CompaRNA - on-line benchmarks of RNA structure prediction methods

Laboratory of Structural Bioinformatics @ Adam Mickiewicz University in Poznan

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Overview

Metric	McQFold		RSpredict(seed)
MCC	0.465	>	0.028
Average MCC ± 95% Confidence Intervals	0.463 ± 0.017	>	0.030 ± 0.005
Sensitivity	0.449	>	0.018
Positive Predictive Value	0.484	>	0.046
Total TP	19252	>	762
Total TN	25095216	<	25118424
Total FP	22857	>	16701
Total FP CONTRA	2826	>	1836
Total FP INCONS	17692	>	13964
Total FP COMP	2339	>	901
Total FN	23665	<	42155
P-value	3.56938820447e-08

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Performance plots

Comparison of performance of McQFold and RSpredict(seed). Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data (individual counts for McQFold and RSpredict(seed)).
Average Matthews Correlation Coefficients (MCC) with 95% confidence intervals (CIs) were plotted for different RNA families, for which at least 3 members were present in the benchmarking dataset. 'n' denotes the number of MCCs used to calculate the average and CI. See tables below for raw data (individual counts for McQFold and RSpredict(seed)).
Comparison of average Matthews Correlation Coefficients (MCCs) for McQFold and RSpredict(seed). The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data (individual counts for McQFold and RSpredict(seed)).

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Performance of McQFold - scored higher in this pairwise comparison

1. Total counts & total scores for McQFold

Total Base Pair Counts
Total TP	19252
Total TN	25095216
Total FP	22857
Total FP CONTRA	2826
Total FP INCONS	17692
Total FP COMP	2339
Total FN	23665

Total Scores
MCC	0.465
Average MCC ± 95% Confidence Intervals	0.463 ± 0.017
Sensitivity	0.449
Positive Predictive Value	0.484
Nr of predictions	429

