	0.46	0.44	0.49	39	45976	42	7	34	1	50
ASE_00382	RNaseP_bact_a links to Rfam database...	0.73	0.68	0.78	57	41832	18	5	11	2	27
ASE_00383	RNaseP_bact_a links to Rfam database...	0.39	0.36	0.43	38	54526	51	3	48	0	67
ASE_00384	RNaseP_bact_a links to Rfam database...	0.32	0.30	0.35	28	48435	62	3	50	9	64
ASE_00386	RNaseP_bact_a links to Rfam database...	0.58	0.56	0.60	54	50313	38	7	29	2	42
ASE_00387	RNaseP_bact_a links to Rfam database...	0.49	0.48	0.50	50	55845	53	5	45	3	54
ASE_00388	RNaseP_bact_a links to Rfam database...	0.51	0.49	0.54	44	45671	48	1	37	10	45
ASE_00390	RNaseP_bact_a links to Rfam database...	0.53	0.51	0.55	43	42117	46	1	34	11	42
ASE_00393	RNaseP_bact_a links to Rfam database...	0.37	0.34	0.41	32	47816	53	2	45	6	61
ASE_00394	RNaseP_bact_a links to Rfam database...	0.57	0.55	0.59	51	46884	41	2	34	5	42
ASE_00395	RNaseP_bact_a links to Rfam database...	0.71	0.67	0.76	56	41542	28	1	17	10	28
ASE_00396	RNaseP_bact_a links to Rfam database...	0.47	0.46	0.48	38	41536	46	8	34	4	45
ASE_00397	RNaseP_bact_a links to Rfam database...	0.51	0.47	0.55	49	54526	41	4	36	1	56
ASE_00398	RNaseP_bact_a links to Rfam database...	0.39	0.38	0.40	39	55847	61	6	53	2	65
ASE_00400	RNaseP_bact_a links to Rfam database...	0.54	0.53	0.54	56	57867	48	7	40	1	50
ASE_00401	RNaseP_bact_a links to Rfam database...	0.54	0.52	0.56	65	76912	53	7	44	2	61
ASE_00402	RNaseP_bact_a links to Rfam database...	0.59	0.55	0.64	47	42412	29	7	20	2	38
ASE_00403	RNaseP_bact_a links to Rfam database...	0.24	0.22	0.27	24	55855	70	4	62	4	83
ASE_00404	RNaseP_bact_a links to Rfam database...	0.17	0.16	0.18	14	42992	70	4	61	5	71
ASE_00406	RNaseP_bact_a links to Rfam database...	0.56	0.54	0.57	51	48739	49	2	36	11	43
ASE_00411	RNaseP_bact_a links to Rfam database...	0.27	0.27	0.27	24	49367	65	7	57	1	65
ASE_00412	RNaseP_bact_a links to Rfam database...	0.26	0.25	0.27	26	58215	71	9	61	1	79
ASE_00413	RNaseP_bact_a links to Rfam database...	0.48	0.48	0.49	39	44471	45	1	40	4	42
ASE_00415	RNaseP_bact_a links to Rfam database...	0.62	0.59	0.65	61	54852	38	5	28	5	42
ASE_00416	RNaseP_bact_a links to Rfam database...	0.52	0.50	0.54	63	77304	57	5	49	3	64
ASE_00419	RNaseP_bact_a links to Rfam database...	0.75	0.71	0.78	73	54853	22	2	18	2	30
ASE_00422	RNaseP_bact_a links to Rfam database...	0.63	0.61	0.65	57	46883	38	3	28	7	37
ASE_00423	RNaseP_bact_a links to Rfam database...	0.36	0.35	0.38	38	56853	62	6	56	0	71
ASE_00427	RNaseP_nuc links to Rfam database...	0.11	0.13	0.09	6	40688	71	32	29	10	40
ASE_00428	RNaseP_bact_a links to Rfam database...	0.54	0.51	0.57	64	76523	52	6	43	3	61
ASE_00430	RNaseP_bact_a links to Rfam database...	0.64	0.62	0.67	60	46881	36	1	29	6	37
ASE_00437	RNaseP_bact_a links to Rfam database...	0.45	0.42	0.48	57	79283	62	1	60	1	78
ASE_00441	RNaseP_bact_a links to Rfam database...	0.73	0.65	0.81	73	64171	21	6	11	4	39
ASE_00448	RNaseP_bact_a links to Rfam database...	0.37	0.34	0.40	38	64167	62	5	51	6	74
ASE_00451	RNaseP_bact_a links to Rfam database...	0.37	0.35	0.40	44	70766	67	2	64	1	81
RFA_00599	Telomerase-vert links to Rfam database...	0.39	0.40	0.38	44	101359	92	13	59	20	67
RFA_00601	Telomerase-vert links to Rfam database...	0.09	0.10	0.08	11	99104	129	18	102	9	103