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2. Individual counts for McQFold [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00001	RNaseP_arch links to Rfam database...	0.78	0.73	0.82	55	34124	17	7	5	5	20
ASE_00002	RNaseP_arch links to Rfam database...	0.80	0.75	0.86	55	35447	12	4	5	3	18
ASE_00004	RNaseP_bact_a links to Rfam database...	0.50	0.48	0.52	47	47805	48	9	34	5	50
ASE_00005	RNaseP_bact_a links to Rfam database...	0.52	0.46	0.59	54	57878	40	0	38	2	63
ASE_00006	RNaseP_bact_a links to Rfam database...	0.35	0.34	0.36	32	47498	60	6	50	4	61
ASE_00007	RNaseP_bact_a links to Rfam database...	0.42	0.39	0.46	43	59591	55	2	49	4	67
ASE_00009	RNaseP_arch links to Rfam database...	0.67	0.64	0.70	43	26045	18	3	15	0	24
ASE_00010	RNaseP_bact_b links to Rfam database...	0.45	0.49	0.42	40	49675	58	19	36	3	42
ASE_00012	RNaseP_bact_a links to Rfam database...	0.42	0.39	0.46	48	73816	61	3	53	5	75
ASE_00014	RNaseP_arch links to Rfam database...	0.47	0.47	0.48	50	54180	56	9	46	1	56
ASE_00017	RNaseP_nuc links to Rfam database...	0.18	0.20	0.17	13	50963	78	25	39	14	51
ASE_00018	RNaseP_bact_a links to Rfam database...	0.54	0.51	0.57	68	80482	52	2	49	1	66
ASE_00020	RNaseP_bact_a links to Rfam database...	0.47	0.47	0.48	59	73797	64	9	55	0	67
ASE_00021	RNaseP_bact_a links to Rfam database...	0.60	0.54	0.67	86	104068	47	2	40	5	74
ASE_00022	RNaseP_bact_b links to Rfam database...	0.60	0.56	0.65	70	82920	45	5	33	7	54
ASE_00023	RNaseP_bact_a links to Rfam database...	0.57	0.57	0.58	72	84131	57	6	46	5	55
ASE_00025	RNaseP_nuc links to Rfam database...	0.36	0.37	0.35	26	78531	92	6	43	43	45
ASE_00026	RNaseP_bact_a links to Rfam database...	0.34	0.31	0.38	34	59595	58	7	49	2	76
ASE_00028	RNaseP_bact_b links to Rfam database...	0.56	0.54	0.59	68	84550	50	11	37	2	58
ASE_00029	RNaseP_bact_a links to Rfam database...	0.53	0.49	0.58	60	82924	48	3	41	4	62
ASE_00030	RNaseP_bact_a links to Rfam database...	0.59	0.56	0.62	81	85360	51	6	44	1	64
ASE_00031	RNaseP_bact_a links to Rfam database...	0.54	0.50	0.58	63	86627	56	5	41	10	63
ASE_00032	RNaseP_bact_a links to Rfam database...	0.61	0.58	0.64	69	80093	39	12	26	1	49
ASE_00033	RNaseP_bact_a links to Rfam database...	0.38	0.34	0.42	41	64883	57	3	53	1	80
ASE_00035	RNaseP_bact_a links to Rfam database...	0.29	0.27	0.32	32	70401	71	9	58	4	86
ASE_00036	RNaseP_bact_a links to Rfam database...	0.48	0.45	0.50	60	75736	64	8	51	5	72
ASE_00037	RNaseP_bact_a links to Rfam database...	0.42	0.38	0.46	42	59248	50	5	45	0	68
ASE_00038	RNaseP_bact_a links to Rfam database...	0.41	0.39	0.43	39	53538	53	3	48	2	62
ASE_00040	RNaseP_bact_a links to Rfam database...	0.27	0.26	0.29	34	78886	88	9	74	5	99
ASE_00041	RNaseP_bact_a links to Rfam database...	0.46	0.43	0.51	46	57539	48	6	39	3	62
ASE_00042	RNaseP_bact_a links to Rfam database...	0.56	0.53	0.60	77	89972	53	4	47	2	68
ASE_00044	RNaseP_bact_a links to Rfam database...	0.78	0.76	0.80	80	54515	25	4	16	5	25
ASE_00045	RNaseP_bact_b links to Rfam database...	0.30	0.29	0.31	23	47203	59	7	45	7	57
ASE_00046	RNaseP_bact_a links to Rfam database...	0.57	0.51	0.63	53	50319	32	3	28	1	50
ASE_00047	RNaseP_bact_a links to Rfam database...	0.46	0.42	0.50	54	74198	54	3	50	1	76
ASE_00052	RNaseP_bact_a links to Rfam database...	0.44	0.42	0.46	47	61323	59	9	46	4	65
ASE_00053	RNaseP_bact_a links to Rfam database...	0.56	0.55	0.57	73	79274	62	9	45	8	60
ASE_00057	RNaseP_bact_a links to Rfam database...	0.55	0.52	0.58	70	82095	57	13	37	7	64
ASE_00064	RNaseP_bact_a links to Rfam database...	0.50	0.49	0.51	44	45364	46	5	38	3	45
ASE_00066	RNaseP_bact_a links to Rfam database...	0.35	0.32	0.39	41	72286	64	3	60	1	89
ASE_00068	RNaseP_bact_a links to Rfam database...	0.70	0.60	0.82	51	37613	16	2	9	5	34
ASE_00069	RNaseP_bact_a links to Rfam database...	0.53	0.50	0.56	70	82902	60	6	50	4	70
ASE_00074	RNaseP_bact_a links to Rfam database...	0.42	0.40	0.44	48	67786	62	3	59	0	71
ASE_00075	RNaseP_bact_a links to Rfam database...	0.51	0.46	0.57	74	108681	62	4	52	6	88
ASE_00076	RNaseP_bact_a links to Rfam database...	0.51	0.47	0.56	56	68165	46	2	42	2	62
ASE_00077	RNaseP_bact_a links to Rfam database...	0.42	0.40	0.45	34	45075	47	5	36	6	52
ASE_00078	RNaseP_bact_a links to Rfam database...	0.55	0.52	0.58	43	42997	38	2	29	7	40
ASE_00079	RNaseP_bact_a links to Rfam database...	0.55	0.52	0.59	52	55523	39	5	31	3	48
ASE_00080	RNaseP_bact_a links to Rfam database...	0.32	0.30	0.35	37	71524	71	6	64	1	86
ASE_00081	RNaseP_bact_a links to Rfam database...	0.31	0.29	0.34	28	49688	56	5	49	2	69
ASE_00082	RNaseP_bact_a links to Rfam database...	0.38	0.36	0.40	42	70396	73	2	60	11	74
ASE_00083	RNaseP_bact_a links to Rfam database...	0.25	0.25	0.26	27	62379	75	6	69	0	83
ASE_00084	RNaseP_bact_a links to Rfam database...	0.60	0.57	0.64	56	53540	36	2	30	4	43
ASE_00087	RNaseP_bact_a links to Rfam database...	0.49	0.42	0.57	61	88303	52	2	44	6	83
ASE_00090	RNaseP_bact_a links to Rfam database...	0.52	0.52	0.52	53	55510	52	6	42	4	48
ASE_00092	RNaseP_bact_a links to Rfam database...	0.46	0.44	0.49	50	63444	55	6	46	3	63
ASE_00096	RNaseP_bact_a links to Rfam database...	0.56	0.50	0.63	58	63454	35	2	32	1	57
ASE_00099	RNaseP_bact_a links to Rfam database...	0.58	0.56	0.61	67	64510	44	4	39	1	53
ASE_00100	RNaseP_nuc links to Rfam database...	0.32	0.33	0.31	25	82134	111	7	49	55	51
ASE_00102	RNaseP_bact_a links to Rfam database...	0.47	0.45	0.50	75	117705	78	5	70	3	91
ASE_00104	RNaseP_bact_a links to Rfam database...	0.53	0.52	0.55	62	64148	52	8	43	1	57
ASE_00105	RNaseP_bact_a links to Rfam database...	0.35	0.32	0.38	36	64165	64	2	58	4	75
ASE_00107	RNaseP_bact_a links to Rfam database...	0.56	0.53	0.59	67	73039	48	1	46	1	60
ASE_00108	RNaseP_nuc links to Rfam database...	0.33	0.38	0.29	24	46888	72	19	40	13	39
ASE_00111	RNaseP_nuc links to Rfam database...	0.34	0.42	0.27	24	49998	74	33	31	10	33
ASE_00112	RNaseP_bact_a links to Rfam database...	0.74	0.70	0.78	81	75362	33	2	21	10	35
ASE_00114	RNaseP_bact_b links to Rfam database...	0.26	0.26	0.27	20	45376	63	10	45	8	57
ASE_00115	RNaseP_bact_a links to Rfam database...	0.61	0.57	0.64	58	54525	40	4	28	8	43
ASE_00116	RNaseP_arch links to Rfam database...	0.52	0.50	0.54	33	31565	32	3	25	4	33
ASE_00118	RNaseP_bact_a links to Rfam database...	0.39	0.37	0.40	38	60632	60	3	53	4	64
ASE_00119	RNaseP_bact_a links to Rfam database...	0.83	0.81	0.86	87	62734	14	2	12	0	21
ASE_00120	RNaseP_arch links to Rfam database...	0.47	0.46	0.49	43	46883	45	4	41	0	51
ASE_00121	RNaseP_arch links to Rfam database...	0.47	0.46	0.48	42	45063	47	7	38	2	50
ASE_00122	RNaseP_bact_a links to Rfam database...	0.70	0.67	0.73	59	43284	25	1	21	3	29
ASE_00123	RNaseP_bact_a links to Rfam database...	0.43	0.40	0.47	34	38430	45	0	39	6	51
ASE_00125	RNaseP_bact_a links to Rfam database...	0.43	0.38	0.49	33	39272	38	2	33	3	55
ASE_00126	RNaseP_bact_a links to Rfam database...	0.54	0.51	0.57	42	40396	33	3	29	1	40
ASE_00128	RNaseP_bact_a links to Rfam database...	0.43	0.39	0.48	39	53219	47	3	40	4	61
ASE_00129	RNaseP_bact_a links to Rfam database...	0.61	0.59	0.62	66	62729	42	3	37	2	45
ASE_00131	RNaseP_bact_a links to Rfam database...	0.37	0.33	0.42	28	39274	43	3	35	5	57
ASE_00132	RNaseP_bact_a links to Rfam database...	0.65	0.60	0.71	57	50323	24	4	19	1	38
ASE_00134	RNaseP_bact_a links to Rfam database...	0.33	0.32	0.35	30	50317	57	7	49	1	65
ASE_00135	RNaseP_bact_a links to Rfam database...	0.30	0.28	0.31	31	63090	74	3	66	5	78
ASE_00136	RNaseP_bact_a links to Rfam database...	0.67	0.64	0.71	59	48122	32	1	23	8	33
ASE_00137	RNaseP_bact_a links to Rfam database...	0.53	0.52	0.55	51	48423	45	5	37	3	47
ASE_00138	RNaseP_bact_a links to Rfam database...	0.56	0.51	0.63	41	40405	25	4	20	1	40
ASE_00139	RNaseP_bact_a links to Rfam database...	0.55	0.52	0.58	54	54192	42	1	38	3	50
ASE_00140	RNaseP_bact_a links to Rfam database...	0.53	0.49	0.57	61	70769	47	7	39	1	64
ASE_00142	RNaseP_bact_a links to Rfam database...	0.59	0.57	0.61	69	67048	47	5	39	3	53
ASE_00145	RNaseP_arch links to Rfam database...	0.52	0.50	0.54	56	70022	50	2	45	3	55
ASE_00146	RNaseP_bact_a links to Rfam database...	0.53	0.49	0.58	61	70770	48	1	44	3	63
ASE_00148	RNaseP_arch links to Rfam database...	0.64	0.62	0.66	96	112430	49	4	45	0	58
ASE_00151	RNaseP_bact_a links to Rfam database...	0.53	0.49	0.58	48	51920	39	9	26	4	50
ASE_00153	RNaseP_nuc links to Rfam database...	0.51	0.53	0.49	39	57550	72	9	32	31	34
ASE_00154	RNaseP_arch links to Rfam database...	0.62	0.61	0.64	65	65239	37	1	36	0	42
ASE_00155	RNaseP_arch links to Rfam database...	0.59	0.56	0.62	80	93398	54	3	47	4	62
ASE_00161	RNaseP_bact_b links to Rfam database...	0.29	0.29	0.29	25	53543	63	8	52	3	62
ASE_00163	RNaseP_bact_a links to Rfam database...	0.41	0.40	0.42	37	53213	57	4	47	6	56
ASE_00165	RNaseP_bact_a links to Rfam database...	0.40	0.39	0.42	39	52882	56	6	48	2	62
ASE_00168	RNaseP_nuc links to Rfam database...	0.32	0.38	0.28	24	60640	89	18	44	27	40
ASE_00169	RNaseP_bact_a links to Rfam database...	0.43	0.38	0.48	41	57205	47	2	43	2	66
ASE_00170	RNaseP_bact_a links to Rfam database...	0.72	0.69	0.74	64	48742	24	2	20	2	29
ASE_00171	RNaseP_bact_a links to Rfam database...	0.52	0.50	0.55	47	48431	38	3	35	0	47
ASE_00172	RNaseP_bact_a links to Rfam database...	0.50	0.47	0.54	50	58903	50	5	38	7	56
ASE_00174	RNaseP_bact_a links to Rfam database...	0.44	0.41	0.46	45	60978	53	5	47	1	64
ASE_00175	RNaseP_bact_a links to Rfam database...	0.22	0.21	0.23	23	59931	80	5	72	3	84
ASE_00176	RNaseP_bact_a links to Rfam database...	0.65	0.59	0.71	65	59940	30	4	22	4	45
ASE_00179	RNaseP_bact_a links to Rfam database...	0.54	0.52	0.56	44	44174	36	8	27	1	40
ASE_00180	RNaseP_bact_a links to Rfam database...	0.42	0.41	0.42	41	51263	60	4	52	4	59
ASE_00181	RNaseP_bact_a links to Rfam database...	0.53	0.54	0.53	57	57522	51	4	47	0	49
ASE_00182	RNaseP_bact_a links to Rfam database...	0.45	0.40	0.50	55	84145	57	2	53	2	81
ASE_00184	RNaseP_bact_a links to Rfam database...	0.52	0.51	0.54	52	54519	46	8	36	2	50
ASE_00185	RNaseP_bact_a links to Rfam database...	0.29	0.28	0.31	36	73419	81	14	67	0	92
ASE_00186	RNaseP_bact_a links to Rfam database...	0.55	0.51	0.59	67	78889	56	3	44	9	65
ASE_00187	RNaseP_arch links to Rfam database...	0.51	0.48	0.56	55	68536	48	3	41	4	60
ASE_00189	RNaseP_bact_b links to Rfam database...	0.54	0.54	0.55	55	63090	47	7	38	2	47
ASE_00190	RNaseP_bact_b links to Rfam database...	0.55	0.52	0.57	47	45369	40	2	33	5	43
ASE_00191	RNaseP_arch links to Rfam database...	0.49	0.49	0.49	30	29585	35	3	28	4	31
ASE_00192	RNaseP_bact_b links to Rfam database...	0.47	0.45	0.49	60	84543	68	10	53	5	73
ASE_00194	RNaseP_bact_b links to Rfam database...	0.40	0.39	0.42	47	73423	67	15	51	1	72
ASE_00196	RNaseP_arch links to Rfam database...	0.78	0.75	0.81	56	31557	16	2	11	3	19
ASE_00197	RNaseP_bact_a links to Rfam database...	0.42	0.39	0.45	56	89129	76	1	67	8	89
ASE_00198	RNaseP_bact_a links to Rfam database...	0.50	0.46	0.55	47	52564	44	2	37	5	55
ASE_00203	RNaseP_bact_a links to Rfam database...	0.54	0.55	0.53	53	46565	51	4	43	4	43
ASE_00204	RNaseP_bact_b links to Rfam database...	0.53	0.49	0.58	55	67801	46	7	33	6	57
ASE_00205	RNaseP_arch links to Rfam database...	0.52	0.52	0.53	47	45967	45	10	32	3	43
ASE_00209	RNaseP_arch links to Rfam database...	0.62	0.58	0.66	51	42994	26	4	22	0	37
ASE_00210	RNaseP_arch links to Rfam database...	0.57	0.55	0.58	36	27199	28	6	20	2	29
ASE_00212	RNaseP_bact_a links to Rfam database...	0.43	0.40	0.46	59	93832	80	3	67	10	89
ASE_00213	RNaseP_arch links to Rfam database...	0.71	0.70	0.73	46	27198	18	4	13	1	20
ASE_00214	RNaseP_bact_a links to Rfam database...	0.66	0.63	0.70	65	56187	35	2	26	7	38
ASE_00215	RNaseP_bact_a links to Rfam database...	0.30	0.28	0.32	28	48429	60	7	52	1	71
ASE_00216	RNaseP_bact_a links to Rfam database...	0.65	0.62	0.67	51	39264	26	7	18	1	31
ASE_00217	RNaseP_bact_a links to Rfam database...	0.21	0.19	0.25	17	40401	54	6	46	2	73
ASE_00221	RNaseP_bact_a links to Rfam database...	0.32	0.29	0.35	34	64522	65	3	61	1	83
ASE_00222	RNaseP_arch links to Rfam database...	0.52	0.50	0.55	78	111958	65	5	60	0	79
ASE_00227	RNaseP_bact_a links to Rfam database...	0.32	0.29	0.36	38	78898	67	3	64	0	95
ASE_00228	RNaseP_bact_a links to Rfam database...	0.38	0.37	0.40	32	46890	50	11	38	1	54
ASE_00229	RNaseP_bact_a links to Rfam database...	0.52	0.53	0.52	46	42398	44	6	36	2	41
ASE_00231	RNaseP_bact_a links to Rfam database...	0.63	0.60	0.67	58	47808	33	4	25	4	38
ASE_00232	RNaseP_bact_a links to Rfam database...	0.70	0.70	0.69	59	38418	29	8	18	3	25
ASE_00234	RNaseP_bact_a links to Rfam database...	0.31	0.28	0.34	36	75360	71	9	61	1	93
ASE_00237	RNaseP_nuc links to Rfam database...	0.11	0.13	0.09	7	45676	81	21	49	11	49
ASE_00238	RNaseP_bact_a links to Rfam database...	0.47	0.44	0.51	50	64163	50	2	46	2	64
ASE_00240	RNaseP_bact_a links to Rfam database...	0.26	0.26	0.27	24	46575	68	3	63	2	69
ASE_00241	RNaseP_bact_a links to Rfam database...	0.20	0.18	0.23	16	43886	55	3	51	1	71
ASE_00242	RNaseP_bact_a links to Rfam database...	0.63	0.59	0.67	66	60976	34	3	30	1	46
ASE_00245	RNaseP_nuc links to Rfam database...	0.59	0.56	0.61	44	55206	54	0	28	26	34
ASE_00246	RNaseP_nuc links to Rfam database...	0.29	0.28	0.30	19	48141	65	6	39	20	48
ASE_00247	RNaseP_nuc links to Rfam database...	0.60	0.63	0.57	40	54215	63	11	19	33	24
ASE_00248	RNaseP_bact_a links to Rfam database...	0.19	0.18	0.20	20	62382	81	6	73	2	94
ASE_00250	RNaseP_bact_a links to Rfam database...	0.61	0.57	0.64	75	78886	49	2	40	7	56
ASE_00252	RNaseP_bact_a links to Rfam database...	0.48	0.45	0.51	76	115292	77	4	68	5	92
ASE_00254	RNaseP_bact_a links to Rfam database...	0.38	0.37	0.40	30	36781	48	3	42	3	52
ASE_00255	RNaseP_bact_a links to Rfam database...	0.55	0.53	0.58	69	74572	54	4	46	4	61
ASE_00257	RNaseP_bact_a links to Rfam database...	0.50	0.48	0.53	47	50951	49	3	39	7	50
ASE_00258	RNaseP_nuc links to Rfam database...	0.76	0.78	0.74	42	26739	22	3	12	7	12
ASE_00259	RNaseP_bact_a links to Rfam database...	0.44	0.39	0.50	47	73059	50	5	42	3	74
ASE_00263	RNaseP_bact_a links to Rfam database...	0.62	0.59	0.65	71	70390	40	4	35	1	49
ASE_00264	RNaseP_nuc links to Rfam database...	0.43	0.43	0.44	43	49043	59	4	51	4	57
ASE_00267	RNaseP_bact_a links to Rfam database...	0.21	0.19	0.23	17	45075	63	8	50	5	71
ASE_00270	RNaseP_bact_a links to Rfam database...	0.45	0.42	0.49	54	72279	57	5	52	0	74
ASE_00274	RNaseP_bact_a links to Rfam database...	0.49	0.44	0.55	45	55529	38	5	32	1	58
ASE_00277	RNaseP_bact_a links to Rfam database...	0.39	0.37	0.40	34	48121	50	17	33	0	57
ASE_00279	RNaseP_bact_a links to Rfam database...	0.16	0.15	0.17	15	53215	73	2	69	2	86
ASE_00280	RNaseP_bact_a links to Rfam database...	0.40	0.40	0.41	39	51908	60	9	47	4	59
ASE_00281	RNaseP_bact_a links to Rfam database...	0.74	0.66	0.84	58	44482	17	0	11	6	30
ASE_00282	RNaseP_bact_a links to Rfam database...	0.55	0.50	0.60	64	77708	50	7	36	7	63
ASE_00283	RNaseP_bact_a links to Rfam database...	0.54	0.52	0.55	56	61675	47	3	42	2	51
ASE_00284	RNaseP_bact_a links to Rfam database...	0.21	0.20	0.22	22	58211	82	8	70	4	86
ASE_00285	RNaseP_bact_a links to Rfam database...	0.54	0.52	0.57	63	68895	53	2	46	5	59
ASE_00286	RNaseP_bact_a links to Rfam database...	0.38	0.35	0.42	32	46589	45	4	40	1	60
ASE_00287	RNaseP_bact_a links to Rfam database...	0.28	0.27	0.30	28	54852	67	9	57	1	75
ASE_00288	RNaseP_bact_a links to Rfam database...	0.68	0.60	0.78	56	45984	22	0	16	6	37
ASE_00289	RNaseP_bact_a links to Rfam database...	0.71	0.65	0.78	102	100895	33	3	25	5	55
ASE_00292	RNaseP_bact_a links to Rfam database...	0.42	0.38	0.48	52	81701	58	3	54	1	86
ASE_00294	RNaseP_bact_a links to Rfam database...	0.43	0.41	0.45	70	114326	87	5	80	2	101
ASE_00295	RNaseP_bact_a links to Rfam database...	0.46	0.41	0.52	54	73816	53	6	44	3	77
ASE_00296	RNaseP_bact_a links to Rfam database...	0.15	0.14	0.17	21	91680	105	6	99	0	124
ASE_00297	RNaseP_bact_a links to Rfam database...	0.34	0.33	0.36	32	52887	59	8	48	3	66
ASE_00298	RNaseP_bact_a links to Rfam database...	0.21	0.21	0.22	24	67418	87	14	72	1	89
ASE_00299	RNaseP_bact_a links to Rfam database...	0.48	0.45	0.51	45	49366	50	7	37	6	55
ASE_00303	RNaseP_nuc links to Rfam database...	0.62	0.61	0.63	58	67804	53	2	32	19	37
ASE_00305	RNaseP_bact_b links to Rfam database...	0.64	0.67	0.62	57	54523	44	7	28	9	28
ASE_00313	RNaseP_nuc links to Rfam database...	0.60	0.57	0.62	51	62399	57	4	27	26	38
ASE_00316	RNaseP_nuc links to Rfam database...	0.45	0.48	0.42	47	107767	88	16	50	22	51
ASE_00318	RNaseP_bact_b links to Rfam database...	0.64	0.62	0.66	73	80090	41	10	27	4	45
ASE_00321	RNaseP_bact_b links to Rfam database...	0.73	0.73	0.74	64	54528	29	3	20	6	24
ASE_00327	RNaseP_nuc links to Rfam database...	0.78	0.75	0.82	67	57209	33	3	12	18	22
ASE_00328	RNaseP_bact_b links to Rfam database...	0.61	0.60	0.63	67	72665	47	2	37	8	45
ASE_00329	RNaseP_nuc links to Rfam database...	0.76	0.76	0.75	48	40691	38	14	2	22	15
ASE_00330	RNaseP_nuc links to Rfam database...	0.64	0.67	0.63	60	56184	52	10	26	16	30
ASE_00332	RNaseP_bact_a links to Rfam database...	0.41	0.40	0.43	55	81683	75	3	69	3	83
ASE_00335	RNaseP_bact_b links to Rfam database...	0.62	0.58	0.68	67	75367	37	5	27	5	49
ASE_00337	RNaseP_nuc links to Rfam database...	0.54	0.56	0.52	40	39263	49	5	32	12	31
ASE_00338	RNaseP_nuc links to Rfam database...	0.44	0.43	0.45	42	66336	67	6	46	15	56
ASE_00339	RNaseP_bact_a links to Rfam database...	0.50	0.50	0.51	59	80085	64	7	49	8	60
ASE_00340	RNaseP_bact_a links to Rfam database...	0.34	0.35	0.33	30	45965	64	10	51	3	55
ASE_00342	RNaseP_bact_a links to Rfam database...	0.68	0.63	0.73	73	62381	29	2	25	2	42
ASE_00343	RNaseP_bact_a links to Rfam database...	0.69	0.69	0.69	78	83323	53	7	28	18	35
ASE_00346	RNaseP_arch links to Rfam database...	0.38	0.36	0.41	35	48120	53	4	46	3	62
ASE_00353	RNaseP_bact_a links to Rfam database...	0.61	0.60	0.62	64	57867	40	2	37	1	43
ASE_00359	RNaseP_arch links to Rfam database...	0.11	0.10	0.12	8	42711	62	2	57	3	72
ASE_00360	RNaseP_arch links to Rfam database...	0.40	0.37	0.44	24	29348	31	3	28	0	41
ASE_00361	RNaseP_bact_a links to Rfam database...	0.43	0.40	0.47	51	75358	59	8	49	2	76
ASE_00362	RNaseP_bact_a links to Rfam database...	0.53	0.53	0.53	48	48114	45	4	39	2	43
ASE_00363	RNaseP_bact_a links to Rfam database...	0.49	0.48	0.51	45	51272	50	5	38	7	49
ASE_00364	RNaseP_bact_a links to Rfam database...	0.55	0.51	0.59	54	54193	39	3	35	1	51
ASE_00366	RNaseP_bact_a links to Rfam database...	0.40	0.40	0.40	39	58555	60	10	49	1	59
ASE_00367	RNaseP_bact_a links to Rfam database...	0.44	0.43	0.45	37	42988	54	2	44	8	49
ASE_00369	RNaseP_bact_a links to Rfam database...	0.57	0.55	0.60	59	55846	42	6	34	2	48
ASE_00370	RNaseP_bact_a links to Rfam database...	0.43	0.40	0.47	34	41832	40	6	33	1	50