RFA_00602	Telomerase-vert links to Rfam database...	0.41	0.44	0.39	51	101343	91	19	62	10	65
SRP_00006	Metazoa_SRP links to Rfam database...	0.14	0.13	0.15	13	45669	73	3	68	2	88
SRP_00011	Plant_SRP links to Rfam database...	0.29	0.26	0.32	27	46276	57	2	55	0	77
SRP_00015	Plant_SRP links to Rfam database...	0.52	0.48	0.56	48	46274	39	0	38	1	51
SRP_00024	Bacteria_large_SRP links to Rfam database...	0.48	0.46	0.51	40	37596	40	2	37	1	47
SRP_00026	Bacteria_large_SRP links to Rfam database...	0.45	0.42	0.47	37	36778	46	2	39	5	51
SRP_00027	Bacteria_large_SRP links to Rfam database...	0.41	0.39	0.43	34	37048	46	7	39	0	53
SRP_00030	Bacteria_large_SRP links to Rfam database...	0.40	0.38	0.43	33	36780	44	6	37	1	55
SRP_00031	Bacteria_large_SRP links to Rfam database...	0.40	0.38	0.43	34	36236	45	2	43	0	55
SRP_00037	Bacteria_large_SRP links to Rfam database...	0.33	0.30	0.36	26	36513	46	4	42	0	61
SRP_00050	Metazoa_SRP links to Rfam database...	0.52	0.49	0.55	49	44761	40	4	36	0	50
SRP_00066	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	45360	91	8	83	0	100
SRP_00086	Metazoa_SRP links to Rfam database...	0.70	0.64	0.77	64	44170	21	1	18	2	36
SRP_00088	Bacteria_large_SRP links to Rfam database...	0.53	0.52	0.54	46	34106	39	4	35	0	43
SRP_00089	Bacteria_large_SRP links to Rfam database...	0.76	0.70	0.82	63	35701	14	1	13	0	27
SRP_00090	Bacteria_large_SRP links to Rfam database...	0.18	0.17	0.21	15	35439	58	7	50	1	75
SRP_00102	Metazoa_SRP links to Rfam database...	0.32	0.31	0.34	31	44460	60	6	54	0	70
SRP_00103	Metazoa_SRP links to Rfam database...	0.05	0.05	0.06	5	45362	84	7	77	0	97
SRP_00152	Plant_SRP links to Rfam database...	0.44	0.44	0.45	45	45654	54	11	43	0	58
SRP_00171	Metazoa_SRP links to Rfam database...	0.21	0.20	0.22	18	45368	65	8	57	0	70
SRP_00173	Bacteria_large_SRP links to Rfam database...	0.73	0.70	0.76	63	38143	22	5	15	2	27
SRP_00174	Bacteria_large_SRP links to Rfam database...	0.33	0.31	0.35	27	38704	50	7	43	0	59
SRP_00178	Plant_SRP links to Rfam database...	0.19	0.18	0.21	18	45666	69	8	61	0	84
SRP_00179	Plant_SRP links to Rfam database...	0.46	0.43	0.51	45	45967	47	6	38	3	60
SRP_00181	Plant_SRP links to Rfam database...	0.19	0.18	0.20	18	45968	70	1	69	0	84
SRP_00182	Plant_SRP links to Rfam database...	0.70	0.69	0.71	70	45957	32	7	22	3	31
SRP_00184	Plant_SRP links to Rfam database...	0.00	0.00	0.00	0	45961	95	9	86	0	100
SRP_00188	Plant_SRP links to Rfam database...	0.18	0.18	0.18	14	31046	65	10	55	0	65
SRP_00228	Metazoa_SRP links to Rfam database...	0.41	0.38	0.46	36	45372	45	2	41	2	59
SRP_00234	Bacteria_large_SRP links to Rfam database...	0.34	0.34	0.34	29	36230	60	5	51	4	57
SRP_00308	Bacteria_large_SRP links to Rfam database...	0.45	0.42	0.48	37	36238	40	5	35	0	51
SRP_00317	Metazoa_SRP links to Rfam database...	0.57	0.52	0.63	51	45069	32	1	29	2	47
SRP_00335	Bacteria_large_SRP links to Rfam database...	0.19	0.26	0.15	10	35178	77	23	34	20	29
SRP_00337	Bacteria_large_SRP links to Rfam database...	0.81	0.78	0.85	71	35427	14	1	12	1	20
SRP_00347	Metazoa_SRP links to Rfam database...	0.31	0.30	0.32	29	46575	64	8	53	3	67