ASE_00372	RNaseP_bact_a links to Rfam database...	0.56	0.55	0.58	55	51908	43	7	33	3	45
ASE_00374	RNaseP_bact_a links to Rfam database...	0.56	0.56	0.56	49	44762	39	6	33	0	39
ASE_00375	RNaseP_bact_a links to Rfam database...	0.56	0.51	0.61	56	60286	41	2	34	5	54
ASE_00376	RNaseP_bact_a links to Rfam database...	0.55	0.51	0.60	54	56863	37	4	32	1	51
ASE_00377	RNaseP_bact_a links to Rfam database...	0.76	0.71	0.81	76	57536	23	2	16	5	31
ASE_00379	RNaseP_bact_a links to Rfam database...	0.46	0.44	0.49	39	45976	42	7	34	1	50
ASE_00380	RNaseP_bact_a links to Rfam database...	0.44	0.41	0.46	41	54857	51	1	47	3	58
ASE_00382	RNaseP_bact_a links to Rfam database...	0.73	0.68	0.78	57	41832	18	5	11	2	27
ASE_00383	RNaseP_bact_a links to Rfam database...	0.39	0.36	0.43	38	54526	51	3	48	0	67
ASE_00384	RNaseP_bact_a links to Rfam database...	0.32	0.30	0.35	28	48435	62	3	50	9	64
ASE_00385	RNaseP_bact_a links to Rfam database...	0.58	0.56	0.61	45	41831	31	10	19	2	36
ASE_00386	RNaseP_bact_a links to Rfam database...	0.58	0.56	0.60	54	50313	38	7	29	2	42
ASE_00387	RNaseP_bact_a links to Rfam database...	0.49	0.48	0.50	50	55845	53	5	45	3	54
ASE_00388	RNaseP_bact_a links to Rfam database...	0.51	0.49	0.54	44	45671	48	1	37	10	45
ASE_00390	RNaseP_bact_a links to Rfam database...	0.53	0.51	0.55	43	42117	46	1	34	11	42
ASE_00393	RNaseP_bact_a links to Rfam database...	0.37	0.34	0.41	32	47816	53	2	45	6	61
ASE_00394	RNaseP_bact_a links to Rfam database...	0.57	0.55	0.59	51	46884	41	2	34	5	42
ASE_00395	RNaseP_bact_a links to Rfam database...	0.71	0.67	0.76	56	41542	28	1	17	10	28
ASE_00396	RNaseP_bact_a links to Rfam database...	0.47	0.46	0.48	38	41536	46	8	34	4	45
ASE_00397	RNaseP_bact_a links to Rfam database...	0.51	0.47	0.55	49	54526	41	4	36	1	56
ASE_00398	RNaseP_bact_a links to Rfam database...	0.39	0.38	0.40	39	55847	61	6	53	2	65
ASE_00400	RNaseP_bact_a links to Rfam database...	0.54	0.53	0.54	56	57867	48	7	40	1	50
ASE_00401	RNaseP_bact_a links to Rfam database...	0.54	0.52	0.56	65	76912	53	7	44	2	61
ASE_00402	RNaseP_bact_a links to Rfam database...	0.59	0.55	0.64	47	42412	29	7	20	2	38
ASE_00403	RNaseP_bact_a links to Rfam database...	0.24	0.22	0.27	24	55855	70	4	62	4	83
ASE_00404	RNaseP_bact_a links to Rfam database...	0.17	0.16	0.18	14	42992	70	4	61	5	71
ASE_00406	RNaseP_bact_a links to Rfam database...	0.56	0.54	0.57	51	48739	49	2	36	11	43
ASE_00411	RNaseP_bact_a links to Rfam database...	0.27	0.27	0.27	24	49367	65	7	57	1	65
ASE_00412	RNaseP_bact_a links to Rfam database...	0.26	0.25	0.27	26	58215	71	9	61	1	79
ASE_00413	RNaseP_bact_a links to Rfam database...	0.48	0.48	0.49	39	44471	45	1	40	4	42
ASE_00414	RNaseP_bact_a links to Rfam database...	0.24	0.23	0.26	22	46276	65	0	62	3	73
ASE_00415	RNaseP_bact_a links to Rfam database...	0.62	0.59	0.65	61	54852	38	5	28	5	42
ASE_00416	RNaseP_bact_a links to Rfam database...	0.52	0.50	0.54	63	77304	57	5	49	3	64
ASE_00417	RNaseP_arch links to Rfam database...	0.36	0.37	0.36	37	54512	68	9	57	2	63
ASE_00418	RNaseP_arch links to Rfam database...	0.12	0.12	0.12	9	38703	71	10	59	2	66
ASE_00419	RNaseP_bact_a links to Rfam database...	0.75	0.71	0.78	73	54853	22	2	18	2	30
ASE_00420	RNaseP_nuc links to Rfam database...	0.73	0.75	0.72	47	43300	47	3	15	29	16
ASE_00422	RNaseP_bact_a links to Rfam database...	0.63	0.61	0.65	57	46883	38	3	28	7	37
ASE_00423	RNaseP_bact_a links to Rfam database...	0.36	0.35	0.38	38	56853	62	6	56	0	71
ASE_00426	RNaseP_bact_a links to Rfam database...	0.50	0.51	0.50	55	60965	55	10	45	0	53
ASE_00427	RNaseP_nuc links to Rfam database...	0.11	0.13	0.09	6	40688	71	32	29	10	40
ASE_00428	RNaseP_bact_a links to Rfam database...	0.54	0.51	0.57	64	76523	52	6	43	3	61
ASE_00430	RNaseP_bact_a links to Rfam database...	0.64	0.62	0.67	60	46881	36	1	29	6	37
ASE_00431	RNaseP_bact_a links to Rfam database...	0.58	0.52	0.64	49	46284	34	1	26	7	46
ASE_00434	RNaseP_bact_b links to Rfam database...	0.78	0.71	0.85	78	68173	28	1	13	14	32
ASE_00437	RNaseP_bact_a links to Rfam database...	0.45	0.42	0.48	57	79283	62	1	60	1	78
ASE_00438	RNaseP_bact_a links to Rfam database...	0.42	0.39	0.46	45	65968	53	1	52	0	71
ASE_00441	RNaseP_bact_a links to Rfam database...	0.73	0.65	0.81	73	64171	21	6	11	4	39
ASE_00443	RNaseP_nuc links to Rfam database...	0.95	0.92	0.98	46	26749	32	0	1	31	4
ASE_00447	RNaseP_bact_a links to Rfam database...	0.70	0.65	0.75	75	60278	31	4	21	6	41
ASE_00448	RNaseP_bact_a links to Rfam database...	0.37	0.34	0.40	38	64167	62	5	51	6	74
ASE_00451	RNaseP_bact_a links to Rfam database...	0.37	0.35	0.40	44	70766	67	2	64	1	81
ASE_00454	RNaseP_nuc links to Rfam database...	0.59	0.60	0.58	38	43300	50	2	25	23	25
CRW_00013	Intron_gpI links to Rfam database...	0.10	0.10	0.11	11	103641	107	9	79	19	104
CRW_00016	Intron_gpI links to Rfam database...	0.66	0.61	0.72	73	77320	38	5	23	10	47
CRW_00610	Intron_gpI links to Rfam database...	0.50	0.48	0.51	39	36239	38	6	31	1	42
CRW_00613	Intron_gpI links to Rfam database...	0.81	0.73	0.89	57	34916	15	0	7	8	21
CRW_00614	Intron_gpI links to Rfam database...	0.07	0.09	0.06	5	121689	132	26	51	55	52
CRW_00618	Intron_gpI links to Rfam database...	0.37	0.39	0.34	24	56210	60	15	31	14	37
CRW_00619	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	164963	138	7	55	76	73
CRW_00620	Intron_gpI links to Rfam database...	0.19	0.21	0.18	13	150901	128	14	47	67	50
CRW_00621	Intron_gpI links to Rfam database...	0.28	0.25	0.30	18	153121	121	12	30	79	53
CRW_00623	Intron_gpI links to Rfam database...	0.12	0.13	0.11	11	129696	122	21	67	34	72
CRW_00633	Intron_gpI links to Rfam database...	0.74	0.72	0.77	76	63447	26	8	15	3	30
CRW_00634	Intron_gpI links to Rfam database...	0.44	0.41	0.47	39	64537	48	18	26	4	55
CRW_00670	Intron_gpI links to Rfam database...	0.54	0.53	0.55	63	70011	53	6	45	2	57
CRW_00671	Intron_gpI links to Rfam database...	0.66	0.59	0.74	69	62742	28	5	19	4	48
CRW_00672	Intron_gpI links to Rfam database...	0.52	0.50	0.56	55	72291	48	9	35	4	56
CRW_00674	Intron_gpI links to Rfam database...	0.43	0.42	0.44	52	83319	69	14	51	4	72
CRW_00676	Intron_gpI links to Rfam database...	0.30	0.30	0.31	35	93414	85	9	70	6	80
CRW_00692	Intron_gpI links to Rfam database...	0.26	0.27	0.25	24	68538	77	23	50	4	66
PDB_00827	Intron_gpI links to Rfam database...	0.68	0.59	0.79	48	26967	15	0	13	2	33
PDB_00919	RNaseP_bact_a links to Rfam database...	0.53	0.49	0.59	50	44168	38	3	32	3	53
RFA_00597	Telomerase-vert links to Rfam database...	0.34	0.37	0.31	40	97776	101	20	67	14	69
RFA_00598	Telomerase-vert links to Rfam database...	0.35	0.36	0.35	36	84563	76	12	55	9	65
RFA_00599	Telomerase-vert links to Rfam database...	0.39	0.40	0.38	44	101359	92	13	59	20	67
RFA_00600	Telomerase-vert links to Rfam database...	0.18	0.21	0.16	21	120164	129	29	81	19	79
RFA_00601	Telomerase-vert links to Rfam database...	0.09	0.10	0.08	11	99104	129	18	102	9	103
RFA_00602	Telomerase-vert links to Rfam database...	0.41	0.44	0.39	51	101343	91	19	62	10	65
RFA_00606	Telomerase-cil links to Rfam database...	0.32	0.33	0.32	13	21280	34	12	16	6	26
RFA_00620	Telomerase-cil links to Rfam database...	0.36	0.38	0.34	15	21901	37	4	25	8	24
RFA_00621	RNase_MRP links to Rfam database...	0.17	0.18	0.16	14	46274	84	4	68	12	62
RFA_00623	RNase_MRP links to Rfam database...	0.34	0.33	0.35	26	43882	58	3	45	10	52
RFA_00624	RNase_MRP links to Rfam database...	0.34	0.34	0.33	21	30072	45	9	33	3	40
RFA_00626	rne5 links to Rfam database...	0.21	0.22	0.21	19	56526	76	15	56	5	68
RFA_00627	rne5 links to Rfam database...	0.42	0.40	0.44	35	56873	47	13	32	2	52
RFA_00628	rne5 links to Rfam database...	0.42	0.41	0.43	35	57209	50	7	40	3	51
RFA_00630	rne5 links to Rfam database...	0.63	0.63	0.63	55	56865	41	6	27	8	32
RFA_00639	7SK links to Rfam database...	0.37	0.39	0.36	34	54520	66	13	48	5	53
RFA_00805	RNAIII links to Rfam database...	0.56	0.52	0.60	78	133256	57	3	49	5	72
RFA_00814	R2_retro_el links to Rfam database...	0.79	0.80	0.77	33	25157	21	0	10	11	8
RFA_00815	R2_retro_el links to Rfam database...	0.56	0.59	0.53	24	24486	27	1	20	6	17
RFA_00816	R2_retro_el links to Rfam database...	0.82	0.85	0.80	35	23176	12	4	5	3	6
RFA_00817	R2_retro_el links to Rfam database...	0.35	0.39	0.31	16	21894	39	9	26	4	25
RFA_00818	R2_retro_el links to Rfam database...	0.28	0.27	0.29	11	20263	30	12	15	3	30
RFA_00819	R2_retro_el links to Rfam database...	0.30	0.29	0.31	12	27927	50	4	23	23	29
RFA_00820	bicoid_3 links to Rfam database...	0.64	0.61	0.67	98	151379	53	13	35	5	62
RFA_00830	bicoid_3 links to Rfam database...	0.39	0.36	0.43	55	152499	100	12	62	26	99
SRP_00002	Metazoa_SRP links to Rfam database...	0.41	0.38	0.44	39	45062	50	10	39	1	63
SRP_00006	Metazoa_SRP links to Rfam database...	0.14	0.13	0.15	13	45669	73	3	68	2	88
SRP_00009	Plant_SRP links to Rfam database...	0.48	0.47	0.49	48	46568	50	8	41	1	54
SRP_00011	Plant_SRP links to Rfam database...	0.29	0.26	0.32	27	46276	57	2	55	0	77
SRP_00012	Plant_SRP links to Rfam database...	0.41	0.39	0.45	39	46273	48	12	36	0	62
SRP_00015	Plant_SRP links to Rfam database...	0.52	0.48	0.56	48	46274	39	0	38	1	51
SRP_00016	Archaea_SRP links to Rfam database...	0.49	0.49	0.50	53	47789	54	4	49	1	56
SRP_00018	Fungi_SRP links to Rfam database...	0.47	0.43	0.51	35	38435	38	5	28	5	46
SRP_00019	Fungi_SRP links to Rfam database...	0.20	0.19	0.22	17	35967	66	10	52	4	74
SRP_00024	Bacteria_large_SRP links to Rfam database...	0.48	0.46	0.51	40	37596	40	2	37	1	47
SRP_00026	Bacteria_large_SRP links to Rfam database...	0.45	0.42	0.47	37	36778	46	2	39	5	51
SRP_00027	Bacteria_large_SRP links to Rfam database...	0.41	0.39	0.43	34	37048	46	7	39	0	53
SRP_00030	Bacteria_large_SRP links to Rfam database...	0.40	0.38	0.43	33	36780	44	6	37	1	55
SRP_00031	Bacteria_large_SRP links to Rfam database...	0.40	0.38	0.43	34	36236	45	2	43	0	55
SRP_00037	Bacteria_large_SRP links to Rfam database...	0.33	0.30	0.36	26	36513	46	4	42	0	61
SRP_00050	Metazoa_SRP links to Rfam database...	0.52	0.49	0.55	49	44761	40	4	36	0	50
SRP_00053	Metazoa_SRP links to Rfam database...	0.68	0.63	0.75	59	45071	26	3	17	6	35
SRP_00060	Metazoa_SRP links to Rfam database...	0.77	0.75	0.79	75	44456	24	1	19	4	25
SRP_00061	Metazoa_SRP links to Rfam database...	0.78	0.76	0.81	76	44756	22	3	15	4	24
SRP_00066	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	45360	91	8	83	0	100
SRP_00069	Fungi_SRP links to Rfam database...	0.47	0.45	0.49	38	34375	42	3	37	2	47
SRP_00070	Fungi_SRP links to Rfam database...	0.06	0.07	0.05	8	126604	150	42	102	6	113
SRP_00073	Fungi_SRP links to Rfam database...	0.34	0.34	0.34	24	38989	58	13	34	11	47
SRP_00079	Plant_SRP links to Rfam database...	0.42	0.41	0.44	36	41823	55	1	45	9	52
SRP_00085	Plant_SRP links to Rfam database...	0.38	0.38	0.38	38	45352	63	8	53	2	63
SRP_00086	Metazoa_SRP links to Rfam database...	0.70	0.64	0.77	64	44170	21	1	18	2	36
SRP_00087	Fungi_SRP links to Rfam database...	0.06	0.07	0.05	4	37321	77	23	53	1	54
SRP_00088	Bacteria_large_SRP links to Rfam database...	0.53	0.52	0.54	46	34106	39	4	35	0	43
SRP_00089	Bacteria_large_SRP links to Rfam database...	0.76	0.70	0.82	63	35701	14	1	13	0	27
SRP_00090	Bacteria_large_SRP links to Rfam database...	0.18	0.17	0.21	15	35439	58	7	50	1	75
SRP_00091	Fungi_SRP links to Rfam database...	0.64	0.64	0.65	61	52881	36	9	24	3	34
SRP_00099	Plant_SRP links to Rfam database...	0.44	0.43	0.45	41	44759	50	6	44	0	54
SRP_00102	Metazoa_SRP links to Rfam database...	0.32	0.31	0.34	31	44460	60	6	54	0	70
SRP_00103	Metazoa_SRP links to Rfam database...	0.05	0.05	0.06	5	45362	84	7	77	0	97
SRP_00104	Fungi_SRP links to Rfam database...	0.31	0.33	0.29	23	34373	61	9	48	4	46
SRP_00117	Metazoa_SRP links to Rfam database...	0.35	0.31	0.39	32	45369	53	2	48	3	70
SRP_00123	Metazoa_SRP links to Rfam database...	0.40	0.38	0.42	35	36501	49	3	46	0	56
SRP_00124	Metazoa_SRP links to Rfam database...	0.43	0.40	0.46	34	37054	43	6	34	3	51
SRP_00127	Fungi_SRP links to Rfam database...	0.50	0.50	0.50	60	72270	60	8	52	0	59
SRP_00130	Archaea_SRP links to Rfam database...	0.54	0.52	0.56	50	49681	44	3	36	5	47
SRP_00136	Fungi_SRP links to Rfam database...	0.28	0.30	0.26	21	44172	67	12	48	7	50
SRP_00142	Archaea_SRP links to Rfam database...	0.14	0.14	0.14	13	45961	82	8	74	0	80
SRP_00143	Archaea_SRP links to Rfam database...	0.54	0.53	0.56	54	49673	48	2	41	5	47
SRP_00144	Archaea_SRP links to Rfam database...	0.64	0.65	0.64	61	46569	37	4	31	2	33
SRP_00148	Fungi_SRP links to Rfam database...	0.30	0.30	0.31	26	50002	64	11	47	6	61
SRP_00152	Plant_SRP links to Rfam database...	0.44	0.44	0.45	45	45654	54	11	43	0	58
SRP_00153	Plant_SRP links to Rfam database...	0.75	0.71	0.78	76	46874	23	6	15	2	31
SRP_00157	Fungi_SRP links to Rfam database...	0.32	0.33	0.31	24	44176	62	13	40	9	48
SRP_00158	Fungi_SRP links to Rfam database...	0.38	0.44	0.33	51	124096	107	42	62	3	64
SRP_00160	Fungi_SRP links to Rfam database...	0.58	0.54	0.63	70	86208	44	8	34	2	60
SRP_00171	Metazoa_SRP links to Rfam database...	0.21	0.20	0.22	18	45368	65	8	57	0	70
SRP_00173	Bacteria_large_SRP links to Rfam database...	0.73	0.70	0.76	63	38143	22	5	15	2	27
SRP_00174	Bacteria_large_SRP links to Rfam database...	0.33	0.31	0.35	27	38704	50	7	43	0	59
SRP_00175	Fungi_SRP links to Rfam database...	0.12	0.11	0.13	9	44484	60	13	45	2	75
SRP_00178	Plant_SRP links to Rfam database...	0.19	0.18	0.21	18	45666	69	8	61	0	84
SRP_00179	Plant_SRP links to Rfam database...	0.46	0.43	0.51	45	45967	47	6	38	3	60
SRP_00181	Plant_SRP links to Rfam database...	0.19	0.18	0.20	18	45968	70	1	69	0	84
SRP_00182	Plant_SRP links to Rfam database...	0.70	0.69	0.71	70	45957	32	7	22	3	31
SRP_00184	Plant_SRP links to Rfam database...	0.00	0.00	0.00	0	45961	95	9	86	0	100
SRP_00188	Plant_SRP links to Rfam database...	0.18	0.18	0.18	14	31046	65	10	55	0	65
SRP_00197	Archaea_SRP links to Rfam database...	0.21	0.20	0.22	20	49363	73	10	62	1	81
SRP_00198	Archaea_SRP links to Rfam database...	0.08	0.08	0.09	8	50954	78	7	71	0	95
SRP_00199	Archaea_SRP links to Rfam database...	0.13	0.11	0.14	12	50956	72	6	66	0	93
SRP_00201	Archaea_SRP links to Rfam database...	0.73	0.72	0.74	80	47787	30	2	26	2	31
SRP_00202	Archaea_SRP links to Rfam database...	0.88	0.89	0.88	104	54167	15	5	9	1	13
SRP_00203	Archaea_SRP links to Rfam database...	0.73	0.74	0.71	78	48718	39	2	30	7	27
SRP_00204	Archaea_SRP links to Rfam database...	0.80	0.77	0.83	79	49046	17	5	11	1	23
SRP_00206	Archaea_SRP links to Rfam database...	0.76	0.72	0.80	78	47797	21	7	13	1	30
SRP_00208	Archaea_SRP links to Rfam database...	0.61	0.58	0.64	59	46573	35	6	27	2	42
SRP_00228	Metazoa_SRP links to Rfam database...	0.41	0.38	0.46	36	45372	45	2	41	2	59
SRP_00230	Fungi_SRP links to Rfam database...	0.51	0.49	0.54	44	39540	39	4	33	2	46
SRP_00234	Bacteria_large_SRP links to Rfam database...	0.34	0.34	0.34	29	36230	60	5	51	4	57
SRP_00239	Plant_SRP links to Rfam database...	0.26	0.27	0.26	25	50306	72	18	54	0	68
SRP_00240	Plant_SRP links to Rfam database...	0.28	0.27	0.28	28	48105	74	8	64	2	74
SRP_00241	Plant_SRP links to Rfam database...	0.30	0.30	0.29	25	45971	62	12	48	2	57
SRP_00247	Metazoa_SRP links to Rfam database...	0.31	0.31	0.31	27	47190	61	12	49	0	60
SRP_00252	Metazoa_SRP links to Rfam database...	0.39	0.40	0.37	36	49044	62	19	42	1	53
SRP_00253	Metazoa_SRP links to Rfam database...	0.41	0.42	0.40	38	49361	62	8	48	6	52
SRP_00254	Fungi_SRP links to Rfam database...	0.12	0.11	0.13	7	32329	51	13	36	2	54
SRP_00255	Archaea_SRP links to Rfam database...	0.26	0.28	0.25	26	47484	76	14	62	0	68
SRP_00257	Metazoa_SRP links to Rfam database...	0.44	0.40	0.49	43	50953	45	7	37	1	65
SRP_00260	Metazoa_SRP links to Rfam database...	0.56	0.52	0.61	52	47810	36	7	26	3	48
SRP_00265	Fungi_SRP links to Rfam database...	0.25	0.27	0.24	20	41243	71	15	50	6	53
SRP_00267	Metazoa_SRP links to Rfam database...	0.85	0.85	0.85	82	44455	16	3	11	2	14
SRP_00276	Archaea_SRP links to Rfam database...	0.54	0.54	0.55	59	50614	49	8	40	1	51
SRP_00278	Archaea_SRP links to Rfam database...	0.75	0.74	0.76	78	45953	28	5	20	3	27
SRP_00282	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	43279	86	22	64	0	63
SRP_00286	Fungi_SRP links to Rfam database...	0.31	0.30	0.33	52	136869	111	3	102	6	122
SRP_00287	Fungi_SRP links to Rfam database...	0.38	0.39	0.38	63	141610	109	20	85	4	99
SRP_00290	Fungi_SRP links to Rfam database...	0.63	0.61	0.64	83	100446	51	5	42	4	52
SRP_00292	Fungi_SRP links to Rfam database...	0.53	0.50	0.57	86	137399	70	2	63	5	87
SRP_00294	Fungi_SRP links to Rfam database...	0.20	0.19	0.21	31	129141	117	10	104	3	136
SRP_00299	Metazoa_SRP links to Rfam database...	0.27	0.25	0.28	25	44165	65	2	61	2	74
SRP_00300	Metazoa_SRP links to Rfam database...	0.35	0.33	0.38	31	44172	50	6	44	0	63
SRP_00301	Fungi_SRP links to Rfam database...	0.28	0.27	0.31	23	32565	52	6	46	0	63
SRP_00302	Fungi_SRP links to Rfam database...	0.18	0.19	0.17	15	41529	74	14	58	2	66
SRP_00308	Bacteria_large_SRP links to Rfam database...	0.45	0.42	0.48	37	36238	40	5	35	0	51
SRP_00317	Metazoa_SRP links to Rfam database...	0.57	0.52	0.63	51	45069	32	1	29	2	47
SRP_00321	Archaea_SRP links to Rfam database...	0.62	0.62	0.63	67	47479	42	8	32	2	41
SRP_00322	Archaea_SRP links to Rfam database...	0.68	0.69	0.68	75	48405	36	4	32	0	34
SRP_00323	Archaea_SRP links to Rfam database...	0.60	0.61	0.60	65	47169	46	4	40	2	42
SRP_00328	Metazoa_SRP links to Rfam database...	0.49	0.49	0.49	42	39536	43	10	33	0	43
SRP_00329	Metazoa_SRP links to Rfam database...	0.38	0.38	0.40	32	39822	50	8	41	1	53
SRP_00330	Archaea_SRP links to Rfam database...	0.10	0.11	0.10	10	49988	88	11	77	0	85
SRP_00331	Metazoa_SRP links to Rfam database...	0.50	0.47	0.53	41	37598	36	4	32	0	46
SRP_00332	Archaea_SRP links to Rfam database...	0.49	0.50	0.49	53	50295	56	3	52	1	53
SRP_00335	Bacteria_large_SRP links to Rfam database...	0.19	0.26	0.15	10	35178	77	23	34	20	29
SRP_00337	Bacteria_large_SRP links to Rfam database...	0.81	0.78	0.85	71	35427	14	1	12	1	20
SRP_00339	Archaea_SRP links to Rfam database...	0.43	0.44	0.43	41	44455	55	8	47	0	53
SRP_00340	Metazoa_SRP links to Rfam database...	0.48	0.50	0.46	41	41238	51	9	40	2	41
SRP_00347	Metazoa_SRP links to Rfam database...	0.31	0.30	0.32	29	46575	64	8	53	3	67
SRP_00361	Plant_SRP links to Rfam database...	0.52	0.48	0.56	43	41828	37	5	29	3	47
SRP_00368	Metazoa_SRP links to Rfam database...	0.42	0.40	0.45	39	43869	50	7	41	2	59
SRP_00371	Fungi_SRP links to Rfam database...	0.32	0.32	0.33	26	36235	56	9	45	2	56
SRP_00382	Fungi_SRP links to Rfam database...	0.55	0.54	0.57	91	141617	79	8	62	9	79
TMR_00173	tmRNA links to Rfam database...	0.34	0.40	0.29	17	42137	64	19	22	23	25
TMR_00357	tmRNA links to Rfam database...	0.57	0.62	0.53	57	82921	57	23	27	7	35
TMR_00601	tmRNA links to Rfam database...	0.79	0.71	0.88	30	58962	47	1	3	43	12
TMR_00696	tmRNA links to Rfam database...	0.47	0.44	0.50	50	84978	63	10	40	13	64