SRP_00368	Metazoa_SRP links to Rfam database...	0.42	0.40	0.45	39	43869	50	7	41	2	59
TMR_00017	tmRNA links to Rfam database...	0.25	0.24	0.26	24	67070	73	5	62	6	78
TMR_00018	tmRNA links to Rfam database...	0.56	0.59	0.54	54	64520	48	15	31	2	38
TMR_00038	tmRNA links to Rfam database...	0.28	0.28	0.29	31	71145	81	15	62	4	79
TMR_00042	tmRNA links to Rfam database...	0.16	0.15	0.16	15	62744	81	8	68	5	83
TMR_00046	tmRNA links to Rfam database...	0.28	0.29	0.26	28	62729	78	15	63	0	68
TMR_00048	tmRNA links to Rfam database...	0.31	0.33	0.30	31	64876	75	16	57	2	64
TMR_00080	tmRNA links to Rfam database...	0.45	0.46	0.44	44	70400	57	19	37	1	52
TMR_00082	tmRNA links to Rfam database...	0.50	0.49	0.52	47	67805	48	11	33	4	49
TMR_00123	tmRNA links to Rfam database...	0.26	0.25	0.27	25	66338	71	4	63	4	76
TMR_00137	tmRNA links to Rfam database...	0.39	0.36	0.43	32	61000	48	8	35	5	57
TMR_00142	tmRNA links to Rfam database...	0.54	0.53	0.55	54	70778	56	10	34	12	48
TMR_00207	tmRNA links to Rfam database...	0.25	0.24	0.25	25	72291	81	7	67	7	78
TMR_00257	tmRNA links to Rfam database...	0.24	0.22	0.25	22	67073	67	13	53	1	76
TMR_00271	tmRNA links to Rfam database...	0.44	0.45	0.44	41	64168	61	6	46	9	50
TMR_00332	tmRNA links to Rfam database...	0.51	0.48	0.55	48	67073	45	7	33	5	51
TMR_00366	tmRNA links to Rfam database...	0.50	0.51	0.50	51	67794	55	15	36	4	49
TMR_00378	tmRNA links to Rfam database...	0.43	0.44	0.42	43	67793	60	13	47	0	54
TMR_00399	tmRNA links to Rfam database...	0.26	0.27	0.25	25	64879	79	17	59	3	69
TMR_00404	tmRNA links to Rfam database...	0.42	0.46	0.39	42	67419	67	21	46	0	50
TMR_00427	tmRNA links to Rfam database...	0.33	0.31	0.36	30	67445	60	9	44	7	67
TMR_00443	tmRNA links to Rfam database...	0.52	0.48	0.56	50	67071	42	9	31	2	54
TMR_00451	tmRNA links to Rfam database...	0.21	0.22	0.20	20	63448	82	16	62	4	69
TMR_00458	tmRNA links to Rfam database...	0.37	0.34	0.40	32	63465	53	15	34	4	61
TMR_00469	tmRNA links to Rfam database...	0.35	0.34	0.35	34	64524	67	5	57	5	66
TMR_00472	tmRNA links to Rfam database...	0.23	0.24	0.23	23	64519	86	16	62	8	74
TMR_00519	tmRNA links to Rfam database...	0.25	0.25	0.24	24	63091	77	12	63	2	71
TMR_00520	tmRNA links to Rfam database...	0.35	0.33	0.37	33	63100	66	11	46	9	66
TMR_00522	tmRNA links to Rfam database...	0.37	0.36	0.39	35	63100	62	5	50	7	62
TMR_00528	tmRNA links to Rfam database...	0.46	0.44	0.48	43	63100	58	12	35	11	54
TMR_00540	tmRNA links to Rfam database...	0.10	0.11	0.11	11	73432	101	12	81	8	93
TMR_00568	tmRNA links to Rfam database...	0.35	0.33	0.37	33	60637	62	7	49	6	66
TMR_00571	tmRNA links to Rfam database...	0.43	0.41	0.45	41	60635	57	9	41	7	58
TMR_00580	tmRNA links to Rfam database...	0.46	0.43	0.49	43	60638	48	5	40	3	57
TMR_00584	tmRNA links to Rfam database...	0.58	0.55	0.61	53	60988	42	5	29	8	44
TMR_00586	tmRNA links to Rfam database...	0.42	0.39	0.44	38	60989	53	9	39	5	59
TMR_00616	tmRNA links to Rfam database...	0.26	0.26	0.26	26	67061	78	9	65	4	73
TMR_00699	tmRNA links to Rfam database...	0.41	0.41	0.41	42	67059	60	11	49	0	60
TMR_00702	tmRNA links to Rfam database...	0.25	0.26	0.25	26	67055	83	7	73	3	74
TMR_00703	tmRNA links to Rfam database...	0.38	0.37	0.40	37	67435	58	5	51	2	62