^top

Performance of RSpredict(seed) - scored lower in this pairwise comparison

1. Total counts & total scores for RSpredict(seed)

Total Base Pair Counts
Total TP	762
Total TN	25118424
Total FP	16701
Total FP CONTRA	1836
Total FP INCONS	13964
Total FP COMP	901
Total FN	42155

Total Scores
MCC	0.028
Average MCC ± 95% Confidence Intervals	0.030 ± 0.005
Sensitivity	0.018
Positive Predictive Value	0.046
Nr of predictions	429

^top

2. Individual counts for RSpredict(seed) [ download as .csv ]

RNA Chain	Rfam family	MCC	SENS	PPV	TP	TN	FP	FP CONTRA	FP INCONS	FP COMP	FN
ASE_00001	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	34174	17	6	11	0	75
ASE_00002	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	35495	16	6	10	0	73
ASE_00004	RNaseP_bact_a links to Rfam database...	0.08	0.04	0.17	4	47872	20	0	19	1	93
ASE_00005	RNaseP_bact_a links to Rfam database...	0.07	0.03	0.15	4	57943	23	0	23	0	113
ASE_00006	RNaseP_bact_a links to Rfam database...	0.09	0.04	0.17	4	47563	20	0	19	1	89
ASE_00007	RNaseP_bact_a links to Rfam database...	0.13	0.07	0.24	8	59652	25	2	23	0	102
ASE_00009	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	26091	15	1	14	0	67
ASE_00010	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	49724	47	8	38	1	82
ASE_00012	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	73875	45	5	40	0	123
ASE_00014	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	54262	23	7	16	0	106
ASE_00017	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	51032	8	6	2	0	64
ASE_00018	RNaseP_bact_a links to Rfam database...	0.10	0.06	0.17	8	80555	38	4	34	0	126
ASE_00020	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	73890	35	3	27	5	126
ASE_00021	RNaseP_bact_a links to Rfam database...	0.01	0.01	0.03	1	104159	37	1	35	1	159
ASE_00022	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	82960	70	11	57	2	124
ASE_00023	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	84208	47	6	41	0	127
ASE_00025	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	78581	26	7	18	1	71
ASE_00026	RNaseP_bact_a links to Rfam database...	0.08	0.05	0.15	5	59652	28	2	26	0	105
ASE_00028	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	84597	71	9	60	2	126
ASE_00029	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	82994	35	5	29	1	122
ASE_00030	RNaseP_bact_a links to Rfam database...	0.10	0.06	0.18	8	85446	37	1	36	0	137
ASE_00031	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	86701	35	6	29	0	126
ASE_00032	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	80165	36	6	29	1	118
ASE_00033	RNaseP_bact_a links to Rfam database...	0.12	0.07	0.22	8	64943	29	0	29	0	113
ASE_00035	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	70470	33	2	28	3	118
ASE_00036	RNaseP_bact_a links to Rfam database...	0.06	0.03	0.11	4	75817	34	0	34	0	128
ASE_00037	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	59301	39	5	34	0	110
ASE_00038	RNaseP_bact_a links to Rfam database...	0.08	0.04	0.17	4	53605	24	0	19	5	97
ASE_00040	RNaseP_bact_a links to Rfam database...	0.05	0.03	0.10	4	78961	38	0	38	0	129
ASE_00041	RNaseP_bact_a links to Rfam database...	0.07	0.04	0.14	4	57601	25	2	23	0	104
ASE_00042	RNaseP_bact_a links to Rfam database...	0.09	0.06	0.16	8	90051	41	0	41	0	137
ASE_00044	RNaseP_bact_a links to Rfam database...	0.07	0.04	0.14	4	54586	25	2	23	0	101
ASE_00045	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	47231	50	9	38	3	80
ASE_00046	RNaseP_bact_a links to Rfam database...	0.13	0.07	0.24	7	50374	22	2	20	0	96
ASE_00047	RNaseP_bact_a links to Rfam database...	0.11	0.06	0.21	8	74266	31	0	31	0	122
ASE_00052	RNaseP_bact_a links to Rfam database...	0.11	0.06	0.21	7	61391	27	2	25	0	105
ASE_00053	RNaseP_bact_a links to Rfam database...	0.05	0.03	0.10	4	79360	37	1	36	0	129
ASE_00057	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	82169	46	4	42	0	134
ASE_00064	RNaseP_bact_a links to Rfam database...	0.09	0.04	0.17	4	45428	21	0	19	2	85
ASE_00066	RNaseP_bact_a links to Rfam database...	0.11	0.06	0.21	8	72351	31	0	31	0	122
ASE_00068	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	37659	21	0	16	5	85
ASE_00069	RNaseP_bact_a links to Rfam database...	0.09	0.05	0.16	7	82985	37	0	36	1	133
ASE_00074	RNaseP_bact_a links to Rfam database...	0.12	0.07	0.23	8	67861	27	2	25	0	111
ASE_00075	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	108764	51	2	45	4	162
ASE_00076	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	68240	30	0	25	5	118
ASE_00077	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	45128	24	0	22	2	86
ASE_00078	RNaseP_bact_a links to Rfam database...	0.09	0.05	0.19	4	43050	19	0	17	2	79
ASE_00079	RNaseP_bact_a links to Rfam database...	0.08	0.04	0.15	4	55585	27	0	22	5	96
ASE_00080	RNaseP_bact_a links to Rfam database...	0.06	0.03	0.11	4	71595	35	1	31	3	119
ASE_00081	RNaseP_bact_a links to Rfam database...	0.08	0.04	0.17	4	49746	21	0	20	1	93
ASE_00082	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	70479	25	5	16	4	116
ASE_00083	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	62453	28	2	26	0	110
ASE_00084	RNaseP_bact_a links to Rfam database...	0.08	0.04	0.15	4	53602	24	0	22	2	95
ASE_00087	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	88388	24	0	22	2	144
ASE_00090	RNaseP_bact_a links to Rfam database...	0.08	0.04	0.16	4	55586	26	0	21	5	97
ASE_00092	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	63514	33	2	30	1	113
ASE_00096	RNaseP_bact_a links to Rfam database...	0.07	0.03	0.13	4	63515	32	0	27	5	111
ASE_00099	RNaseP_bact_a links to Rfam database...	0.11	0.07	0.20	8	64580	32	0	32	0	112
ASE_00100	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	82186	29	7	22	0	76
ASE_00102	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	117813	45	2	40	3	166
ASE_00104	RNaseP_bact_a links to Rfam database...	0.14	0.08	0.25	9	64225	27	0	27	0	110
ASE_00105	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	64234	32	1	26	5	111
ASE_00107	RNaseP_bact_a links to Rfam database...	0.12	0.06	0.24	8	73119	26	2	24	0	119
ASE_00108	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	46964	7	6	1	0	63
ASE_00111	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	50079	7	5	2	0	57
ASE_00112	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	75431	35	4	31	0	116
ASE_00114	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	45410	43	6	35	2	77
ASE_00115	RNaseP_bact_a links to Rfam database...	0.08	0.04	0.18	4	54593	20	0	18	2	97
ASE_00116	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	31609	17	1	16	0	66
ASE_00118	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	60697	31	3	26	2	102
ASE_00119	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	62807	30	4	24	2	108
ASE_00120	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	46951	20	3	17	0	94
ASE_00121	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	45130	20	1	19	0	92
ASE_00122	RNaseP_bact_a links to Rfam database...	0.09	0.05	0.19	4	43344	17	0	17	0	84
ASE_00123	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	38483	25	2	18	5	85
ASE_00125	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	39320	25	2	18	5	88
ASE_00126	RNaseP_bact_a links to Rfam database...	0.10	0.05	0.19	4	40449	17	0	17	0	78
ASE_00128	RNaseP_bact_a links to Rfam database...	0.08	0.04	0.15	4	53274	28	0	23	5	96
ASE_00129	RNaseP_bact_a links to Rfam database...	0.06	0.04	0.11	4	62797	39	2	32	5	107
ASE_00131	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	39321	24	0	19	5	85
ASE_00132	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	50380	29	0	23	6	95
ASE_00134	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	50382	23	0	21	2	95
ASE_00135	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	63169	21	0	21	0	109
ASE_00136	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	48184	23	0	21	2	92
ASE_00137	RNaseP_bact_a links to Rfam database...	0.08	0.04	0.14	4	48488	26	0	24	2	94
ASE_00138	RNaseP_bact_a links to Rfam database...	0.10	0.05	0.19	4	40449	19	0	17	2	77
ASE_00139	RNaseP_bact_a links to Rfam database...	0.07	0.04	0.14	4	54257	29	0	24	5	100
ASE_00140	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	70849	32	4	23	5	125
ASE_00142	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	67119	42	0	42	0	122
ASE_00145	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	70095	30	7	23	0	111
ASE_00146	RNaseP_bact_a links to Rfam database...	0.11	0.06	0.21	7	70843	26	2	24	0	117
ASE_00148	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	112550	26	6	19	1	154
ASE_00151	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	51972	31	3	28	0	98
ASE_00153	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	57617	13	2	11	0	73
ASE_00154	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	65318	23	5	18	0	107
ASE_00155	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	93496	32	5	27	0	142
ASE_00161	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	53576	57	8	44	5	87
ASE_00163	RNaseP_bact_a links to Rfam database...	0.08	0.04	0.14	4	53273	29	2	22	5	89
ASE_00165	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	52947	33	0	28	5	101
ASE_00168	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	60714	12	8	4	0	64
ASE_00169	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	57269	29	0	22	7	107
ASE_00170	RNaseP_bact_a links to Rfam database...	0.09	0.04	0.19	4	48807	22	0	17	5	89
ASE_00171	RNaseP_bact_a links to Rfam database...	0.09	0.04	0.20	4	48496	17	0	16	1	90
ASE_00172	RNaseP_bact_a links to Rfam database...	0.08	0.04	0.17	4	58972	22	0	20	2	102
ASE_00174	RNaseP_bact_a links to Rfam database...	0.07	0.04	0.15	4	61049	27	0	22	5	105
ASE_00175	RNaseP_bact_a links to Rfam database...	0.06	0.04	0.11	4	59996	36	0	31	5	103
ASE_00176	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	60000	35	0	31	4	110
ASE_00179	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	44231	24	1	21	2	84
ASE_00180	RNaseP_bact_a links to Rfam database...	0.08	0.04	0.17	4	51336	25	0	20	5	96
ASE_00181	RNaseP_bact_a links to Rfam database...	0.07	0.04	0.13	4	57600	31	0	26	5	102
ASE_00182	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	84231	29	0	24	5	136
ASE_00184	RNaseP_bact_a links to Rfam database...	0.08	0.04	0.16	4	54590	21	0	21	0	98
ASE_00185	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	73514	28	0	22	6	128
ASE_00186	RNaseP_bact_a links to Rfam database...	0.05	0.03	0.09	4	78958	41	0	41	0	128
ASE_00187	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	68600	35	3	32	0	115
ASE_00189	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	63151	41	5	34	2	102
ASE_00190	RNaseP_bact_b links to Rfam database...	0.04	0.02	0.07	2	45423	33	6	20	7	88
ASE_00191	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	29632	14	7	7	0	61
ASE_00192	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	84619	54	6	41	7	133
ASE_00194	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	73483	53	7	46	0	119
ASE_00196	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	31609	17	1	16	0	75
ASE_00197	RNaseP_bact_a links to Rfam database...	0.05	0.03	0.09	4	89207	42	0	42	0	141
ASE_00198	RNaseP_bact_a links to Rfam database...	0.08	0.04	0.16	4	52625	21	0	21	0	98
ASE_00203	RNaseP_bact_a links to Rfam database...	0.08	0.04	0.17	4	46641	22	0	20	2	92
ASE_00204	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	67839	58	11	46	1	112
ASE_00205	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	46035	21	4	17	0	90
ASE_00209	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	43051	20	3	17	0	88
ASE_00210	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	27244	17	5	12	0	65
ASE_00212	RNaseP_bact_a links to Rfam database...	0.05	0.03	0.08	4	93912	45	0	45	0	144
ASE_00213	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	27244	17	5	12	0	66
ASE_00214	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	56250	35	0	30	5	103
ASE_00215	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	48497	24	0	19	5	99
ASE_00216	RNaseP_bact_a links to Rfam database...	0.10	0.05	0.21	4	39321	15	0	15	0	78
ASE_00217	RNaseP_bact_a links to Rfam database...	0.09	0.04	0.17	4	40447	19	2	17	0	86
ASE_00221	RNaseP_bact_a links to Rfam database...	0.13	0.07	0.25	8	64588	24	2	22	0	109
ASE_00222	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	112064	37	10	27	0	157
ASE_00227	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	78965	38	2	36	0	133
ASE_00228	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46947	26	0	24	2	86
ASE_00229	RNaseP_bact_a links to Rfam database...	0.08	0.05	0.15	4	42460	22	0	22	0	83
ASE_00231	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	47871	24	0	24	0	96
ASE_00232	RNaseP_bact_a links to Rfam database...	0.09	0.05	0.18	4	38481	20	0	18	2	80
ASE_00234	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	75437	34	2	27	5	129
ASE_00237	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	45749	4	4	0	0	56
ASE_00238	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	64230	36	0	31	5	114
ASE_00240	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46642	28	0	23	5	93
ASE_00241	RNaseP_bact_a links to Rfam database...	0.09	0.05	0.19	4	43935	19	0	17	2	83
ASE_00242	RNaseP_bact_a links to Rfam database...	0.13	0.07	0.24	8	61041	26	2	24	0	104
ASE_00245	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	55273	5	0	5	0	78
ASE_00246	RNaseP_nuc links to Rfam database...	0.03	0.01	0.07	1	48190	14	4	10	0	66
ASE_00247	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	54275	10	6	4	0	64
ASE_00248	RNaseP_bact_a links to Rfam database...	0.13	0.07	0.24	8	62447	26	2	24	0	106
ASE_00250	RNaseP_bact_a links to Rfam database...	0.04	0.02	0.08	3	78964	36	0	36	0	128
ASE_00252	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	115395	49	2	43	4	168
ASE_00254	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	36839	17	0	17	0	82
ASE_00255	RNaseP_bact_a links to Rfam database...	0.11	0.06	0.21	8	74652	32	0	31	1	122
ASE_00257	RNaseP_bact_a links to Rfam database...	0.08	0.04	0.17	4	51017	21	0	19	2	93
ASE_00258	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	26793	3	1	2	0	54
ASE_00259	RNaseP_bact_a links to Rfam database...	0.06	0.03	0.10	4	73114	35	0	35	0	117
ASE_00263	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	70472	33	2	26	5	120
ASE_00264	RNaseP_nuc links to Rfam database...	0.10	0.04	0.25	4	49125	12	1	11	0	96
ASE_00267	RNaseP_bact_a links to Rfam database...	0.09	0.05	0.19	4	45129	18	0	17	1	84
ASE_00270	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	72368	22	2	20	0	128
ASE_00274	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	55586	30	0	25	5	103
ASE_00277	RNaseP_bact_a links to Rfam database...	0.08	0.04	0.17	4	48181	25	1	19	5	87
ASE_00279	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	53273	32	0	28	4	101
ASE_00280	RNaseP_bact_a links to Rfam database...	0.08	0.04	0.16	4	51978	26	0	21	5	94
ASE_00281	RNaseP_bact_a links to Rfam database...	0.09	0.05	0.20	4	44531	18	0	16	2	84
ASE_00282	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	77790	30	0	25	5	127
ASE_00283	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	61733	43	4	39	0	107
ASE_00284	RNaseP_bact_a links to Rfam database...	0.07	0.04	0.13	4	58280	32	2	25	5	104
ASE_00285	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	68972	39	4	30	5	122
ASE_00286	RNaseP_bact_a links to Rfam database...	0.09	0.04	0.18	4	46643	24	0	18	6	88
ASE_00287	RNaseP_bact_a links to Rfam database...	0.08	0.04	0.15	4	54920	27	0	22	5	99
ASE_00288	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46034	27	0	22	5	93
ASE_00289	RNaseP_bact_a links to Rfam database...	0.04	0.03	0.08	4	100973	48	1	47	0	153
ASE_00292	RNaseP_bact_a links to Rfam database...	0.10	0.06	0.19	8	81768	34	2	32	0	130
ASE_00294	RNaseP_bact_a links to Rfam database...	0.04	0.02	0.08	4	114431	46	0	46	0	167
ASE_00295	RNaseP_bact_a links to Rfam database...	0.10	0.06	0.18	8	73876	36	0	36	0	123
ASE_00296	RNaseP_bact_a links to Rfam database...	0.09	0.06	0.16	8	91757	41	0	41	0	137
ASE_00297	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	52950	27	0	25	2	98
ASE_00298	RNaseP_bact_a links to Rfam database...	0.07	0.04	0.15	4	67502	26	0	22	4	109
ASE_00299	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	49439	16	1	15	0	100
ASE_00303	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	67884	13	5	7	1	95
ASE_00305	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	54563	57	10	42	5	85
ASE_00313	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	62471	13	5	5	3	89
ASE_00316	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	107864	18	3	13	2	98
ASE_00318	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	80136	66	14	50	2	118
ASE_00321	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	54560	57	11	44	2	88
ASE_00327	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	57274	18	5	12	1	89
ASE_00328	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	72715	59	11	45	3	112
ASE_00329	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	40743	12	0	12	0	63
ASE_00330	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	56274	6	1	5	0	90
ASE_00332	RNaseP_bact_a links to Rfam database...	0.10	0.06	0.17	8	81763	39	0	39	0	130
ASE_00335	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	75409	59	10	47	2	116
ASE_00337	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	39330	14	0	10	4	71
ASE_00338	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	66418	12	2	10	0	98
ASE_00339	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	80153	47	9	38	0	119
ASE_00340	RNaseP_bact_a links to Rfam database...	0.09	0.05	0.17	4	46032	22	0	20	2	81
ASE_00342	RNaseP_bact_a links to Rfam database...	0.13	0.07	0.24	8	62447	26	2	24	0	107
ASE_00343	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	83404	36	5	27	4	113
ASE_00346	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	48184	21	5	16	0	97
ASE_00353	RNaseP_bact_a links to Rfam database...	0.07	0.04	0.13	4	57938	33	2	26	5	103
ASE_00359	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	42762	16	3	13	0	80
ASE_00360	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	29388	15	0	15	0	65
ASE_00361	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	75427	39	1	38	0	127
ASE_00362	RNaseP_bact_a links to Rfam database...	0.09	0.04	0.19	4	48184	19	0	17	2	87
ASE_00363	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	51340	22	0	20	2	94
ASE_00364	RNaseP_bact_a links to Rfam database...	0.07	0.04	0.15	4	54258	28	1	22	5	101
ASE_00366	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	58629	29	0	24	5	98
ASE_00367	RNaseP_bact_a links to Rfam database...	0.10	0.05	0.20	4	43051	18	0	16	2	82
ASE_00369	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	55919	31	2	24	5	107
ASE_00370	RNaseP_bact_a links to Rfam database...	0.07	0.04	0.15	3	41885	19	0	17	2	81
ASE_00372	RNaseP_bact_a links to Rfam database...	0.06	0.03	0.12	3	51978	22	0	22	0	97
ASE_00374	RNaseP_bact_a links to Rfam database...	0.09	0.05	0.17	4	44826	25	0	20	5	84
ASE_00375	RNaseP_bact_a links to Rfam database...	0.07	0.04	0.15	4	60351	28	0	23	5	106
ASE_00376	RNaseP_bact_a links to Rfam database...	0.08	0.04	0.16	4	56928	25	0	21	4	101
ASE_00377	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	57604	31	0	26	5	107
ASE_00379	RNaseP_bact_a links to Rfam database...	0.09	0.04	0.19	4	46035	19	0	17	2	85
ASE_00380	RNaseP_bact_a links to Rfam database...	0.12	0.06	0.22	6	54919	26	0	21	5	93
ASE_00382	RNaseP_bact_a links to Rfam database...	0.09	0.05	0.19	4	41884	19	0	17	2	80
ASE_00383	RNaseP_bact_a links to Rfam database...	0.07	0.04	0.15	4	54588	28	2	21	5	101
ASE_00384	RNaseP_bact_a links to Rfam database...	0.09	0.04	0.17	4	48493	21	1	18	2	88
ASE_00385	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	41886	21	0	19	2	81
ASE_00386	RNaseP_bact_a links to Rfam database...	0.08	0.04	0.17	4	50380	20	0	19	1	92
ASE_00387	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	55917	33	2	26	5	104
ASE_00388	RNaseP_bact_a links to Rfam database...	0.09	0.04	0.17	4	45729	20	1	19	0	85
ASE_00390	RNaseP_bact_a links to Rfam database...	0.09	0.05	0.19	4	42174	19	0	17	2	81
ASE_00393	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	47875	22	0	20	2	93
ASE_00394	RNaseP_bact_a links to Rfam database...	0.09	0.04	0.17	4	46948	21	0	19	2	89
ASE_00395	RNaseP_bact_a links to Rfam database...	0.09	0.05	0.19	4	41595	17	0	17	0	80
ASE_00396	RNaseP_bact_a links to Rfam database...	0.10	0.05	0.20	4	41596	18	0	16	2	79
ASE_00397	RNaseP_bact_a links to Rfam database...	0.07	0.04	0.14	4	54587	29	3	21	5	101
ASE_00398	RNaseP_bact_a links to Rfam database...	0.07	0.04	0.11	4	55910	31	1	30	0	100
ASE_00400	RNaseP_bact_a links to Rfam database...	0.08	0.04	0.15	4	57944	27	0	22	5	102
ASE_00401	RNaseP_bact_a links to Rfam database...	0.03	0.02	0.06	2	76993	33	3	30	0	124
ASE_00402	RNaseP_bact_a links to Rfam database...	0.10	0.05	0.20	4	42466	18	0	16	2	81
ASE_00403	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	55917	33	1	27	5	107
ASE_00404	RNaseP_bact_a links to Rfam database...	0.09	0.05	0.19	4	43050	19	0	17	2	81
ASE_00406	RNaseP_bact_a links to Rfam database...	0.09	0.04	0.18	4	48806	20	0	18	2	90
ASE_00411	RNaseP_bact_a links to Rfam database...	0.09	0.04	0.20	4	49435	23	1	15	7	85
ASE_00412	RNaseP_bact_a links to Rfam database...	0.07	0.04	0.14	4	58283	29	1	23	5	101
ASE_00413	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	44529	22	2	20	0	81
ASE_00414	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46332	28	1	27	0	95
ASE_00415	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	54920	26	1	25	0	103
ASE_00416	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	77398	23	1	22	0	127
ASE_00417	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	54590	25	8	17	0	100
ASE_00418	RNaseP_arch links to Rfam database...	0.00	0.00	0.00	0	38762	19	7	12	0	75
ASE_00419	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	54918	33	0	28	5	103
ASE_00420	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	43364	1	1	0	0	63
ASE_00422	RNaseP_bact_a links to Rfam database...	0.08	0.04	0.15	4	46944	25	0	23	2	90
ASE_00423	RNaseP_bact_a links to Rfam database...	0.13	0.07	0.24	8	56920	25	2	23	0	101
ASE_00426	RNaseP_bact_a links to Rfam database...	0.07	0.04	0.15	4	61049	22	2	20	0	104
ASE_00427	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	40744	11	5	6	0	46
ASE_00428	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	76610	28	1	25	2	125
ASE_00430	RNaseP_bact_a links to Rfam database...	0.08	0.04	0.16	4	46946	23	0	21	2	93
ASE_00431	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	46334	26	2	24	0	95
ASE_00434	RNaseP_bact_b links to Rfam database...	0.00	0.00	0.00	0	68212	55	8	45	2	110
ASE_00437	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	79367	34	0	34	0	135
ASE_00438	RNaseP_bact_a links to Rfam database...	0.06	0.03	0.12	4	66032	37	0	30	7	112
ASE_00441	RNaseP_bact_a links to Rfam database...	0.07	0.03	0.17	3	64243	17	0	15	2	109
ASE_00443	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	26795	1	1	0	0	50
ASE_00447	RNaseP_bact_a links to Rfam database...	0.13	0.07	0.24	8	60345	25	2	23	0	108
ASE_00448	RNaseP_bact_a links to Rfam database...	0.05	0.03	0.08	3	64224	34	7	27	0	109
ASE_00451	RNaseP_bact_a links to Rfam database...	0.12	0.06	0.24	8	70842	26	2	24	0	117
ASE_00454	RNaseP_nuc links to Rfam database...	0.00	0.00	0.00	0	43364	1	1	0	0	63
CRW_00013	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	103732	8	6	2	0	115
CRW_00016	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	77411	10	6	4	0	120
CRW_00610	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	36305	10	2	8	0	81
CRW_00613	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	34977	7	0	3	4	78
CRW_00614	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	121740	65	5	26	34	57
CRW_00618	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	56262	31	5	13	13	61
CRW_00619	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	164985	92	23	17	52	73
CRW_00620	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	150947	85	12	16	57	63
CRW_00621	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	153153	77	8	20	49	71
CRW_00623	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	129747	82	12	36	34	83
CRW_00633	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	63539	7	0	7	0	106
CRW_00634	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	64620	7	0	0	7	94
CRW_00670	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	70117	8	4	4	0	120
CRW_00671	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	62829	6	0	6	0	117
CRW_00672	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	72380	10	5	5	0	111
CRW_00674	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	83429	7	7	0	0	124
CRW_00676	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	93528	7	0	0	7	115
CRW_00692	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	68635	7	0	0	7	90
PDB_00827	Intron_gpI links to Rfam database...	0.00	0.00	0.00	0	27021	7	1	6	0	81
PDB_00919	RNaseP_bact_a links to Rfam database...	0.00	0.00	0.00	0	44226	27	1	26	0	103
RFA_00597	Telomerase-vert links to Rfam database...	0.00	0.00	0.00	0	97854	50	6	43	1	109