^top

Performance of RSpredict(20) - scored lower in this pairwise comparison

1. Total counts & total scores for RSpredict(20)

Total Base Pair Counts
Total TP	1036
Total TN	14159081
Total FP	14577
Total FP CONTRA	1944
Total FP INCONS	12132
Total FP COMP	501
Total FN	24090

Total Scores
MCC	0.052
Average MCC ± 95% Confidence Intervals	0.047 ± 0.012
Sensitivity	0.041
Positive Predictive Value	0.069
Nr of predictions	245

^top

2. Individual counts for RSpredict(20) [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00004	RNaseP_bact_a links to Rfam database...	0.01	0.01	0.02	1	47840	54	12	42	0	96
ASE_00005	RNaseP_bact_a links to Rfam database...	0.13	0.09	0.21	10	57923	37	1	36	0	107
ASE_00006	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	47543	43	3	40	0	93
ASE_00007	RNaseP_bact_a links to Rfam database...	0.05	0.04	0.07	4	59624	57	13	44	0	106
ASE_00012	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	73867	57	5	48	4	123
ASE_00018	RNaseP_bact_a links to Rfam database...	0.11	0.07	0.18	10	80544	49	7	40	2	124
ASE_00020	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	73854	74	5	61	8	126
ASE_00021	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	104125	72	3	68	1	160
ASE_00022	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	82939	94	7	82	5	124
ASE_00028	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	84576	90	11	79	0	126
ASE_00035	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	70427	79	8	65	6	118
ASE_00037	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	59294	48	3	43	2	110
ASE_00038	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	53584	44	5	39	0	101
ASE_00040	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	78969	34	7	27	0	133
ASE_00041	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	57602	28	2	26	0	108
ASE_00042	RNaseP_bact_a links to Rfam database...	0.10	0.06	0.17	9	90046	45	4	41	0	136
ASE_00044	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	54577	38	8	30	0	105
ASE_00045	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	47218	60	6	54	0	80
ASE_00064	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	45395	56	6	50	0	89
ASE_00068	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	37625	53	1	49	3	85
ASE_00074	RNaseP_bact_a links to Rfam database...	0.10	0.06	0.17	7	67854	37	2	33	2	112
ASE_00075	RNaseP_bact_a links to Rfam database...	0.03	0.02	0.05	3	108746	70	3	59	8	159
ASE_00077	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	45116	34	1	33	0	86
ASE_00078	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	43029	42	5	37	0	83
ASE_00080	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	71576	59	1	54	4	123
ASE_00081	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	49718	52	3	49	0	97
ASE_00082	RNaseP_bact_a links to Rfam database...	0.01	0.01	0.02	1	70455	51	5	39	7	115
ASE_00083	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	62427	56	5	49	2	110
ASE_00084	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	53583	45	2	43	0	99
ASE_00087	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	88355	55	2	53	0	144
ASE_00090	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	55546	65	8	57	0	101
ASE_00092	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	63491	55	9	46	0	113
ASE_00099	RNaseP_bact_a links to Rfam database...	0.12	0.08	0.18	10	64563	47	5	42	0	110
ASE_00104	RNaseP_bact_a links to Rfam database...	0.12	0.08	0.18	10	64206	47	8	37	2	109
ASE_00105	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	64219	45	1	41	3	111
ASE_00107	RNaseP_bact_a links to Rfam database...	0.04	0.03	0.06	4	73084	65	2	63	0	123
ASE_00114	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	45389	62	20	42	0	77
ASE_00115	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	54548	68	7	60	1	101
ASE_00118	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	60672	56	7	47	2	102
ASE_00119	RNaseP_bact_a links to Rfam database...	0.03	0.02	0.04	2	62788	52	3	42	7	106
ASE_00123	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	38483	22	2	18	2	85
ASE_00125	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	39309	35	1	30	4	88
ASE_00126	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	40438	35	3	29	3	82
ASE_00128	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	53258	43	4	39	0	100
ASE_00129	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	62779	56	5	51	0	111
ASE_00131	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	39274	67	8	58	1	85
ASE_00134	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	50347	58	3	53	2	95
ASE_00135	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	63140	50	4	46	0	109
ASE_00136	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	48162	49	0	43	6	92
ASE_00137	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	48462	54	8	46	0	98
ASE_00138	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	40422	50	3	45	2	81
ASE_00140	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	70802	81	4	70	7	125
ASE_00142	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	67100	61	5	56	0	122
ASE_00146	RNaseP_bact_a links to Rfam database...	0.05	0.03	0.07	4	70819	53	5	48	0	120
ASE_00153	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	57594	47	12	24	11	73
ASE_00161	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	53550	82	16	62	4	87
ASE_00163	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	53255	51	11	35	5	93
ASE_00165	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	52920	55	14	41	0	101
ASE_00170	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	48767	61	5	56	0	93
ASE_00171	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	48468	50	7	41	2	94
ASE_00172	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	58942	55	7	47	1	106
ASE_00174	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	61015	60	7	53	0	109
ASE_00175	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	59976	55	5	50	0	107
ASE_00179	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	44222	32	6	25	1	84
ASE_00180	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	51312	49	6	42	1	100
ASE_00181	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	57585	47	12	33	2	106
ASE_00182	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	84196	62	11	48	3	136
ASE_00183	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	61379	48	2	44	2	113
ASE_00184	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	54567	49	8	40	1	102
ASE_00185	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	73478	58	8	50	0	128
ASE_00186	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	78937	66	12	54	0	132
ASE_00190	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	45411	41	7	33	1	90
ASE_00197	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	89207	48	1	45	2	145
ASE_00198	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	52603	48	3	44	1	102
ASE_00203	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46622	45	4	39	2	96
ASE_00212	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	93880	81	6	75	0	148
ASE_00214	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	56231	49	11	38	0	103
ASE_00215	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	48444	76	3	69	4	99
ASE_00216	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	39302	38	11	27	0	82
ASE_00217	RNaseP_bact_a links to Rfam database...	0.06	0.04	0.09	4	40423	43	5	38	0	86
ASE_00221	RNaseP_bact_a links to Rfam database...	0.12	0.09	0.18	10	64564	47	10	36	1	107
ASE_00228	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46906	70	8	57	5	86
ASE_00229	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	42431	55	12	43	0	87
ASE_00231	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	47852	43	5	38	0	96
ASE_00232	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	38461	45	2	40	3	84
ASE_00234	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	75400	71	6	60	5	129
ASE_00238	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	64206	57	6	49	2	114
ASE_00241	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	43916	45	8	32	5	87
ASE_00242	RNaseP_bact_a links to Rfam database...	0.11	0.07	0.16	8	61026	43	8	33	2	104
ASE_00248	RNaseP_bact_a links to Rfam database...	0.12	0.09	0.17	10	62421	51	12	38	1	104
ASE_00254	RNaseP_bact_a links to Rfam database...	0.02	0.01	0.03	1	36817	38	6	32	0	81
ASE_00255	RNaseP_bact_a links to Rfam database...	0.08	0.06	0.12	8	74622	65	5	56	4	122
ASE_00257	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	50989	51	4	47	0	97
ASE_00263	RNaseP_bact_a links to Rfam database...	0.02	0.02	0.03	2	70422	76	10	66	0	118
ASE_00267	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	45099	51	10	41	0	88
ASE_00270	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	72338	52	5	47	0	128