RFA_00598	Telomerase-vert links to Rfam database...	0.00	0.00	0.00	0	84624	42	7	35	0	101
RFA_00599	Telomerase-vert links to Rfam database...	0.00	0.00	0.00	0	101437	38	5	33	0	111
RFA_00600	Telomerase-vert links to Rfam database...	0.00	0.00	0.00	0	120256	39	7	32	0	100
RFA_00601	Telomerase-vert links to Rfam database...	0.00	0.00	0.00	0	99191	44	6	38	0	114
RFA_00602	Telomerase-vert links to Rfam database...	0.00	0.00	0.00	0	101428	47	8	39	0	116
RFA_00606	Telomerase-cil links to Rfam database...	0.00	0.00	0.00	0	21295	28	9	17	2	39
RFA_00620	Telomerase-cil links to Rfam database...	0.00	0.00	0.00	0	21916	33	2	27	4	39
RFA_00621	RNase_MRP links to Rfam database...	0.00	0.00	0.00	0	46349	11	1	10	0	76
RFA_00623	RNase_MRP links to Rfam database...	0.00	0.00	0.00	0	43946	11	3	7	1	78
RFA_00624	RNase_MRP links to Rfam database...	0.00	0.00	0.00	0	30127	8	2	6	0	61
RFA_00626	rne5 links to Rfam database...	0.00	0.00	0.00	0	56534	83	16	66	1	87
RFA_00627	rne5 links to Rfam database...	0.00	0.00	0.00	0	56869	84	21	63	0	87
RFA_00628	rne5 links to Rfam database...	0.00	0.00	0.00	0	57206	85	25	60	0	86
RFA_00630	rne5 links to Rfam database...	0.07	0.07	0.07	6	56872	79	18	57	4	81
RFA_00639	7SK links to Rfam database...	0.00	0.00	0.00	0	54546	71	13	56	2	87
RFA_00805	RNAIII links to Rfam database...	0.07	0.06	0.08	9	133271	106	9	97	0	141
RFA_00814	R2_retro_el links to Rfam database...	0.00	0.00	0.00	0	25168	36	2	30	4	41
RFA_00815	R2_retro_el links to Rfam database...	0.00	0.00	0.00	0	24501	40	5	25	10	41
RFA_00816	R2_retro_el links to Rfam database...	0.00	0.00	0.00	0	23193	37	5	22	10	41
RFA_00817	R2_retro_el links to Rfam database...	0.00	0.00	0.00	0	21919	34	5	21	8	41
RFA_00818	R2_retro_el links to Rfam database...	0.00	0.00	0.00	0	20276	28	2	23	3	41
RFA_00819	R2_retro_el links to Rfam database...	0.00	0.00	0.00	0	27928	44	7	31	6	41
RFA_00820	bicoid_3 links to Rfam database...	0.18	0.16	0.20	26	151392	108	18	89	1	134
RFA_00830	bicoid_3 links to Rfam database...	0.14	0.13	0.15	20	152495	117	21	92	4	134
SRP_00002	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	45073	77	6	71	0	102
SRP_00006	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	45687	66	8	58	0	101
SRP_00009	Plant_SRP links to Rfam database...	0.00	0.00	0.00	0	46595	70	10	60	0	102
SRP_00011	Plant_SRP links to Rfam database...	0.00	0.00	0.00	0	46290	70	5	65	0	104
SRP_00012	Plant_SRP links to Rfam database...	0.00	0.00	0.00	0	46290	70	9	61	0	101
SRP_00015	Plant_SRP links to Rfam database...	0.00	0.00	0.00	0	46288	72	10	62	0	99
SRP_00016	Archaea_SRP links to Rfam database...	0.00	0.00	0.00	0	47802	93	7	86	0	109
SRP_00018	Fungi_SRP links to Rfam database...	0.00	0.00	0.00	0	38486	17	1	16	0	81
SRP_00019	Fungi_SRP links to Rfam database...	0.00	0.00	0.00	0	36027	19	1	18	0	91
SRP_00024	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	37604	71	8	63	0	87
SRP_00026	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	36787	69	10	59	0	88
SRP_00027	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	37060	68	11	57	0	87
SRP_00030	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	36787	69	10	59	0	88
SRP_00031	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	36246	69	9	60	0	89
SRP_00037	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	36515	70	10	60	0	87
SRP_00050	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	44771	79	5	74	0	99
SRP_00053	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	45071	79	9	70	0	94
SRP_00060	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	44473	78	7	71	0	100
SRP_00061	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	44770	80	7	73	0	100
SRP_00066	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	45372	79	9	70	0	100
SRP_00069	Fungi_SRP links to Rfam database...	0.07	0.04	0.16	3	34434	18	0	16	2	82
SRP_00070	Fungi_SRP links to Rfam database...	0.04	0.02	0.07	3	126712	43	13	28	2	118
SRP_00073	Fungi_SRP links to Rfam database...	0.07	0.04	0.12	3	39034	25	9	14	2	68
SRP_00079	Plant_SRP links to Rfam database...	0.00	0.00	0.00	0	41841	65	9	55	1	88
SRP_00085	Plant_SRP links to Rfam database...	0.00	0.00	0.00	0	45381	70	6	64	0	101
SRP_00086	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	44175	78	6	72	0	100
SRP_00087	Fungi_SRP links to Rfam database...	0.07	0.05	0.10	3	37372	29	9	17	3	55
SRP_00088	Bacteria_large_SRP links to Rfam database...	0.05	0.04	0.06	4	34125	62	8	54	0	85
SRP_00089	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	35709	69	9	60	0	90
SRP_00090	Bacteria_large_SRP links to Rfam database...	0.08	0.07	0.09	6	35444	61	6	55	0	84
SRP_00091	Fungi_SRP links to Rfam database...	0.04	0.02	0.10	2	52954	22	4	15	3	93
SRP_00099	Plant_SRP links to Rfam database...	0.00	0.00	0.00	0	44782	68	9	59	0	95
SRP_00102	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	44473	78	5	73	0	101
SRP_00103	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	45372	79	7	72	0	102
SRP_00104	Fungi_SRP links to Rfam database...	0.07	0.04	0.13	3	34430	22	4	16	2	66
SRP_00117	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	45374	77	6	71	0	102
SRP_00123	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	36534	51	7	44	0	91
SRP_00124	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	37067	61	6	55	0	85
SRP_00127	Fungi_SRP links to Rfam database...	0.03	0.02	0.07	2	72363	28	7	18	3	117
SRP_00130	Archaea_SRP links to Rfam database...	0.00	0.00	0.00	0	49688	82	14	68	0	97
SRP_00136	Fungi_SRP links to Rfam database...	0.06	0.04	0.10	3	44223	30	7	20	3	68
SRP_00142	Archaea_SRP links to Rfam database...	0.00	0.00	0.00	0	45968	88	14	74	0	93
SRP_00143	Archaea_SRP links to Rfam database...	0.00	0.00	0.00	0	49674	96	12	84	0	101
SRP_00144	Archaea_SRP links to Rfam database...	0.00	0.00	0.00	0	46577	88	14	74	0	94
SRP_00148	Fungi_SRP links to Rfam database...	0.04	0.02	0.06	2	50054	35	6	24	5	85
SRP_00152	Plant_SRP links to Rfam database...	0.00	0.00	0.00	0	45682	71	8	63	0	103
SRP_00153	Plant_SRP links to Rfam database...	0.00	0.00	0.00	0	46900	71	8	63	0	107
SRP_00157	Fungi_SRP links to Rfam database...	0.00	0.00	0.00	0	44228	28	7	18	3	72
SRP_00158	Fungi_SRP links to Rfam database...	0.03	0.02	0.06	2	124219	33	4	26	3	113
SRP_00160	Fungi_SRP links to Rfam database...	0.00	0.00	0.00	0	86287	33	4	29	0	130
SRP_00171	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	45381	70	13	57	0	88
SRP_00173	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	38160	67	5	61	1	90
SRP_00174	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	38713	69	9	59	1	86
SRP_00175	Fungi_SRP links to Rfam database...	0.07	0.04	0.15	3	44531	19	5	12	2	81
SRP_00178	Plant_SRP links to Rfam database...	0.00	0.00	0.00	0	45685	68	8	60	0	102
SRP_00179	Plant_SRP links to Rfam database...	0.00	0.00	0.00	0	45986	70	10	60	0	105
SRP_00181	Plant_SRP links to Rfam database...	0.00	0.00	0.00	0	45986	70	11	59	0	102
SRP_00182	Plant_SRP links to Rfam database...	0.00	0.00	0.00	0	45987	69	10	59	0	101
SRP_00184	Plant_SRP links to Rfam database...	0.00	0.00	0.00	0	45987	69	10	59	0	100
SRP_00188	Plant_SRP links to Rfam database...	0.00	0.00	0.00	0	31055	70	13	57	0	79
SRP_00197	Archaea_SRP links to Rfam database...	0.00	0.00	0.00	0	49364	91	10	81	0	101
SRP_00198	Archaea_SRP links to Rfam database...	0.00	0.00	0.00	0	50951	89	8	81	0	103
SRP_00199	Archaea_SRP links to Rfam database...	0.00	0.00	0.00	0	50949	91	6	85	0	105
SRP_00201	Archaea_SRP links to Rfam database...	0.00	0.00	0.00	0	47806	89	7	82	0	111
SRP_00202	Archaea_SRP links to Rfam database...	0.00	0.00	0.00	0	54195	90	9	81	0	117
SRP_00203	Archaea_SRP links to Rfam database...	0.00	0.00	0.00	0	48738	90	9	81	0	105
SRP_00204	Archaea_SRP links to Rfam database...	0.00	0.00	0.00	0	49046	95	11	84	0	102
SRP_00206	Archaea_SRP links to Rfam database...	0.00	0.00	0.00	0	47807	88	6	82	0	108
SRP_00208	Archaea_SRP links to Rfam database...	0.00	0.00	0.00	0	46578	87	11	76	0	101
SRP_00228	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	45385	66	6	60	0	95
SRP_00230	Fungi_SRP links to Rfam database...	0.06	0.03	0.13	3	39597	23	4	17	2	87
SRP_00234	Bacteria_large_SRP links to Rfam database...	0.08	0.07	0.09	6	36246	63	6	57	0	80
SRP_00239	Plant_SRP links to Rfam database...	0.00	0.00	0.00	0	50325	78	12	66	0	93
SRP_00240	Plant_SRP links to Rfam database...	0.00	0.00	0.00	0	48132	73	8	65	0	102
SRP_00241	Plant_SRP links to Rfam database...	0.00	0.00	0.00	0	45983	73	13	60	0	82
SRP_00247	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	47206	73	10	62	1	87
SRP_00252	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	49071	70	13	57	0	89
SRP_00253	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	49388	67	11	56	0	90
SRP_00254	Fungi_SRP links to Rfam database...	0.00	0.00	0.00	0	32364	21	6	15	0	61
SRP_00255	Archaea_SRP links to Rfam database...	0.00	0.00	0.00	0	47497	89	17	72	0	94
SRP_00257	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	50958	82	6	76	0	108
SRP_00260	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	47824	71	3	68	0	100
SRP_00265	Fungi_SRP links to Rfam database...	0.00	0.00	0.00	0	41308	23	4	16	3	73
SRP_00267	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	44474	77	7	70	0	96
SRP_00276	Archaea_SRP links to Rfam database...	0.00	0.00	0.00	0	50636	85	9	76	0	110
SRP_00278	Archaea_SRP links to Rfam database...	0.00	0.00	0.00	0	45970	86	5	81	0	105
SRP_00282	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	43290	75	19	56	0	63
SRP_00286	Fungi_SRP links to Rfam database...	0.03	0.02	0.06	3	136975	50	7	41	2	171
SRP_00287	Fungi_SRP links to Rfam database...	0.03	0.02	0.06	3	141729	48	11	35	2	159
SRP_00290	Fungi_SRP links to Rfam database...	0.00	0.00	0.00	0	100532	44	8	36	0	135
SRP_00292	Fungi_SRP links to Rfam database...	0.03	0.02	0.06	3	137499	50	8	40	2	170
SRP_00294	Fungi_SRP links to Rfam database...	0.03	0.02	0.06	3	129237	48	8	38	2	164
SRP_00299	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	44176	77	9	68	0	99
SRP_00300	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	44175	78	7	71	0	94
SRP_00301	Fungi_SRP links to Rfam database...	0.04	0.02	0.09	2	32618	23	4	16	3	84
SRP_00302	Fungi_SRP links to Rfam database...	0.06	0.04	0.12	3	41590	25	6	17	2	78
SRP_00308	Bacteria_large_SRP links to Rfam database...	0.08	0.07	0.09	6	36247	62	14	48	0	82
SRP_00317	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	45079	71	8	63	0	98
SRP_00321	Archaea_SRP links to Rfam database...	0.00	0.00	0.00	0	47497	89	4	85	0	108
SRP_00322	Archaea_SRP links to Rfam database...	0.00	0.00	0.00	0	48431	85	9	76	0	109
SRP_00323	Archaea_SRP links to Rfam database...	0.00	0.00	0.00	0	47189	89	11	78	0	107
SRP_00328	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	39557	64	8	56	0	85
SRP_00329	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	39842	61	8	53	0	85
SRP_00330	Archaea_SRP links to Rfam database...	0.00	0.00	0.00	0	50005	81	15	66	0	95
SRP_00331	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	37606	69	9	60	0	87
SRP_00332	Archaea_SRP links to Rfam database...	0.00	0.00	0.00	0	50314	89	8	81	0	106
SRP_00335	Bacteria_large_SRP links to Rfam database...	0.00	0.00	0.00	0	35188	68	25	32	11	39
SRP_00337	Bacteria_large_SRP links to Rfam database...	0.08	0.07	0.09	6	35445	60	6	54	0	85
SRP_00339	Archaea_SRP links to Rfam database...	0.00	0.00	0.00	0	44472	79	9	70	0	94
SRP_00340	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	41259	69	13	56	0	82
SRP_00347	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	46596	69	9	60	0	96
SRP_00361	Plant_SRP links to Rfam database...	0.00	0.00	0.00	0	41838	67	12	55	0	90
SRP_00368	Metazoa_SRP links to Rfam database...	0.00	0.00	0.00	0	43877	79	6	73	0	98
SRP_00371	Fungi_SRP links to Rfam database...	0.00	0.00	0.00	0	36299	16	2	14	0	82
SRP_00382	Fungi_SRP links to Rfam database...	0.03	0.02	0.06	3	141726	51	11	38	2	167
TMR_00173	tmRNA links to Rfam database...	0.33	0.17	0.64	7	42184	8	0	4	4	35
TMR_00357	tmRNA links to Rfam database...	0.18	0.08	0.44	7	83012	9	1	8	0	85
TMR_00601	tmRNA links to Rfam database...	0.33	0.17	0.64	7	58985	11	0	4	7	35
TMR_00696	tmRNA links to Rfam database...	0.14	0.06	0.30	7	85055	18	2	14	2	107

^top

Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.

Table of contents:

Overview

Performance plots

Performance of McQFold - scored higher in this pairwise comparison

1. Total counts & total scores for McQFold

2. Individual counts for McQFold [ download as .csv ]

Performance of RSpredict(seed) - scored lower in this pairwise comparison

1. Total counts & total scores for RSpredict(seed)

2. Individual counts for RSpredict(seed) [ download as .csv ]