ASE_00274	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	55569	43	4	38	1	103
ASE_00277	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	48169	36	8	28	0	91
ASE_00279	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	53256	47	9	36	2	101
ASE_00280	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	51946	57	9	48	0	98
ASE_00281	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	44508	43	4	39	0	88
ASE_00282	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	77748	67	6	61	0	127
ASE_00283	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	61715	70	4	57	9	107
ASE_00284	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	58255	56	9	47	0	108
ASE_00285	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	68937	72	9	60	3	122
ASE_00286	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46631	36	6	28	2	92
ASE_00287	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	54902	45	5	39	1	103
ASE_00292	RNaseP_bact_a links to Rfam database...	0.10	0.07	0.13	10	81733	67	11	56	0	128
ASE_00294	RNaseP_bact_a links to Rfam database...	0.08	0.06	0.10	10	114384	87	9	78	0	161
ASE_00296	RNaseP_bact_a links to Rfam database...	0.10	0.07	0.14	10	91737	59	5	54	0	135
ASE_00297	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	52927	52	2	46	4	98
ASE_00298	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	67482	46	9	37	0	113
ASE_00305	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	54535	87	12	68	7	85
ASE_00318	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	80091	109	9	100	0	118
ASE_00321	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	54540	79	9	66	4	88
ASE_00328	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	72698	75	17	56	2	112
ASE_00332	RNaseP_bact_a links to Rfam database...	0.04	0.03	0.06	4	81740	67	5	61	1	134
ASE_00335	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	75387	79	10	69	0	116
ASE_00340	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46000	56	11	45	0	85
ASE_00342	RNaseP_bact_a links to Rfam database...	0.11	0.08	0.15	9	62422	50	15	35	0	106
ASE_00353	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	57915	55	1	54	0	107
ASE_00361	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	75396	71	4	66	1	127
ASE_00362	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	48153	52	5	47	0	91
ASE_00363	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	51317	45	8	35	2	94
ASE_00364	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	54241	47	6	38	3	105
ASE_00366	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	58603	56	10	40	6	98
ASE_00367	RNaseP_bact_a links to Rfam database...	0.02	0.01	0.03	1	43031	42	9	30	3	85
ASE_00369	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	55900	45	4	41	0	107
ASE_00370	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	41869	37	3	33	1	84
ASE_00372	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	51938	65	11	54	0	100
ASE_00374	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	44801	50	6	43	1	88
ASE_00376	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	56902	53	6	45	2	105
ASE_00377	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	57581	49	2	47	0	107
ASE_00379	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46010	46	12	34	0	89
ASE_00382	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	41857	50	15	33	2	84
ASE_00383	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	54575	40	8	32	0	105
ASE_00384	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	48471	45	11	34	0	92
ASE_00386	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	50354	49	7	42	0	96
ASE_00387	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	55893	52	9	43	0	104
ASE_00388	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	45709	45	6	38	1	89
ASE_00390	RNaseP_bact_a links to Rfam database...	0.06	0.05	0.08	4	42143	48	8	40	0	81
ASE_00393	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	47858	37	5	32	0	93
ASE_00394	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46928	46	4	39	3	93
ASE_00395	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	41569	48	7	40	1	84
ASE_00396	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	41584	33	1	31	1	83
ASE_00397	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	54567	48	3	45	0	105
ASE_00398	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	55878	67	13	54	0	104
ASE_00400	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	57912	63	3	55	5	106
ASE_00401	RNaseP_bact_a links to Rfam database...	0.01	0.01	0.02	1	76968	59	4	55	0	125
ASE_00402	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	42449	37	7	30	0	85
ASE_00403	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	55893	52	4	48	0	107
ASE_00404	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	43029	44	8	34	2	85
ASE_00406	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	48778	52	7	43	2	94
ASE_00411	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	49418	38	7	30	1	89
ASE_00412	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	58265	47	6	40	1	105
ASE_00413	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	44496	58	11	44	3	81
ASE_00415	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	54902	44	5	39	0	103
ASE_00416	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	77376	46	6	39	1	127
ASE_00419	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	54894	52	14	38	0	103
ASE_00422	RNaseP_bact_a links to Rfam database...	0.12	0.07	0.18	7	46933	31	5	26	0	87
ASE_00423	RNaseP_bact_a links to Rfam database...	0.14	0.09	0.21	10	56905	39	2	36	1	99
ASE_00427	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	40707	50	19	29	2	46
ASE_00428	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	76592	46	8	36	2	125
ASE_00430	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46931	41	3	37	1	97
ASE_00437	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	79324	77	6	71	0	135
ASE_00441	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	64199	62	9	53	0	112
ASE_00448	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	64203	61	9	49	3	112
ASE_00451	RNaseP_bact_a links to Rfam database...	0.08	0.06	0.11	8	70803	65	15	50	0	117
RFA_00599	Telomerase-vert links to Rfam database...	0.00	0.00	0.00	0	101404	84	13	58	13	111
RFA_00601	Telomerase-vert links to Rfam database...	0.00	0.00	0.00	0	99153	84	11	71	2	114
RFA_00602	Telomerase-vert links to Rfam database...	0.00	0.00	0.00	0	101402	74	17	56	1	116
SRP_00006	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	45659	94	11	83	0	101
SRP_00011	Plant_SRP links to Rfam database...	0.18	0.16	0.20	17	46277	69	3	63	3	87
SRP_00015	Plant_SRP links to Rfam database...	0.21	0.20	0.22	20	46271	70	10	59	1	79
SRP_00024	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	37609	66	11	55	0	87
SRP_00026	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	36784	72	7	65	0	88
SRP_00027	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	37054	74	10	64	0	87
SRP_00030	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	36783	73	14	59	0	88
SRP_00031	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	36244	71	10	61	0	89
SRP_00037	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	36511	74	11	63	0	87
SRP_00050	Metazoa_SRP links to Rfam database...	0.07	0.07	0.07	7	44756	87	10	77	0	92
SRP_00066	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	45356	96	4	91	1	100
SRP_00086	Metazoa_SRP links to Rfam database...	0.37	0.36	0.38	36	44158	62	1	58	3	64
SRP_00088	Bacteria_large_SRP links to Rfam database...	0.05	0.04	0.06	4	34123	64	3	61	0	85
SRP_00089	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	35711	67	15	52	0	90
SRP_00090	Bacteria_large_SRP links to Rfam database...	0.07	0.07	0.08	6	35434	71	4	67	0	84
SRP_00102	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	44458	93	6	87	0	101
SRP_00103	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	45353	98	2	96	0	102
SRP_00152	Plant_SRP links to Rfam database...	0.20	0.18	0.21	19	45663	73	7	64	2	84
SRP_00171	Metazoa_SRP links to Rfam database...	0.54	0.55	0.55	48	45363	51	4	36	11	40
SRP_00173	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	38154	73	8	64	1	90
SRP_00174	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	38706	76	10	65	1	86
SRP_00178	Plant_SRP links to Rfam database...	0.00	0.00	0.00	0	45670	83	3	80	0	102
SRP_00179	Plant_SRP links to Rfam database...	0.00	0.00	0.00	0	45966	90	5	85	0	105
SRP_00181	Plant_SRP links to Rfam database...	0.00	0.00	0.00	0	45970	86	6	80	0	102
SRP_00182	Plant_SRP links to Rfam database...	0.24	0.23	0.26	23	45968	67	5	60	2	78
SRP_00184	Plant_SRP links to Rfam database...	0.19	0.18	0.21	18	45972	70	6	60	4	82
SRP_00188	Plant_SRP links to Rfam database...	0.04	0.04	0.05	3	31059	63	7	56	0	76
SRP_00228	Metazoa_SRP links to Rfam database...	0.06	0.06	0.06	6	45357	89	1	87	1	89
SRP_00234	Bacteria_large_SRP links to Rfam database...	0.07	0.07	0.08	6	36238	71	6	65	0	80
SRP_00308	Bacteria_large_SRP links to Rfam database...	0.07	0.07	0.08	6	36239	70	10	60	0	82
SRP_00317	Metazoa_SRP links to Rfam database...	0.85	0.81	0.89	79	45061	18	1	9	8	19
SRP_00335	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	35205	40	14	26	0	39
SRP_00337	Bacteria_large_SRP links to Rfam database...	0.07	0.07	0.08	6	35432	73	12	61	0	85
SRP_00347	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	46569	96	8	88	0	96
SRP_00368	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	43864	92	8	84	0	98
TMR_00017	tmRNA links to Rfam database...	0.29	0.27	0.31	28	67072	62	13	48	1	74
TMR_00018	tmRNA links to Rfam database...	0.16	0.15	0.17	14	64538	71	18	50	3	78
TMR_00038	tmRNA links to Rfam database...	0.30	0.25	0.36	27	71178	52	8	40	4	83
TMR_00042	tmRNA links to Rfam database...	0.17	0.15	0.19	15	62757	64	10	53	1	83
TMR_00046	tmRNA links to Rfam database...	0.08	0.07	0.09	7	62756	76	8	64	4	89
TMR_00048	tmRNA links to Rfam database...	0.16	0.15	0.17	14	64899	73	7	60	6	81
TMR_00080	tmRNA links to Rfam database...	0.16	0.15	0.17	14	70418	78	22	46	10	82
TMR_00082	tmRNA links to Rfam database...	0.16	0.15	0.18	14	67818	73	15	49	9	82
TMR_00123	tmRNA links to Rfam database...	0.19	0.17	0.21	17	66350	70	15	48	7	84
TMR_00137	tmRNA links to Rfam database...	0.26	0.25	0.28	22	60995	61	14	44	3	67
TMR_00142	tmRNA links to Rfam database...	0.08	0.07	0.09	7	70797	78	12	60	6	95
TMR_00207	tmRNA links to Rfam database...	0.15	0.14	0.16	14	72304	74	15	57	2	89
TMR_00257	tmRNA links to Rfam database...	0.18	0.15	0.21	15	67091	65	14	41	10	83
TMR_00271	tmRNA links to Rfam database...	0.09	0.08	0.11	7	64195	67	9	50	8	84
TMR_00332	tmRNA links to Rfam database...	0.15	0.14	0.16	14	67071	82	19	57	6	85
TMR_00366	tmRNA links to Rfam database...	0.07	0.07	0.08	7	67809	85	16	64	5	93
TMR_00378	tmRNA links to Rfam database...	0.08	0.07	0.08	7	67811	85	10	68	7	90
TMR_00399	tmRNA links to Rfam database...	0.19	0.16	0.24	15	64917	50	11	37	2	79
TMR_00404	tmRNA links to Rfam database...	0.14	0.13	0.15	12	67446	70	20	50	0	80
TMR_00427	tmRNA links to Rfam database...	0.15	0.13	0.18	13	67456	63	12	47	4	84
TMR_00443	tmRNA links to Rfam database...	0.16	0.14	0.19	15	67081	70	14	51	5	89
TMR_00451	tmRNA links to Rfam database...	0.17	0.17	0.18	15	63461	73	22	48	3	74
TMR_00458	tmRNA links to Rfam database...	0.16	0.14	0.18	13	63474	65	16	43	6	80
TMR_00469	tmRNA links to Rfam database...	0.30	0.24	0.37	24	64555	48	10	31	7	76
TMR_00472	tmRNA links to Rfam database...	0.14	0.12	0.16	12	64547	67	8	53	6	85
TMR_00519	tmRNA links to Rfam database...	0.17	0.14	0.22	13	63130	51	10	37	4	82
TMR_00520	tmRNA links to Rfam database...	0.15	0.13	0.17	13	63113	77	10	54	13	86
TMR_00522	tmRNA links to Rfam database...	0.13	0.12	0.15	12	63108	76	8	62	6	85
TMR_00528	tmRNA links to Rfam database...	0.14	0.13	0.15	13	63105	77	16	56	5	84
TMR_00540	tmRNA links to Rfam database...	0.15	0.14	0.17	15	73447	81	11	63	7	89
TMR_00568	tmRNA links to Rfam database...	0.08	0.07	0.09	7	60647	74	16	56	2	92
TMR_00571	tmRNA links to Rfam database...	0.11	0.10	0.13	10	60650	68	16	50	2	89
TMR_00580	tmRNA links to Rfam database...	0.16	0.15	0.17	15	60640	72	15	56	1	85
TMR_00584	tmRNA links to Rfam database...	0.08	0.07	0.10	7	61007	69	11	50	8	90
TMR_00586	tmRNA links to Rfam database...	0.11	0.10	0.11	10	60988	77	24	53	0	87
TMR_00616	tmRNA links to Rfam database...	0.19	0.17	0.22	17	67083	64	12	49	3	82
TMR_00699	tmRNA links to Rfam database...	0.17	0.16	0.18	16	67073	79	15	57	7	86
TMR_00702	tmRNA links to Rfam database...	0.16	0.15	0.17	15	67075	75	12	59	4	85
TMR_00703	tmRNA links to Rfam database...	0.16	0.15	0.18	15	67443	76	9	61	6	84

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Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.

Table of contents:

Overview

Performance plots

Performance of McQFold - scored higher in this pairwise comparison

1. Total counts & total scores for McQFold

2. Individual counts for McQFold [ download as .csv ]

Performance of RSpredict(20) - scored lower in this pairwise comparison

1. Total counts & total scores for RSpredict(20)

2. Individual counts for RSpredict(20) [ download as .csv ]